Intramolecular charge transfer with 1-tert-butyl-6-cyano-1,2,3,4-tetrahydroquinoline (NTC6) and other aminobenzonitriles. A comparison of experimental vapor phase spectra and crystal structures with calculations.

Calculations of molecular structures in the electronic ground state S(0) and of excited state and fluorescence energies generally refer to the gas phase. This complicates a comparison with experimental data, which often are only available for molecules in solution. Therefore, experimental absorption and fluorescence spectra in the vapor phase are presented for 1-tert-butyl-6-cyano-1,2,3,4-tetrahydroquinoline (NTC6), 1-methyl-6-cyano-1,2,3,4-tetrahydroquinoline (NMC6), 4-(dimethylamino)benzonitrile (DMABN), and 4-(diisopropylamino)benzonitrile (DIABN). NTC6 and DIABN show a dual fluorescence in the gas phase, with emissions from an intramolecular charge transfer (ICT) and a locally excited (LE) state, whereas with NMC6 and DMABN only LE emission is observed. For a comparison of the experimental molecular structure in S(0) with the results of recent computations, X-ray crystal structures of NTC6, NMC6, and several analogues are presented. For DMABN, NMC6, and NTC6, LE/ICT energy diagrams are constructed, in which the experimental energies of the Franck-Condon singlet excited states S(1) and S(2), and the LE and ICT states together with their emissions, are compared with the calculations. The LE and ICT dipole moments are also discussed. This comparison reveals substantial differences, in particular for the ICT energies, but even for the structure of the S(0) ground states. It is concluded that the computed ICT states of NTC6 and DMABN, in which the full conjugation of the phenyl ring is interrupted, is different from the ICT states measured in the experiments.

Locating the anomalous scatterer substructures in halide and sulfur phasing.

Improved data quality now makes it feasible to exploit the weak anomalous signal derived only from the sulfurs inherent to the protein or in particular from halide ions incorporated by soaking. The latter technique requires the location of a high number of partially occupied halide sites. This number appears to be roughly proportional to the exposed protein surface. This paper explores the application of dual-space ab initio methods as implemented in the program SHELXD to the location of substructures of sulfur in SAD experiments, bromide in SAD and MAD experiments and iodide using SAD and SIRAS to determine the anomalous-atom substructure. Sets of atoms consistent with the Patterson function were generated as a starting point for the dual-space recycling procedure in SHELXD. The substructure is then expanded to the full structure by maximum-likelihood phasing with SHARP and density modification with the program DM. Success in the location of the substructures and subsequent phasing depends critically on the quality of the data and on the extent of the anomalous signal. This varies with each crystal and soak, but for the same crystal the significance of the anomalous signal was found to be highly sensitive to the redundancy of the intensity measurements, which in some cases made all the difference. This is illustrated by the determination of the previously unknown structure of repeat 11 of the human mannose-6-phosphate/insulin-like growth factor II receptor (Man6P/IGFII-receptor), with 310 amino acids in the asymmetric unit, which was phased by soaking the crystals in a cryoprotectant solution containing halide anions.

Defective oligomerization of arylsulfatase a as a cause of its instability in lysosomes and metachromatic leukodystrophy.

In one of the most common mutations causing metachromatic leukodystrophy, the P426L-allele of arylsulfatase A (ASA), the deficiency of ASA results from its instability in lysosomes. Inhibition of lysosomal cysteine proteinases protects the P426L-ASA and restores the sulfatide catabolism in fibroblasts of the patients. P426L-ASA, but not wild type ASA, was cleaved by purified cathepsin L at threonine 421 yielding 54- and 9-kDa fragments. X-ray crystallography at 2.5-A resolution showed that cleavage is not due to a difference in the protein fold that would expose the peptide bond following threonine 421 to proteases. Octamerization, which depends on protonation of Glu-424, was impaired for P426L-ASA. The mutation lowers the pH for the octamer/dimer equilibrium by 0.6 pH units from pH 5.8 to 5.2. A second oligomerization mutant (ASA-A464R) was generated that failed to octamerize even at pH 4.8. A464R-ASA was degraded in lysosomes to catalytically active 54-kDa intermediate. In cathepsin L-deficient fibroblasts, degradation of P426L-ASA and A464R-ASA to the 54-kDa fragment was reduced, while further degradation was blocked. This indicates that defective oligomerization of ASA allows degradation of ASA to a catalytically active 54-kDa intermediate by lysosomal cysteine proteinases, including cathepsin L. Further degradation of the 54-kDa intermediate critically depends on cathepsin L and is modified by the structure of the 9-kDa cleavage product.