Using simulation modeling to demonstrate the performance of graph theory metrics and connectivity algorithms.

Models and metrics to measure ecological connectivity are now well-developed and widely used in research and applications to mitigate the ecological impacts of climate change and anthropogenic habitat loss. Despite the prevalent application of connectivity models, however, relatively little is known about the performance of these methods in predicting functional connectivity patterns and organism movement. Our goal in this paper was to compare different connectivity models in their abilities to predict a wide range of simulated animal movement patterns. We used the Pathwalker software to evaluate the performance of several connectivity model predictions based on graph theory, resistant kernels, and factorial least-cost paths. In addition, we assessed the efficacy of synoptic and patch-based approaches to defining source points for analysis. In total, we produced 28 different simulations of animal movement. As we expected, we found that the choice of connectivity model used was the variable that most influenced prediction accuracy. Moreover, we found that the resistant kernels approach consistently provided the strongest correlations to the simulated underlying movement processes. The results also suggested that the agent-based simulation approach itself can often be the best analytical framework to map functional connectivity for ecological research and conservation applications, given its biological realism and flexibility to implement combinations of movement mechanism, dispersal threshold, directional bias, destination bias and spatial composition of source locations for analysis. In doing so, we provide novel insights to guide future functional connectivity analyses. In future research, we could use the same model for several different species groups and see how this reliability depends on the species analyzed. This could bring to light other elements that play an essential role in predicting connectivity.

The invasive pentastome Raillietiella orientalis in a banded water snake from the pet trade.

Raillietiella orientalis is established in Florida and rapidly spreading both geographically and in known host species. A banded water snake (Nerodia fasciata), purchased in Michigan at a regional reptile show, expectorated a pentastome whose morphology and DNA sequence indicated that it was R. orientalis. This event indicates that, through the pet trade, R. orientalis has been spread 1,500 km from its previously known distribution limit. Fecal sample analyses indicated that the snake was shedding large numbers of embryonated eggs for at least several months. The diversity of reptile species that are both known hosts of R. orientalis in Florida and are commonly sold in the pet trade indicates that this invasive pentastome may become a widespread health concern for pet owners and veterinarians.

Breaking down the components of the competition-colonization trade-off: New insights into its role in diverse systems.

Performance trade-offs between competition and colonization can be an important mechanism facilitating regional coexistence of competitors. However, empirical evidence for this trade-off is mixed, raising questions about the extent to which it shapes diverse ecological communities. Here, we outline a framework that can be used to improve empirical tests of the competition-colonization trade-off. We argue that tests of the competition-colonization trade-off have been diverted into unproductive paths when dispersal mode and/or competition type have been inadequately defined. To generate comparative predictions of associations between dispersal and competitive performance, we develop a conceptual trait-based framework that clarifies how dispersal mode and type of competitor shape this trade-off at the stage of dispersal and establishment in a variety of systems. Our framework suggests that competition-colonization trade-offs may be less common for passively dispersing organisms when competitive dominants are those best able to withstand resource depletion (competitive response), and for active dispersers when traits for dispersal performance are positively associated with resource pre-emption (competitive effect). The framework presented here is designed to provide common ground for researchers working in different systems in order to prompt more effective assessment of this performance trade-off and its role in shaping community structure. By delineating key system properties that mediate the trade-off between competitive and colonization performance and their relationship to individual-level traits, researchers in disparate systems can structure their predictions about this trade-off more effectively and compare across systems more clearly.

Diversity, phylogeny and evolution of the rapidly evolving genus Psidium L. (Myrtaceae, Myrteae).

BACKGROUND AND AIMS: Psidium is the fourthth largest genus of Myrtaceae in the Neotropics. Psidium guajava is widely cultivated in the tropics for its edible fruit. It is commercially under threat due to the disease guava decline. Psidium cattleyanum is one of the 100 most invasive organisms in the world. Knowledge of the phylogenetic relationships within Psidium is poor. We aim to provide a review of the biology, morphology and ecology of Psidium, a phylogenetic tree, an infrageneric classification and a list of species. METHODS: Morphological and geographic data were obtained by studying Psidium in herbaria and in the field between 1988 and 2020. Forty-six herbaria were visited personally. A database of approx. 6000 specimens was constructed, and the literature was reviewed. Thirty species (about a third of the species in the genus) were sampled for molecular phylogenetic inference. Two chloroplast (psbA-trnH and ndhF) and two nuclear (external transcribed spacer and internal transcribed spacer) regions were targeted. Phylogenetic trees were constructed using maximum likelihood (ML; RaxML) and Bayesian inference (BI; MrBayes). KEY RESULTS: Psidium is a monophyletic genus with four major clades recognized as sections. Section Psidium (ten species), to which P. guajava belongs, is sister to the rest of the genus; it is widespread across the Neotropics. Section Obversifolia (six species; restricted to the Brazilian Atlantic Forest), which includes P. cattleyanum, is sister to the innermost clade composed of sister sections Apertiflora (31 species; widespread but most diverse in the Brazilian Atlantic Forest) + Mitranthes (26 species; widespread in dry forests and probably diverse in the Caribbean). Characters associated with diversification within Psidium are discussed. CONCLUSIONS: Research on pre-foliation, colleters, leaf anatomy, leaf physiology, staminal development, placentation and germination associated with the anatomy of the opercular plug is desirable. Studies are biased towards sections Psidium and Obversifolia, with other sections poorly known.

Dispersers and environment drive global variation in fruit colour syndromes.

The colours of fleshy fruits play a critical role in plant dispersal by advertising ripe fruits to consumers. Fruit colours have long been classified into syndromes attributed to selection by animal dispersers, despite weak evidence for this hypothesis. Here, we test the relative importance of biotic (bird and mammal frugivory) and abiotic (wet season temperatures, growing season length and UV-B radiation) factors in determining fruit colour syndrome in 3163 species of fleshy-fruited plants. We find that both dispersers and environment are important, and they interact. In warm areas, contrastive, bird-associated fruit colours increase with relative bird frugivore prevalence, whereas in cold places these colours dominate even where mammalian dispersers are prevalent. We present near-global maps of predicted fruit colour syndrome based on our species-level model and our newly developed characterisations of relative importance of bird and mammal frugivores.

No Effect of Selective Maturation on Fruit Traits for a Bird-Dispersed Species, Sambucus racemosa.

Selective abortion, also called selective maturation, is a phenomenon wherein maternal plants selectively mature ovules that have the potential to grow into higher-quality fruits, such as those that contain more seeds. We hypothesized that the effects of selective maturation on fruit traits could be influenced by the dispersal mechanism. However, to date, limited studies have been conducted on selective maturation in bird-dispersed fruits. Unlike self- or wind-dispersed species, bird-dispersed species would not selectively mature fruits that contain more seeds because they are not preferred by birds. Here, we investigated the effect of selective abortion on the fruit traits of a bird-dispersed species, elderberry (Sambucus racemosa L. subsp. kamtschatica). We performed a flower-removal experiment. Half of the inflorescences on each individual tree were removed for the treatment group, whereas the control group was not manipulated. We found that the flower-removed trees showed higher fruit sets, suggesting the existence of resource limitation. The number of seeds per fruit did not increase by the experimental treatment. Additionally, the control individuals did not produce larger fruits. The lack of effects on fruit traits supported our hypothesis that the effect of selective maturation on fruit traits may differ among species with different dispersal mechanisms.

[Radar as imaging tool in ecology and conservation biology]. / Radar jako narzedzie obrazowania w ekologii i ochronie przyrody.

Migrations and dispersal are among the most important ecological processes that shape ecosystems and influence our economy, health and safety. Movements of birds, bats and insects occur in a large spatial scale - regional, continental, or intercontinental. However, studies of these phenomena using classic methods are usually local. Breakthrough came with the development of radar technology, which enabled researchers to study animal movements in the atmosphere in a large spatial and temporal scale. The aim of this article was to present the radar imaging methods used in the research of aerial movements of birds, bats and insects. The types of radars used in research are described, and examples of the use of radar in basic research and in conservation biology are discussed. Radar visualizations are used in studies on the effect of meteorological conditions on bird migration, on spatial and temporal dynamics of movements of birds, bats and insects, and on the mechanism of orientation of migrating birds and insects. In conservation biology research radars are used in the monitoring of endangered species of birds and bats, to monitor bird activity at airports, as well as in assessing the impact of high constructions on flying birds and bats.

'Disperse abroad in the land': the role of wildlife in the dissemination of antimicrobial resistance.

Antimicrobial resistance (AMR) has been detected in the microbiota of many wildlife species, including long-distance migrants. Inadequately treated wastes from humans and livestock dosed with antimicrobial drugs are often assumed to be the main sources of AMR to wildlife. While wildlife populations closely associated with human populations are more likely to harbour clinically important AMR related to that found in local humans and livestock, AMR is still common in remote wildlife populations with little direct human influence. Most reports of AMR in wildlife are survey based and/or small scale, so researchers can only speculate on possible sources and sinks of AMR or the impact of wildlife AMR on clinical resistance. This lack of quantitative data on the flow of AMR genes and AMR bacteria across the natural environment could reflect the numerous AMR sources and amplifiers in the populated world. Ecosystems with relatively simple and well-characterized potential inputs of AMR can provide tractable, but realistic, systems for studying AMR in the natural environment. New tools, such as animal tracking technologies and high-throughput sequencing of resistance genes and mobilomes, should be integrated with existing methodologies to understand how wildlife maintains and disperses AMR.

Simple settlement decisions explain common dispersal patterns in territorial species.

Dispersal is one of the least-understood aspects of animal behaviour. For example, little is known of the mechanisms that determine how individuals express different dispersal behaviours in response to different circumstances. Uncovering these mechanisms is important for our understanding of spatial population dynamics. Using agent-based simulations, we examine how simple decision rules generate individual-level dispersal plasticity, and how this can influence population-scale dispersal dynamics. We model a territorial, monogamous population inhabiting a completely homogeneous environment. Dispersal variability therefore emerges solely as a result of between-individual interactions (competition, settlement, reproduction), which are governed by simple decision-making algorithms. We show that complex dispersal dynamics, including sex biases and strong density dependence, emerge naturally from simple rule-based behaviours. Dispersal is particularly sensitive to the inclusion of mate availability as a criterion for settlement: if neither sex evaluates mate availability, dispersal distances tend to decline at low densities, leading to a strong Allee effect from reduced pairing success. If one sex evaluates mate availability (females), Allee effects are largely avoided, but female-biased dispersal generates increasingly male-biased adult sex ratios at low densities. Sex biases are eliminated if both sexes evaluate mate availability, but population growth rates tend to be reduced due to survival costs and reduced pairing success. Our models suggest that simple decision mechanisms can explain several dynamic patterns that are commonly observed among territorial species. Importantly, these patterns emerge in the absence of environmental heterogeneity or between-individual variation in dispersal phenotypes, two conditions that are often invoked to explain dispersal heterogeneity in nature. This has implications for studies seeking to examine the causes of dispersal variability in wild populations, suggesting that observed patterns could be largely driven by the social and demographic conditions experienced by sampled individuals. Further insights could be gained by examining how selection operates on decision rules in different life-history and environmental circumstances, and how this might interact with selection on other demographic traits. Uncovering the decision rules used during settlement should be a priority for those wishing to understand and predict dispersal patterns in nature.

Dispersal spectrum of four forest types along an altitudinal range of the Brazilian Atlantic Rainforest / Espectro de dispersão de quatro formações florestais ao longo de um gradiente altitudinal da Mata Atlântica brasileira

In ecological communities, the proportion of plant species with different dispersal syndromes is known as the dispersal spectrum, which can result from different selective pressures such as climate. This is because variations in temperature, humidity, atmospheric pressure and precipitation result in distinct flora and fauna among different sites. If climate conditions along an altitudinal range act as a strong direct or indirect selective pressure on dispersal syndromes, the dispersal spectrum among plant communities in different altitudes should be distinct. We organized the dispersal syndromes in five hierarchical levels according to the levels of detail in diaspore morphology and, consequently, different degrees of specificity to the dispersers. Then we identified, within each hierarchical level, the syndromes of tree species of four forest types of the Atlantic Rainforest along a 1200 m altitudinal range in Southeast Brazil. Among 327 species, we found two syndromes in the most general hierarchical level (abiotic and biotic dispersal), three in the following level (wind, self and animal), three in the intermediate level (barochory, autochory and endozoochory), two in the forth level (mammal and bird), and 12 syndromes in the most specific level, all of which were related to the morphology of diaspores dispersed by wind, autochory, mammals and birds. The dispersal spectrum in the five hierarchical levels was similar among the four forest types. Overall, the majority of species is dispersed by biotic agents, considered here as animals and the parent plant itself. Within biotic agents, the most important are animals, specifically birds. Most bird-dispersed species present drupoid diaspores. Our results indicate that the selective pressures on dispersal syndromes originated from climate conditions that vary with altitude are not strong, hence resulting in the same dispersal spectrum among the forest types.

Dentro de uma comunidade, a proporção de espécies vegetais com diferentes síndromes de dispersão é chamada de espectro de dispersão, o qual pode resultar de distintas pressões seletivas, como o clima. Isso ocorre porque variações na temperatura, umidade, pressão atmosférica e precipitação resultam em flora e fauna distintas entre locais. Assim, podemos esperar que o espectro de dispersão de comunidades vegetais em diferentes altitudes seja distinto se as condições climáticas ao longo do gradiente altitudinal atuarem como pressão seletiva direta ou indireta sobre as síndromes. Nós hierarquizamos as síndromes de dispersão em cinco níveis, de acordo com o detalhamento da morfologia dos diásporos e, consequentemente, seus diferentes graus de especificidade com os dispersores. Identificamos, em cada um dos níveis hierárquicos, as síndromes de espécies arbóreas de quatro formações florestais da Mata Atlântica ao longo de um gradiente altitudinal de 1200 m no sudeste do Brasil. Entre 327 espécies, encontramos duas síndromes no nível hierárquico mais geral (dispersão abiótica e biótica), três no nível seguinte (vento, própria planta parental e animais), três no nível intermediário (barocoria, autocoria e endozoocoria), duas no quarto nível (mamíferos e aves) e 12 síndromes no nível mais específico, relacionadas è morfologia dos diásporos dispersos pelo vento, autocoria, mamíferos e aves. O espectro de dispersão nos cinco níveis foi similar nas quatro formações florestais. De forma geral, a maior parte das espécies é dispersa por agentes bióticos, aqui considerados animais e a própria planta parental. Dentre os agentes bióticos, os mais importantes são os animais, especificamente as aves. A maioria das espécies dispersas pelas aves apresenta diásporos drupóides. Nossos resultados indicam que as pressões seletivas sobre as síndromes de dispersão ocasionadas pelas condições climáticas que variam com a altitude não são fortes. Assim, a ausência destas pressões seletivas resulta em um espectro de dispersão similar entre as formações florestais em diferentes altitudes.

Peduncles elicit large-mammal endozoochory in a dry-fruited plant.

BACKGROUND AND AIMS: Plants have evolved a variety of seed dispersal mechanisms to overcome lack of mobility. Many species embed seeds in fleshy pulp to elicit endozoochory, i.e. disseminating seed through the animal gut. In contrast to well-studied fleshy fruited plants, dry-fruited plants may exploit this dispersal mutualism by producing fleshy appendages as a nutritional reward to entice animals to swallow their diaspores, but this has been little studied. In this study, it is hypothesized that these accessory fruits represent co-adaptations facilitating the syndrome of mammalian endozoochorous dispersal. METHODS: Field observations (focal tree watches, faecal surveys and fruiting phenology) with experimental manipulations (examination of seed germination and feeding trials) were conducted over 2 years in a native population of the raisin tree, Hovenia dulcis, which produces enlarged, twisted brown peduncles with external black seeds, in central China. KEY RESULTS: Birds were not observed to swallow seeds or carry infructescences away during 190 h of focal tree watches. However, H. dulcis seeds were detected in 247 faecal samples, representative of two herbivore and four carnivore mammalian species. Feeding trials revealed that peduncles attracted mammals to consume the entire infructescence, thereby facilitating effective seed dispersal. The germination rate of egested seeds proved higher than that of unconsumed seeds. It was also noted that this mutualism was most vulnerable in degraded forest. CONCLUSIONS: Hovenia dulcis peduncle sets are confirmed to adapt primarily to mammalian endozoochory, a mutualistic association similar in function to fleshy pulp or foliage. This demonstrates that plant organ systems can be adapted to unique mutualisms that utilize animal dispersal agents. Such an ecological role has until now been attributed only to bird epizoochory. Future studies should consider more widely the putative role of peduncle sets and mammalian endozoochory as a dispersal mechanism, particularly for those plants that possess relatively large accessory fruits.