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1.
J Biomed Inform ; 151: 104601, 2024 03.
Article in English | MEDLINE | ID: mdl-38307358

ABSTRACT

OBJECTIVE: The recent SARS-CoV-2 pandemic has exhibited diverse patterns of spread across countries and communities, emphasizing the need to consider the underlying population dynamics in modeling its progression and the importance of evaluating the effectiveness of non-pharmaceutical intervention strategies in combating viral transmission within human communities. Such an understanding requires accurate modeling of the interplay between the community dynamics and the disease propagation dynamics within the community. METHODS: We build on an interaction-driven model of an airborne disease over contact networks that we have defined. Using the model, we evaluate the effectiveness of temporal, spatial, and spatiotemporal social distancing policies. Temporal social distancing involves a pure dilation of the timeline while preserving individual activity potential and thus prolonging the period of interaction; spatial distancing corresponds to social distancing pods; and spatiotemporal distancing pertains to the situation in which fixed subgroups of the overall group meet at alternate times. We evaluate these social distancing policies over real-world interactions' data and over history-preserving synthetic temporal random networks. Furthermore, we evaluate the policies for the disease's with different number of initial patients, corresponding to either the phase in the progression of the infection through a community or the number of patients infected together at the initial infection event. We expand our model to consider the exposure to viral load, which we correlate with the meetings' duration. RESULTS: Our results demonstrate the superiority of decreasing social interactions (i.e., time dilation) within the community over partial isolation strategies, such as the spatial distancing pods and the spatiotemporal distancing strategy. In addition, we found that slow-spreading pathogens (i.e., pathogens that require a longer exposure to infect) spread roughly at the same rate as fast-spreading ones in highly active communities. This result is surprising since the pathogens may follow different paths. However, we demonstrate that the dilation of the timeline considerably slows the spread of the slower pathogens. CONCLUSIONS: Our results demonstrate that the temporal dynamics of a community have a more significant effect on the spread of the disease than the characteristics of the spreading processes.


Subject(s)
COVID-19 , Humans , COVID-19/epidemiology , Physical Distancing , SARS-CoV-2 , Pandemics , Policy
2.
J Pediatric Infect Dis Soc ; 12(Supplement_2): S9-S13, 2023 Dec 26.
Article in English | MEDLINE | ID: mdl-38146857

ABSTRACT

BACKGROUND: Reported community transmission rates of coronavirus disease 2019 (COVID-19) may not be accurate, particularly since at-home testing has become widely available. School absenteeism may serve as a marker of broader community COVID-19 transmission. METHODS: We performed an observational study of North Carolina kindergarten through 12th grade schools participating in the ABC Science Collaborative that offered in-school instruction, and contributed severe acute respiratory syndrome coronavirus 2 data for at least 2 of 4 weeks monthly for the 2021-2022 academic year. Additionally, we analyzed publicly available databases including the North Carolina Department of Public Instruction, Centers for Disease Control and Prevention COVID-19 Data Repository, and National Center for Education Statistics. We described community and school COVID-19 infection rates compared with student monthly absenteeism rates to determine if the relationship between community COVID-19 infection rates and student absenteeism varied over time. RESULTS: We included 500 192 students from 27 school districts. For the 2021-2022 academic year, the student and community COVID-19 infection rates did not show a significant difference (P > .05) across each month of comparison. Student absenteeism rates and community COVID-19 infection rates by month showed a similar trend across the academic year. For every 1% increase in community infection percentage, we found a 1.68% (1.12-2.25%) increase in absenteeism (P < .001); for every 1 month change in time, we found a 0.12% (0.01-0.24%) increase in absenteeism (P < .05). CONCLUSIONS: Student absenteeism and infection rates may be a useful marker of COVID-19 community infection rates when testing frequency and results reporting are inconsistent.


Subject(s)
Absenteeism , COVID-19 , United States , Humans , COVID-19/epidemiology , Students , Schools , Educational Status
3.
Article in Chinese | WPRIM (Western Pacific) | ID: wpr-923958

ABSTRACT

Objective To investigate the prevalence of nosocomial infection among inpatients in a tertiary hospital, and provide scientific evidence for hospital infection control and targeted surveillance. Methods A cross-sectional survey was conducted to investigate a total of 543 hospitalized patients using the hospital information system. Results The prevalence of hospital-acquired infection (HAI) was 4.24%, and that of community-acquired infection (CAI) was 23.39%. HAI prevalence differed significantly among the departments ( χ 2=148.870, P <0.05), and was highest in the department of intensive care medicine (72.73%). Sites of infection were significantly different between HAI and CAI ( χ 2=22.942, P =0.011); however, the most frequent site of infection was lower respiratory tract in both HAI and CAI. Major pathogens for nosocomial infection were Gram-negative bacteria (56.92%), mainly Escherichia coli and Klebsiella pneumoniae . Antimicrobial usage was observed in 31.68% of the patients, principally for therapeutic use of antibacterial drugs (80.23%) and a combination of drugs (88.95%). Examination rate of pathogens following the antimicrobial usage was 72.08%. Conclusion The investigation on the prevalence of nosocomial infection may facilitate fully understanding the nosocomial infection. It warrants strengthening the monitoring in the departments of intensive care medicine and on multi-resistant bacteria, and achieving antimicrobial stewardship, so as to improve the awareness of hospital infection control in medical staff' and effectively reduce the occurrence of nosocomial infection.

4.
Article in Chinese | WPRIM (Western Pacific) | ID: wpr-923936

ABSTRACT

Objective To investigate the prevalence of nosocomial infection among inpatients in a tertiary hospital, and provide scientific evidence for hospital infection control and targeted surveillance. Methods A cross-sectional survey was conducted to investigate a total of 543 hospitalized patients using the hospital information system. Results The prevalence of hospital-acquired infection (HAI) was 4.24%, and that of community-acquired infection (CAI) was 23.39%. HAI prevalence differed significantly among the departments ( χ 2=148.870, P <0.05), and was highest in the department of intensive care medicine (72.73%). Sites of infection were significantly different between HAI and CAI ( χ 2=22.942, P =0.011); however, the most frequent site of infection was lower respiratory tract in both HAI and CAI. Major pathogens for nosocomial infection were Gram-negative bacteria (56.92%), mainly Escherichia coli and Klebsiella pneumoniae . Antimicrobial usage was observed in 31.68% of the patients, principally for therapeutic use of antibacterial drugs (80.23%) and a combination of drugs (88.95%). Examination rate of pathogens following the antimicrobial usage was 72.08%. Conclusion The investigation on the prevalence of nosocomial infection may facilitate fully understanding the nosocomial infection. It warrants strengthening the monitoring in the departments of intensive care medicine and on multi-resistant bacteria, and achieving antimicrobial stewardship, so as to improve the awareness of hospital infection control in medical staff' and effectively reduce the occurrence of nosocomial infection.

5.
Chinese Journal of Neonatology ; (6): 413-417, 2022.
Article in Chinese | WPRIM (Western Pacific) | ID: wpr-955269

ABSTRACT

Objective:To study the clinical characteristics of neonatal community-acquired Novel Coronavirus (COVID-19) Omicron variant infection.Methods:From March 30 to May 15, 2022, the epidemiological characteristics, clinical manifestations and outcomes of neonatal cases of community-acquired COVID-19 Omicron variant infection admitted to the isolation ward of our hospital were analyzed.Results:A total of 7 neonates infected with community-acquired COVID-19 Omicron variant were treated, including 3 males and 4 females. All of them were term infants with clear epidemiological exposure history. The infection was originated from caregivers of close contact (parents or babysitters). The main clinical symptoms was upper respiratory tract infection, including fever (6 cases), nasal congestion (6 cases), cough (5 cases), runny nose (2 cases), poor appetite (2 cases) and diarrhea (1 case). On admission, no abnormalities were found in blood routine examination and C-reactive protein (CRP). All but one case had normal serum amyloid A (SAA). No obvious abnormalities were found on chest X-ray. All patients were isolated in single-patient rooms after admission. They received standard symptomatic treatment and regular nucleic acid tests. The first negative nucleic acid results came on median 17 d(8~26 d) after the onset of the disease. The patients were discharged after two consecutive (24 h apart) nucleic acid tests with CT value ≥35 and continued health-monitor at home. On discharge, 5 patients had nasal congestion and 2 of them had cough. During the follow-up 4~6 weeks after discharge, all patients gradually recovered without positive nucleic acid results.Conclusions:All 7 neonates with community-acquired COVID-19 Omicron variant infection have epidemiological exposure history. The main clinical symptoms are long-lasting upper respiratory tract infections. It takes a relatively long time for the nucleic acid to turn negative, however, the overall short-term prognosis is good.

6.
Article in English | MEDLINE | ID: mdl-34299740

ABSTRACT

Since the outbreak of COVID-19, many parts of the world have fallen into deep recession. Governments in every country have adopted various measures to restrict social gatherings due to the need to control the pandemic. This includes restrictions on activities in homes and communities. Fundamentally, epidemic prevention relies on the measures individuals take. A community's epidemic prevention measures become more critical as activities are held in houses or communities once again. From the perspective of the theory of planned behavior, this study investigates whether the various epidemic prevention measures and characteristics of a community affect residents' perception of epidemic prevention. We use the truncated regression model as the primary research method. The empirical results show that the community's epidemic prevention measures can change residents' awareness of the importance of epidemic prevention. Moreover, the scale of the community and management committee are also found to have a partial impact.


Subject(s)
COVID-19 , Housing , Humans , Pandemics , Perception , SARS-CoV-2
7.
Rev. cuba. pediatr ; 93(2): e1079, tab
Article in Spanish | LILACS, CUMED | ID: biblio-1280375

ABSTRACT

Una manera para lograr más efectividad en la decisión terapéutica en recién nacidos que cursan con infecciones, es tener conocimiento del microorganismo causal más común, según el tipo de infección por la cual cursa el paciente. Por ello el médico debe estar familiarizado con el mapa microbiológico de la institución donde trabaja y estar actualizado en el espectro de microorganismos habituales que informa la literatura, así como aquellos emergentes y reemergentes. Se revisa el estado actual de reportes de frecuencia de los microorganismos causales en recién nacidos con infecciones, tomados de la literatura médica nacional e internacional con el propósito de orientar al médico de asistencia del posible microorganismo causal más probable en base a la clínica del paciente y además, a tomar la clasificación de las infecciones como herramienta que aporta una guía de los agentes que afectan con más frecuencia al paciente recién nacido, y los factores de riesgo asociados. Se concluye que es factible y beneficioso este enfoque que le permite al médico asistencial ser más efectivo en la decisión del tratamiento a seguir. Es su deber estar familiarizado con el mapa microbiológico de la institución donde trabaja y estar actualizado en el espectro de microorganismos habituales que informa la literatura, así como aquellos emergentes y reemergentes(AU)


One way to achieve more effectiveness in therapeutic decisions related to newborns with infections is to be aware of the most common causal microorganism, depending on the type of infection the patient is suffering. Therefore, the physician should be familiar with the microbiological map of the institution where he/she works and be updated in the spectrum of common microorganisms reported by the literature, as well as those emerging and re-emerging. The current status of frequency reports of causal microorganisms in newborns with infections, taken from national and international literature, is reviewed to guide the assistance physician on the most likely possible causal microorganism based on the patient's clinic and also to use the classification of infections as a tool that provides guidance on the agents that most often affect the newborn patients, and associated risk factors. It is concluded that this approach that allows the assistance physician to be more effective in the decision of treatment to follow is feasible and beneficial. It is the physician's duty to be familiar with the microbiological map of the institution where he/she works and be updated on the spectrum of common microorganisms reported by the literature, as well as those emerging and re-emerging(AU)


Subject(s)
Humans , Infant, Newborn , Therapeutics , Effectiveness , Risk Factors , Knowledge
8.
BMC Pediatr ; 21(1): 118, 2021 03 09.
Article in English | MEDLINE | ID: mdl-33750330

ABSTRACT

BACKGROUND: Aspergillus infection is more common among premature infants in neonatal intensive care units, who have decreased qualitative immune defenses and need various invasive treatment procedures. It is rare in normal full-term neonates, especially in newborn babies from the community. Moreover, the white blood cell (WBC) count and C-reactive protein (CRP) level may be normal or slightly changed in fungal infections, but the neonate reported in this study had significant increases in WBC and CRP. To the best of our knowledge, this is the first report on a full-term neonate from the community with aspergillus infection accompanied by significant increases in WBC and CRP levels. CASE PRESENTATION: A 28-day-old infant, who received empirical antibiotic treatment for 10 days because of neonatal pneumonia, was referred to our neonatal department from the local hospital. The infant had persistent infection and multiple organ failure syndromes. Bronchoscopy and deep sputum smear were performed to identify the pathogen, which confirmed aspergillus infection in the sputum. Fluconazole was immediately administered, but the baby died after three days. Thereafter, an autopsy was performed with parental consent. There were multiple necrotic areas in the lungs and liver, and pathological examination revealed aspergillus. CONCLUSIONS: The present case emphasized that community-sourced aspergillus infection can exist in full-term neonates, with significantly increased WBC count and CRP level. Advanced antibiotics were not effective in this case, and fungal infections should have been considered earlier.


Subject(s)
Aspergillosis , Community-Acquired Infections , Aspergillosis/diagnosis , Aspergillosis/drug therapy , Aspergillus , C-Reactive Protein/analysis , Community-Acquired Infections/diagnosis , Community-Acquired Infections/drug therapy , Humans , Infant , Infant, Newborn , Leukocyte Count
9.
J Hosp Infect ; 106(3): 554-561, 2020 Nov.
Article in English | MEDLINE | ID: mdl-32717202

ABSTRACT

BACKGROUND: Clostridioides difficile infection (CDI) is associated with high healthcare demands and related costs. AIM: To evaluate the healthcare and economic burden of CDI in hospitalized patients with community- (HOCA-CDI) or hospital-associated CDI (HOHA-CDI) in the National Health Service in Scotland. METHODS: A retrospective cohort study was conducted, examining data between August 2010 and July 2013 from four patient-level Scottish datasets, linked to death data. Data examined included prior antimicrobial prescriptions in the community, hospitalizations, length of stay and mortality. Each CDI case was matched to three hospital-based controls on the basis of age, gender, hospital and date of admission. Descriptive economic evaluations were based on bed-day costs for different types of wards. FINDINGS: Overall, 3304 CDI cases were included in the study. CDI was associated with additional median lengths of stay of 7.2 days for HOCA-CDI and 12.0 days for HOHA-CDI compared with their respective, matched controls. The 30-day mortality rate was 6.8% for HOCA-CDI and 12.4% for HOHA-CDI. Overall, recurrence within 90 days of the first CDI episode occurred in 373/2740 (13.6%) survivors. The median additional expenditure for each initial CDI case compared with matched controls was £1713. In the 6 months after the index hospitalization, the cost associated with a CDI case was £5126 higher than for controls. CONCLUSION: Using routinely collected national data, we demonstrated the substantial burden of CDI on healthcare services, including lengthy hospital stays and readmissions, which increased the costs of managing patients with CDI compared with matched controls.


Subject(s)
Clostridium Infections/economics , Cost of Illness , Health Care Costs/statistics & numerical data , Health Services/economics , Adolescent , Adult , Aged , Aged, 80 and over , Anti-Bacterial Agents/therapeutic use , Clostridium Infections/drug therapy , Clostridium Infections/epidemiology , Cross Infection/economics , Cross Infection/microbiology , Female , Hospitalization/economics , Humans , Length of Stay/economics , Male , Middle Aged , Proportional Hazards Models , Retrospective Studies , Scotland/epidemiology , Young Adult
11.
J Hosp Infect ; 2020 Oct 24.
Article in English | MEDLINE | ID: mdl-34756867

ABSTRACT

COVID-19 caused by SARS-CoV-2 is a worldwide problem. From the standpoint of hospital infection control, determining the source of infection is critical. We conducted the present study to evaluate the efficacy of using whole genome sequencing to determine the source of infection in hospitalized patients who do not have a clear infectious contact history. Recently, we encountered two seemingly separate COVID-19 clusters in a tertiary hospital. Whole viral genome sequencing distinguished the two clusters according to the viral haplotype. However, the source of infection was unclear in 14 patients with COVID-19 who were clinically unlinked to clusters #1 or #2. These patients, who had no clear history of infectious contact within the hospital ("undetermined source of infection"), had haplotypes similar to those in cluster #2 but did not have two of the mutations used to characterize cluster #2, suggesting that these 14 cases of "undetermined source of infection" were not derived from cluster #2. Whole viral genome sequencing can be useful for confirming that sporadic COVID-19 cases with an undetermined source of infection are indeed not part of clusters at the institutional level.

12.
Front Microbiol ; 10: 1599, 2019.
Article in English | MEDLINE | ID: mdl-31396168

ABSTRACT

Acinetobacter baumannii A118, a strain isolated from the blood of an infected patient, is naturally competent and unlike most clinical strains, is susceptible to a variety of different antibiotics including those usually used for selection in genetic manipulations. These characteristics make strain A118 a convenient model for genetic studies of A. baumannii. To identify potential virulence factors, its complete genome was analyzed and compared to other A. baumannii genomes. A. baumannii A118 includes gene clusters coding for the acinetobactin and baumannoferrin iron acquisition systems. Iron-regulated expression of the BauA outer membrane receptor for ferric-acinetobactin complexes was confirmed as well as the utilization of acinetobactin. A. baumannii A118 also possesses the feoABC genes, which code for the main bacterial ferrous uptake system. The functionality of baumannoferrin was suggested by the ability of A. baumannii A118 culture supernatants to cross feed an indicator BauA-deficient strain plated on iron-limiting media. A. baumannii A118 behaved as non-motile but included the csuA/BABCDE chaperone-usher pilus assembly operon and produced biofilms on polystyrene and glass surfaces. While a known capsular polysaccharide (K) locus was identified, the outer core polysaccharide (OC) locus, which belongs to group B, showed differences with available sequences. Our results show that despite being susceptible to most antibiotics, strain A118 conserves known virulence-related traits enhancing its value as model to study A. baumannii pathogenicity.

13.
Philos Trans R Soc Lond B Biol Sci ; 374(1776): 20180267, 2019 07 08.
Article in English | MEDLINE | ID: mdl-31104607

ABSTRACT

Norovirus (NoV) is the most commonly recognized cause of acute gastroenteritis, with over a million cases globally per year. While usually self-limiting, NoV poses a substantial economic burden because it is highly contagious and there are multiple transmission routes. Infection occurs through inhalation of vomitus; faecal-oral spread; and food, water and environmental contamination. While the incidence of the disease is predictably seasonal, much less is known about the relative contribution of the various exposure pathways in causing disease. Additionally, asymptomatic excretion and viral shedding make forecasting disease burden difficult. We develop a novel stochastic dynamic network model to investigate the contributions of different transmission pathways in multiple coupled social networks representing schools, hospitals, care-homes and family households in a community setting. We analyse how the networks impact on transmission. We used ward-level demographic data from Northumberland, UK to create a simulation cohort. We compared the results with extant data on NoV cases from the IID2 study. Connectivity across the simulated cohort was high. Cases of NoV showed marked seasonality, peaking in early winter and declining through the summer. For the first time, we show that fomites and food appear to be the most important exposure routes in determining the population burden of disease. This article is part of the theme issue 'Modelling infectious disease outbreaks in humans, animals and plants: epidemic forecasting and control'. This theme issue is linked with the earlier issue 'Modelling infectious disease outbreaks in humans, animals and plants: approaches and important themes'.


Subject(s)
Caliciviridae Infections/transmission , Caliciviridae Infections/virology , Models, Biological , Norovirus , Rare Diseases , Seasons , Caliciviridae Infections/epidemiology , Disease Outbreaks , Environmental Microbiology , Food Microbiology , Gastroenteritis/virology , Humans
14.
New Microbes New Infect ; 23: 17-27, 2018 May.
Article in English | MEDLINE | ID: mdl-29692906

ABSTRACT

Klebsiella spp. isolates from community-acquired infections were characterized. A total of 39 Klebsiella spp. isolates were obtained from outpatients at four rural hospitals in Mexico (2013-2014). The biochemical tests identified all as being K. pneumoniae. The molecular multiplex-PCR test identified 36 (92.4%) K. pneumoniae isolates and one (2.5%) K. variicola isolate, and phylogenetic analysis of the rpoB gene identified two isolates (5.1%) belonging to K. quasipneumoniae subsp. quasipneumoniae and K. quasivariicola. The last one was confirmed by phylogenetic analysis of six-loci concatenated genes. Mostly the isolates were multidrug resistant; however, a minority were extended-spectrum ß-lactamase producing (10.2%). The extended-spectrum ß-lactamase CTX-M-15 gene was identified in these isolates. Analysis of biofilm production and the hypermucoviscosity phenotype showed a total of 35 (92.3%) and seven (17.9%) of the isolates were positive for these phenotypes respectively. The K2 (4/39, 10.2%), K5 (2/39, 5.1%) and K54 (1/39, 2.5%) serotypes were identified in seven (17.9%) of the isolates, and only 28.5% (2/7) hypermucoviscous isolates were positive for the K2 and K5 serotypes. In general, the sequence type (ST) analysis and phylogenetic analysis of seven multilocus sequence typing loci were heterogeneous; however, ST29 was the most prevalent ST in the analysed isolates, accounting for 19% (4/21) of the total isolates. Two of the four ST29 isolates had the hypermucoviscosity phenotype. The virulence factors for fimbriae were the most prevalent, followed by siderophores. Community-acquired infections are caused by various species from Klebsiella genus, with different profiles of antibiotic resistance and heterogeneous virulence factors.

15.
Chongqing Medicine ; (36): 2966-2968,2972, 2016.
Article in Chinese | WPRIM (Western Pacific) | ID: wpr-604429

ABSTRACT

Objective To investigate the distribution of carbapenem‐resistant Acinetobacter baumannii(CRAB) infections and its resistance to commonly used antibacterial drugs to provide a basis for infection control and rational use of antibacterial drugs in this area .Methods The clinical data and drug susceptibility test results in the patients with CRAB infection in our hospital from January 1 ,2013 to December 31 ,2014 were retrospectively analyzed .Results Eighteen strains of CRAB in community‐acquired in‐fection and 140 strains of CRAB in nosocomial infection were isolated ,the resistance rates to piperacillin/tazobactam ,gentamicin and tobramycin were higher than 80% ,which to ampicillin/sulbactam and levofloxacin were 64 .5% and 48 .2% respectively ,which to compound SMZ and amikacin were lower than 25% .The distribution of drug sensitivity results had no statistical difference between community CRAB infection and nosocomial CRAB infection (P>0 .05) .Conclusion The CRAB infection is mainly nosocomial in‐fection ,the empirical therapy could select compound SMZ and amikacin .

16.
Int J Infect Dis ; 37: 36-41, 2015 Aug.
Article in English | MEDLINE | ID: mdl-26092300

ABSTRACT

BACKGROUND: Clostridium difficile infection (CDI) is a common cause of nosocomial diarrhoea. People in the general community are not usually considered to be at risk of CDI. CDI is associated with a high risk of morbidity and mortality. The risk of severity is defined by the Clostridium Severity Index (CSI). METHODS: The cases of 136 adult patients with CDI treated at the University Hospital of Tours, France between 2008 and 2012 are described. This was a retrospective study. RESULTS: Among the 136 patients included, 62 were men and 74 were women. Their median age was 64.4 years (range 18-97 years). Twenty-six of the 136 (19%) cases were community-acquired (CA) and 110 (81%) were healthcare-acquired (HCA). The major risk factors for both groups were long-term treatment with proton pump inhibitors (54% of CA, 53% of HCA patients) and antibiotic treatment within the 2.5 months preceding the CDI (50% of CA, 91% of HCA). The CSI was higher in the CA-CDI group (1.56) than in the HCA-CDI group (1.39). Intensive care was required for 8% of CA-CDI and 16.5% of HCA-CDI patients. CONCLUSIONS: CDI can cause community-acquired diarrhoea, and CA-CDI may be more severe than HCA-CDI. Prospective studies of CDI involving people from the general community without risk factors are required to confirm this observation.


Subject(s)
Clostridioides difficile/isolation & purification , Clostridium Infections/embryology , Community-Acquired Infections/epidemiology , Cross Infection/epidemiology , Adolescent , Adult , Aged , Aged, 80 and over , Clostridioides difficile/immunology , Clostridium Infections/mortality , Community-Acquired Infections/mortality , Cross Infection/mortality , Diarrhea/epidemiology , Diarrhea/virology , Female , France/epidemiology , Hospitals, University , Humans , Long-Term Care , Male , Middle Aged , Prospective Studies , Retrospective Studies , Risk Factors , Young Adult
17.
Transpl Infect Dis ; 17(3): 477-80, 2015 Jun.
Article in English | MEDLINE | ID: mdl-25819745

ABSTRACT

We observed a cluster of 4 pediatric liver recipients who developed diarrhea in a liver transplant unit within 5 days. Feces from these 4 patients were rotavirus positive when tested with Colloidal Gold Diagnostic Kit. Nucleic acid from 3 fecal specimens was extracted and reverse transcribed. Two were amplified positively. The complementary DNAs were sequenced. Alignment and phylogenetic analysis were performed with MEGA 6.06. Although involving only 4 pediatric liver recipients, this cluster was caused by at least 2 distinct G9P[8] rotavirus strains and included community infection and nosocomial infection.


Subject(s)
Liver Transplantation/adverse effects , Rotavirus Infections/epidemiology , Rotavirus/isolation & purification , Base Sequence , Community-Acquired Infections , Cross Infection , Diarrhea , Feces/virology , Female , Genotype , Humans , Infant , Male , Molecular Sequence Data , Phylogeny , Rotavirus/genetics , Rotavirus Infections/virology , Sequence Analysis, DNA
18.
The Journal of Practical Medicine ; (24): 2898-2901, 2015.
Article in Chinese | WPRIM (Western Pacific) | ID: wpr-481860

ABSTRACT

Objective To analyze the clinical data of Staphylococcus aureus sputum culture positive cases and the antimicrobial susceptibility of Staphylococcus aureus strains isolated from them and provide the evidence for clinical diagnosis and treatment. Methods Retrospectively analyze the clinical data of Staphylococcus aureus sputum culture positive cases of our hospital from January 2014 to December 2014. Results The Staphylococcus aureus sputum culture positive cases was 111 in all, while antimicrobial sensitive test was performed in 110 cases, including MSSA in 27 cases (24.55%), MSRA in 83 cases (74.45%), community infection MSRA in 13 cases (15.66%), hospital infection MRSA in 70 cases (84.34%). The cases were mainly from the department of respiratory diseases, department of neurosurgery, ICU, the department of neurology, accounting for 75.68%. The risk rate of community acquired MRSA in patients from nursing center were significantly higher than that of hospital infection MRSA and MSSA (P = 0.004). The antimicrobial susceptibility rate of community infection MRSA to clindamycin, gentamicin, erythromycin, azithromycin was higher than that of hospital infection MRSA. Conclusion The susceptibility rate in non-β-lactams of community infeciton MRSA was higher than that of hospital infection MRSA.

19.
Article in Chinese | WPRIM (Western Pacific) | ID: wpr-476292

ABSTRACT

Objective To understand the drug resistance of Escherichiacoli in the bloodstream infections from community infec-tion and hospital infection,in order to provide the basis for clinical rational drug use.Methods According to the CLSI 2013 stran-dard,VITEK-2GN and AST-GN13 cards from France Bio-merieux company were used to identify the bacteria and analyze the drug susceptibility.The data was analyzed by SPSS 13.0.Results A total of 181 strains of Escherichiacoli were isolated from communi-ty-acquired and hospital-acquired bloodstream infections from January to December in 2014.There were 88 strains of community in-fection and 93 strains of hospital infection.The rates of ESBLs (+)strains isolated from community infection and hospital infection were 53.4% and 73.1% respectively.The ESBLs (+)rate of Escherichiacoli isolated from community infection was significantly lower than that from hospital infection (P =0.006).Antibiotics of resistance less than 10% in 181 strains of Escherichiacoli were Cefoperazone/Sulbactam,Piperacillin/Tazobactam,Ertapenem,Imipenem,Amikacin.The resistant rate of Hospital infection strains was generally higher than that of community infection strains.The ESBLs (+)rate of Escherichiacoli isolated from bloodstream in-fections of Urology Surgery wsa higher than that of other departments.Conclusion The drug resistance of Escherichiacoli in the bloodstream infections from hospital infection is higher than that from community infection.Using antibiotics rationally and strengthening the nosocomial infection surveillance of ICU and Surgery Ward are effective measures to control the bacterial drug re-sistance.

20.
Chongqing Medicine ; (36): 827-829, 2015.
Article in Chinese | WPRIM (Western Pacific) | ID: wpr-460916

ABSTRACT

Objective To investigate and analysis the prevalence rate of hospital infection and community infection,and to reduce the incidence of hospital infection.Methods First we investigated hospitalized patients in September 9,2013 by two ways which in-clude bedside investigation and reviewing the medical records;and then described the prevalence case of infection and the usage of antimicrobial agent by descriptive approach.Results Seven hundred and seventy patients were investigated with the rate of 100.00%;18 patients were hospital infection cases,the infection rate was 2.34%;most of the hospital infection cases was occur in lower respiratory tract;228 patients were community infection cases.The infection rate was 29.61%;the primary affected areas of community infection were respiratory and gastrointestinal tract;the structure of hospital infection pathogens were almost the same with the community infection,most of them were G- bacteria;186 patients were used antimicrobial agent in that day,the usage rate was 24.16%.Conclusion Promoting the managements of high risk departments and susceptible affected areas,making relevant rules of operation are the focus of our works in the future.

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