ABSTRACT
PubChem ( https://pubchem.ncbi.nlm.nih.gov ) is a key chemical information resource, developed and maintained by the US National Institutes of Health. The present chapter describes how to find potential multitarget ligands from PubChem that would be tested in further experiments. While the protocol presented here uses PubChem's Web-based interfaces to allow users to follow it interactively, it can also be implemented in computer software by using programmatic access interfaces to PubChem (such as PUG-REST or E-Utilities).
Subject(s)
Databases, Chemical , Drug Discovery/methods , Internet , Pharmaceutical Preparations/metabolism , Software , Humans , Ligands , National Institutes of Health (U.S.) , Pharmaceutical Preparations/chemistry , United States , User-Computer InterfaceABSTRACT
The retrieval and download of bibliographic information from PubMed were realized using the standard URL interfaces of ESearch and EFetch in E-utilities open programming interface of NCBI.the process and key code can provide reference for searching data from NCBI Database and realizing their deep development and further use.
ABSTRACT
Repetitive sequences such as SINE, LINE, and LTR elements form a major part of eukaryotic genomes. A literature search tool that summarizes the information contained within repeat elements would provide biologists in the field of genomics with a useful tool for analyzing genomic sequence features. We developed a java program designed to make literature access easier by using two search engines simultaneously. RepWeb is a web-based search system that provides a user friendly interface for searching the reference data and journals for information related to repeat elements by using the search engines, Google Scholar and PubMed, simultaneously. It provides an interface that displays the repeat element- related biological information, and includes useful functions such as the production of a repeat tree, clickable links to PubMed and Google Scholar, exporting, and sorting a field into date, author, journal and title.