Visual search of illusory contours: The role of illusory contour clarity.

Illusory contours demonstrate an important function of the visual system-object inference from incomplete boundaries, which can arise from factors such as low luminance, camouflage, or occlusion. Illusory contours can be perceived with varying degrees of clarity depending on the features of their inducers. The present study aimed to evaluate whether illusory contour clarity influences visual search efficiency. Experiment 1 compared visual search performance for Kanizsa illusory stimuli and nonillusory inducer stimuli when manipulating inducer size as a clarity factor. Experiment 2 examined the effects of illusory contour clarity on visual search by manipulating the number of rings with missing arcs (i.e., line ends) comprising the inducers, for both illusory and nonillusory stimuli. To investigate whether surface alterations had an impact on visual search in Experiment 1, Experiment 3 examined search performance for Kanizsa-like stimuli formed from "smoothed" inducers compared with standard Kanizsa figures. The results of Experiments 1 and 2 indicated that while Kanizsa produced inefficient search, this was not contingent on the clarity of the illusory contours. Experiment 3 suggested that surface alterations of Kanizsa figures did impact visual search performance. Together, the results indicated that illusory contour clarity did not have much bearing on search performance. In certain conditions, Kanizsa figures even facilitated search compared with nonillusory stimuli, suggesting that rather than contour inference, surface features might have greater relevance in guiding visual attention.

Area of Feasible Figures of Merit (AF-FOMs) for second-order multivariate calibrations in Multivariate Curve Resolution (MCR).

BACKGROUND: The significance and necessity of using powerful multivariate curve resolution (MCR) techniques in the study and investigation of chemical systems are clear and obvious. It has long been recognized the importance of using second-order data to extract both quantitative and qualitative information in analytical chemistry through multivariate calibration instead of univariate calibration. Although the calculation of analytical figures of merit (AFOMs) in multivariate calibrations seems to be complicated, in recent years these parameters have been reported for each developed analytical method based on multivariate calibrations. RESULTS: It is well-known that using MCR to analyze second-order data may not produce a unique solution, a phenomenon associated with rotational ambiguity, which leads to the existence of a region or area of feasible solutions (AFS). This fact led us to argue that, instead of having uniquely defined AFOMs (sensitivity, selectivity, limit of detection, limit of quantitation, etc.), there should be an AFOM for every possible solution in the AFS. Following this argument, we report for the first time the generation of the Area of Feasible FOMs (AF-FOMs). The existence of a range of different FOMs in the AFS can be fully interpreted. It can also be predicted which AFOMs will have maximum or minimum values in each feasible band, and what kind of incremental or decremental changes will occur. Herein, the systematic grid search method was used to compute all feasible solutions and to calculate the AFOMs inside the feasible band. SIGNIFICANCE: The claims were supported by analyzing artificially generated two-component data sets. The data sets include a single calibrated analyte and a single uncalibrated interferent, which was only present in the test samples. In addition, real experimental data aimed at the determination of therapeutic drugs in both water and human urine samples were analyzed. Finally, the arguments were generalized to a three-component simulated system, having a single analyte and two uncalibrated interferents.

Choosing Suitable Color Palettes for Accessible and Accurate Science Figures.

In a scientific context, a suitable color choice is more than simple decoration. Color handling, as part of scientific visualization, is a scientific methodology that is one of the most widely used, given the importance of figures and images in conveying results. Yet, an expert-level understanding and application of proper scientific coloring is rare. Here, a concise overview of important color tools is provided and complemented by ready-to-apply resources for using color in science research, publishing, communication, tool development, editing, and teaching. This overview offers a guide to spot problems, master the methodology, and support accessible and accurate use of color for science figures in both short and long terms. © 2024 The Author(s). Current Protocols published by Wiley Periodicals LLC.

A dataset on eye movement tracking during the resolution of neuropsychological tests on a screen.

The dataset provides data obtained with eye-tracking while 55 volunteers solved 3 distinct neuropsychological tests on a screen inside a closed room. Among the 55 volunteers, 22 were women and 33 were men, all with ages ranging between 9 and 50, and 5 of whom were diagnosed with Attention Deficit Hyperactivity Disorder (ADHD) [1]. The eye-tracker used for the collection of the data was an EyeTribe, which has a sampling rate of 60 Hz and an average visual angle between 0.5 and 1, which correspond to an on-screen error between 0.5 and 1cm (0.1969 to 0.393 inches aprox) respectively, when the distance to the user is around 60cm (23.62 in) [2], which was the case during the collection of these data. The neuropsychological tests were implemented in a software named NEURO-INNOVA KIDS® [3], which are the following: a domino test adapted from the D-48 intelligence test [4], an adaptation of the MASMI test consisting of unfolded cubes [5], the figures series completion test adapted from [6], and the Poppelreuter figures test [7]. Before each of the tests, a calibration process was performed, ensuring that the visual angle error was less than or equal to 0.5 cm (0.1969 in), which is considered an acceptable calibration. The collective mean duration of the four administered tests amounted to 20 minutes. This dataset exhibits significant promise for potential utilization due to the extensive prevalence of these neuropsychological assessments among healthcare practitioners for evaluating diverse cognitive faculties in individuals. Moreover, it has been empirically established that poor performance on these tests is associated with attention deficits [8].

Can Mitotic Figures in Hyperchromatic Crowded Groups be Cytodiagnostic Criteria for High-Grade Squamous Intra-epithelial Lesions?

Aims: The present study aimed to investigate whether the presence of mitoses in hyperchromatic crowded groups (HCGs) in cervical cytological specimens can serve as cytological criteria for high-grade squamous intra-epithelial lesions (HSILs). Methods and Material: Various parameters were examined, including the frequency of mitotic figures per high power field (HPF) in Pap, hematoxylin eosin (HE) samples, and PHH3 immunocytochemical (ICC) and immunohistochemical (IHC) analyses. Results: In the Pap and PHH3-ICC samples, the number of mitotic figures observed in HCGs was significantly higher in HSIL (P < 0.001) compared to other groups. Furthermore, the frequency of observing two or more mitoses was significantly higher in HSIL (Pap: P = 0.002, PHH3-ICC: P < 0.001) than in low-grade squamous intra-epithelial lesions (LSILs). Moreover, a comparison between Pap samples and PHH3-ICC showed that the frequency of two or more mitoses was significantly higher in the PHH3-ICC analysis of HSIL (P = 0.042). Regarding HE and PHH3-IHC samples, counting the number of mitoses in the lower and middle/upper layers of the squamous epithelial layer revealed that HSIL had a significantly higher value (HE: P = 0.0089, PHH3-IHC: P = 0.0002) than LSIL in the middle/upper layers. Conclusions: Hence, the presence of two or more mitotic figures in HCGs per HPF in cervical cytology indicates a suspicion of HSIL. The detection of mitoses in PHH3-ICC samples is more sensitive and easier to observe than in Pap samples, making it a valuable mitotic marker.

Lightning deaths in three outdoor dogs: A case study.

This case report presents findings in three German Shepherd placed outdoor, dead after a night of thunderstorm.

The 1000 Mitoses Project: A Consensus-Based International Collaborative Study on Mitotic Figures Classification.

Introduction. The identification of mitotic figures is essential for the diagnosis, grading, and classification of various different tumors. Despite its importance, there is a paucity of literature reporting the consistency in interpreting mitotic figures among pathologists. This study leverages publicly accessible datasets and social media to recruit an international group of pathologists to score an image database of more than 1000 mitotic figures collectively. Materials and Methods. Pathologists were instructed to randomly select a digital slide from The Cancer Genome Atlas (TCGA) datasets and annotate 10-20 mitotic figures within a 2 mm2 area. The first 1010 submitted mitotic figures were used to create an image dataset, with each figure transformed into an individual tile at 40x magnification. The dataset was redistributed to all pathologists to review and determine whether each tile constituted a mitotic figure. Results. Overall pathologists had a median agreement rate of 80.2% (range 42.0%-95.7%). Individual mitotic figure tiles had a median agreement rate of 87.1% and a fair inter-rater agreement across all tiles (kappa = 0.284). Mitotic figures in prometaphase had lower percentage agreement rates compared to other phases of mitosis. Conclusion. This dataset stands as the largest international consensus study for mitotic figures to date and can be utilized as a training set for future studies. The agreement range reflects a spectrum of criteria that pathologists use to decide what constitutes a mitotic figure, which may have potential implications in tumor diagnostics and clinical management.

Measuring the similarity of charts in graphical statistics.

Figures used in statistics and other sciences play a vital role in understanding and analyzing the problems under study. Due to the complexity and diversity of these problems, figures such as cartograms, choropleth maps, or radar charts take various geometric forms. Their visual evaluation from the view of geometric similarity is essential but insufficient. This paper proposes and theoretically justifies new metrics based on graph theory. They make it possible to quickly determine the degree of similarity of the statistical figures used in the research procedure. The new metrics were used to 1. Determine the similarity of the domestic route networks of major U.S. airlines, 2. Determine the similarity of the distribution of votes cast in U.S. presidential election in each state in 2016 and 2020, 3. Compare radar charts of some countries, constructed based on the Global Competitiveness Index, 4. Analyze the similarity of neutrosophic double line graphs representing sets of approximate (neutrosophic) numbers. This improves analytical capabilities concerning various processes mapped with well-known types of statistical charts, such as choropleth maps, radar charts, etc.

TreeViewer: Flexible, modular software to visualise and manipulate phylogenetic trees.

Phylogenetic trees illustrate evolutionary relationships between taxa or genes. Tree figures are crucial when presenting results and data, and by creating clear and effective plots, researchers can describe many kinds of evolutionary patterns. However, producing tree plots can be a time-consuming task, especially as multiple different programs are often needed to adjust and illustrate all data associated with a tree. We present TreeViewer, a new software to draw phylogenetic trees. TreeViewer is flexible, modular, and user-friendly. Plots are produced as the result of a user-defined pipeline, which can be finely customised and easily applied to different trees. Every feature of the program is documented and easily accessible, either in the online manual or within the program's interface. We show how TreeViewer can be used to produce publication-ready figures, saving time by not requiring additional graphical post-processing tools. TreeViewer is freely available for Windows, macOS, and Linux operating systems and distributed under an AGPLv3 licence from https://treeviewer.org. It has a graphical user interface (GUI), as well as a command-line interface, which is useful to work with very large trees and for automated pipelines. A detailed user manual with examples and tutorials is also available. TreeViewer is mainly aimed at users wishing to produce highly customised, publication-quality tree figures using a single GUI software tool. Compared to other GUI tools, TreeViewer offers a richer feature set and a finer degree of customisation. Compared to command-line-based tools and software libraries, TreeViewer's graphical interface is more accessible. The flexibility of TreeViewer's approach to phylogenetic tree plotting enables the program to produce a wide variety of publication-ready figures. Users are encouraged to create their own custom modules to expand the functionalities of the program. This sets the scene for an ever-expanding and ever-adapting software framework that can easily adjust to respond to new challenges.

Prolepsis and Rendering Futures in Intergovernmental Panel on Climate Change Reports.

Rhetorical figures of speech provide important analytical frames to chart how arguments operate within genres and within genre ecologies. Varieties of the figure prolepsis allow for the rendering of future time or fact in the present, which can be a powerful rhetorical inducement toward social and political action. In this article, we examine how anticipatory arguments drawn from complex data shape a key genre for public and policy-facing work on the climate crisis-the Intergovernmental Panel on Climate Change's Synthesis Report's (SYR) Statement for Policy Makers (SPM). We examine how the rhetorical figure of prolepsis operates within this genre to understand the anticipatory arguments and logics emerging from the synthesis of scientific findings and their reporting. Pairing figural studies and Rhetorical Genre Studies, we further offer an approach to investigate how these patterned operations of language might intersect in their rhetorical workings.

A 15-year review of lightning deaths in Germany-with a focus on pathognomonic findings.

Lethal accidents caused by lightning are divided into observed and unobserved events. Pathognomonic or characteristic findings are often overlooked during external postmortem examination. Classical mistakes may be made which may often lead to an incorrect diagnosis. An analysis of 270 fatalities was performed on a historical collection of the Committee for Lightning Conductor Construction for the United Economic Area e. V. (ABBW) on lethal accidents due to lightning that occurred in Germany for the period 1951-1965. Furthermore, a selective literature research was carried out. The aim of the study was to analyze the death scene, the clothing, and the victim. The authors focused on chief findings which were relevant to the correct diagnosis of "death by lightning." Both Lichtenberg figures and singed body hair were considered pathognomonic for a lightning strike. The question arose as to whether Lichtenberg figures, for example, represented the finding that most often led to the correct diagnosis. Of the 270 lightning-struck victims from the case collection, 129 (47.8%) had singed body hair and 25 (9.3%) had Lichtenberg figures. A comparison of the frequency of the two reported findings, singed body hair versus Lichtenberg figures, has only been performed in the literature for case numbers below 40. This study is the first evaluation of a relatively large number of lethal accidents due to lightning. Singed body hair was reported more frequently in lightning-struck victims than Lichtenberg figures. This study showed that singed body hair is probably more diagnostically important than Lichtenberg figures.

Grading medullary thyroid carcinoma on fine-needle aspiration cytology specimens with the International Medullary Thyroid Carcinoma Grading System: A cytologic-histologic correlation.

BACKGROUND: Medullary thyroid carcinoma (MTC) is a rare cancer of parafollicular C-cell origin. The International MTC Grading System (IMTCGS) incorporates mitotic activity, the presence of necrosis, and the Ki67 proliferation rate (PR) to classify MTCs as low or high grade. The ability to predict IMTCGS grade in cytology was assessed. METHODS: MTCs with cytology and subsequent surgical follow-up were reviewed. Cytology slides were reviewed for mitotic figures, apoptoses, and necrosis, and a Ki67 PR was calculated when possible. Findings were correlated with final IMTCGS grade. RESULTS: Twenty-five MTC fine-needle aspirations (FNAs) were identified, with nine identified as high grade (36%). By using a PR cutoff of 5%, Ki67 on FNA material (Ki67FNA) showed 92% concordance (n = 22 of 24) with surgical Ki67 and a correlation coefficient (R2) of 0.72. Sensitivity and specificity of Ki67FNA for predicting high-grade MTC were 38% and 100%, respectively. Multiple mitotic figures were present in a single slide of 43% (n = 3 of 7) of evaluable high-grade MTCs, whereas only one of 16 low-grade MTCs showed a single mitotic figure. Definitive apoptoses were present in five of seven high-grade MTC FNAs but were absent in 16 low-grade MTCs. The sensitivity and specificity of apoptoses/necrosis on cytology for high-grade MTCs were 71% and 88%, respectively. CONCLUSIONS: Ki67FNA ≥5% shows low sensitivity but high specificity for predicting high-grade MTC. The presence of multiple mitotic figures in a single slide or definitive apoptotic bodies are both highly suggestive of high-grade MTC, and should warrant a close examination for necrosis and a careful Ki67 PR count.

Low-grade sinonasal non-intestinal-type adenocarcinoma: a rare case report and literature review.

Sinonasal non-intestinal-type adenocarcinoma is a rare but important differential diagnosis in patients presenting with recurrent, unexplained epistaxis. Low-grade types have a more favourable prognosis as opposed to the more aggressive high-grade. Symptoms include nasal obstruction and epistaxis that can last up to 5 years. We report a case of a rare low-grade sinonasal non-intestinal-type adenocarcinoma in a 43-year-old male who is frequently exposed to wood and dust particles. Endoscopy revealed right nasal mass occupying the entire nasal cavity as well as inferior turbinate hypertrophy and mass attached to the nasal septum on computed tomography. Biopsy confirmed the diagnosis and was classified as pT1NX with the presence of mitotic figures, which are more commonly present in the high-grade subtype.

Local Crystallographic Texture of a Nummulite (Foraminifera) Test from the Eocene Deposits of the Crimea Peninsula.

Unicellular protozoa form calcium carbonate tests. It is important to understand the features and mechanisms of its formation. This may shed light on the processes of shell formation in metazoans. One of the most important characteristics of the Protozoa carbonate test is the degree of crystal ordering that can be described by crystallographic texture. The crystallographic texture data of calcite in the foraminifera Nummulites distans (Deshayes) test from the Eocene deposits (Cenozoic, Paleogene) of the Crimea Peninsula are obtained using X-ray diffraction. A very strict orientation of the crystals is revealed. The calcite texture sharpness is several times greater than in the shells of the bivalve mollusk Placuna placenta (Linnaeus), measured by the same method. It also exceeds the crystallographic texture and sharpness of the same mineral in the shells of the bivalves of Mytilus galloprovincialis (Lamarck), studied by neutron diffraction. It is concluded that a high level of control during test formation is already characteristic of protozoa. Studying the processes involved in the formation of a very sharp crystallographic texture can become an important direction for creating nature-like materials with desired properties.

pathCLIP: Detection of Genes and Gene Relations from Biological Pathway Figures through Image-Text Contrastive Learning.

In biomedical literature, biological pathways are commonly described through a combination of images and text. These pathways contain valuable information, including genes and their relationships, which provide insight into biological mechanisms and precision medicine. Curating pathway information across the literature enables the integration of this information to build a comprehensive knowledge base. While some studies have extracted pathway information from images and text independently, they often overlook the correspondence between the two modalities. In this paper, we present a pathway figure curation system named pathCLIP for identifying genes and gene relations from pathway figures. Our key innovation is the use of an image-text contrastive learning model to learn coordinated embeddings of image snippets and text descriptions of genes and gene relations, thereby improving curation. Our validation results, using pathway figures from PubMed, showed that our multimodal model outperforms models using only a single modality. Additionally, our system effectively curates genes and gene relations from multiple literature sources. A case study on extracting pathway information from non-small cell lung cancer literature further demonstrates the usefulness of our curated pathway information in enhancing related pathways in the KEGG database.

Microfluidic Blood Separation: Key Technologies and Critical Figures of Merit.

Blood is a complex sample comprised mostly of plasma, red blood cells (RBCs), and other cells whose concentrations correlate to physiological or pathological health conditions. There are also many blood-circulating biomarkers, such as circulating tumor cells (CTCs) and various pathogens, that can be used as measurands to diagnose certain diseases. Microfluidic devices are attractive analytical tools for separating blood components in point-of-care (POC) applications. These platforms have the potential advantage of, among other features, being compact and portable. These features can eventually be exploited in clinics and rapid tests performed in households and low-income scenarios. Microfluidic systems have the added benefit of only needing small volumes of blood drawn from patients (from nanoliters to milliliters) while integrating (within the devices) the steps required before detecting analytes. Hence, these systems will reduce the associated costs of purifying blood components of interest (e.g., specific groups of cells or blood biomarkers) for studying and quantifying collected blood fractions. The microfluidic blood separation field has grown since the 2000s, and important advances have been reported in the last few years. Nonetheless, real POC microfluidic blood separation platforms are still elusive. A widespread consensus on what key figures of merit should be reported to assess the quality and yield of these platforms has not been achieved. Knowing what parameters should be reported for microfluidic blood separations will help achieve that consensus and establish a clear road map to promote further commercialization of these devices and attain real POC applications. This review provides an overview of the separation techniques currently used to separate blood components for higher throughput separations (number of cells or particles per minute). We present a summary of the critical parameters that should be considered when designing such devices and the figures of merit that should be explicitly reported when presenting a device's separation capabilities. Ultimately, reporting the relevant figures of merit will benefit this growing community and help pave the road toward commercialization of these microfluidic systems.

Developmental figures: an attempt at conceptualization and classification.

The subject of this paper deals with the theoretical area of personality psychology and life-span psychology. This paper presents a novel approach to the social context of personal development, as a certain terminological gap regarding the category of the developmental figure has been observed. I propose that the developmental figure be defined, analogically to the attachment figure or the transition figure, as an individual who has significant meaning to another person's psychosocial development. Developmental figures can be categorized on the basis of various criteria; for example, based on the type of implications for development we can identify progressive and regressive figures; based on the strength of the influence we identify primary and secondary figures; based on the type of social relation we can identify direct and indirect figures; and based on the duration of the influence we can identify sporadic and frequent interactions.

Camouflage Detection and Its Association with Cognitive Style: A Functional Connectivity Study.

Background: Individual differences exist in performance in tasks that require visual search, such as camouflage detection (CD). Field dependence/independence (FD/I), as assessed using the Group Embedded Figures Test (GEFT), is an extensively studied dimension of cognitive style that classifies participants based on their visual perceptual styles. Materials and Methods: In the present study, we utilized fMRI on 46 healthy participants to investigate the underlying neural mechanisms specific to the cognitive styles of FD/FI while performing a CD task using both activation magnitude and an exploratory functional connectivity (FC) analysis. Group differences between high and low performers on the two extremes of the accuracy continuum of GEFT were studied. Results: No statistically significant group differences were observed using whole-brain voxel-wise comparison. However, the exploratory FC analysis revealed an enhanced communication between various regions subserving the cognitive traits required for visual search by FI participants over and above their FD counterparts. Conclusion: These enhanced connectivities suggest additional recruitment of cognitive functions to provide computational support that might facilitate superior performance in CD task by the participants who display a field-independent cognitive style.

General Figures of Merit ZQ for Thermoelectric Generators Under Constant Heat-In Flux Boundary.

The thermoelectric figure of merit ZT bridges the efficiency and material parameters for a thermoelectric device operating under constant temperature of the hot- and cold-source thermal boundary (Type-I TB). However, many application scenarios fall under the constant heat-in flux (qh ) and constant cold-source temperature (Tc ) thermal boundary (Type-II TB), for which a figure of merit is absent for more than half a century. This study aims to fill this gap and propose a figure of merit ZQD for the thermoelectric devices under the Type-II TB condition, defined as Z Q D = ( Z T c Z T c + 1 ) ( h κ ) ( q h T c ) $Z{Q}_{\mathrm{D}} = ( {\frac{{Z{T}_{\mathrm{c}}}}{{Z{T}_{\mathrm{c}} + 1}}} )( {\frac{h}{\kappa }} )( {\frac{{{q}_{\mathrm{h}}}}{{{T}_{\mathrm{c}}}}} )$ , where Z, h, and κ are the traditional figure of merit, leg height, and thermal conductivity, respectively. The effectiveness of ZQD is verified through both numerical calculations and experiments, which are more accurate and practical than ZT. Furthermore, a system-level figure of merit ZQS is suggested after considering the external thermal resistance. Finally, optimization strategies for thermoelectric systems based on ZQS are proposed, showing a 30% enhancement in the efficiency. ZQD and ZQS are expected to be widely used in the thermoelectric field.