High-throughput amplicon sequencing datasets of the metacommunity DNA of the gut microbiota of Zebrafish Danio rerio fed diets with differential quantities of protein and fat contents.

In this paper, we present high-throughput amplicon sequence (HTS) datasets of the gut microbiota of male and female Zebrafish Danio rerio fed diets consisting of sub-optimal and above-optimal quantities of proteins and fats. The HTS datasets were generated using an Illumina MiSeq targeting the V4 hypervariable segment of the 16S rRNA gene. The raw sequence reads were quality checked, demultiplexed into FASTQ files, denoised using DADA2 (q2-dada2 denoise-paired), and subsampled. Taxonomic ids were then assigned to amplicon sequence variants (ASVs) against the silva-138-99-nb-classifier for taxonomic output using the Quantitative Insights Into Microbial Ecology (QIIME2 v2021.4). The resultant taxa list was generated at the phylum level to confirm the applicability of the HTS dataset using the "qiime taxa collapse" command. These HTS datasets of the metagenome can be accessed through the BioSample Submission Portal (https://www.ncbi.nlm.nih.gov/bioproject/) under the BioProject IDs PRJNA772302 and PRJNA772305.

Evaluation of Formulated Diets Enriched by Spinach Extracts for the Broodstock Females, Portunus pelagicus (Linnaeus, 1758).

BACKGROUND AND OBJECTIVE: Spinach extract (Amaranthacea tricolor) is a very prospective feed raw materials to stimulate the molting and growth of crab female broodstock. The purpose of this study was to evaluate the quality of broodstock females, Portunus pelagicus (Linnaeus, 1758) at different levels of spinach extract based on physical, organoleptic and chemical tests. MATERIALS AND METHODS: Four different treatments of spinach extract (0, 250, 500 and 750 ng g-1 crab, respectively) were used in this study. The female crab samples were collected from coastal region of Padang, West Sumatera and placed randomly in four concrete tanks (200×100×100 cm). Each concrete tank consist of five units of plastic box (45.5×32.5×16.5 cm) with the maximum density was one crab per box. RESULTS: The organoleptic test showed that formulated diets enriched with spinach extract (0, 250 and 500 ng g-1 crab) had a smooth texture, pungent aroma and brown. Whereas from the physics test results obtained good water stability (rupture velocity ranged from 89.20-105.40 min and solids dispersion ranged from 4.97-7.17%), hardness (92.66-98.07%) and sinking velocity (3.88-5.88 cm sec-1) (p<0.05). The results also showed that formulated diet enriched with spinach extract doses of 250-750 ng g-1 crab gave a value of delicacy of feed (0.195-0.386 g crab-1 weight/day) which was significantly different (p<0.05) with 0 ng g-1 crab (0.445 g crab-1 weight/day). The chemical test shows the moisture content were 11.60%, ash 9.31%, protein 44.38%, fat 7.64% and carbohydrate 14.46%. CONCLUSION: It was concluded that there was a linear relationship between dose of spinach extracts in formulated diet and rupture velocity and a quadratic relationship between dose of spinach extracts in formulated diet and solid disperse, hardness and sinking velocity and delicacy of feed.

Response to different dietary carbohydrate and protein levels of pearl oysters (Pinctada fucata martensii) as revealed by GC-TOF/MS-based metabolomics.

Land-based culturing can avoid the effects of environmental pollution and natural disasters, thus ensuring food safety for shellfish. However, food availability, in this case, is limited. To achieve the optimum balance of dietary carbohydrates and proteins and explore the mechanisms behind the phenomenon, we formulated five isoenergetic and isolipidic diets (C30P40, C35P35, C40P30, C45P25, and C50P20) with different levels of carbohydrates (C) and proteins (P). There were five experimental groups (C30P40, C35P35, C40P30, C45P25, and C50P20) and two control groups (CG1 and CG2). CG1 was fed with mixed powders of yeast and Chlorella sp., and CG2 was cultured in natural sea. After 60-day feeding, the highest rates of survival and absolute growth appeared in C45P25. C45P25 exhibited significantly higher activities of amylase, protease, alkaline phosphatase, acid phosphatase, superoxide dismutase, catalase, glutathione peroxidase, and phenoloxidase and significantly lower malondialdehyde content than C30P40, C35P35, C40P30, C50P20, and CG1. No significant differences were observed between C45P25 and CG2. Furthermore, the total antioxidant capacity of the pearl oysters in C45P25 was significantly higher than that in C30P40, C35P35, C40P30, and C50P20. On the basis of these results, the optimal balance of proteins and carbohydrates for pearl oysters was the C45P25 diet. Metabolomics-based profiling of the pearl oysters fed with high-carbohydrate/low-protein diet (C45P25) and low-carbohydrate/high-protein diet (C30P40) revealed 80 significantly different metabolites (VIP > 1 and P < 0.05). Furthermore, integrated key metabolic pathway analysis showed that C45P25 regulated starch and sucrose metabolism, alanine, aspartate and glutamate metabolism and glycine, serine and threonine metabolism to meet the energy demand and increase the glucogenic amino acid, thereby promoting protein synthesis and reducing fatty acid ß-oxidation in comparison with C30P40. This finding helps elucidate the underlying mechanisms leading to the high-carbohydrate/low-protein diet characteristic of the optimal dietary carbohydrate and protein levels of P. f. martensii.

Metabolomics Responses of Pearl Oysters (Pinctada fucata martensii) Fed a Formulated Diet Indoors and Cultured With Natural Diet Outdoors.

Natural disasters and environmental pollution are the main problems in traditional offshore cultivation. While culturing pearl oysters through industrial farming can avoid these problems, food availability in this case is limited. This study compares the metabolomics responses of pearl oysters, Pinctada fucata martensii, fed a formulated diet indoors with those of oysters cultured with natural diet outdoors by using a gas chromatography time-of-flight mass spectrometry (GC-TOF/MS)-based metabolomics approach. The animals were divided into two groups as follows: the experimental group (EG) was fed a formulated diet indoors and the control group (CG) was cultured with natural diet outdoors. After 45 days of feeding, the survival rate of EG was significantly higher than that of CG. The absolute growth rate (AGR) of the total weight of EG did not significantly differ from that of CG, but the AGRs of the shell length, shell height, and shell width of CG were significantly higher than those of EG. EG showed significantly higher amylase activities than CG, and the hexokinase and glucose-6-phosphate isomerase concentrations of the former were significantly lower than those of the latter. Metabolomics revealed 125 metabolites via mass spectrum matching with a spectral similarity value > 700 in the hepatopancreas, and 48 metabolites were considered to be significantly different between groups (VIP > 1 and P < 0.05). Pathway analysis results indicated that these significantly different metabolites were involved in 34 pathways. Further integrated key metabolic pathway analysis showed that, compared with CG, EG had lower capabilities for cysteine and methionine metabolism, sulfur metabolism, and starch and sucrose metabolism. This study demonstrated that the formulated diet could be an excellent substitute for natural diet; however, its nutrients were insufficient. Effective strategies should be developed to enhance the utilization of formulated diets.

Pilot study evaluating the efficacy, tolerance and safety of a peptide-based enteral formula versus a high protein enteral formula in multiple ICU settings (medical, surgical, cardiothoracic).

INTRODUCTION: Predigested, peptide-based enteral formulas are commonly used to promote GI tolerance in critically ill patients, but studies comparing these against polymeric enteral formulas are lacking. We performed a prospective, randomized clinical comparison pilot study to assess safety, tolerance and effectiveness of a peptide-based enteral product. METHODS: Critically ill patients from ICUs, including medical, surgical, and cardiothoracic, were randomized to either of two enteral feeding products: Group A: Peptide-based, high Protein, high omega-3 fat (Vital AF®, Abbott Nutrition); Group B: high protein standard enteral formula (Osmolite®, Abbott Nutrition). Tolerance and comorbidities as well as enteral feeding volume were collected at baseline and then daily for up to 21 days, or until the patient was discharged from the ICU. RESULTS: A total of 49 patients were included, 25 (51%) on group A, 24 (49%) on group B. Adverse events and undesired gastrointestinal events at baseline and mean intake (ml/d and percent of goal) post baseline were not different between the groups. There were significantly fewer days with adverse events (p = 0.0336, odds ratio = 3.02, standard error = 1.60, n = 24 per group) and undesired gastrointestinal events (p = 0.0489, odds ratio = 2.79, standard error = 1.48, n = 24 per group) in group A. There was no difference in other clinical outcomes. CONCLUSION: This pilot study suggests that feeding a peptide-based formula to ICU patients may be associated with a statistically significant reduction in the number of days during which adverse events occurred as compared to a standard formula.

Feed of Siamese fighting fish, Betta splendens, (Regan, 1910) in open pond: live and formulated diets / Alimentação do peixe-de-briga, Betta splendens (Regan, 1910) em tanque externo de cultivo: dieta natural e formulada

Abstract The growth rate and percent survival of Betta splendens when submitted to formulated diet and live food treatments are evaluated. The three different diets were used and designated as: formulated diet (basal diet); live food diet (plankton) and mixed diet (formulated diet with plankton). The live food diet contained plankton belonging to an open pond. High mortality was reported with live food (plankton) treatment whereas higher percent survival occurred with formulated diet. Highest specific growth rate, weight gain and final weight were reported in the mixed diet treatment and were significantly different (p<0.01) from those in formulated diet and live food treatments. The gut contents of B. splendens in mixed diet and live food treatments comprised, Rotifera and Bacillariophyceae species in high percentages or rather, over 78% of total organisms. Lecane sp. was the most ingested zooplankton species by B. splendens in both treatments (mixed diet and live food), with the phytoplankton species Asterionella sp. and Melosira sp. respectively in mixed diet and in live food, respectively. Results indicated that the formulated diet influenced the water parameters dissolved oxygen, total suspended solids, total dissolved solids and pH. The live food in the open pond was not enough to improve the growth rate and percent survival of B. splendens. The growth performance of B. splendens; had the best results with mixed diet which was capable of maintaining species’s survival (82%) and development in artificial conditions, benefiting the culture management of ornamental fish.

Resumo Foi avaliado o crescimento e sobrevivência de Betta splendens, quando submetidos à dieta formulada e alimento vivo. Foram utilizadas três dietas experimentais e designadas como: dieta formulada (ração); alimento vivo (plâncton) e dieta mista (ração com plâncton). O plâncton pertence ao tanque externo de cultivo. Alta mortalidade foi observada no tratamento com alimento vivo (plâncton) e a mais alta sobrevivência na dieta formulada. No tratamento com dieta mista foram observadas as maiores taxas de crescimento específico, ganho de peso e peso final, sendo significativamente diferentes (p<0,01) dos outros tratamentos. No conteúdo do trato digestório do B. splendens nos tratamentos dieta mista e alimento vivo, as espécies de Rotifera e Bacillariophyceae foram encontradas acima de 78% do total de organismos observados. Lecane sp. foi a espécie de zooplâncton mais ingerida por B. splendens em ambos os tratamentos (dieta mista e alimento vivo) e de fitoplâncton foi Asterionella sp. (dieta mista) e Melosira sp. (alimento vivo). Os resultados do presente estudo indicaram que a dieta formulada (ração) influenciou alguns parâmetros da água, como oxigênio dissolvido, sólidos totais solúveis, sólidos totais solúveis, sólidos totais suspensos e pH, e o alimento vivo não foi suficiente para incrementar o crescimento e a sobrevivência de B. splendens. A dieta mista promoveu o maior crescimento do B. splendens possibilitando a sobrevivência de 82% e, o desenvolvimento desta espécie em condições artificiais, beneficiando o manejo do cultivo deste peixe ornamental.