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1.
Plant Biol (Stuttg) ; 2024 Jul 05.
Article in English | MEDLINE | ID: mdl-38967306

ABSTRACT

Seed water imbibition is critical to seedling establishment in tropical forests. The seeds of the neotropical tree Hymenaea courbaril have no oil reserves and have been used as a model to study storage cell wall polysaccharide (xyloglucan - XyG) mobilization. We studied pathways of water imbibition in Hymenaea seeds. To understand seed features, we performed carbohydrate analysis and scanning electron microscopy. We found that the seed coat comprises a palisade of lignified cells, below which are several cell layers with cell walls rich in pectin. The cotyledons are composed mainly of storage XyG. From a single point of scarification on the seed surface, we followed water imbibition pathways in the entire seed using fluorescent dye and NMRi spectroscopy. We constructed composites of cellulose with Hymenaea pectin or XyG. In vitro experiments demonstrated cell wall polymer capacity to imbibe water, with XyG imbibition much slower than the pectin-rich layer of the seed coat. We found that water rapidly crosses the lignified layer and reaches the pectin-rich palisade layer so that water rapidly surrounds the whole seed. Water travels very slowly in cotyledons (most of the seed mass) because it is imbibed in the XyG-rich storage walls. However, there are channels among the cotyledon cells through which water travels rapidly, so the primary cell walls containing pectins will retain water around each storage cell. The different seed tissue dynamic interactions between water and wall polysaccharides (pectins and XyG) are essential to determining water distribution and preparing the seed for germination.

2.
J Asian Nat Prod Res ; : 1-6, 2024 Jun 11.
Article in English | MEDLINE | ID: mdl-38860491

ABSTRACT

Three new flavonoids including two isoflavanones sophortones A and B (1 and 2), and one chalcone sophortone C (3) were isolated from the roots of Sophora tonkinensis. Their structures were established by UV, IR, HRESIMS, and NMR data. The absolute configurations of 1 and 2 were determined by electronic circular dichroism (ECD) calculations.

3.
PhytoKeys ; 240: 1-552, 2024.
Article in English | MEDLINE | ID: mdl-38912426

ABSTRACT

Caesalpinioideae is the second largest subfamily of legumes (Leguminosae) with ca. 4680 species and 163 genera. It is an ecologically and economically important group formed of mostly woody perennials that range from large canopy emergent trees to functionally herbaceous geoxyles, lianas and shrubs, and which has a global distribution, occurring on every continent except Antarctica. Following the recent re-circumscription of 15 Caesalpinioideae genera as presented in Advances in Legume Systematics 14, Part 1, and using as a basis a phylogenomic analysis of 997 nuclear gene sequences for 420 species and all but five of the genera currently recognised in the subfamily, we present a new higher-level classification for the subfamily. The new classification of Caesalpinioideae comprises eleven tribes, all of which are either new, reinstated or re-circumscribed at this rank: Caesalpinieae Rchb. (27 genera / ca. 223 species), Campsiandreae LPWG (2 / 5-22), Cassieae Bronn (7 / 695), Ceratonieae Rchb. (4 / 6), Dimorphandreae Benth. (4 / 35), Erythrophleeae LPWG (2 /13), Gleditsieae Nakai (3 / 20), Mimoseae Bronn (100 / ca. 3510), Pterogyneae LPWG (1 / 1), Schizolobieae Nakai (8 / 42-43), Sclerolobieae Benth. & Hook. f. (5 / ca. 113). Although many of these lineages have been recognised and named in the past, either as tribes or informal generic groups, their circumscriptions have varied widely and changed over the past decades, such that all the tribes described here differ in generic membership from those previously recognised. Importantly, the approximately 3500 species and 100 genera of the former subfamily Mimosoideae are now placed in the reinstated, but newly circumscribed, tribe Mimoseae. Because of the large size and ecological importance of the tribe, we also provide a clade-based classification system for Mimoseae that includes 17 named lower-level clades. Fourteen of the 100 Mimoseae genera remain unplaced in these lower-level clades: eight are resolved in two grades and six are phylogenetically isolated monogeneric lineages. In addition to the new classification, we provide a key to genera, morphological descriptions and notes for all 163 genera, all tribes, and all named clades. The diversity of growth forms, foliage, flowers and fruits are illustrated for all genera, and for each genus we also provide a distribution map, based on quality-controlled herbarium specimen localities. A glossary for specialised terms used in legume morphology is provided. This new phylogenetically based classification of Caesalpinioideae provides a solid system for communication and a framework for downstream analyses of biogeography, trait evolution and diversification, as well as for taxonomic revision of still understudied genera.

4.
PhytoKeys ; 242: 333-348, 2024.
Article in English | MEDLINE | ID: mdl-38903849

ABSTRACT

Here, we describe a new species of Crotalaria L. discovered in Mengla County, Xishuangbanna Dai Autonomous Prefecture, Yunnan, China. The new species, Crotalariamenglaensis S.A.Rather, was confirmed by identifying diagnostic morphological characteristics, performing principal component analyses of phenotypic traits, and phylogenetic analyses based on nuclear ITS and plastid matK sequences. Phylogenetic analyses recovered the two accessions of the new species to be sister to C.bracteata Roxb. ex DC. In turn, these two species formed the sister clade to the two accessions of C.incana L. The morphometric analyses revealed that all three species were distinct, while the analyses of distinctive characters enabled unambiguous distinction of the new species by its growth habit, leaflets, flower structure and pod morphology. In contrast to the two related species, the new species is currently known only from ca. 100 mature individuals. Thus, this species is considered to be critically endangered.

5.
Ecol Evol ; 14(5): e11410, 2024 May.
Article in English | MEDLINE | ID: mdl-38770119

ABSTRACT

Campylotropis xinfeniae, a new species from the dry-hot valley of the Jinsha River in the Yunnan province, China, is described and illustrated. It is morphologically similar to C. wilsonii and C. brevifolia in having glabrescent old branches, absent stipels, 3-foliolate leaves, and adaxially puberulent leaflets, while it differs from the latter two in having often paniculate inflorescences, obviously white standard, not incurved sickle keel, larger narrowly oblique legumes, and longer legume beak. The complete chloroplast genome of this new species is 149,073 bp in length and exhibits a typical quadripartite structure. Phylogenetic analyses based on the complete chloroplast genome also supported C. xinfeniae as a new species located at the basal distinct clade of the genus Campylotropis, clearly separated from the remaining members of the genus and its allied genera. A conservation assessment of data deficient (DD) is recommended for the new species without extensive exploring of similar habitats according to the IUCN Categories and Criteria.

6.
Chem Biodivers ; 21(6): e202400399, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38634752

ABSTRACT

Four undescribed prenylated flavonoids, sophoratones A-D (1-4), and 17 known flavonoids, were obtained from the aerial parts of Sophora tonkinensis. Their structures with absolute configurations were elucidated by detailed interpretation of NMR spectroscopy, mass spectrometry, and ECD calculations. Meanwhile, the ability of these compounds to inhibit the release of nitric oxide (NO) by a lipopolysaccharide induced mouse in RAW 264.7 cells was assayed. The results indicated that some compounds exhibited clear inhibitory effects, with IC50 ranging from 19.91±1.08 to 35.72±2.92 µM. These results suggest that prenylated flavonoids from the aerial parts of S. tonkinensis could potentially be used as a latent source of anti-inflammatory agents.


Subject(s)
Flavonoids , Lipopolysaccharides , Nitric Oxide , Plant Components, Aerial , Sophora , Sophora/chemistry , Animals , Mice , Flavonoids/pharmacology , Flavonoids/isolation & purification , Flavonoids/chemistry , RAW 264.7 Cells , Plant Components, Aerial/chemistry , Nitric Oxide/antagonists & inhibitors , Nitric Oxide/metabolism , Nitric Oxide/biosynthesis , Lipopolysaccharides/pharmacology , Lipopolysaccharides/antagonists & inhibitors , Anti-Inflammatory Agents/pharmacology , Anti-Inflammatory Agents/chemistry , Anti-Inflammatory Agents/isolation & purification , Structure-Activity Relationship , Anti-Inflammatory Agents, Non-Steroidal/pharmacology , Anti-Inflammatory Agents, Non-Steroidal/chemistry , Anti-Inflammatory Agents, Non-Steroidal/isolation & purification , Molecular Structure , Dose-Response Relationship, Drug , Cell Survival/drug effects
7.
Biol Methods Protoc ; 9(1): bpae017, 2024.
Article in English | MEDLINE | ID: mdl-38566774

ABSTRACT

Object-oriented programming (OOP) embodies a software development paradigm grounded in representing real-world entities as objects, facilitating a more efficient and structured modelling approach. In this article, we explore the synergy between OOP principles and the TypeScript (TS) programming language to create a JSON-formatted database designed for storing arrays of biological features. This fusion of technologies fosters a controlled and modular code script, streamlining the integration, manipulation, expansion, and analysis of biological data, all while enhancing syntax for improved human readability, such as through the use of dot notation. We advocate for biologists to embrace Git technology, akin to the practices of programmers and coders, for initiating versioned and collaborative projects. Leveraging the widely accessible and acclaimed IDE, Visual Studio Code, provides an additional advantage. Not only does it support running a Node.js environment, which is essential for running TS, but it also efficiently manages GitHub versioning. We provide a use case involving taxonomic data structure, focusing on angiosperm legume plants. This method is characterized by its simplicity, as the tools employed are both fully accessible and free of charge, and it is widely adopted by communities of professional programmers. Moreover, we are dedicated to facilitating practical implementation and comprehension through a comprehensive tutorial, a readily available pre-built database at GitHub, and a new package at npm.

8.
Phytochemistry ; 222: 114105, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38657886

ABSTRACT

Three undescribed cassane diterpenoids, caesalpanins D-F (1-3), and seven known ones were isolated from the seeds of Caesalpinia sappan. Structures and absolute configurations of 1-3 were elucidated based on the extensive spectroscopic analysis, single-crystal X-ray diffraction analysis, and ECD calculations. Structurally, compound 1 was the first example of 18-norcassane diterpenoid and 2 was a rare 20-norcassane diterpenoid having an unusual five-membered oxygen bridge between C-10/C-18. The anti-proliferative activity of 1, 3, and 4-10 against PANC-1 cells (pancreatic ductal adenocarcinoma cell line) was evaluated, and phanginin H (4) was found to exhibit anti-cancer activity with IC50 value of 18.13 ± 0.63 µM. Compound 4 inhibited PANC-1 cell growth by arresting the cell cycle at G2/M phase via regulation of cyclin-dependent kinases, and the self-renewal and metastasis of PANC-1 cells by suppressing cancer cell stemness. Furthermore, compound 4 induced ROS generation and subsequently activated autophagy, which was demonstrated by the formation of autophagic vacuoles and dynamic change of autophagic flux. The induced ROS accumulation resulted in AMPK activation and subsequently regulation of mTORC1 activity and ULK phosphorylation, indicating that 4 triggered autophagy through ROS/AMPK/mTORC1 pathway. These findings suggested that 4 might potentially be an autophagy inducer for the therapy of pancreatic cancer.


Subject(s)
AMP-Activated Protein Kinases , Antineoplastic Agents, Phytogenic , Autophagy , Caesalpinia , Cell Proliferation , Diterpenes , Drug Screening Assays, Antitumor , Mechanistic Target of Rapamycin Complex 1 , Pancreatic Neoplasms , Reactive Oxygen Species , Seeds , Caesalpinia/chemistry , Humans , Diterpenes/pharmacology , Diterpenes/chemistry , Diterpenes/isolation & purification , Seeds/chemistry , Autophagy/drug effects , Reactive Oxygen Species/metabolism , Pancreatic Neoplasms/drug therapy , Pancreatic Neoplasms/pathology , Pancreatic Neoplasms/metabolism , AMP-Activated Protein Kinases/metabolism , Antineoplastic Agents, Phytogenic/pharmacology , Antineoplastic Agents, Phytogenic/isolation & purification , Antineoplastic Agents, Phytogenic/chemistry , Mechanistic Target of Rapamycin Complex 1/metabolism , Mechanistic Target of Rapamycin Complex 1/antagonists & inhibitors , Cell Proliferation/drug effects , Molecular Structure , Cell Line, Tumor , Structure-Activity Relationship , Dose-Response Relationship, Drug
9.
Ann Appl Biol ; 184(1): 19-36, 2024 Jan.
Article in English | MEDLINE | ID: mdl-38516560

ABSTRACT

The dried bean beetle, Acanthoscelides obtectus, is an economically important pest of stored legumes worldwide. Tracking the human-aided dispersion of its primary hosts, the Phaseolus vulgaris beans, it is now widespread in most bean-growing areas of the tropics and subtropics. In temperate regions where it can only occasionally overwinter in the field, A. obtectus proliferates in granaries, having multiple generations a year. Despite its negative impact on food production, no sensitive detection or monitoring tools exist, and the reduction of local populations still relies primarily on inorganic insecticides as fumigating agents. However, in the quest to produce more nutritious food more sustainably and healthily, the development of environmentally benign crop protection methods is vital against A. obtectus. For this, knowledge of the biology and chemistry of both the host plant and its herbivore will underpin the development of, among others, chemical ecology-based approaches to form an essential part of the toolkit of integrated bruchid management. We review the semiochemistry of the mate- and host-finding behaviour of A. obtectus and provide new information about the effect of seed chemistry on the sensory and behavioural ecology of host acceptance and larval development.

10.
Nat Prod Res ; : 1-13, 2024 Mar 07.
Article in English | MEDLINE | ID: mdl-38454320

ABSTRACT

Tamarindus indica L., the sole species in the genus Tamarind, which is a member of the subfamily Caesalpiniaceae in the family Leguminosae (Fabaceae), is extensively dispersed in many tropical and subtropical regions. This plant's Arabic name, Tamr Al-Hindi, is the basis for its English name, Tamarind. In traditional medicine, this genus has played a major role since the time of the ancient Egyptians. Folkloric medicine has traditionally used Tamarind to treat a variety of conditions, including diabetes mellitus, fever, malaria, ulcers, diarrhoea, dysentery and wounds. The primary bioactive components of this species, which have a variety of biological functions, have been identified as flavonoids, phenolic contents, sterols, triterpenes, fatty acids, sugars and other substances. Genus Tamarind has been shown to have anti-inflammatory, analgesic, anti-pyretic, antibacterial, hypolipidemic, anti-diabetic, hepatoprotective, anti-ulcerogenic and antioxidant properties. This article provides an overview of the identified chemicals from T. indica together with their stated biological activities.

11.
PhytoKeys ; 238: 199-230, 2024.
Article in English | MEDLINE | ID: mdl-38435132

ABSTRACT

A few species names in Cytisussect.Tubocytisus are re-assessed and taxonomically evaluated. Diagnostic characters are discussed and the species status of C.absinthioides Janka, C.eriocarpus Boiss., C.frivaldszkyanus Degen, C.jankae Velen. and C.smyrnaeus Boiss. is confirmed. The holotype of Cytisustriflorus Lam. was found to belong to C.hirsutus L. rather than to the C.ratisbonensis group as currently treated. Cytisuslasiosemius Boiss. is not the correct name for C.frivaldszkyanus Degen, but another synonym of C.hirsutus. Cytisuslitwinowii V.I.Krecz., which was known solely from the holotype, is a synonym of C.austriacus L. s.str. Chamaecytisuspseudojankae Pifkó & Barina, reported from a small area shared between Albania, Greece and North Macedonia, is treated as a subalpine variant of C.austriacus. Cytisustmoleus Boiss. is removed from the synonymy of C.eriocarpus and added to the synonymy of C.pygmaeus Willd. Cytisusfalcatussubsp.albanicus Degen & Dörfl. and C.pubescens Gilib. are synonymised with C.hirsutus. Cytisusmicrophyllus Boiss. is moved from C.austriacus s.l. to the synonymy of C.frivaldszkyanus, and C.pindicola (Degen) Halácsy to the synonymy of C.jankae. Chamaecytisuscalcareus (Velen.) Kuzmanov is accepted as Cytisuscalcareus (Velen.) Sennikov & Val.N.Tikhom., comb. nov., and its distribution is circumscribed. Cytisushirsutusvar.ciliatus (Wahlenb.) Hazsl. and C.polytrichusvar.subglabratus Val.N.Tikhom. & Sennikov, var. nov. are recognised as glabrous variants of the corresponding species. Lectotypes of C.ciliatus, C.hirsutissimus K.Koch, C.jankae, C.lasiosemius, C.pubescens, C.rhodopeus J.Wagner ex Bornm. and C.thirkeanus K.Koch are designated. Cytisuspolytrichus is reported from the Western Caucasus in place of C.wulffii auct.

12.
PhytoKeys ; 238: 157-197, 2024.
Article in English | MEDLINE | ID: mdl-38435133

ABSTRACT

A group of species of Cytisussect.Tubocytisus with strictly lateral inflorescences, commonly referred to as C.ratisbonensis s.l., is critically revised in Eastern Europe on the basis of morphology and comprehensive treatment of herbarium specimens and observations. Seven species and two presumed hybrids are recognised. Complete accounts are provided for each species, with synonyms, typifications, brief morphological descriptions, data on ecology and distributions, taxonomic and nomenclatural annotations. Cytisuspolonicus is described as new to science, separated from C.ratisbonensis on the basis of morphology and diploid (vs. tetraploid) chromosome count. The lectotype of C.elongatus is superseded and a new lectotype is designated; this name has priority for the species previously known as C.triflorus. Six species names are newly placed to the synonymy: Chamaecytisuspineticola under Cytisusruthenicus s. str., and Cytisusczerniaevii, C.leucotrichus, C.lindemannii, C.ponomarjovii and Chamaecytisuskorabensis under Cytisuselongatus. The presumed hybrid between C.ruthenicus and C.elongatus, which was incorrectly known as C.czerniaevii, is described here as C.semerenkoanus. Cytisuslithuanicus, which has been an obscure name since its original publication, is resurrected for a newly-recognised octoploid species, which is endemic to eastern Poland, western Belarus and north-western Ukraine. The name C.cinereus is re-instated for the species previously known as C.paczoskii, and C.horniflorus is added to its synonymy; its complete distribution area is circumscribed, and its occurrence in Austria, Poland, Romania, Serbia and Slovakia is documented. Cytisuskreczetoviczii and C.elongatus are reported for the first time from Belarus, and the latter species also from Bosnia and Herzegovina, Montenegro and Slovenia. Cytisusborysthenicus and C.elongatus are reported as new to some territories in European Russia. Cytisusratisbonensis s. str. is treated as absent from Eastern Europe. The neglected protologue of C.ruthenicus is discovered, and the nomenclature of all other names is verified and corrected when necessary. The original material of C.borysthenicus is re-discovered. Five further lectotypes and one neotype are designated. Distribution areas are circumscribed on the basis of numerous herbarium collections and documented observations, identified or verified by the authors. Chromosome counts published for nameless taxa from Belarus, Ukraine and Russia are assigned to the species according to their herbarium vouchers: C.borysthenicus, C.kreczetoviczii and C.lithuanicus are octoploid (2n = 100), C.ruthenicus is tetraploid (2n = 50) and octoploid (2n = 100), and C.semerenkoanus and C.elongatus are tetraploid (2n = 50).

13.
J Asian Nat Prod Res ; : 1-6, 2024 Mar 01.
Article in English | MEDLINE | ID: mdl-38426506

ABSTRACT

Two new cassane diterpenoids, sucupiranin MN (1) and sucupiranin ML (2), together with two known compounds sucutinirane C (3) and deacetylsucutinirane C (4) were isolated from the seed kernels of Caesalpinia sinensis. Their structures were elucidated by means of analysis of comprehensive spectroscopic data, especially HRESIMS and 1D/2D NMR spectroscopy. Compounds 1-4 are typical furan-type cassane derivatives with an aromatized C ring. Biological evaluation revealed that compounds 1-4 at the concentration of 10 µM could inhibit the overproduction of NO in LPS-stimulated RAW 264.7 macrophages.

14.
Carbohydr Res ; 537: 109074, 2024 Mar.
Article in English | MEDLINE | ID: mdl-38452719

ABSTRACT

Two new glycosides, sindosides A-B (1-2), along with 11 previously identified metabolites (3-13), were isolated from an ethanolic extract of the leaves of Sindora siamensis var. maritima. The structures of the purified phytochemicals were elucidated by interpreting their spectroscopic data (IR, NMR, and HRMS). The absolute configuration of compound 1 was established by experimental and calculated ECD spectra. The antimicrobial results revealed that compound 8 selectively inhibited C. albicans fungal with a MIC value of 64 µg/mL, whereas 11 presented a weak inhibition toward E. faecalis, S. aureus, and B. cereus bacterial strains with the same MIC value of 128 µg/mL. Interestingly, compounds 1, 2, 8, 9, and 11 showed α-glucosidase inhibitory activity with IC50 values ranging from 14.42 ± 0.21 to 30.62 ± 0.18 µM, which were more active than the positive control (acarbose, with an IC50 value of 46.78 ± 1.37 µM). Enzyme kinetic analysis revealed that compounds 1, 2, and 11 behaved as uncompetitive inhibitors with Ki values of 8.60 ± 1.04, 5.16 ± 0.73, and 7.17 ± 0.98 µM, respectively.


Subject(s)
Anti-Infective Agents , alpha-Glucosidases , alpha-Glucosidases/metabolism , Kinetics , Staphylococcus aureus , Anti-Infective Agents/pharmacology , Plant Extracts/chemistry , Glycoside Hydrolase Inhibitors/pharmacology , Glycoside Hydrolase Inhibitors/chemistry
15.
Phytochemistry ; 221: 114064, 2024 May.
Article in English | MEDLINE | ID: mdl-38508326

ABSTRACT

Abri Herba (AH, known as 'Ji-Gu-Cao' in China) has a long-term medicinal history of treating cholecystitis, acute and chronic hepatitis and non-alcoholic fatty liver (NAFL) in China or other Asian countries. This review aimed to provide a comprehensive analysis of AH in terms of ethnopharmacology, phytochemistry, pharmacology, pharmacokinetics and toxicology. The information involved in the study was collected from a variety of electronic resources, and >100 scientific studies have been used since 1962. Until now, 95 chemical compounds have been isolated and identified from AH and the seeds of Abrus cantoniensis Hance (ACH), including 47 terpenoids, 26 flavonoids and 4 alkaloids. The pharmacological activities of AH extracts and their pure compounds have been explored in the aspects of anti-hyperlipidaemia, hepatoprotection, anti-tumour, anti-viral, anti-bacterial, anti-inflammatory and analgesic, immunomodulation, antioxidant and others. The pharmacokinetics and excretion kinetics of AH in vivo and 15 traditional and clinical prescriptions containing AH have been sorted out, and the potential therapeutic mechanism and drug metabolism pattern were also summarised. The pods of ACH are toxic, with a median lethal dose (LD50) of 10.01 ± 2.90 g/kg (i.g.) in mice. Interestingly, the toxicity of ACH's pods and seeds decreased after boiling. However, the toxicity mechanism of pods of ACH is unclear, limiting its clinical application. Clinical trials in the future should be used to explore its safety. Meanwhile, as one of the relevant pharmacological activities, the effects and mechanism of AH on anti-hyperlipidaemia and hepatoprotection should be further studied, which is of great significance for understanding its mechanism of action in the treatment of NAFL disease and improving its clinical application.


Subject(s)
Alkaloids , Plant Extracts , Animals , Mice , Ethnopharmacology , Plant Extracts/chemistry , Medicine, Chinese Traditional , Anti-Inflammatory Agents , Phytochemicals
16.
Plants (Basel) ; 13(3)2024 Jan 30.
Article in English | MEDLINE | ID: mdl-38337936

ABSTRACT

A synoptic compendium of the legumes of the Mimosoideae clade in northeastern Mexico is presented for the first time, including changes in their botanical nomenclature and retypification of genera. Furthermore, based on new information recently published, the taxonomic limits of several new genera segregated from Acacia (Acaciella, Mariosousa, Senegalia, and Vachellia) and Prosopis (Neltuma and Strombocarpa) are clarified and included. Based on field work, collection of botanical samples over the past 30 years, and reviewing botanical materials in national and international herbaria, we have completed the diversity of legumes of the Mimosoideae clade of northeastern Mexico. Three tribes (Acacieae, Ingeae, and Mimosaeae), 22 genera, 92 species, and 19 infraspecific categories were recorded. Only the genus Painteria is endemic to Mexico. Eighty-eight species are native to Mexico, and four are exotic: Acacia salicina, Neptunia prostrata, Neltuma chilensis and Albizia lebbeck. Twenty-eight species are endemic to Mexico, nine species are endemic to northeastern Mexico, and four species are endemic to only one state in Mexico. The 22 registered genera represent 44% and 65% of the generic flora of the Mimosoideae clade for Mexico and the planet, respectively, while the 92 species registered represent 3% and 18% of the species of the clade Mimosoideae for the planet and Mexico, respectively. According to the new nomenclature of legumes, the number of genera in the Mimosoideae clade in northern Mexico has increased from 19 to 24.

17.
Genes (Basel) ; 15(1)2024 01 11.
Article in English | MEDLINE | ID: mdl-38254977

ABSTRACT

The classification and phylogenetic relationships within the Phaseoleae tribe (Leguminosae) have consistently posed challenges to botanists. This study addresses these taxonomic intricacies, with a specific focus on the Glycininae subtribe, by conducting a comprehensive analysis of the highly conserved plastome in Amphicarpaea edgeworthii Benth., a critical species within this subtribe. Through meticulous genomic sequencing, we identified a plastome size of 148,650 bp, composed of 128 genes, including 84 protein-coding genes, 36 tRNA genes, and 8 rRNA genes. Comparative genomic analysis across seven Glycininae species illuminated a universally conserved circular and quadripartite structure, with nine genes exhibiting notable nucleotide diversity, signifying a remarkable genomic variability. Phylogenetic reconstruction of 35 Phaseoleae species underscores the affinity of Amphicarpaea with Glycine, placing Apios as a sister lineage to all other Phaseoleae species, excluding Clitorinae and Diocleinae subtribes. Intriguingly, Apios, Butea, Erythrina, and Spatholobus, traditionally clumped together in the Erythrininae subtribe, display paraphyletic divergence, thereby contesting their taxonomic coherence. The pronounced structural differences in the quadripartite boundary genes among taxa with unresolved subtribal affiliations demand a reevaluation of Erythrininae's taxonomic classification, potentially refining the phylogenetic contours of the tribe.


Subject(s)
Fabaceae , Swine , Animals , Fabaceae/genetics , Phylogeny , Arachis , Genomics , China
18.
J Biol Chem ; 300(3): 105647, 2024 Mar.
Article in English | MEDLINE | ID: mdl-38219818

ABSTRACT

Pea phytoalexins (-)-maackiain and (+)-pisatin have opposite C6a/C11a configurations, but biosynthetically how this occurs is unknown. Pea dirigent-protein (DP) PsPTS2 generates 7,2'-dihydroxy-4',5'-methylenedioxyisoflav-3-ene (DMDIF), and stereoselectivity toward four possible 7,2'-dihydroxy-4',5'-methylenedioxyisoflavan-4-ol (DMDI) stereoisomers was investigated. Stereoisomer configurations were determined using NMR spectroscopy, electronic circular dichroism, and molecular orbital analyses. PsPTS2 efficiently converted cis-(3R,4R)-DMDI into DMDIF 20-fold faster than the trans-(3R,4S)-isomer. The 4R-configured substrate's near ß-axial OH orientation significantly enhanced its leaving group abilities in generating A-ring mono-quinone methide (QM), whereas 4S-isomer's α-equatorial-OH was a poorer leaving group. Docking simulations indicated that the 4R-configured ß-axial OH was closest to Asp51, whereas 4S-isomer's α-equatorial OH was further away. Neither cis-(3S,4S)- nor trans-(3S,4R)-DMDIs were substrates, even with the former having C3/C4 stereochemistry as in (+)-pisatin. PsPTS2 used cis-(3R,4R)-7,2'-dihydroxy-4'-methoxyisoflavan-4-ol [cis-(3R,4R)-DMI] and C3/C4 stereoisomers to give 2',7-dihydroxy-4'-methoxyisoflav-3-ene (DMIF). DP homologs may exist in licorice (Glycyrrhiza pallidiflora) and tree legume Bolusanthus speciosus, as DMIF occurs in both species. PsPTS1 utilized cis-(3R,4R)-DMDI to give (-)-maackiain 2200-fold more efficiently than with cis-(3R,4R)-DMI to give (-)-medicarpin. PsPTS1 also slowly converted trans-(3S,4R)-DMDI into (+)-maackiain, reflecting the better 4R configured OH leaving group. PsPTS2 and PsPTS1 provisionally provide the means to enable differing C6a and C11a configurations in (+)-pisatin and (-)-maackiain, via identical DP-engendered mono-QM bound intermediate generation, which PsPTS2 either re-aromatizes to give DMDIF or PsPTS1 intramolecularly cyclizes to afford (-)-maackiain. Substrate docking simulations using PsPTS2 and PsPTS1 indicate cis-(3R,4R)-DMDI binds in the anti-configuration in PsPTS2 to afford DMDIF, and the syn-configuration in PsPTS1 to give maackiain.


Subject(s)
Pisum sativum , Plant Proteins , Pterocarpans , Pisum sativum/chemistry , Pisum sativum/metabolism , Pterocarpans/chemistry , Pterocarpans/metabolism , Stereoisomerism , Plant Proteins/chemistry , Plant Proteins/metabolism , Models, Molecular , Molecular Conformation
19.
Fundam Clin Pharmacol ; 38(2): 208-224, 2024 Apr.
Article in English | MEDLINE | ID: mdl-37700611

ABSTRACT

BACKGROUND: Astragaloside IV has emerged as a pharmaceutical monomer with great medical applications and potential. Astragaloside IV has many effects such as improving myocardial ischemia, cerebral ischemia-reperfusion injury, anti-inflammatory, analgesic, antiviral, promoting lymphocyte proliferation, and antitumor effects. However, there are few bibliometric studies on astragaloside IV. OBJECTIVES: We aim to visualize the hotspots and trends in astragaloside IV research through bibliometric analysis to further understand the future development of basic and clinical research. Methods The articles and reviews on astragaloside IV were screened from the Web of Science Core Collection, and knowledge maps were generated using CiteSpace software. Bibliometric analysis was performed on 971 articles published from 1998 to 2022. RESULTS: The number of articles on astragaloside IV increased yearly. These publications came from 42 countries/regions, with China being the largest. The primary research institutions were Shanghai University of Traditional Chinese Medicine and Guangzhou University of Traditional Chinese Medicine. Journal of Ethnopharmacology was the most studied journal and co-cited journal. A total of 473 authors were included, among which Hongxin Wang had the highest number of publications and Zhang Wd had the highest total citation frequency. After analysis, the most common keywords are astragaloside IV, expression, and oxidative stress. Cardiovascular disease, cerebral ischemia, cancer, and kidney disease are current and developing research fields. CONCLUSION: This study used bibliometrics and visualization methods to analyze the research hotspots and trends of astragaloside IV. Astragaloside IV on ischemia-reperfusion injury, cancer, and tumor may become the focus of future research.


Subject(s)
Neoplasms , Reperfusion Injury , Saponins , Triterpenes , Humans , China , Bibliometrics , Reperfusion Injury/drug therapy
20.
Phytochemistry ; 217: 113925, 2024 Jan.
Article in English | MEDLINE | ID: mdl-37977253

ABSTRACT

Three undescribed hybrid flavan-chalcones, caesalpinflavans D-F, and an unreported normonoterpene-chalcone heterodimer, caesalpinnone B, along with three known biflavonoids were isolated from the twigs and leaves of Caesalpinia digyna. Their structures were elucidated based on extensive spectroscopic analysis and quantum chemical calculations. Caesalpinflavan F was identified as a bis-(hybrid flavan-chalcone), its natural occurrence was supported by HPLC-IT-TOF-MS analysis. The condensation of caesalpinflavan B with acetone was possibly a key step in the biosynthesis of caesalpinflavan F. Caesalpinnone B represents an unprecedented meroterpenoid featuring a cyclobutane central framework, which was derived from chalcone and normonoterpenoid via a key [2 + 2] cyclization reaction. Biological evaluation revealed that compounds caesalpinflavan D, oxytrodiflavanone A, and caesalpinnone B exhibited moderate cytotoxicity against HL-60, SMMC-7721, SW480, A-549 and/or MDA-MB-231 cell lines with IC50 values ranging from 8.051 ± 0.673 to 24.26 ± 0.61 µM. This study provided evidence for further research and possible utilization of C. digyna in the future.


Subject(s)
Caesalpinia , Chalcone , Chalcones , Chalcones/pharmacology , Chalcones/chemistry , Caesalpinia/chemistry , Molecular Structure
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