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1.
ACS Appl Mater Interfaces ; 16(23): 30567-30579, 2024 Jun 12.
Article in English | MEDLINE | ID: mdl-38830119

ABSTRACT

Cementation in construction materials primarily relies on the aqueous precipitation of minerals such as carbonates and silicates. The kinetics of nucleation and growth play a critical role in the development of strength and durability, yet our understanding of the kinetic controls governing phase formation and porosity reduction in cements remains limited. In this study, we synthesized bisphosphonate molecules with varying alkyl chain lengths and functional groups to investigate their impact on calcium carbonate precipitation. Through conductivity measurements, infrared spectroscopy, and thermogravimetric analysis, we uncovered the selective formation of polymorphs and the specific incorporation of these molecules within the carbonate matrix. Further, in situ atomic force microscopy revealed that these molecules influenced the morphology of the precipitates, indicating a possible effect on the ionic organization through sorption mechanisms. Interestingly, amorphous calcium carbonate (ACC), when formed in the presence of bisphosphonates, showed metastability for at least seven months without inhibiting further calcium carbonate precipitation. Our research sheds light on the diverse mechanisms by which organic additives can modify mineral nucleation and growth, offering valuable insights for the control and enhancement of carbonate-based cementation processes.

2.
Small Methods ; : e2400395, 2024 May 16.
Article in English | MEDLINE | ID: mdl-38754074

ABSTRACT

Ferroelectric hafnium zirconium oxide (HZO) holds promise for nextgeneration memory and transistors due to its superior scalability and seamless integration with complementary metal-oxide-semiconductor processing. A major challenge in developing this emerging ferroelectric material is the metastable nature of the non-centrosymmetric polar phase responsible for ferroelectricity, resulting in a coexistence of both polar and non-polar phases with uneven grain sizes and random orientations. Due to the structural similarity between the multiple phases and the nanoscale dimensions of the thin film devices, accurate measurement of phase-specific information remains challenging. Here, the application of 4D scanning transmission electron microscopy is demonstrated with automated electron diffraction pattern indexing to analyze multiphase polycrystalline HZO thin films, enabling the characterization of crystallographic phase and orientation across large working areas on the order of hundreds of nanometers. This approach offers a powerful characterization framework to produce a quantitative and statistically robust analysis of the intricate structure of HZO films by uncovering phase composition, polarization axis alignment, and unique phase distribution within the HZO film. This study introduces a novel approach for analyzing ferroelectric HZO, facilitating reliable characterization of process-structure-property relationships imperative to accelerating the growth optimization, performance, and successful implementation of ferroelectric HZO in devices.

3.
bioRxiv ; 2024 Mar 31.
Article in English | MEDLINE | ID: mdl-38585882

ABSTRACT

INTRODUCTION: Alzheimer's disease (AD) affects brain structure and function along its evolution, but brain network dynamic changes remain largely unknown. METHODS: To understand how AD shapes brain activity, we investigated the spatiotemporal dynamics and resting state functional networks using the intrinsic ignition framework, which characterizes how an area transmits neuronal activity to others, resulting in different degrees of integration. Healthy participants, MCI, and AD patients were scanned using resting state fMRI. Mixed effects models were used to assess the impact of ABeta and tau, at the regional and whole-brain levels. RESULTS: Dynamic complexity is progressively reduced, with Healthy participants showing higher metastability (i.e., a more complex dynamical regime over time) than observed in the other stages, while AD subjects showed the lowest. DISCUSSION: Our study provides further insight into how AD modulates brain network dynamics along its evolution, progressively disrupting the whole-brain and resting state network dynamics.

4.
Front Neurorobot ; 18: 1336438, 2024.
Article in English | MEDLINE | ID: mdl-38440318

ABSTRACT

Several studies have shown that coordination among neural ensembles is a key to understand human cognition. A well charted path is to identify coordination states associated with cognitive functions from spectral changes in the oscillations of EEG or MEG. A growing number of studies suggest that the tendency to switch between coordination states, sculpts the dynamic repertoire of the brain and can be indexed by a measure known as metastability. In this article, we characterize perturbations in the metastability of global brain network dynamics following Transcranial Magnetic Stimulation that could quantify the duration for which information processing is altered. Thus allowing researchers to understand the network effects of brain stimulation, standardize stimulation protocols and design experimental tasks. We demonstrate the effect empirically using publicly available datasets and use a digital twin (a whole brain connectome model) to understand the dynamic principles that generate such observations. We observed a significant reduction in metastability, concurrent with an increase in coherence following single-pulse TMS reflecting the existence of a window where neural coordination is altered. The reduction in complexity was validated by an additional measure based on the Lempel-Ziv complexity of microstate labeled EEG data. Interestingly, higher frequencies in the EEG signal showed faster recovery in metastability than lower frequencies. The digital twin shed light on how the phase resetting introduced by the single-pulse TMS in local cortical networks can propagate globally, giving rise to changes in metastability and coherence.

5.
Front Netw Physiol ; 4: 1302499, 2024.
Article in English | MEDLINE | ID: mdl-38516614

ABSTRACT

Transient synchronization of bursting activity in neuronal networks, which occurs in patterns of metastable itinerant phase relationships between neurons, is a notable feature of network dynamics observed in vivo. However, the mechanisms that contribute to this dynamical complexity in neuronal circuits are not well understood. Local circuits in cortical regions consist of populations of neurons with diverse intrinsic oscillatory features. In this study, we numerically show that the phenomenon of transient synchronization, also referred to as metastability, can emerge in an inhibitory neuronal population when the neurons' intrinsic fast-spiking dynamics are appropriately modulated by slower inputs from an excitatory neuronal population. Using a compact model of a mesoscopic-scale network consisting of excitatory pyramidal and inhibitory fast-spiking neurons, our work demonstrates a relationship between the frequency of pyramidal population oscillations and the features of emergent metastability in the inhibitory population. In addition, we introduce a method to characterize collective transitions in metastable networks. Finally, we discuss potential applications of this study in mechanistically understanding cortical network dynamics.

6.
J Biochem ; 175(6): 575-585, 2024 May 31.
Article in English | MEDLINE | ID: mdl-38430131

ABSTRACT

Amyloidosis is characterized by the abnormal accumulation of amyloid proteins. The causative proteins aggregate from monomers to oligomers and fibrils, among which some intermediate oligomers are considered as major toxins. Cytotoxic oligomers are generated not only by aggregation but also via fibril disaggregation. However, little is known about the structural characteristics and generation conditions of cytotoxic oligomers produced during disaggregation. Herein, we summarized the structural commonalities of cytotoxic oligomers formed under various disaggregation conditions, including the addition of heat shock proteins or small compounds. In vitro experimental data demonstrated the presence of high-molecular-weight oligomers (protofibrils or protofilaments) that exhibited a fibrous morphology and ß-sheet structure. Molecular dynamics simulations indicated that the distorted ß-sheet structure contributed to their metastability. The tendency of these cytotoxic oligomers to appear under mild disaggregation conditions, implied formation during the early stages of disaggregation. This review will aid researchers in exploring the characteristics of highly cytotoxic oligomers and developing drugs that target amyloid aggregates.


Subject(s)
Amyloid , Humans , Amyloid/chemistry , Amyloid/metabolism , Molecular Dynamics Simulation , Protein Aggregates , Amyloidosis/metabolism , Amyloidosis/pathology , Protein Aggregation, Pathological/metabolism
7.
Bull Math Biol ; 86(3): 28, 2024 02 11.
Article in English | MEDLINE | ID: mdl-38341397

ABSTRACT

Aggregations are emergent features common to many biological systems. Mathematical models to understand their emergence are consequently widespread, with the aggregation-diffusion equation being a prime example. Here we study the aggregation-diffusion equation with linear diffusion in one spatial dimension. This equation is known to support solutions that involve both single and multiple aggregations. However, numerical evidence suggests that the latter, which we term 'multi-peaked solutions' may often be long-transient solutions rather than asymptotic steady states. We develop a novel technique for distinguishing between long transients and asymptotic steady states via an energy minimisation approach. The technique involves first approximating our study equation using a limiting process and a moment closure procedure. We then analyse local minimum energy states of this approximate system, hypothesising that these will correspond to asymptotic patterns in the aggregation-diffusion equation. Finally, we verify our hypotheses through numerical investigation, showing that our approximate analytic technique gives good predictions as to whether a state is asymptotic or transient. Overall, we find that almost all twin-peaked, and by extension multi-peaked, solutions are transient, except for some very special cases. We demonstrate numerically that these transients can be arbitrarily long-lived, depending on the parameters of the system.


Subject(s)
Mathematical Concepts , Models, Biological , Diffusion
8.
Appl Radiat Isot ; 206: 111255, 2024 Apr.
Article in English | MEDLINE | ID: mdl-38422943

ABSTRACT

Externally-induced modification activated by high-energy excitation such as γ-irradiation from 60Co source is analyzed in chalcogenide glasses in terms of radiation-structural and glass-relaxation metastability, at the example of sulphides (including stoichiometric arsenic trisulphide, As2S3) and selenides. Unified configuration-enthalpy model evolving conjugated configuration-coordinate (free energy in dependence on configuration coordinate) and thermodynamic enthalpy (temperature deviations in enthalpy, configurational entropy or free volume) diagrams is proposed to describe metastability in these glasses under external influences, such as (1) physical ageing, (2) irradiation, (3) thermal annealing, (4) rejuvenation, and their combinations. The model predicts glass stabilization in the ground state composed of partial sub-states related to (i) irradiation, (ii) rejuvenation, (iii) annealing, as well as (iv) ideal-glass deep states, connected by over-barrier jumping and through-barrier tunneling transitions. This model allows an adequate parameterization of optical responses related to metastability in these glasses defined through blue (bleaching) or red (darkening) shift in their optical transmission spectra.

9.
Biomimetics (Basel) ; 9(2)2024 Feb 09.
Article in English | MEDLINE | ID: mdl-38392147

ABSTRACT

The human brain is arguably the most complex "machine" to ever exist. Its detailed functioning is yet to be fully understood, let alone modelled. Neurological processes have logical signal-processing and biophysical aspects, and both affect the brain's structure, functioning and adaptation. Mathematical approaches based on both information and graph theory have been extensively used in an attempt to approximate its biological functioning, along with Artificial Intelligence frameworks inspired by its logical functioning. In this article, an approach to model some aspects of the brain learning and signal processing is presented, mimicking the metastability and backpropagation found in the real brain while also accounting for neuroplasticity. Several simulations are carried out with this model to demonstrate how dynamic neuroplasticity, neural inhibition and neuron migration can reshape the brain's logical connectivity to synchronise signal processing and obtain certain target latencies. This work showcases the importance of dynamic logical and biophysical remodelling in brain plasticity. Combining mathematical (agents, graph theory, topology and backpropagation) and biomedical ingredients (metastability, neuroplasticity and migration), these preliminary results prove complex brain phenomena can be reproduced-under pertinent simplifications-via affordable computations, which can be construed as a starting point for more ambitiously accurate simulations.

10.
Macromol Rapid Commun ; 45(9): e2300704, 2024 May.
Article in English | MEDLINE | ID: mdl-38346444

ABSTRACT

The isothermal melting behaviors of ultra-high molecular weight polyethylene (UHMWPE) with different entangled states (i.e., nascent and melt-crystallized samples) are studied. For two kinds of UHMWPE samples, the result shows that the relative content of survived crystals (Xs) exponentially decreases with time and reaches a constant value. It is suggested that such a melting behavior is related to the observed nonlinear growth of crystals induced by the kinetically rejected entanglements accumulated at the growth front. Additionally, the exponential decay of Xs with time provides a characteristic melting time (τ) for the melting process. Compared to the melt-crystallized UHMWPE, the τ value of nascent UHMWPE is generally longer even in a higher temperature range, which is mainly because the former has a larger entanglement density difference. Furthermore, these observations demonstrate that UHMWPEs with different entangled states have an analogous melting mechanism since they exhibit a similar melting activation energy (≈1300 kJ mol-1).


Subject(s)
Crystallization , Polyethylenes , Kinetics , Polyethylenes/chemistry , Transition Temperature , Temperature
11.
Nano Lett ; 24(6): 1967-1973, 2024 Feb 14.
Article in English | MEDLINE | ID: mdl-38289648

ABSTRACT

Interfaces play a critical thermodynamic role in the existence of multilayer systems. Due to their utility in bridging energetic and compositional differences between distinct species, the formation of interfaces inherently creates internal strain in the bulk due to the reorganization needed to accommodate such a change. We report the effect of scaling interfacial stress by deposition of different adlayers on a host thin metal film. Intrinsic property differences between host and deposited metal atoms result in varying degree of composition and energy gradient within the interface. Interfacial stress can increase defects in the host leading to (i) energy dissipation and reorganization to minimize surface energy, and (ii) increased material strength. We infer that dissipation of interfacial stress induces defect migration, hence bulk and surface atomic reconstruction as captured by the surface roughness and grain size reduction coupled with a concomitant increase in material strength.

12.
Adv Mater ; 36(8): e2309865, 2024 Feb.
Article in English | MEDLINE | ID: mdl-38042991

ABSTRACT

Laser processing in metals is versatile yet limited by its reliance on phase transformation through heating rather than electronic excitation due to their low absorptivity, attributing from highly ordered structures. Metastable states (i.e., surfaces, glasses, undercooled liquids), however, present a unique platform, both energetically and structurally to enable energy landscape tuning through selective stimuli. Herein, this ansatz is demonstrated by exploiting thin passivating oxides to stabilize an undercooled state, followed by photo-perturbation of the near surface order to induce convective Marangoni flows, edge-coalescence and phase transition into a larger metastable solid bearing asymmetric composition between the near surface and core of the formed structure. The self-terminating nature of the process creates a perfectly contained system which can maintain a high relaxation energy barrier hence deep metastable states for extended periods of time.

13.
Brain Connect ; 2024 Mar 08.
Article in English | MEDLINE | ID: mdl-37917103

ABSTRACT

Background: In this study, we analyze metastability, a feature of brain dynamics in subjects experiencing mild cognitive impairment Alzheimer's disease (MCI-AD) under eyes open (EO) and eyes closed (EC) conditions. Alzheimer's disease (AD) is a critically prolonged brain disorder that interrupts neural synchronization and desynchronization. Thus, studying metastability under EO and EC conditions would help in understanding the cortical dynamics and its impact in early-stage AD. Methods: Metastability is investigated using three methods namely frequency variance analysis, Kuramoto order parameter, and through meta-state activation patterns. Frequency variance estimated from 21 electroencephalogram (EEG) channels was clustered into three regions namely anterior, central, and posterior to study the regional metastability analysis. Global metastability was assessed from Kuramoto order parameter and meta-state activation patterns by collating the 21 EEG channels. Results: Reduction in metastability was observed in central regions of MCI-AD subjects through the study of frequency variance analysis. There was a marked reduction in global metastability in the patient group under the resting EO condition. Reduction in meta-state activation properties such as temporal activation sequence complexity, modularity, and leap size in MCI-AD condition under the EO condition indicates an overall reduction in brain flexibility. Conclusion: Taken together, the study infers an underlying structural change in neuronal dynamics influencing the reduction of metastability under the MCI-AD condition. The study further revealed that this reduction in metastability is more pronounced in the EO condition.

14.
Neurosci Biobehav Rev ; 155: 105459, 2023 Dec.
Article in English | MEDLINE | ID: mdl-37956880

ABSTRACT

Bettinger, J. S., K. J. Friston. Conceptual Foundations of Physiological Regulation incorporating the Free Energy Principle & Self-Organized Criticality. NEUROSCI BIOBEHAV REV 23(x) 144-XXX, 2022. Since the late nineteen-nineties, the concept of homeostasis has been contextualized within a broader class of "allostatic" dynamics characterized by a wider-berth of causal factors including social, psychological and environmental entailments; the fundamental nature of integrated brain-body dynamics; plus the role of anticipatory, top-down constraints supplied by intrinsic regulatory models. Many of these evidentiary factors are integral in original descriptions of homeostasis; subsequently integrated; and/or cite more-general operating principles of self-organization. As a result, the concept of allostasis may be generalized to a larger category of variational systems in biology, engineering and physics in terms of advances in complex systems, statistical mechanics and dynamics involving heterogenous (hierarchical/heterarchical, modular) systems like brain-networks and the internal milieu. This paper offers a three-part treatment. 1) interpret "allostasis" to emphasize a variational and relational foundation of physiological stability; 2) adapt the role of allostasis as "stability through change" to include a "return to stability" and 3) reframe the model of homeostasis with a conceptual model of criticality that licenses the upgrade to variational dynamics.


Subject(s)
Allostasis , Humans , Allostasis/physiology , Adaptation, Physiological/physiology , Models, Theoretical , Brain/physiology
15.
Pharmaceutics ; 15(11)2023 Nov 02.
Article in English | MEDLINE | ID: mdl-38004553

ABSTRACT

The widespread application of calcium carbonate is determined by its high availability in nature and simplicity of synthesis in laboratory conditions. Moreover, calcium carbonate possesses highly attractive physicochemical properties that make it suitable for a wide range of biomedical applications. This review provides a conclusive analysis of the results on using the tunable vaterite metastability in the development of biodegradable drug delivery systems and therapeutic vehicles with a controlled and sustained release of the incorporated cargo. This manuscript highlights the nuances of vaterite recrystallization to non-porous calcite, dissolution at acidic pH, biodegradation at in vivo conditions and control over these processes. This review outlines the main benefits of vaterite instability for the controlled liberation of the encapsulated molecules for the development of biodegradable natural and synthetic polymeric materials for biomedical purposes.

16.
J Phys Condens Matter ; 36(13)2023 Dec 20.
Article in English | MEDLINE | ID: mdl-38035386

ABSTRACT

Metastability of Aln/12Ga1-n/12N (n= 2-10: integer) with the 1-2 monolayer (ML) in-plane configuration towards thec[0001] direction has been demonstrated recently. To theoretically explain the existence of these metastable structures, relatively large calculation cells are needed. However, previous calculations were limited to the use of small calculation cell sizes to estimate the local potential depth (Δσ) of ordered Al1/2Ga1/2N models. In this work, we were able to evaluate large calculation cells based on the interaction energies between proximate Al atoms (δEAl-Al) in AlGaN alloys. To do this,δEAl-Alvalues were estimated by first-principles calculations (FPCs) using a (5a1× 5a2× 5c) cell. Next, a survey of the possible ordered configurations using various large calculation cell models was performed using the estimatedδEAl-Alvalues and the Monte-Carlo method. Then, various Δσvalues were estimated by FPCs and compared with the configurations previously reported by other research groups. We found that the ordered configuration obtained from the (4a1× 2a2× 1c) calculation cell (C42) has the lowest Δσof -9.3 meV/cation and exhibited an in-plane configuration at thec(0001) plane having (-Al-Al-Ga-Ga-) and (-Al-Ga-) sequence arrangements observed along them11-00planes. Hence, we found consistencies between the morphology obtained from experiment and the shape of the primitive cell based on our numerical calculations.

17.
Adv Mater ; 35(51): e2306396, 2023 Dec.
Article in English | MEDLINE | ID: mdl-37906379

ABSTRACT

Cation-disordered rock salts (DRXs) are well known for their potential to realize the goal of achieving scalable Ni- and Co-free high-energy-density Li-ion batteries. Unlike in most cathode materials, the disordered cation distribution may lead to more factors that control the electrochemistry of DRXs. An important variable that is not emphasized by research community is regarding whether a DRX exists in a more thermodynamically stable form or a more metastable form. Moreover, within the scope of metastable DRXs, over-stoichiometric DRXs, which allow relaxation of the site balance constraint of a rock salt structure, are particularly underexplored. In this work, these findings are reported in locating a generally applicable approach to "metastabilize" thermodynamically stable Mn-based DRXs to metastable ones by introducing Li over-stoichiometry. The over-stoichiometric metastabilization greatly stimulates more redox activities, enables better reversibility of Li deintercalation/intercalation, and changes the energy storage mechanism. The metastabilized DRXs can be transformed back to the thermodynamically stable form, which also reverts the electrochemical properties, further contrasting the two categories of DRXs. This work enriches the structural and compositional space of DRX families and adds new pathways for rationally tuning the properties of DRX cathodes.

18.
Bioinspir Biomim ; 18(6)2023 09 25.
Article in English | MEDLINE | ID: mdl-37659405

ABSTRACT

In this manuscript, we present a novel method for estimating the stochastic stability characteristics of metastable legged systems using the unscented transformation. Prior methods for stability analysis in such systems often required high-dimensional state space discretization and a broad set of initial conditions, resulting in significant computational complexity. Our approach aims to alleviate this issue by reducing the dimensionality of the system and utilizing the unscented transformation to estimate the output distribution. This technique allows us to account for multiple sources of uncertainty and high-dimensional system dynamics, while leveraging prior knowledge of noise statistics to inform the selection of initial conditions for experiments. As a result, our method enables the efficient assessment of controller performance and analysis of parametric dependencies with fewer experiments. To demonstrate the efficacy of our proposed method, we apply it to the analysis of a one-dimensional hopper and an underactuated bipedal walking simulation with a hybrid zero dynamics controller.


Subject(s)
Locomotion , Walking , Computer Simulation , Noise
19.
Acta Crystallogr D Struct Biol ; 79(Pt 10): 881-894, 2023 Oct 01.
Article in English | MEDLINE | ID: mdl-37712436

ABSTRACT

Septins are membrane-associated, GTP-binding proteins that are present in most eukaryotes. They polymerize to play important roles as scaffolds and/or diffusion barriers as part of the cytoskeleton. α-Helical coiled-coil domains are believed to contribute to septin assembly, and those observed in both human SEPT6 and SEPT8 form antiparallel homodimers. These are not compatible with their parallel heterodimeric organization expected from the current model for protofilament assembly, but they could explain the interfilament cross-bridges observed by microscopy. Here, the first structure of a heterodimeric septin coiled coil is presented, that between SEPT14 and SEPT7; the former is a SEPT6/SEPT8 homolog. This new structure is parallel, with two long helices that are axially shifted by a full helical turn with reference to their sequence alignment. The structure also has unusual knobs-into-holes packing of side chains. Both standard seven-residue (heptad) and the less common 11-residue (hendecad) repeats are present, creating two distinct regions with opposite supercoiling, which gives rise to an overall straight coiled coil. Part of the hendecad region is required for heterodimerization and therefore may be crucial for selective septin recognition. These unconventional sequences and structural features produce a metastable heterocomplex that nonetheless has enough specificity to promote correct protofilament assembly. For instance, the lack of supercoiling may facilitate unzipping and transitioning to the antiparallel homodimeric state.


Subject(s)
Proteins , Septins , Humans , Protein Domains , Protein Structure, Secondary , Proteins/chemistry , Septins/chemistry , X-Rays
20.
Eur J Psychotraumatol ; 14(2): 2258723, 2023.
Article in English | MEDLINE | ID: mdl-37736668

ABSTRACT

Background: Childhood emotional neglect (CEN) confers a great risk for developing multiple psychiatric disorders; however, the neural basis for this association remains unknown. Using a dynamic functional connectivity approach, this study aimed to examine the effects of CEN experience on functional brain networks in young adults.Method: In total, 21 healthy young adults with CEN experience and 26 without childhood trauma experience were recruited. The childhood trauma experience was assessed using the childhood trauma questionnaire (CTQ), and eligible participants underwent resting-state functional MRI. Sliding windows and k-means clustering were used to identify temporal features of large-scale functional connectivity states (frequency, mean dwell time, and transition numbers).Result: Dynamic analysis revealed two separate connection states: state 1 was more frequent and characterized by extensive weak connections between the brain regions. State 2 was relatively infrequent and characterized by extensive strong connections between the brain regions. Compared to the control group, the CEN group had a longer mean dwell time in state 1 and significantly decreased transition numbers between states 1 and 2.Conclusion: The CEN experience affects the temporal properties of young adults' functional brain connectivity. Young adults with CEN experience tend to be stable in state 1 (extensive weak connections between the brain regions), reducing transitions between states, and reflecting impaired metastability or functional network flexibility.


We focus solely on the childhood emotional neglect experience and its long-term effects on brain function.Eligible participants with and without childhood emotional neglect were identified through a large-scale screen among young adults.The results found childhood emotional neglect experiences have a long-term impact on brain flexibility.


Subject(s)
Adverse Childhood Experiences , Mental Disorders , Young Adult , Humans , Brain/diagnostic imaging , Health Status
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