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1.
Bioessays ; : e2400002, 2024 Jun 16.
Article in English | MEDLINE | ID: mdl-38881154

ABSTRACT

Precise DNA replication is fundamental for genetic inheritance. In eukaryotes, replication initiates at multiple origins that are first "licensed" and subsequently "fired" to activate DNA synthesis. Despite the success in identifying origins with specific DNA motifs in Saccharomyces cerevisiae, no consensus sequence or sequences with a predictive value of replication origins have been recognized in metazoan genomes. Rather, epigenetic rules and chromatin structures are believed to play important roles in governing the selection and activation of replication origins. We propose that replication initiation is facilitated by a group of sequence-specific "replication pioneer factors," which function to increase chromatin accessibility and foster a chromatin environment that is conducive to the loading of the prereplication complex. Dysregulation of the function of these factors may lead to gene duplication, genomic instability, and ultimately the occurrence of pathological conditions such as cancer.

2.
J Fish Biol ; 2024 Jun 27.
Article in English | MEDLINE | ID: mdl-38937946

ABSTRACT

Elasmobranch populations are in steep decline mainly due to overfishing bycatch, but parasites may accelerate the collapse of vulnerable and/or highly parasitized species. We therefore studied metazoan parasites of Rajidae from the northeast Atlantic: vulnerable Leucoraja fullonica, near-threatened Raja brachyura, Raja clavata, Raja microocellata and Raja undulata, and least-concerned Raja montagui and Leucoraja naevus. Overall prevalence varied from 19% for R. montagui to 100% for L. fullonica. Parasite communities differed between skate species, and prevalence and abundance were higher for L. fullonica, R. microocellata, and R. undulata. We recorded 11 parasite taxa in the study: three nematodes, six cestodes, one monogenean, and one myxosporean. Whatever the skate species, the parasite component community comprised at least two nematode taxa among Phocanema spp., Proleptus sp. and Anisakis simplex. DNA-sequencing revealed that Phocanema azarasi and Phocanema krabbei both occurred in R. microocellata and R. undulata. Phocanema spp. was first recorded in L. fullonica, L. naevus, R. microocellata, R. montagui, and R. undulata, as Proleptus sp. in L. fullonica, and A. simplex in L. fullonica and R. clavata, Rockacestus sp. and Nybelinia sp. in R. undulata, and gill-myxosporeans on L. fullonica, L. naevus, R. microocellata, and R. undulata. The occurrence of 16 new host-parasite associations suggests potential environmental changes. Information provided by trophically transmitted helminths confirmed an opportunistic skate diet based on crustaceans and fish. We discuss results in terms of host fitness loss, bioindicator role of parasites, and anisakiasis risk. We recommend incorporating parasitology in research to improve elasmobranch conservation.

4.
Int J Parasitol Parasites Wildl ; 24: 100935, 2024 Aug.
Article in English | MEDLINE | ID: mdl-38638363

ABSTRACT

To demonstrate predation and potential impacts of raccoons on various species, a total of 108 raccoons from aquatic-associated nature reserves and natural areas in three federal states of Germany, Hesse (n = 36), Saxony-Anhalt (n = 36) and Brandenburg (n = 36), were investigated from a dietary ecological perspective in the present study. Fecal analyses and stomach content examinations were conducted for this purpose. Additionally, as a supplementary method for analyzing the dietary spectrum of raccoons, the parasite fauna was considered, as metazoan parasites, in particular, can serve as indicators for the species and origin of food organisms. While stomach content analyses allow for a detailed recording of trophic relationships solely at the time of sampling, parasitological examinations enable inferences about more distant interaction processes. With their different developmental stages and heteroxenous life cycles involving specific, sometimes obligate, intermediate hosts, they utilize the food web to reach their definitive host. The results of this study clearly demonstrate that spawning areas of amphibians and reptiles were predominantly utilized as food resources by raccoons in the study areas. Thus, common toad (Bufo bufo), common newt (Lissotriton vulgaris), grass frog (Rana temporaria), and grass snake (Natrix natrix) were identified as food organisms for raccoons. The detection of the parasite species Euryhelmis squamula, Isthmiophora melis, and Physocephalus sexalatus with partially high infestation rates also suggests that both amphibians and reptiles belong to the established dietary components of raccoons from an ecological perspective, as amphibians and reptiles are obligate intermediate hosts in the respective parasitic life cycles of the detected parasites. The study clearly demonstrates that raccoons have a significant impact on occurrence-sensitive animal species in certain areas and, as an invasive species, can exert a negative influence on native species and ecosystems.

5.
Proc Natl Acad Sci U S A ; 121(11): e2314383121, 2024 Mar 12.
Article in English | MEDLINE | ID: mdl-38442178

ABSTRACT

Sponges (Porifera) contain many peptide-specialized metabolites with potent biological activities and significant roles in shaping marine ecology. It is well established that symbiotic bacteria produce bioactive "sponge" peptides, both on the ribosome (RiPPs) and nonribosomally. Here, we demonstrate that sponges themselves also produce many bioactive macrocyclic peptides, such as phakellistatins and related proline-rich macrocyclic peptides (PRMPs). Using the Stylissa carteri sponge transcriptome, methods were developed to find sequences encoding 46 distinct RiPP-type core peptides, of which ten encoded previously identified PRMP sequences. With this basis set, the genome and transcriptome of the sponge Axinella corrugata was interrogated to find 35 PRMP precursor peptides encoding 31 unique core peptide sequences. At least 11 of these produced cyclic peptides that were present in the sponge and could be characterized by mass spectrometry, including stylissamides A-D and seven previously undescribed compounds. Precursor peptides were encoded in the A. corrugata genome, confirming their animal origin. The peptides contained signal peptide sequences and highly repetitive recognition sequence-core peptide elements with up to 25 PRMP copies in a single precursor. In comparison to sponges without PRMPs, PRMP sponges are incredibly enriched in potentially secreted polypeptides, with >23,000 individual signal peptide encoding genes found in a single transcriptome. The similarities between PRMP biosynthetic genes and neuropeptides in terms of their biosynthetic logic suggest a fundamental biology linked to circular peptides, possibly indicating a widespread and underappreciated diversity of signaling peptide post-translational modifications across the animal kingdom.


Subject(s)
Peptides, Cyclic , Peptides , Animals , Peptides/genetics , Peptides, Cyclic/genetics , Amino Acid Sequence , Bandages , Protein Sorting Signals
6.
Parasitol Int ; 101: 102885, 2024 Aug.
Article in English | MEDLINE | ID: mdl-38461933

ABSTRACT

Host phylogeny and ecological convergence are two factors thought to influence the structure of parasite communities. The aims of this study were to determine the diversity of metazoan parasites of 10 sympatric fish species of the family Carangidae from the southeastern Gulf of California, and to analyze their similarity at infracommunity and component community levels, in order to determine if the host species, particularly those congeneric with similar ecological characteristics, exhibit similar assemblages of parasites. In total, 874 fish specimens were examined and 40 parasite species were identified. The component community was composed by 21 parasite species in Caranx caninus, 20 in C. caballus, 11 in C. vinctus, five in Chloroscombrus orqueta, four in Carangoides otrynter, seven in Hemicaranx leucurus, eight in Selene brevoortii, 14 in S. peruviana, and 11 in Trachinotus rhodopus. The metazoan parasite communities of C. vinctus, Ch. orqueta, H. leucurus, and S. brevoortii are reported here for the first time. The parasite communities of the remaining six carangid species have been reported from regions other than the Gulf of California. All fish species differed significantly regarding the diversity of their parasite infracommunities. This possibly is due to different patterns of habitat use among fish species, and because of the differential host specificity among parasite taxa. Nonetheless, when the analysis was restricted to common parasite species, some fish showed similar parasite infracommunities, particularly congeners of the genus Selene as well as C. caballus and C. vinctus. The component communities of species of Selene were highly similar (>65%), but the three species of Caranx were not. This result supports the hypothesis that congeneric fish species with similar ecological filters harbor similar parasite communities. However, the difference observed between C. caninus and C. caballus suggests that these species, despite being evolutionary and ecologically related, have different physiological or immunological characteristics (compatibility filters) that may result in different parasite communities.


Subject(s)
Fish Diseases , Animals , Fish Diseases/parasitology , Fish Diseases/epidemiology , California/epidemiology , Sympatry , Phylogeny , Perciformes/parasitology , Host Specificity , Host-Parasite Interactions
7.
Trends Parasitol ; 40(2): 164-175, 2024 02.
Article in English | MEDLINE | ID: mdl-38172015

ABSTRACT

The dissemination of protozoan and metazoan parasites through host tissues is hindered by cellular barriers, dense extracellular matrices, and fluid forces in the bloodstream. To overcome these diverse biophysical impediments, parasites implement versatile migratory strategies. Parasite-exerted mechanical forces and upregulation of the host's cellular contractile machinery are the motors for these strategies, and these are comparably better characterized for protozoa than for helminths. Using the examples of the protozoans, Toxoplasma gondii and Plasmodium, and the metazoan, Schistosoma mansoni, we highlight how quantitative tools such as traction force and reflection interference contrast microscopies have improved our understanding of how parasites alter host mechanobiology to promote their migration.


Subject(s)
Helminths , Parasites , Plasmodium , Toxoplasma , Animals , Biomechanical Phenomena , Helminths/physiology , Toxoplasma/physiology
8.
Nucleus ; 15(1): 2304503, 2024 Dec.
Article in English | MEDLINE | ID: mdl-38286757

ABSTRACT

Adar-mediated adenosine-to-inosine (A-to-I) RNA editing mainly occurs in nucleus and diversifies the transcriptome in a flexible manner. It has been a challenging task to identify beneficial editing sites from the sea of total editing events. The functional Ser>Gly auto-recoding site in insect Adar gene has uneditable Ser codons in ancestral nodes, indicating the selective advantage to having an editable status. Here, we extended this case study to more metazoan species, and also looked for all Drosophila recoding events with potential uneditable synonymous codons. Interestingly, in D. melanogaster, the abundant nonsynonymous editing is enriched in the codons that have uneditable counterparts, but the Adar Ser>Gly case suggests that the editable orthologous codons in other species are not necessarily edited. The use of editable versus ancestral uneditable codon is a smart way to infer the selective advantage of RNA editing, and priority might be given to these editing sites for functional studies due to the feasibility to construct an uneditable allele. Our study proposes an idea to narrow down the candidates of beneficial recoding sites. Meanwhile, we stress that the matched transcriptomes are needed to verify the conservation of editing events during evolution.


Subject(s)
Drosophila Proteins , RNA , Animals , RNA/genetics , Drosophila melanogaster/genetics , Drosophila melanogaster/metabolism , RNA Editing/genetics , Inosine/genetics , Codon , Adenosine Deaminase/genetics , Adenosine Deaminase/metabolism , Drosophila Proteins/genetics
9.
Front Immunol ; 14: 1250835, 2023.
Article in English | MEDLINE | ID: mdl-37908358

ABSTRACT

Fish, comprising over 27,000 species, represent the oldest vertebrate group and possess both innate and adaptive immune systems. The susceptibility of most wild fish to parasitic infections and related diseases is well-established. Among all vertebrates, the digestive tract creates a remarkably favorable and nutrient-rich environment, which, in turn, renders it susceptible to microparasites and macroparasites. Consequently, metazoan parasites emerge as important disease agents, impacting both wild and farmed fish and resulting in substantial economic losses. Given their status as pathogenic organisms, these parasites warrant considerable attention. Helminths, a general term encompassing worms, constitute one of the most important groups of metazoan parasites in fish. This group includes various species of platyhelminthes (digeneans, cestodes), nematodes, and acanthocephalans. In addition, myxozoans, microscopic metazoan endoparasites, are found in water-dwelling invertebrates and vertebrate hosts. It is worth noting that several innate immune cells within the fish alimentary canal and certain visceral organs (e.g., liver, spleen, and gonads) play active roles in the immune response against parasites. These immune cells include macrophages, neutrophils, rodlet cells, and mast cells also known as eosinophilic granular cells. At the site of intestinal infection, helminths often impact mucous cells number and alter mucus composition. This paper presents an overview of the state of the art on the occurrence and characteristics of innate immune cells in the digestive tract and other visceral organs in different fish-parasite systems. The data, coming especially from studies employed immunohistochemical, histopathological, and ultrastructural analyses, provide evidence supporting the involvement of teleost innate immune cells in modulating inflammatory responses to metazoan and protozoan parasitic infections.


Subject(s)
Parasites , Protozoan Infections , Animals , Fishes , Immunity, Innate , Gastrointestinal Tract
10.
Proc Natl Acad Sci U S A ; 120(38): e2305575120, 2023 09 19.
Article in English | MEDLINE | ID: mdl-37695909

ABSTRACT

Animal cytoplasmic fatty acid synthase (FAS) represents a unique family of enzymes that are classically thought to be most closely related to fungal polyketide synthase (PKS). Recently, a widespread family of animal lipid metabolic enzymes has been described that bridges the gap between these two ubiquitous and important enzyme classes: the animal FAS-like PKSs (AFPKs). Although very similar in sequence to FAS enzymes that produce saturated lipids widely found in animals, AFPKs instead produce structurally diverse compounds that resemble bioactive polyketides. Little is known about the factors that bridge lipid and polyketide synthesis in the animals. Here, we describe the function of EcPKS2 from Elysia chlorotica, which synthesizes a complex polypropionate natural product found in this mollusc. EcPKS2 starter unit promiscuity potentially explains the high diversity of polyketides found in and among molluscan species. Biochemical comparison of EcPKS2 with the previously described EcPKS1 reveals molecular principles governing substrate selectivity that should apply to related enzymes encoded within the genomes of photosynthetic gastropods. Hybridization experiments combining EcPKS1 and EcPKS2 demonstrate the interactions between the ketoreductase and ketosynthase domains in governing the product outcomes. Overall, these findings enable an understanding of the molecular principles of structural diversity underlying the many molluscan polyketides likely produced by the diverse AFPK enzyme family.


Subject(s)
Biological Products , Gastropoda , Polyketides , Animals , Polyketide Synthases/genetics , Fatty Acid Synthases , Lipids
11.
Proc Natl Acad Sci U S A ; 120(40): e2311872120, 2023 10 03.
Article in English | MEDLINE | ID: mdl-37748072

ABSTRACT

The planula larvae of the sea anemone Aiptasia have so far not been reported to complete their life cycle by undergoing metamorphosis into adult forms. This has been a major obstacle in their use as a model for coral-dinoflagellate endosymbiosis. Here, we show that Aiptasia larvae actively feed on crustacean nauplii, displaying a preference for live prey. This feeding behavior relies on functional stinging cells, indicative of complex neuronal control. Regular feeding leads to significant size increase, morphological changes, and efficient settlement around 14 d postfertilization. Surprisingly, the presence of dinoflagellate endosymbionts does not affect larval growth or settlement dynamics but is crucial for sexual reproduction. Our findings finally close Aiptasia's life cycle and highlight the functional nature of its larvae, as in Haeckel's Gastrea postulate, yet reveal its active carnivory, thus contributing to our understanding of early metazoan evolution.


Subject(s)
Anthozoa , Asteraceae , Dinoflagellida , Sea Anemones , Animals , Symbiosis , Gastrula , Larva
12.
Mar Pollut Bull ; 194(Pt B): 115374, 2023 Sep.
Article in English | MEDLINE | ID: mdl-37552925

ABSTRACT

Here, in an estuarine canal in southeast Brazil, we evaluated the potential for trace metal accumulation of the acanthocephalan parasite Floridosentis mugilis, which infects the fish host Mugil curema. The quantities of the trace metals were quantified using Inductively Coupled Plasma Mass Spectrometry (ICP-MS), which was used to analyze samples of the fish's muscle, intestine, and liver as well as the parasites. The parasites and the host's tissues had significantly different trace metal concentrations, according to our data. Furthermore, some metals have quite high bioconcentration factors, including Al, Cr, Ni, and Cd. We also found that the trace metal concentrations in the parasites were impacted by the sizes of the parasitic infrapopulations, with smaller infrapopulations tending to accumulate more metals. This study shows this acanthocephalan species' effective ability to store metals and is the first to investigate metal accumulation using it as a model.


Subject(s)
Acanthocephala , Metals, Heavy , Parasites , Smegmamorpha , Water Pollutants, Chemical , Animals , Brazil , Environmental Monitoring/methods , Water Pollutants, Chemical/analysis , Acanthocephala/chemistry , Metals/analysis , Metals, Heavy/analysis
13.
Biol Rev Camb Philos Soc ; 98(6): 2284-2306, 2023 12.
Article in English | MEDLINE | ID: mdl-37553111

ABSTRACT

The evolutionary origin of eukaryotes spurred the transition from prokaryotic-like translation to a more sophisticated, eukaryotic translation. During this process, successive gene duplication of a single, primordial eIF4E gene encoding the mRNA cap-binding protein eukaryotic translation initiation factor 4E (eIF4E) gave rise to a plethora of paralog genes across eukaryotes that underwent further functional diversification in RNA metabolism. The ability to take different roles is due to eIF4E promiscuity in binding many partner proteins, rendering eIF4E a highly versatile and multifunctional player that functions as a molecular wildcard. Thus, in metazoans, eIF4E paralogs are involved in various processes, including messenger RNA (mRNA) processing, export, translation, storage, and decay. Moreover, some paralogs display differential expression in tissues and developmental stages and show variable biochemical properties. In this review, we discuss recent advances shedding light on the functional diversification of eIF4E in metazoans. We emphasise humans and two phylogenetically distant species which have become paradigms for studies on development, namely the fruit fly Drosophila melanogaster and the roundworm Caenorhabditis elegans.


Subject(s)
Drosophila melanogaster , Eukaryotic Initiation Factor-4E , Humans , Animals , Drosophila melanogaster/genetics , Eukaryotic Initiation Factor-4E/genetics , Eukaryotic Initiation Factor-4E/chemistry , Eukaryotic Initiation Factor-4E/metabolism , RNA, Messenger/genetics , RNA, Messenger/metabolism , RNA/metabolism
14.
Zool Res ; 44(4): 782-792, 2023 Jul 18.
Article in English | MEDLINE | ID: mdl-37464936

ABSTRACT

Astyanax mexicanus has repeatedly colonized cave environments, displaying evolutionary parallelisms in many troglobitic traits. Despite being a model system for the study of adaptation to life in perpetual darkness, the parasites that infect cavefish are practically unknown. In this study, we investigated the macroparasite communities in 18 cavefish populations from independent lineages and compared them with the parasite diversity found in their sister surface fish populations, with the aim of better understanding the role that parasites play in the colonization of new environments. Within the cavefish populations, we identified 13 parasite taxa, including a subset of 10 of the 27 parasite taxa known for the surface populations. Parasites infecting the cavefish belong to five taxonomic groups, including trematodes, monogeneans, nematodes, copepods, and acari. Monogeneans are the most dominant group, found in 14 caves. The macroparasites include species with direct life cycles and trophic transmission, including invasive species. Surprisingly, paired comparisons indicate higher parasite richness in the cavefish than in the surface fish. Spatial variation in parasite composition across the caves suggests historical and geographical contingencies in the host-parasite colonization process and potential evolution of local adaptations. This base-line data on parasite diversity in cavefish populations of A. mexicanus provides a foundation to explore the role of divergent parasite infections under contrasting ecological pressures (cave vs. surface environments) in the evolution of cave adaptive traits.


Subject(s)
Characidae , Host-Parasite Interactions , Animals , Darkness , Adaptation, Physiological , Caves , Biological Evolution
15.
J Biol Chem ; 299(8): 105017, 2023 08.
Article in English | MEDLINE | ID: mdl-37414145

ABSTRACT

Much is known about the generation, removal, and roles of 5-methylcytosine (5mC) in eukaryote DNA, and there is a growing body of evidence regarding N6-methyladenine, but very little is known about N4-methylcytosine (4mC) in the DNA of eukaryotes. The gene for the first metazoan DNA methyltransferase generating 4mC (N4CMT) was reported and characterized recently by others, in tiny freshwater invertebrates called bdelloid rotifers. Bdelloid rotifers are ancient, apparently asexual animals, and lack canonical 5mC DNA methyltransferases. Here, we characterize the kinetic properties and structural features of the catalytic domain of the N4CMT protein from the bdelloid rotifer Adineta vaga. We find that N4CMT generates high-level methylation at preferred sites, (a/c)CG(t/c/a), and low-level methylation at disfavored sites, exemplified by ACGG. Like the mammalian de novo 5mC DNA methyltransferase 3A/3B (DNMT3A/3B), N4CMT methylates CpG dinucleotides on both DNA strands, generating hemimethylated intermediates and eventually fully methylated CpG sites, particularly in the context of favored symmetric sites. In addition, like DNMT3A/3B, N4CMT methylates non-CpG sites, mainly CpA/TpG, though at a lower rate. Both N4CMT and DNMT3A/3B even prefer similar CpG-flanking sequences. Structurally, the catalytic domain of N4CMT closely resembles the Caulobacter crescentus cell cycle-regulated DNA methyltransferase. The symmetric methylation of CpG, and similarity to a cell cycle-regulated DNA methyltransferase, together suggest that N4CMT might also carry out DNA synthesis-dependent methylation following DNA replication.


Subject(s)
DNA-Cytosine Methylases , Rotifera , Animals , DNA Methylation , DNA-Cytosine Methylases/chemistry , DNA-Cytosine Methylases/isolation & purification , Mammals/metabolism , Rotifera/classification , Rotifera/enzymology
16.
Annu Rev Microbiol ; 77: 499-516, 2023 09 15.
Article in English | MEDLINE | ID: mdl-37406343

ABSTRACT

The emergence of animals from their unicellular ancestors is a major evolutionary event. Thanks to the study of diverse close unicellular relatives of animals, we now have a better grasp of what the unicellular ancestor of animals was like. However, it is unclear how that unicellular ancestor of animals became the first animals. To explain this transition, two popular theories, the choanoblastaea and the synzoospore, have been proposed. We will revise and expose the flaws in these two theories while showing that, due to the limits of our current knowledge, the origin of animals is a biological black swan event. As such, the origin of animals defies retrospective explanations. Therefore, we should be extra careful not to fall for confirmation biases based on few data and, instead, embrace this uncertainty and be open to alternative scenarios. With the aim to broaden the potential explanations on how animals emerged, we here propose two novel and alternative scenarios. In any case, to find the answer to how animals evolved, additional data will be required, as will the hunt for microscopic creatures that are closely related to animals but have not yet been sampled and studied.


Subject(s)
Biological Evolution , Animals , Retrospective Studies
17.
Folia Parasitol (Praha) ; 702023 Apr 28.
Article in English | MEDLINE | ID: mdl-37265202

ABSTRACT

Strange oceanographic events such as El Niño and La Niña may have indirect effects on the local transmission processes of intestinal parasites due to the reduction or increase in populations of potential intermediate or definitive hosts. A total of 713 individuals of Lutjanus inermis (Peters) were collected over an 8-year period (October 2015 to July 2022) from Acapulco Bay, Mexico. Parasite communities in L. inermis were quantified and analysed to determine if they experienced interannual variations in species composition and structure as a result of local biotic and abiotic factors influenced by oceanographic events, such as El Niño-Southern Oscillation (ENSO), or La Niña, the cool phase of the ENSO climate pattern. Twenty-six taxa of metazoan parasites were recovered and identified: two Monogenea, eight Digenea, two Acanthocephala, four Nematoda, one Cestoda, seven Copepoda, and two Isopoda. Species richness at the component community level (8 to 17 species) was similar to reported richness in other species of Lutjanus Bloch. Parasite communities of L. inermis exhibited high inter-annual variation in the abundance of component species of parasite. However, the species richness and diversity were fairly stable over time. Climatic episodes of El Niño and La Niña probably generated notable changes in the structure of local food webs, thus indirectly influencing the transmission rates of intestinal parasite species. Changes in species composition and community structure of parasites possibly were due to variations in feeding behaviour during the events and differences in the host body size.


Subject(s)
Acanthocephala , Nematoda , Parasites , Perciformes , Humans , Animals , Perciformes/parasitology , El Nino-Southern Oscillation
18.
BMC Biol ; 21(1): 80, 2023 04 13.
Article in English | MEDLINE | ID: mdl-37055747

ABSTRACT

BACKGROUND: Gene duplication is thought to be a central process in evolution to gain new functions. The factors that dictate gene retention following duplication as well paralog gene divergence in sequence, expression and function have been extensively studied. However, relatively little is known about the evolution of promoter regions of gene duplicates and how they influence gene duplicate divergence. Here, we focus on promoters of paralog genes, comparing their similarity in sequence, in the sets of transcription factors (TFs) that bind them, and in their overall promoter architecture. RESULTS: We observe that promoters of recent duplications display higher sequence similarity between them and that sequence similarity rapidly declines between promoters of more ancient paralogs. In contrast, similarity in cis-regulation, as measured by the set of TFs that bind promoters of both paralogs, does not simply decrease with time from duplication and is instead related to promoter architecture-paralogs with CpG Islands (CGIs) in their promoters share a greater fraction of TFs, while CGI-less paralogs are more divergent in their TF binding set. Focusing on recent duplication events and partitioning them by their duplication mechanism enables us to uncover promoter properties associated with gene retention, as well as to characterize the evolution of promoters of newly born genes: In recent retrotransposition-mediated duplications, we observe asymmetry in cis-regulation of paralog pairs: Retrocopy genes are lowly expressed and their promoters are bound by fewer TFs and are depleted of CGIs, in comparison with the original gene copy. Furthermore, looking at recent segmental duplication regions in primates enable us to compare successful retentions versus loss of duplicates, showing that duplicate retention is associated with fewer TFs and with CGI-less promoter architecture. CONCLUSIONS: In this work, we profiled promoters of gene duplicates and their inter-paralog divergence. We also studied how their characteristics are associated with duplication time and duplication mechanism, as well as with the fate of these duplicates. These results underline the importance of cis-regulatory mechanisms in shaping the evolution of new genes and their fate following duplication.


Subject(s)
Evolution, Molecular , Gene Duplication , Animals , Promoter Regions, Genetic , Transcription Factors , Mammals/genetics
19.
Parasitol Res ; 122(5): 1053-1070, 2023 May.
Article in English | MEDLINE | ID: mdl-36894783

ABSTRACT

Despite the extensive information on the effects of habitat alteration on the structure of helminth communities in small mammals, the evidence is still inconclusive. A systematic review was carried out using the PRISMA (Preferred Reporting Items for Systematic Review and Meta-Analysis) guideline to compile and synthesize available literature on the influence of habitat alteration on the structure of helminth communities in small mammals. The aim of this review was to describe the variation in infection rates of helminth species associated with habitat alteration and to discuss the theoretical framework that may explain such changes in relation to parasite, host, and environmental features. Twenty-three scientific articles published between 2005 and 2022 were reviewed, 22 of which investigated parasite prevalence, 10 parasite burden, and 14 parasite richness in both altered and natural habitats. Information in assessed articles suggests that the structure of helminth communities in small mammals can be impacted by anthropogenic habitat alteration in various ways. Infection rates of monoxenous and heteroxenous helminths may increase or decrease in small mammals depending on whether their hosts (definitive and intermediate) are available, and environmental and host conditions modify the survival and transmission of parasitic forms. Also, given that habitat alteration may favor inter-species contacts, transmission rates of low host-specific helminths could be increased due to exposure to new reservoir hosts. In a continually changing world, it is essential to assess the spatio-temporal variations of helminth communities in wildlife inhabiting altered and natural habitats to determine potential impacts on wildlife conservation and public health.


Subject(s)
Helminthiasis, Animal , Helminths , Parasites , Animals , Animals, Wild , Ecosystem , Helminthiasis, Animal/epidemiology , Helminthiasis, Animal/parasitology , Mammals
20.
Int J Parasitol Parasites Wildl ; 20: 79-88, 2023 Apr.
Article in English | MEDLINE | ID: mdl-36688078

ABSTRACT

The invasive raccoon (Procyon lotor) is an abundant carnivore and considered as an important potential vector of infectious diseases and parasites in Europe. Raccoons show a broad, opportunistic, omnivorous food spectrum. Food supply and habitat quality in urban areas are very attractive for the generalist raccoon. This inevitably leads to increased interaction with humans, domestic animals and livestock, making the raccoon a potentially suitable zoonosis vector. In its autochthonous range, especially in the Eastern and Midwestern United States, the raccoon has been studied very intensively since the beginning of the 20th century. Whereas, basic field biology and parasitology studies in Germany and Europe are lacking and have only been conducted sporadically, regionally and on small sample sizes. In the presented study 234 raccoons from central Germany were comprehensively examined for their metazoan parasite fauna. The present study shows for the first time an extremely diverse parasite fauna in raccoons outside their native range and proves their essential role as intermediate hosts and hosts for ecto- and endoparasites. A total of 23 different parasite species were identified, five of which are human pathogens, 14 of which are new for the parasite fauna of raccoons in Europe. The human pathogenic raccoon roundworm Baylisascaris procyonis is the most common parasite species in this study, with a prevalence of up to 95%. The digenetic trematode Plagiorchis muris, another human pathogenic parasite species, was detected for the first time in raccoons. The ongoing spread of invasive carnivores and the associated spread and transmission of their parasites and other pathogens increases the potential health risk of wild and farmed animals as well as humans. An increase in parasitic diseases in humans (e.g. raccoon roundworm) is to be expected, especially in urban areas, where raccoons are becoming more and more abundant.

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