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1.
Braz J Microbiol ; 54(4): 3127-3135, 2023 Dec.
Article in English | MEDLINE | ID: mdl-37673840

ABSTRACT

The rhizobia-Desmodium (Leguminosae, Papilionoideae) symbiosis is generally described by its specificity with alpha-rhizobia, especially with Bradyrhizobium. Our study aimed to isolate rhizobia from root nodules of native D. barbatum, D. incanum, and D. discolor, collected in remnants of the biomes of Atlantic Forest and Cerrado in protected areas of the Paraná State, southern Brazil. Based on the 16S rRNA phylogeny, 18 out of 29 isolates were classified as Alphaproteobacteria (Bradyrhizobium and Allorhizobium/Rhizobium) and 11 as Betaproteobacteria (Paraburkholderia). Phylogeny of the recA gene of the alpha-rhizobia resulted in ten main clades, of which two did not group with any described rhizobial species. In the 16S rRNA phylogeny of the beta-rhizobia, Paraburkholderia strains from the same host and conservation unity occupied the same clade. Phenotypic characterization of representative strains revealed the ability of Desmodium rhizobia to grow under stressful conditions such as high temperature, salinity, low pH conditions, and tolerance of heavy metals and xenobiotic compounds. Contrasting with previous reports, our results revealed that Brazilian native Desmodium can exploit symbiotic interactions with stress-tolerant strains of alpha- and beta-rhizobia. Stress tolerance can highly contribute to the ecological success of Desmodium in this phytogeographic region, possibly relating to its pioneering ability in Brazil. We propose Desmodium as a promising model for studies of plant-rhizobia interactions.


Subject(s)
Bradyrhizobium , Burkholderiaceae , Fabaceae , Rhizobium , Rhizobium/genetics , RNA, Ribosomal, 16S/genetics , Fabaceae/microbiology , Forests , Burkholderiaceae/genetics , Phylogeny , Symbiosis , Root Nodules, Plant/microbiology , DNA, Bacterial/genetics , Sequence Analysis, DNA
2.
Zookeys ; 1173: 97-110, 2023.
Article in English | MEDLINE | ID: mdl-37577152

ABSTRACT

Black corals (Anthozoa: Antipatharia) are an anthozoan lineage in the class Hexacorallia that occur across a wide range of habitats from the tropics to the poles and from surface waters to depths deeper than 8000 m. A new species of black coral, Aphanipathespuertoricoensissp. nov., collected with a remotely operated vehicle 357 m deep off Puerto Rico is recognized in the family Aphanipathidae. The new species is characterized by very long and loosely coiled primary branches and up to 0.5 mm tall spines with as many as 40 or more small conical tubercles. A phylogeny composed of 13 taxa that are closely related to the new species was reconstructed from 793 nuclear loci to show their systematic relationships. Our study integrated morphological and genomic data to show that this new species is distinct from other species in the genus Aphanipathes. Furthermore, our results add to the growing knowledge of black coral diversity, while further demonstrating the need for exploration in deep waters of the Caribbean Sea.

3.
Data Brief, v. 46, 108885, fev. 2023
Article in English | Sec. Est. Saúde SP, SESSP-IBPROD, Sec. Est. Saúde SP | ID: bud-4896

ABSTRACT

This article on biodiversity and life history data in huntsman spiders (Araneae: Sparassidae) includes the following: molecular data deposited on GenBank for 72 individuals representing 27 species in seven subfamilies, life history and behavioral data on 40 huntsman species from over two decades of observations, and morphological data for 26 species in the subfamily Deleninae as well as an undescribed representative of the genus Damastes. Molecular data include the nuclear genes histone H3 (H3) and 28S ribosomal RNA (28S rRNA), mitochondrial genes cytochrome c oxidase subunit I (COI) and 16S ribosomal RNA (16S rRNA) were sequenced via Sanger sequencing by J.A. Gorneau. Life history data were collected in the field and in the lab by L.S. Rayor and include data on age at sexual maturity, lifespan, social classification, egg sac shape, how the egg sac is attached or carried, retreat location, retreat modification, retreat size relative to adult female body size, approximate mean body mass, and mean cephalothorax width. Morphological data on Deleninae and one Damastes sp. were scored by C.A. Rheims and includes information on the following characters: prosoma (fovea, posterior eye row shape (PER), anterior median eye (AME) diameter, AME-AME and PME-PME interdistances), male palp (embolic sclerite (PS), conductor sclerotized base (SB), tegular apophysis (TA), flange (f)) and female epigyne and vulva (epigynal sclerite (ES), spermathecal sacs (SS)). These data were used to clarify relationships among the Australian endemic Deleninae, as well as global patterns in sparassid evolution. The data demonstrate phylogenetic patterns in life history, social evolution, and natural history among the sparassids. These data contribute to future comparative research on sparassid systematics, evolution, and behavior. This data article complements a research article published in Molecular Phylogenetics and Evolution.

4.
J Eukaryot Microbiol ; 69(4): e12920, 2022 07.
Article in English | MEDLINE | ID: mdl-35491969

ABSTRACT

The Gonyaulacales includes some of the most intensely investigated genera of harmful dinoflagellates. The knowledge of the evolutionary relationships is necessary, but incomplete because genera such as Schuettiella have not been studied by contemporary methods. The morphology and molecular phylogeny of type species of the genus Schuettiella, S. mitra, have been investigated from Brazil. The first scanning electron micrographs reveal a distinctive thecal ornamentation with sunken stripes and rows with exclamation mark-shaped pores in the postcingular plates. The Kofoidean plate formula Po, 2', 1a, 6″ is re-interpreted as Po, 3', 1a, 5″, after considering the narrow mid-ventral plate as homologous to the first apical plate, although it does not reach the apex. In the rRNA gene phylogenies, the sequences of S. mitra clustered as an independent lineage closely related to the globular and planktonic Protoceratiaceae (Ceratocorys, Pentaplacodinium, Protoceratium) and the laterally compressed benthic genus Carinadinium (formerly Thecadinium). Schuettiella and Carinadinium are considered members of the Protoceratiaceae. The possession of a single anterior intercalary plate is an apomorphic trait of this family. This reinforces the value of the number of intercalary plates as a diagnostic character for the classification of the gonyaulacalean families despite the differences in the general appearance.


Subject(s)
Dinoflagellida , Brazil , Dinoflagellida/genetics , Humans , Phylogeny
5.
Mol Phylogenet Evol, v. 174, 107530, set. 2022
Article in English | Sec. Est. Saúde SP, SESSP-IBPROD, Sec. Est. Saúde SP | ID: bud-4378

ABSTRACT

Huntsman spiders (Araneae: Sparassidae) are among the most speciose spider families, with a near-worldwide distribution, diverse habitats, equally diverse life histories, and five prolonged subsocial species. Previous molecular phylogenies have focused on individual subfamilies or clades. Here, we provide a phylogenetic inference with broadened sampling from 37 genera and eight of the eleven sparassid subfamilies. We increased taxon sampling by including species not previously sequenced and most available data on GenBank of two mitochondrial (COI, 16S rRNA) and two nuclear (H3, 28S rRNA) genes for a total of 262 ingroup taxa and nine outgroup taxa. Divergence dates were estimated using outgroup fossil taxa suggesting the sparassids evolved ∼100 mya (stem age), while the clade containing all subfamilies except Sparianthinae evolved ∼90 mya (stem age). Using a stochastic map approach with 40 species, this is the first sparassid phylogeny to incorporate extensive biology and life history data. Correlations of life history traits with solitary, subsocial, and prolonged subsocial behavior are examined using the D-test. Sparassid sociality is associated with life history traits that allow developing spiders to remain in their natal retreat longer (e.g., larger permanent retreats, plastered egg sacs, and ontogenetically delayed foraging), but is unrelated to body size or lifespan. Detailed morphological scoring of the endemic Australian subfamily Deleninae contextualizes existing molecular data, including in the Isopeda-Holconia-Isopedella complex. This study supports the monophyly of many major lineages, including for the first time, the Sparianthinae, but indicates multiple clades (Sparassinae and Eusparassinae) are paraphyletic and need further revision.

6.
Photodiagnosis Photodyn Ther ; 35: 102414, 2021 Sep.
Article in English | MEDLINE | ID: mdl-34186264

ABSTRACT

BackgroundFusarium has been considered an opportunistic pathogen, causing several infections in humans, including onychomycosis. In addition, a high resistance to conventional antifungals has been linked to this genus. Photodynamic Therapy (PDT), known as a non-invasive therapy, can be an alternative treatment for fungal infections, based on the excitation of a photosensitizing compound (PS) by a specific length of light, causing damage to the target. The aim of this study was to evaluate the effects of a formulation of Hypericin (Hyp) encapsulated in Pluronic™ (P123), via photodynamic therapy (PDT), on planktonic cells and biofilms in Fusarium spp. using in vitro and ex vivo assays. Materials & Methods epidemiology studies about Fusarium spp. in onychomycosis was perfomed, carried out molecular identification, compared the antifungal activity of the conventional antifungals with PDT with encapsulated Hypericin (Hyp-P123), carried out detection of reactive oxygen species, and measured the antibiofilm effect of the Hyp-P123-PDT in vitro and in an ex vivo model of onychomycosis. Results Hyp-P123-PDT exhibited a fungicidal effect in vitro with reductions ≥ 3 log10. ROS generation increased post-Hyp-P123-PDT in Fusarium spp. Hyp-P123-PDT showed a potent inhibitory effect on adhesion-phase and mature biofilms in vitro tests and an ex vivo model of onychomycosis (p<0.0001). Conclusion Hyp-P123-PDT had a potent effect against Fusarium spp., suggesting that photodynamic therapy with Hyp-P123 is a safe and promising treatment for onychomycosis in clinical practice.


Subject(s)
Fusarium , Onychomycosis , Perylene , Photochemotherapy , Anthracenes , Humans , Onychomycosis/drug therapy , Perylene/analogs & derivatives , Perylene/pharmacology , Photochemotherapy/methods , Photosensitizing Agents/pharmacology
7.
J Parasitol ; 107(3): 388-403, 2021 05 01.
Article in English | MEDLINE | ID: mdl-33971012

ABSTRACT

Two new species of Viannaia from the intestine of the North American opossums, Didelphis virginiana (Virginia opossum), and Philander opossum (gray four-eyed opossum), are described based on morphological and molecular data, through an integrative taxonomic approach. Maximum likelihood and Bayesian inference analyses for each dataset and the concatenated dataset were performed using a mitochondrial cytochrome c oxidase subunit 1 (COI) gene, and the nuclear ribosomal internal transcribed spacer region (ITS1-5.8S-ITS2). The phylogenetic analyses revealed 2 new species that occur in Mexico, one from the western state of Colima and another from the southern state of Chiapas. Our phylogenetic trees for both molecular markers and concatenated datasets yielded similar topologies with high bootstrap values and posterior probabilities. Viannaia is recovered as a monophyletic group, but the family Viannaiidae appears as non-monophyletic, due to the position of Travassostrongylus scheibelorum, similar to previous studies. Finally, the morphology of Viannaia and Hoineffia is discussed.


Subject(s)
Opossums/parasitology , Trichostrongyloidea/classification , Trichostrongyloidiasis/veterinary , Animals , Bayes Theorem , DNA, Helminth/chemistry , DNA, Helminth/isolation & purification , DNA, Intergenic/genetics , Electron Transport Complex IV/genetics , Female , Genes, Mitochondrial , Intestines/parasitology , Likelihood Functions , Male , Mexico/epidemiology , Phylogeny , RNA, Ribosomal, 5.8S/genetics , Sequence Alignment , Trichostrongyloidea/anatomy & histology , Trichostrongyloidea/genetics , Trichostrongyloidea/ultrastructure , Trichostrongyloidiasis/epidemiology , Trichostrongyloidiasis/parasitology
8.
J Phycol ; 57(2): 694-697, 2021 04.
Article in English | MEDLINE | ID: mdl-33492676

ABSTRACT

Gymnodinium gracile, described from the coasts of Denmark in 1881, is one of the first described unarmored dinoflagellates. Individuals that morphologically fit with the original description were isolated from the English Channel (North-East Atlantic). The SSU rRNA gene sequences were identical to the sequences identified as Balechina pachydermata and Gymnodinium amphora from the Mediterranean Sea and Brazil. We propose the transfer of Gymnodinium gracile into the genus Balechina as B. gracilis comb. nov. These sequences constitute an independent lineage, clustering with numerous environmental sequences from polar to tropical waters. The widespread distribution, the high plasticity in size, shape and coloration and the difficulties in discerning the fine longitudinal striae have contributed to the description of numerous synonyms: Amphidinium vasculum, Balechina pachydermata (=Gymnodinium pachydermatum), Gymnodinium achromaticum, G. abbreviatum, G. amphora, G. dogielii, G. lohmannii (=G. roseum sensu Lohmann 1908), G. situla, and Gyrodinium cuneatum (=G. gracile sensu Pouchet 1885).


Subject(s)
Dinoflagellida , Brazil , DNA, Ribosomal/genetics , Dinoflagellida/genetics , Mediterranean Sea , Phylogeny , Sequence Analysis, DNA
9.
Salamandra, v. 57, n. 3, p. 400-412, ago. 2021
Article in English | Sec. Est. Saúde SP, SESSP-IBPROD, Sec. Est. Saúde SP | ID: bud-4018

ABSTRACT

Tantilla is one of the most diverse genera among colubrids, with 67 species arranged in six phenotypically recognized species groups. Tantilla boipiranga is the most recently described species within the T. melanocephala group, and it was described based on a small type series, collected in the rupestrian grasslands of south-eastern Brazil. The morphological diversity and the phylogenetic affinity of this species remain poorly known. Here, based on the assessment of recently collected specimens in combination with results of a molecular phylogenetic analysis, we evaluate the morphological variation within T. boipiranga and its phylogenetic position. Our analyses confirm T. boipiranga as genetically distinct from its generic counterparts, and diagnosable based on a combination of colour pattern, meristic counts, and hemipenial morphology. However, contrary to its original description, the hemipenial ornamentation does not differen-tiate T. boipiranga from the highly variable T. melanocephala. In our phylogenetic analysis, T. boipiranga is retrieved as a monophyletic group, nested within the diversity of T. melanocephala and sister to a clade composed by specimens from south-eastern Brazil. Tantilla melanocephala is recovered as a highly diverse lineage, indicating the possible presence of undescribed species. Additionally, our analysis indicates that the T. coronata and T. planiceps species group are mono-phyletic, while the T. taeniata species group is paraphyletic and the only sampled species for the T. calamarina group is nested within the T. melanocephala group. Our results suggest that the phenotypic evolution within the genus is probably more complex than previously recognized, and some colouration patterns used to define the groups can in fact represent phenotypical convergences. Moreover, our phylogenetic analysis suggests a strong signal of geographical structure in the tree topology. Three main geographical lineages were found, a North American, a South American and a Central Ameri-can. The first two lineages were recovered as monophyletic, while the latter is paraphyletic, with Central American species positioned as sister groups of both, the North American and the South American clades. Although a more comprehensive phylogenetic analysis is needed, our study strongly indicates the existence of hidden diversity within the T. melanocephala group and that Tantilla represents an ideal model to evaluate the validity of phenotypical groups in snake systematics and to study the driven mechanisms of morphological evolution.

10.
Zootaxa ; 4877(2): zootaxa.4877.2.7, 2020 Nov 10.
Article in English | MEDLINE | ID: mdl-33311193

ABSTRACT

We describe a new species of diurnal gecko, Gonatodes castanae sp. nov. from the foothills of the Serranía de San Lucas, municipality of Norosí, Department of Bolívar, Colombia. The new species differs from all species in the genus by the combination of the following characters: moderate size, subcaudal scale pattern type B (1'1'1''), typically two rows of lateral scales on the digits, and aspects of color pattern in males (dorsum, flanks, limbs and tail with white ocelli on a black background) and females (dorsum, flanks, limbs and tail with brown to black reticulations and withe spots on a greenish-yellow background). The validity of the new species is also supported by molecular analyses. This species inhabits relicts of riverine forests at about 150 m above sea level (a.s.l.). Gonatodes castanae increases the number of known species in this genus to 34 and the species registered for Colombia to eight.


Subject(s)
Lizards , Animal Distribution , Animal Structures , Animals , Colombia , Female , Forests , Male
11.
Int J Parasitol Parasites Wildl ; 13: 119-129, 2020 Dec.
Article in English | MEDLINE | ID: mdl-32995268

ABSTRACT

The genus Boehmiella was initially described as a member of the family Trichostrongylidae. Subsequently, it was assigned to the subfamily Haemonchinae in the family Haemonchidae. We analyzed parasites of spiny tree-rats, Mesomys hispidus, collected in the Amazon rainforest, which were identified as B. wilsoni based on integrative taxonomy. Using morphology, morphometry, and scanning electron microscopy (SEM), we added new data to the original description of the species. We also inferred phylogenetic hypotheses for its relationships within the Trichostrongylina, based on partial nuclear 18S and 28S rRNA genes, through Maximum Likelihood and Bayesian analyses. In conclusion, B. wilsoni does not belong to the family Haemonchidae, nor is it closely related to any other trichostrongylin family, and therefore, we propose the establishment of a new family, Boehmiellidae fam. nov., to which the genus Boehmiella is allocated.

12.
Zookeys ; 925: 141-161, 2020.
Article in English | MEDLINE | ID: mdl-32317854

ABSTRACT

Adults of trematodes in the genus Xystretrum Linton, 1910 (Gorgoderidae, Gorgoderinae) are parasites found exclusively in the urinary bladders of tetraodontiform fishes. However, limited and unclear morphological data were used to describe the type species, X. solidum Linton, 1910. Here, we present the first detailed morphological information for a member of Xystretrum. Morphological characters were described using light and scanning electron microscopy (SEM) of Xystretrum specimens from Sphoeroides testudineus (Linnaeus) (Tetraodontiformes, Tetraodontidae), collected at six localities off the northern Yucatan Peninsula coast of the Gulf of Mexico. We also compared sequence fragments of the 28S (region D1-D3) ribosomal DNA and mitochondrial Cytochrome c oxidase subunit 1 (COI) gene with those available for other gorgoderine taxa. We assigned these Xystretrum specimens to X. solidum, despite the incompleteness of published descriptions. The data provide a foundation for future work to validate the identities of X. solidum, X. papillosum Linton, 1910 and X. pulchrum (Travassos, 1920) with new collections from the type localities and hosts. Comparisons of 28S and COI regions described here also provide an opportunity to evaluate the monophyletic status of Xystretrum.

13.
Zootaxa ; 4729(2): zootaxa.4729.2.4, 2020 Jan 29.
Article in English | MEDLINE | ID: mdl-32229861

ABSTRACT

We describe a new sphaerodactylid lizard of the genus Gonatodes from the western flank of the Cordillera Oriental, Santander Department, Colombia based on morphological and molecular data. The new species is distinguished from all congeners by having a medium body size, by the absence of both a supraciliary spine and of clusters of distinctly enlarged conical scales on the sides and by having a subcaudal scale pattern (1'1") and a cryptic dorsal color pattern in both sexes. Additionally, we describe for the first time the hemipenial morphology for a species of the genus. The new species increases the number of Gonatodes known from Colombia to eight and is the only known species of the country, as well as the second known mainland species of the genus not exhibiting sexual dichromatism.


Subject(s)
Lizards , Animals , Body Size , Colombia , Female , Male , Snakes
14.
Mol Phylogenet Evol ; 147: 106801, 2020 06.
Article in English | MEDLINE | ID: mdl-32217167

ABSTRACT

The wide disparity in adult body size observed both within and among animal taxa has long attracted widespread interest, with several general rules having been proposed to explain trends in body size evolution. Adult body size disparity among the cephalopod mollusks is remarkable, with adult body sizes ranging from a few centimeters to several meters. Some of the smallest cephalopods are found within Pickfordiateuthis, a group comprising three described species of squid found in the western Atlantic and tropical eastern Pacific. Pickfordiateuthis pulchella, the type species of the genus, was initially proposed to be closely related to the loliginid squids (Loliginidae), with subsequent descriptions of additional species supporting a placement within Loliginidae. Pickfordiateuthis is remarkable in that all species reach sexual maturity at about one-fifth to one-tenth the size seen in most loliginid species. To date, no phylogenetic analyses have included representatives of Pickfordiateuthis. To infer the phylogenetic position of Pickfordiateuthis and explore its implications for body size evolution, we collected specimens of Pickfordiateuthis pulchella from Brazilian waters and sequenced regions of two loci-the mitochondrial large ribosomal subunit (rrnL a.k.a. 16S) gene and the nuclear gene rhodopsin. Maximum likelihood and Bayesian analyses of these sequences support a placement of Pickfordiateuthis pulchella as sister to a clade comprising the Western Hemisphere loliginid genera Doryteuthis and Lolliguncula. Analyses of body size evolution within Loliginidae suggest that a shift to a smaller body size optimum occurred along the lineage leading to P. pulchella, with some evidence of shifts toward larger sizes in the ancestors of Loligo and Sepioteuthis; these inferences seem to be robust to phylogenetic uncertainty and incomplete taxon sampling. The small size and juvenile-like morphological traits seen in adult Pickfordiateuthis (e.g., sepiolid-like fins and biserial sucker arrangement in the tentacles) may be due to paedomorphosis.


Subject(s)
Decapodiformes/classification , Phylogeny , Animals , Base Sequence , Bayes Theorem , Brazil , Computer Simulation
15.
Parasitol Res ; 119(3): 915-923, 2020 Mar.
Article in English | MEDLINE | ID: mdl-31970472

ABSTRACT

A new species and a new genus of a microsporidium Alternosema bostrichidis isolated from an adult Prostephanus truncatus in Mexico and from three species of the genus Dinoderus in Nigeria are described. The microsporidium is monomorphic, monoxenic, and develops in direct contact with host cell cytoplasm. The infection first appears with thoracic muscles, followed by a generalized invasion of the host. All developmental stages are diplokaryotic. Sporogony is disporoblastic. Mature spores are ovoid. Unfixed spores measure 3.7-4.2 × 2.0-2.6 µm, fixed and stained spores 3.5-5.0 × 2.4-2.8 µm. The polaroplast consists of dense lamellae and rare lamellae. The polar tube is slightly anisofilar, consisting of 11-17 coils, with 9-14 proximal (130 nm in diameter) and 2-3 distal coils (120 nm in diameter) arranged in one layer. Molecular phylogenetic analysis based upon a short portion of small-subunit ribosomal RNA gene (Genbank accession # KP455651) placed the new microsporidium within Liebermannia-Orthosomella lineage, which contains multiple undescribed parasites. In particular, A. bostrichidis showed maximal sequence similarity of 95% to Microsporidium sp. BBRE2 (# FJ755987) from Baikalian Diplacanthus brevispinus (Amphipoda: Acanthogammaridae) and Microsporidium sp. Comp CD Van 2 (# KC111784) from compost and soil in Canada. Frequent, devastating epizootics of laboratory cultures of A. bostrichidis support its potential as a biological control agent of grain borers.


Subject(s)
Amphipoda/microbiology , Biological Control Agents , Coleoptera/microbiology , Microsporidia, Unclassified/classification , Microsporidia, Unclassified/isolation & purification , Animals , Canada , Mexico , Microsporidia, Unclassified/genetics , Nigeria , Phylogeny , Prevalence , Spores, Fungal/classification
16.
Mycologia ; 112(1): 39-51, 2020.
Article in English | MEDLINE | ID: mdl-31825746

ABSTRACT

We report on the discovery and characterization of a novel Fusarium species that produced yellow-orange pseudoflowers on Xyris spp. (yellow-eyed grass; Xyridaceae) growing in the savannas of the Pakaraima Mountains of western Guyana. The petaloid fungal structures produced on infected plants mimic host flowers in gross morphology. Molecular phylogenetic analyses of full-length RPB1 (RNA polymerase largest subunit), RPB2 (RNA polymerase second largest subunit), and TEF1 (elongation factor 1-α) DNA sequences mined from genome sequences resolved the fungus, described herein as F. xyrophilum, sp. nov., as sister to F. pseudocircinatum within the African clade of the F. fujikuroi species complex. Results of a polymerase chain reaction (PCR) assay for mating type idiomorph revealed that single-conidial isolates of F. xyrophilum had only one of the MAT idiomorphs (MAT1-1 or MAT1-2), which suggests that the fungus may have a heterothallic sexual reproductive mode. BLASTn searches of whole-genome sequence of three strains of F. xyrophilum indicated that it has the genetic potential to produce secondary metabolites, including phytohormones, pigments, and mycotoxins. However, a polyketide-derived pigment, 8-O-methylbostrycoidin, was the only metabolite detected in cracked maize kernel cultures. When grown on carnation leaf agar, F. xyrophilum is phenotypically distinct from other described Fusarium species in that it produces aseptate microconidia on erect indeterminate synnemata that are up to 2 mm tall and it does not produce multiseptate macroconidia.


Subject(s)
Biological Mimicry , Flowers , Fusarium/classification , Poaceae/microbiology , DNA, Fungal/genetics , Fungal Proteins/genetics , Fusarium/cytology , Fusarium/genetics , Genes, Mating Type, Fungal/genetics , Genome, Fungal/genetics , Guyana , Phylogeny , Sequence Analysis, DNA , Spores, Fungal/classification , Spores, Fungal/cytology , Spores, Fungal/genetics
17.
Zootaxa ; 4609(3): zootaxa.4609.3.8, 2019 May 24.
Article in English | MEDLINE | ID: mdl-31717098

ABSTRACT

Mountain chains and rivers are often found to represent barriers promoting vicariant differentiation in terrestrial vertebrates. Previous studies have supported the idea that the Cordillera de Mérida (CM), the easternmost branch of the Northern Andes, represents a geographic barrier for vertebrates, including frogs. Previous studies have also suggested that the Orinoco River (OR), the biggest river in Venezuela, also represents a geographic barrier for terrestrial vertebrates. Boana pugnax and B. xerophylla are two Neotropical hylids, members of the B. faber species group, that are distributed on either side of the CM, and whose ranges extend up to 605 and 2450 m in elevation, respectively. In addition, B. xerophylla occurs on either side of the OR. Herein, we assess the genetic, acoustic, and morphological differentiation within B. pugnax and within B. xerophylla across the CM and within B. xerophylla across the OR, and test if genetic differentiation is correlated with geographic distance. We also evaluated the acoustic differentiation between the recently recognized B. xerophylla and its sister species, B. crepitans, and found marked differences between advertisement calls, corroborating their status as distinct species. Genetic and morphometric analyses of populations from opposite sides of the CM revealed differentiation in B. pugnax but not in B. xerophylla. Within the latter species, we found molecular, acoustic, and morphometric differentiation among samples of B. xerophylla from western Venezuela versus the Guiana Shield. Genetic variation within B. pugnax and within B. xerophylla was not explained by geographic distance. Thus, our data show conspecific population structure across the CM in B. pugnax, plus the possible existence of two species within what today is considered B. xerophylla, yet the CM apparently is not involved in this divergence. These results suggest that even for closely related species with shared ecology and distribution, genetic and phenotypic differentiation respond differently to common ecological or historical factors.


Subject(s)
Anura , Genetic Drift , Acoustics , Animals , DNA, Mitochondrial , Genetic Variation , Phylogeny , Phylogeography , Rivers , Venezuela
18.
Mycologia ; 110(6): 1205-1221, 2018.
Article in English | MEDLINE | ID: mdl-30513277

ABSTRACT

Morphological and molecular phylogenetic studies of true morels (Morchella) in North America, the Dominican Republic, Venezuela, Ecuador, and Peru led to the discovery of four undescribed species of Morchella. Two new species in the Elata clade, one from the Dominican Republic, initially distinguished by the informal designation Mel-18, and a newly discovered sister species from northern Arizona, are now recognized. Mel-18 is described as a novel phylogenetically distinct species, M. hispaniolensis. Its sister species from Arizona is described as M. kaibabensis, also recovered as an endophyte of Rocky Mountain juniper. Two additional species in the Esculenta clade, M. peruviana discovered in Peru and M. gracilis (previously reported as Mes-14) from the Dominican Republic, Venezuela, and Ecuador, are described as new. We also demonstrate that scanning electron microscopy (SEM) imaging of ascospores using rehydration/dehydration/critical point drying preparation techniques provides for enhanced resolution of spore wall surfaces, thereby increasing the number of morphological traits available to assess differences among otherwise closely related species.


Subject(s)
Ascomycota/classification , Phylogeny , Americas , Arizona , Ascomycota/isolation & purification , DNA, Fungal/genetics , DNA, Ribosomal/genetics , Ecuador , Microscopy, Electron, Scanning , Mycological Typing Techniques , Peru , Phenotype , Sequence Analysis, DNA , Spores, Fungal/ultrastructure , Venezuela
19.
Zootaxa ; 4461(3): 359-380, 2018 Aug 22.
Article in English | MEDLINE | ID: mdl-30314073

ABSTRACT

We describe a new species of Dendrobatidae from the eastern flank of the northern Central Cordillera in Colombia and assign it to the recently named genus Leucostethus. We also assess the phylogenetic status of the Colostethus fraterdanieli "complex" which according to our phylogenetic inference, is closely related to the new species. We use morphological, genetic and bioacoustic evidence to describe the new species and to expand the phylogeny of the genus Leucostethus. As a result, we transfer the content of C. fraterdanieli "complex" to Leucostethus. The new species differs from the Leucostethus fraterdanieli "complex" species by having white testes, straight pale ventrolateral stripes and high genetic divergence (17% in Cyt-b). According to our results, the genus Leucostethus is distributed in the western Amazonia from Ecuador and Peru, and both the northern Andes and Pacific lowlands in Colombia. We also found that L. fraterdanieli sensu stricto is restricted from mid (1600 m.a.s.l) to high (2500 m.a.s.l) elevation on the northern Central Cordillera in Antioquia. Extensive geographic sampling and more thorough morphological and bioacoustic examination need to be considered to solve the genetic clusters observed in the Leucostethus fraterdanieli "complex".


Subject(s)
Anura , Phylogeny , Animals , Colombia , Ecuador , Peru
20.
Zootaxa ; 4407(2): 151-190, 2018 Apr 10.
Article in English | MEDLINE | ID: mdl-29690191

ABSTRACT

An integrative taxonomy approach was implemented based on analysis of genetic, phylogenetic, morphological and ecological data to identify the cryptic diversity within the Phyllodactylus lanei complex. At least six species can be identified, of which four are currently considered subspecies: Phyllodactylus lanei, Phyllodactylus rupinus, Phyllodactylus isabelae, Phyllodactylus lupitae and two corresponding to undescribed taxa, which are identified and described in this contribution. These differ from other Mexican geckos in several characters: genetic distance (DNAmt), position in molecular phylogeny (concatened data DNAmt+DNAnu), species tree, morphological characters such as snout-vent length, longitudinal scales, tubercles from head to tail, interorbital scales, scales across venter, third labial-snout scales and rows of tubercles across dorsum; there are also differences in their bioclimatic profiles (temperature and precipitation) and geographical distribution. The most recent studies on taxonomy and evolution of Mexican geckos (Phyllodactylus) show that the diversity of this group of reptiles is currently underestimated, suggesting that more research and conservation efforts are should be addressed at these lizards.


Subject(s)
Lizards , Animals , Mexico , Phylogeny
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