Polymorphic microsatellite loci and partial mitogenome for the Chestnut-bellied Seed-finch Sporophila angolensis (Aves, Passeriformes) using next generation sequencing.

Brazil is one of the major contributors to international trade in wildlife and species of the bird genus Sporophila are currently under threat due to illegal trade. Microsatellite loci and mitochondrial DNA constitute important molecular markers for population genetics studies and parentage analyses, and hold great potential to help authorities manage illegal trafficking and control commercial breeders. We describe and characterize 19 polymorphic microsatellite loci and recover part of the mitochondrial genome for Sporophila angolensis using massive parallel sequencing with the Illumina platform. DNA sequencing resulted in a dataset with 2,379,295 paired reads, of which 392 were mapped to the mitogenome of S. maximiliani, resulting in a partial mitogenome of 16,785 bp for S. angolensis. The microsatellite search identified a total of 4737 loci, from which 27 primer pairs were tested on 24 individuals of unknown geographic origin. Nineteen of the 27 loci were successfully amplified and exhibited high levels of genetic variation, with a mean of 11.2 alleles per locus, a mean observed heterozygosity of 0.588 and a mean expected heterozygosity of 0.852. About half of the loci showed significant evidence for the presence of a null allele and significant deviation from Hardy-Weinberg equilibrium; the remaining eight loci had high paternity exclusion probabilities and low identity probabilities. The high levels of polymorphism for these loci, as well as their high paternity exclusion probability and low identity probability, indicate that they hold potential for parentage analyses and population genetics studies of S. angolensis.

Taxonomy, natural history, and conservation of the Great-billed Seed-Finch Sporophila maximiliani (Cabanis, 1851) (Thraupidae, Sporophilinae).

Seed-finches are small-sized Neotropical granivorous birds characterized by extremely strong and thick beaks. Among these birds, the Great-billed Seed-Finch Sporophila maximiliani has been selectively and intensively trapped to the extent that has become one of the most endangered bird species in South America, yet its taxonomy remains complex and controversial. Two subspecies have been recognized: S. m. maximiliani (Cabanis, 1851), mainly from the Cerrado of central South America, and S. m. parkesi Olson (= Oryzoborus m. magnirostris), from northeastern South America. Originally, S. m. parkesi was diagnosed as being larger than the Large-billed Seed-Finch, S. c. crassirostris (Gmelin, 1789), but proper comparisons with S. m. maximiliani, which is larger than S. c. crassirostris, were never performed. Here we provide a review of the taxonomic and nomenclatural history of S. maximiliani, reevaluate the validity and taxonomic status of the subspecies based on morphological characters, and significantly revise its geographic distribution. Analyses based on plumage patterns and a Principal Component Analysis of morphometric characters indicated that S. m. parkesi is most appropriately treated as a synonym of the nominate taxon, which results in a monotypic S. maximiliani comprising two disjunct populations. Further, we conducted systematic searches for S. maximiliani in Brazil, in an attempt to obtain natural history information. After more than 6,000 hours of fieldwork in 45 areas of potential and historical occurrence, S. maximiliani was located only in two sites, in marshy environments called veredas, confirming the critical conservation status of this species, at least in Brazil. We discuss the conservation potential for, and the problems involved with, captive breeding of S. maximiliani for reintroduction into the wild.

Isolation and characterization of microsatellite markers for conservation management of the endangered Great-billed Seed-finch, Sporophila maximiliani (Aves, Passeriformes), and cross-amplification in other congeners.

The Great-billed Seed-finch, Sporophila maximiliani, is a threatened neotropical bird that has declined mainly due to illegal trapping, with very few records in the wild in the last two decades. Despite the existence of a considerable captive population that could be used for reintroductions into the wild, many individuals are known to be hybrids either with other species or subspecies of the genus. Forensic investigations are urgently needed to distinguish between birds born in captivity from those from illegal trade. Microsatellites can be useful tools to assess individual admixture levels and to perform parentage tests that may confirm the origin of animals, but only a few loci are available for this group of birds. Here, we provide a set of 14 microsatellite loci isolated from the S. maximiliani, many of which also amplified and were polymorphic in the Pearly-bellied Seedeater, S. pileata, and in the Copper Seedeater, S. bouvreuil. In ten loci selected for the S. maximiliani, the number of alleles per locus varied from four to nine and observed and expected heterozygosities ranged from 0.13 to 1 and 0.56 to 0.83, respectively. These loci proved to be highly informative for forensic analyses, indicating that they may be useful for conservation management plans in these endangered tropical birds.

Mortality by filarial nematodes in passeriformes of species Oryzoborus maximiliani in Brazil

Descreve-se a ocorrência de filariose em passeriformes da espécie Oryzoborus maximiliani (bicudo) mantidos em cativeiro. Os sinais clínicos incluiram insuficiência respiratória e prostração, evoluindo para decúbito lateral e morte. Todos os indivíduos capturados adoeceram e morreram em poucos dias. As lesões mais significativas foram encontradas nos pulmões, que estavam acinzentados na região adjacente ao saco aéreo abdominal. Impressões do pulmão observadas ao microscópio em 100 aumentos permitiram a visualização de grande número de formas alongadas típicas de nematódeo. Considerando suas dimensões e os relatos da literatura consultada, especulou-se a possibilidade de filariose. As condições de estresse de captura e cativeiro podem ser determinantes do quadro agudo observado, o que permite sugerir esta suspeita em casos semelhantes. Considera-se importante, entretanto, a possibilidade de a manifestação clínica na forma crônica ou assintomática poder ser mais comum que a aguda.