Genome-Wide Analyses Reveal the Genetic Architecture and Candidate Genes of Indicine, Taurine, Synthetic Crossbreds, and Locally Adapted Cattle in Brazil.

Cattle population history, breeding systems, and geographic subdivision may be reflected in runs of homozygosity (ROH), effective population size (N e), and linkage disequilibrium (LD) patterns. Thus, the assessment of this information has become essential to the implementation of genomic selection on purebred and crossbred cattle breeding programs. In this way, we assessed the genotype of 19 cattle breeds raised in Brazil belonging to taurine, indicine, synthetic crossbreds, and Iberian-derived locally adapted ancestries to evaluate the overall LD decay patterns, N e, ROH, and breed composition. We were able to obtain a general overview of the genomic architecture of cattle breeds currently raised in Brazil and other tropical countries. We found that, among the evaluated breeds, different marker densities should be used to improve the genomic prediction accuracy and power of genome-wide association studies. Breeds showing low N e values indicate a recent inbreeding, also reflected by the occurrence of longer ROH, which demand special attention in the matting schemes to avoid extensive inbreeding. Candidate genes (e.g., ABCA7, PENK, SPP1, IFNAR1, IFNAR2, SPEF2, PRLR, LRRTM1, and LRRTM4) located in the identified ROH islands were evaluated, highlighting biological processes involved with milk production, behavior, rusticity, and fertility. Furthermore, we were successful in obtaining the breed composition regarding the taurine and indicine composition using single-nucleotide polymorphism (SNP) data. Our results were able to observe in detail the genomic backgrounds that are present in each breed and allowed to better understand the various contributions of ancestor breeds to the modern breed composition to the Brazilian cattle.

Potato genotypes reaction to early blight and late blight in organic cultivation / Reação de genótipos de batata à pinta preta e requeima em cultivo orgânico

Disease management in conventional potato crops requires the use of larger amounts of phytosanitary products and increased toxicity with regard to organic cultivation which may pose a risk to human health and have a negative impact on the environment as well. The present study aimed to evaluate the yield and the reaction of potato genotypes to both late blight and to early blight under an organic system of cultivation. Eperiments were conducted in the field in the municipalities of Lages, SC and Quilombo, SC, south Brazil, during the crops of 2012/2013 and 2013/2014. The experimental design consisted of a randomized complete block design with 4 replications; The following eight local clones from the Santa Catarina mountain range (serra) were evaluated: SJ01273-1; SJ01251-1; SJ01213-1; SMSJ07344-54; SJ04510-1; SJ05621-11; SJ02411-5; and SJ04521-3; and 8 commercial cultivars were assessed as follows: Agate, Asterix, and Monalisa of Dutch origin; Panda of German origin; and BRS Ana, BRS Eliza, Cota, and Catucha of Brazilian origin. Incidence and severity of late blight and early bright and the weight and number of tubers produced were evaluated. Potato genotypes showed variability in terms of tuber production and disease resistance. The regional clone 15 and cultivars BRS Ana and Cota presented resistance to early blight and to late blight in both cultivated sites. Genotype 35 and cvs. Asterix and BRS Ana were the ones that had the largest productions. Genotype 35 was the most productive one among all genotypes/clones evaluated (16,926.81kg ha-1). There was variability between different local potato genotypes in terms of productivity potential and resistance to diseases under the organic system of cultivation. These findings showed that there is a source of resistance to genetic improvement programs.(AU)

O manejo de doenças nos cultivos convencionais de batata requer emprego de maior quantidade de produtos fitossanitários e de maior toxicidade em relação ao cultivo orgânico, que pode acarretar riscos a saúde humana e impacto ambiental. Este trabalho teve como objetivo avaliar o rendimento e a reação de genótipos de batata à requeima e à pinta preta sob sistema orgânico de cultivo. Os experimentos foram conduzidos a campo nas safras 2012/2013 e 2013/2014 em Lages/SC e em Quilombo/SC. O delineamento experimental foi de blocos ao acaso com quatro repetições. Avaliou-se oito clones locais oriundas da serra catarinense: SJ01273-1; SJ01251-1; SJ01213-1; SMSJ07344-54; SJ04510-1; SJ05621-11; SJ02411-5; SJ04521-3 e oito cultivares comerciais: Ágata, Asterix e Monalisa de origem holandesa; Panda de origem alemã e BRS Ana, BRS Eliza, Cota e Catucha de origem brasileira. Foram realizadas avaliações de incidência e severidade da requeima e pinta preta e do peso e número de tubérculos produzidos. Os genótipos de batata apresentaram variabilidade na produção de tubérculos e de resistência a doenças. O clone regional 15 e as cultivares BRS Ana e Cota apresentaram resistência à pinta preta e a requeima, em ambos os locais cultivados. O genótipo 35 e as cvs. Asterix e BRS Ana apresentaram as maiores produções. O genótipo 35 foi o mais produtivo (16.926,81kg ha-1). Genótipos locais de batata apresentam variabilidade quanto ao potencial produtivo e resistência a doenças sob o sistema orgânico de cultivo, evidenciando fonte de resistência a programas de melhoramento genético.(AU)

Potato genotypes reaction to early blight and late blight in organic cultivation / Reação de genótipos de batata à pinta preta e requeima em cultivo orgânico

ABSTRACT: Disease management in conventional potato crops requires the use of larger amounts of phytosanitary products and increased toxicity with regard to organic cultivation which may pose a risk to human health and have a negative impact on the environment as well. The present study aimed to evaluate the yield and the reaction of potato genotypes to both late blight and to early blight under an organic system of cultivation. Eperiments were conducted in the field in the municipalities of Lages, SC and Quilombo, SC, south Brazil, during the crops of 2012/2013 and 2013/2014. The experimental design consisted of a randomized complete block design with 4 replications; The following eight local clones from the Santa Catarina mountain range (serra) were evaluated: SJ01273-1; SJ01251-1; SJ01213-1; SMSJ07344-54; SJ04510-1; SJ05621-11; SJ02411-5; and SJ04521-3; and 8 commercial cultivars were assessed as follows: Agate, Asterix, and Monalisa of Dutch origin; Panda of German origin; and BRS Ana, BRS Eliza, Cota, and Catucha of Brazilian origin. Incidence and severity of late blight and early bright and the weight and number of tubers produced were evaluated. Potato genotypes showed variability in terms of tuber production and disease resistance. The regional clone 15 and cultivars BRS Ana and Cota presented resistance to early blight and to late blight in both cultivated sites. Genotype 35 and cvs. Asterix and BRS Ana were the ones that had the largest productions. Genotype 35 was the most productive one among all genotypes/clones evaluated (16,926.81kg ha-1). There was variability between different local potato genotypes in terms of productivity potential and resistance to diseases under the organic system of cultivation. These findings showed that there is a source of resistance to genetic improvement programs.

RESUMO: O manejo de doenças nos cultivos convencionais de batata requer emprego de maior quantidade de produtos fitossanitários e de maior toxicidade em relação ao cultivo orgânico, que pode acarretar riscos a saúde humana e impacto ambiental. Este trabalho teve como objetivo avaliar o rendimento e a reação de genótipos de batata à requeima e à pinta preta sob sistema orgânico de cultivo. Os experimentos foram conduzidos a campo nas safras 2012/2013 e 2013/2014 em Lages/SC e em Quilombo/SC. O delineamento experimental foi de blocos ao acaso com quatro repetições. Avaliou-se oito clones locais oriundas da serra catarinense: SJ01273-1; SJ01251-1; SJ01213-1; SMSJ07344-54; SJ04510-1; SJ05621-11; SJ02411-5; SJ04521-3 e oito cultivares comerciais: Ágata, Asterix e Monalisa de origem holandesa; Panda de origem alemã e BRS Ana, BRS Eliza, Cota e Catucha de origem brasileira. Foram realizadas avaliações de incidência e severidade da requeima e pinta preta e do peso e número de tubérculos produzidos. Os genótipos de batata apresentaram variabilidade na produção de tubérculos e de resistência a doenças. O clone regional 15 e as cultivares BRS Ana e Cota apresentaram resistência à pinta preta e a requeima, em ambos os locais cultivados. O genótipo 35 e as cvs. Asterix e BRS Ana apresentaram as maiores produções. O genótipo 35 foi o mais produtivo (16.926,81kg ha-1). Genótipos locais de batata apresentam variabilidade quanto ao potencial produtivo e resistência a doenças sob o sistema orgânico de cultivo, evidenciando fonte de resistência a programas de melhoramento genético.

Serological study of the Leptospira spp. infection in sheep and goats slaughtered in the State of Paraíba, semiarid of Northeastern Brazil / Estudo sorológico da infecção por Leptospira spp. em caprinos e ovinos abatidos no Estado da Paraíba, semiárido do Nordeste, Brasil

The aim of this survey was to determine the frequency of anti-Leptospira spp. antibodies in goats and sheep slaughtered in different slaughterhouses in the State of Paraiba, in the semi-arid region of Northeastern Brazil. Blood samples were collected from 500 goats and 500 sheep randomly selected. To verify the presence of anti-Leptospira spp. antibodies the microscopic agglutination test (MAT), using 24 serovars as antigens, was used. From the 1,000 animals analyzed, 82 (8.2%; 95% CI = 7.0%-10.5%) were sero-reactive being 26/500 (5.2%; 95% CI = 3.5%-7.5%) in goats and 56/500 (11.2%; 95% CI = 8.7%-14.2%) in sheep. The most frequent serovars were Hardjobovis (14.6%) and Autumnalis (13.4%). In goats, the most frequent serovar was the Hardjobovis, and in sheep the Ballum, with frequencies of 19.2% and 17.9%, respectively. There was a significant difference in the frequency of positive animals among slaughterhouses, both for goats (p = 0.035) and for sheep (p = 0.004), with the county of Alhandra presenting the highest frequency of seropositive animals for both species. It is concluded that sheep and goats from the semiarid region of the Northeastern Brazil may have become adapted to the serovars Hardjobovis e Autumnalis, as well as wild rodents may be involved in the transmission of the disease. It is possible that the climatic conditions influenced in the transmissibility of the leptospirosis, especially in the Mata Paraibana mesoregion, however it was not considered as being sufficient to justify the low frequency of seropositive animals. In this way, it is possible to suggest the hypothesis that the rusticity of the small ruminants in the studied region contributed to the low sero-reactivity verified.(AU)

O objetivo deste estudo foi determinar a frequência de anticorpos anti-Leptospira spp. em caprinos e ovinos abatidos em diferentes matadouros no Estado da Paraíba, região semiárida do Nordeste brasileiro. Foi coletado sangue de 500 caprinos e 500 ovinos aleatoriamente selecionados. Para verificar a presença de anticorpos anti-Leptospira spp. empregou-se o teste soroaglutinação microscópica (SAM), utilizando-se 24 sorovares como antígenos. Dos 1.000 animais analisados 82 (8,2%; IC 95%= 7,0%-10,5%) foram sororreagentes, sendo 26/500 (5,2%; IC 95% =3,5%-7,5%) em caprinos e 56/500 (11,2%; IC 95% 8,7%-14,2%) em ovinos. Os sorovares mais frequentes foram Hardjobovis (14,6%) e Autumnalis (13,4%). Na espécie caprina, o sorovar mais frequente foi o Hardjobovis, e na espécie ovina o Ballum, com frequências de 19,2% e 17,9%, respectivamente. Houve diferença significativa na frequência de positivos entre os matadouros, tanto para caprinos (p = 0,035) quanto para ovinos (p = 0,004), com o município de Alhandra apresentando a maior frequência de soropositivos para ambas as espécies. Concluiu-se que ovinos e caprinos da região semiárida do Nordeste podem estar adaptados aos sorovares Hardjobovis e Autumnalis, bem como roedores silvestres estarem envolvidos na transmissão do agente. Possivelmente as condições climáticas influenciaram a transmissibilidade da leptospirose, especialmente na mesorregião da Mata Paraibana, entretanto isso não foi considerado suficiente para justificar a baixa frequência de animais soropositivos. Deste modo, é possível sugerir a hipótese de que a rusticidade dos pequenos ruminantes na região estudada contribui para a baixa sororreatividade verificada.(AU)

Serological study of the Leptospira spp. infection in sheep and goats slaughtered in the State of Paraíba, semiarid of Northeastern Brazil / Estudo sorológico da infecção por Leptospira spp. em caprinos e ovinos abatidos no Estado da Paraíba, semiárido do Nordeste, Brasil

The aim of this survey was to determine the frequency of anti-Leptospira spp. antibodies in goats and sheep slaughtered in different slaughterhouses in the State of Paraiba, in the semi-arid region of Northeastern Brazil. Blood samples were collected from 500 goats and 500 sheep randomly selected. To verify the presence of anti-Leptospira spp. antibodies the microscopic agglutination test (MAT), using 24 serovars as antigens, was used. From the 1,000 animals analyzed, 82 (8.2%; 95% CI = 7.0%-10.5%) were sero-reactive being 26/500 (5.2%; 95% CI = 3.5%-7.5%) in goats and 56/500 (11.2%; 95% CI = 8.7%-14.2%) in sheep. The most frequent serovars were Hardjobovis (14.6%) and Autumnalis (13.4%). In goats, the most frequent serovar was the Hardjobovis, and in sheep the Ballum, with frequencies of 19.2% and 17.9%, respectively. There was a significant difference in the frequency of positive animals among slaughterhouses, both for goats (p = 0.035) and for sheep (p = 0.004), with the county of Alhandra presenting the highest frequency of seropositive animals for both species. It is concluded that sheep and goats from the semiarid region of the Northeastern Brazil may have become adapted to the serovars Hardjobovis e Autumnalis, as well as wild rodents may be involved in the transmission of the disease. It is possible that the climatic conditions influenced in the transmissibility of the leptospirosis, especially in the Mata Paraibana mesoregion, however it was not considered as being sufficient to justify the low frequency of seropositive animals. In this way, it is possible to suggest the hypothesis that the rusticity of the small ruminants in the studied region contributed to the low sero-reactivity verified.

O objetivo deste estudo foi determinar a frequência de anticorpos anti-Leptospira spp. em caprinos e ovinos abatidos em diferentes matadouros no Estado da Paraíba, região semiárida do Nordeste brasileiro. Foi coletado sangue de 500 caprinos e 500 ovinos aleatoriamente selecionados. Para verificar a presença de anticorpos anti-Leptospira spp. empregou-se o teste soroaglutinação microscópica (SAM), utilizando-se 24 sorovares como antígenos. Dos 1.000 animais analisados 82 (8,2%; IC 95%= 7,0%-10,5%) foram sororreagentes, sendo 26/500 (5,2%; IC 95% =3,5%-7,5%) em caprinos e 56/500 (11,2%; IC 95% 8,7%-14,2%) em ovinos. Os sorovares mais frequentes foram Hardjobovis (14,6%) e Autumnalis (13,4%). Na espécie caprina, o sorovar mais frequente foi o Hardjobovis, e na espécie ovina o Ballum, com frequências de 19,2% e 17,9%, respectivamente. Houve diferença significativa na frequência de positivos entre os matadouros, tanto para caprinos (p = 0,035) quanto para ovinos (p = 0,004), com o município de Alhandra apresentando a maior frequência de soropositivos para ambas as espécies. Concluiu-se que ovinos e caprinos da região semiárida do Nordeste podem estar adaptados aos sorovares Hardjobovis e Autumnalis, bem como roedores silvestres estarem envolvidos na transmissão do agente. Possivelmente as condições climáticas influenciaram a transmissibilidade da leptospirose, especialmente na mesorregião da Mata Paraibana, entretanto isso não foi considerado suficiente para justificar a baixa frequência de animais soropositivos. Deste modo, é possível sugerir a hipótese de que a rusticidade dos pequenos ruminantes na região estudada contribui para a baixa sororreatividade verificada.