Geographical and ecological factors affect microplastic body burden in marine fish at global scale.

Microplastic (MP) contamination has been identified as a worrisome environmental issue at the global level. Fish are the taxonomic group more extensively investigated to assess MP contamination in marine environment. A large variability in MP bioaccumulation (i.e., body burden) was reported in fish but to date there is a dearth of information concerning the drivers underlying this process. The present systematic review aimed at summarizing the results of the scientific literature on MP body burden in the digestive tract of marine fish to quantitatively shed light on the contribution of different geographical (i.e., latitudinal origin of the sample, distance from the coastline and field- or marked-collected) and ecological (i.e., trophic strategy, milieu, and body size) factors driving bioaccumulation. The mean (±SE) MPs/individual was 4.13 ± 2.87, and the mean MPs/ww (i.e., MPs/g) was 5.92 ± 0.94. Overall, MP abundance expressed as MPs/individual of fish from tropical areas was significantly higher compared to the other latitudinal bands, with species sampled close to the coastline that accumulated a larger number of MPs compared to those collected offshore. Neither the trophic strategy, nor the milieu and the market or field origin of fish explained the MP body burden. However, fish body size resulted as a determinant of MP body burden (as MPs/individual), with small fish accumulating a lower amount of MPs compared to larger ones. Qualitatively, but not statistically significant, similar results were generally obtained for MPs/ww, except for an opposite, and significant, variation according to species body size. Our findings showed that geographical, rather than ecological factors represent the main drivers of MP body burden in marine fish, suggesting that environmental variables and/or local pollution sources mainly contribute to explaining the large variability underlying the ingestion and bioaccumulation processes of these contaminants.

Physiological versatility of ANME-1 and Bathyarchaeotoa-8 archaea evidenced by inverse stable isotope labeling.

BACKGROUND: The trophic strategy is one key principle to categorize microbial lifestyles, by broadly classifying microorganisms based on the combination of their preferred carbon sources, electron sources, and electron sinks. Recently, a novel trophic strategy, i.e., chemoorganoautotrophy-the utilization of organic carbon as energy source but inorganic carbon as sole carbon source-has been specifically proposed for anaerobic methane oxidizing archaea (ANME-1) and Bathyarchaeota subgroup 8 (Bathy-8). RESULTS: To further explore chemoorganoautotrophy, we employed stable isotope probing (SIP) of nucleic acids (rRNA or DNA) using unlabeled organic carbon and 13C-labeled dissolved inorganic carbon (DIC), i.e., inverse stable isotope labeling, in combination with metagenomics. We found that ANME-1 archaea actively incorporated 13C-DIC into RNA in the presence of methane and lepidocrocite when sulfate was absent, but assimilated organic carbon when cellulose was added to incubations without methane additions. Bathy-8 archaea assimilated 13C-DIC when lignin was amended; however, their DNA was derived from both inorganic and organic carbon sources rather than from inorganic carbon alone. Based on SIP results and supported by metagenomics, carbon transfer between catabolic and anabolic branches of metabolism is possible in these archaeal groups, indicating their anabolic versatility. CONCLUSION: We provide evidence for the incorporation of the mixed organic and inorganic carbon by ANME-1 and Bathy-8 archaea in the environment. Video Abstract.

Mesophotic corals in Hawai'i maintain autotrophy to survive low-light conditions.

In mesophotic coral ecosystems, reef-building corals and their photosynthetic symbionts can survive with less than 1% of surface irradiance. How depth-specialist corals rely upon autotrophically and heterotrophically derived energy sources across the mesophotic zone remains unclear. We analysed the stable carbon (δ13C) and nitrogen (δ15N) isotope values of a Leptoseris community from the 'Au'au Channel, Maui, Hawai'i (65-125 m) including four coral host species living symbiotically with three algal haplotypes. We characterized the isotope values of hosts and symbionts across species and depth to compare trophic strategies. Symbiont δ13C was consistently 0.5‰ higher than host δ13C at all depths. Mean colony host and symbiont δ15N differed by up to 3.7‰ at shallow depths and converged at deeper depths. These results suggest that both heterotrophy and autotrophy remained integral to colony survival across depth. The increasing similarity between host and symbiont δ15N at deeper depths suggests that nitrogen is more efficiently shared between mesophotic coral hosts and their algal symbionts to sustain autotrophy. Isotopic trends across depth did not generally vary by host species or algal haplotype, suggesting that photosynthesis remains essential to Leptoseris survival and growth despite low light availability in the mesophotic zone.

Uncovering hidden structures: previously undescribed pseudopodia and ectoplasmic structures in planktonic foraminifera.

The trophic strategies of cold-water planktonic foraminifera are not well understood due to the challenge of culturing them in polar conditions. Here, we identify previously unknown ectoplasmic and cytoplasmic projections in three species of planktonic foraminifera thriving in polar and subpolar marine environments: Globigerina bulloides, Neogloboquadrina incompta and Neogloboquadrina pachyderma. These structures were observed during routine monitoring of cultured specimens sampled from the Norwegian coast, Greenland Sea and Baffin Bay. Two types of projections were discovered, including permanent and non-permanent structures such as ectoplasmic roots, twigs and twig-like projections, similar to those observed in benthic taxa Cibicides and Cibicidoides. Additionally, a previously undescribed filopodia-like projection was observed in N. pachyderma. We discuss the function, the ecological significance and the potential impact on pelagic processes of the presence of these structures in foraminifera species that occupy diverse niches in the water column. Our findings suggest that these structures may play an important role in the trophic strategies of cold-water planktonic foraminifera, and further research and observations are necessary to fully comprehend their significance in the carbon cycle.

Rare and Hungry: Feeding Ecology of the Golden Alpine Salamander, an Endangered Amphibian in the Alps.

Amphibians are considered critical species in the nutrient flow within and across ecosystems, and knowledge on their trophic ecology and niches is crucial for their conservation. For the first time we studied the trophic ecology of the rare and endemic Salamandra atra aurorae in a mixed temperate forest in northern Italy. We aimed to define the realized trophic niche, investigate the prey selectivity and explore possible levels of individual specialization. In summer 2022 we obtained stomach contents from 53 salamanders by stomach flushing and prey availability using pitfall traps. We used the Costello graphical method to analyse the realized trophic niche, and the relativized electivity index to study prey selectivity. Our results show that the Golden Alpine salamander adopts a generalist feeding strategy with positive selection of few prey categories (e.g., Myriapoda, Hymenoptera except Formicidae). Food preference seems to be driven by size, movement ability and chitinization of the prey. A high degree of inter-individual diet variation, modularity and clustering was found, describing a scenario that can be framed in a Distinct Preference model framework. This study gives new insights on the trophic ecology of the Alpine salamander complex, whose subspecies appear to adopt similar feeding strategies.

Organic and inorganic nutrients modulate taxonomic diversity and trophic strategies of small eukaryotes in oligotrophic oceans.

As the oligotrophic gyres expand due to global warming, exacerbating resource limitation impacts on primary producers, predicting changes to microbial assemblages and productivity requires knowledge of the community response to nutrient availability. This study examines how organic and inorganic nutrients influence the taxonomic and trophic composition (18S metabarcoding) of small eukaryotic plankton communities (< 200 µm) within the euphotic zone of the oligotrophic Sargasso Sea. The study was conducted by means of field sampling of natural microbial communities and laboratory incubation of these communities under different nutrient regimes. Dissimilarity in community composition increased along a depth gradient, with a homogeneous protist community within the mixed layer and distinct microbial assemblages at different depths below the deep chlorophyll maximum. A nutrient enrichment assay revealed the potential of natural microbial communities to rapidly shift in composition in response to nutrient addition. Results highlighted the importance of inorganic phosphorus availability, largely understudied compared to nitrogen, in constraining microbial diversity. Dissolved organic matter addition led to a loss of diversity, benefiting a limited number of phagotrophic and mixotrophic taxa. Nutrient history of the community sets the physiological responsiveness of the eukaryotic community to changing nutrient regimes and needs to be considered in future studies.

The skeleton of Balanophyllia coral species suggests adaptive traits linked to the onset of mixotrophy.

The diversity in the skeletal features of coral species is an outcome of their evolution, distribution and habitat. Here, we explored, from macro- to nano-scale, the skeletal structural and compositional characteristics of three coral species belonging to the genus Balanophyllia having different trophic strategies. The goal is to address whether the onset of mixotrophy influenced the skeletal features of B. elegans, B. regia, and B. europaea. The macroscale data suggest that the presence of symbiotic algae in B. europaea can lead to a surplus of energy input that increases its growth rate and skeletal bulk density, leading to larger and denser corals compared to the azooxanthellate ones, B. regia and B. elegans. The symbiosis would also explain the higher intra-skeletal organic matrix (OM) content, which is constituted by macromolecules promoting the calcification, in B. europaea compared to the azooxanthellate species. The characterization of the soluble OM also revealed differences between B. europaea and the azooxanthellate species, which may be linked to diverse macromolecular machineries responsible for skeletal biosynthesis and final morphology. Differently, the crystallographic features were homogenous among species, suggesting that the basic building blocks of skeletons remained a conserved trait in these related species, regardless of the trophic strategy. These results show changes in skeletal phenotype that could be triggered by the onset of mixotrophy, as a consequence of the symbiotic association, displaying remarkable plasticity of coral skeletons which repeatedly allowed this coral group to adapt to a range of changing environments throughout its geological history.

Brood Parasites Are a Heterogeneous and Functionally Distinct Class of Natural Enemies.

Brood parasitism is the introduction of unrelated progeny into the nest or colony of a host that then raises the foreign young. This reproductive strategy has evolved independently and repeatedly among diverse animal taxa, and brood parasite-host interactions have become models for understanding coevolutionary arms races. Yet brood parasites have remained largely overlooked in previous syntheses of natural enemy ecology. Here, we argue that brood parasites are a heterogeneous and versatile class of natural enemies, blending traits characteristic of predators and trophic parasites. The functional distinctness of brood parasites reinforces the idea that natural enemies exist along a continuum rather than as a dichotomy. Brood parasite-host interactions can serve as valuable case studies to unify parasite-host and predator-prey theories.

Inferring trophic conditions in managed aquifer recharge systems from metagenomic data.

Humans are increasingly dependent on engineered landscapes to minimize negative health impacts of water consumption. Managed aquifer recharge (MAR) systems, such as river and lake bank filtration, surface spreading or direct injection into the aquifer have been used for decades for water treatment and storage. Microbial and sorptive processes in these systems are effective for the attenuation of many emerging contaminants including trace organic chemicals such as pharmaceuticals and personal care products. Recent studies showed a superior efficiency of trace organic chemical biotransformation by incumbent communities of microorganisms under oxic and carbon-limited (oligotrophic) conditions. This study sought to identify features of bacterial genomes that are predictive of trophic strategy in this water management context. Samples from a pilot scale managed aquifer recharge system with regions of high and low carbon concentration, were used to generate a culture collection from which oligotrophic and copiotrophic bacteria were categorized. Genomic markers linked to either trophic strategy were used to develop a Bayesian network model that can infer prevailing carbon conditions in MAR systems from metagenomic data.

Body Size, Light Intensity, and Nutrient Supply Determine Plankton Stoichiometry in Mixotrophic Plankton Food Webs.

Trophic strategy determines stoichiometry of plankton. In general, heterotrophic zooplankton have lower and more stable C∶N and C∶P ratios than photoautotrophic phytoplankton, whereas mixotrophic protists, which consume prey and photosynthesize, have stoichiometry between zooplankton and phytoplankton. As trophic strategies change with cell size, body size may be a key trait influencing eukaryotic plankton stoichiometry. However, the relationship between body size and stoichiometry remains unclear. Here we measured plankton size-fractionated C∶N ratios under different intensities of light and nutrient supply in subtropical freshwater and marine systems. We found a unimodal body size-C∶N ratio pattern, with a maximum C∶N ratio at ∼50 µm diameter in marine and freshwater systems. Moreover, the variation in C∶N ratios is explained mainly by body size, followed by light intensity and nutrient concentration. To investigate the mechanisms behind this unimodal pattern, we constructed a size-based plankton food web model in which the trophic strategy and C∶N ratio are an emerging result. Our model simulations reproduce the unimodal pattern with a C∶N ratio of photoautotrophs ≤50 µm increasing with body size due to increase of photosynthetic carbon, whereas C∶N ratios of organisms >50 µm decrease with size due to decreasing photoautotrophic but increasing heterotrophic uptake. Based on our field observations and simulation, we extend the classic "light-nutrient" theory that determines plankton C∶N ratio to include body size and trophic strategy dependency. We conclude that body size and size-dependent uptake of resources (light, nutrients, and prey) determine plankton stoichiometry at various light and nutrient supplies.

Metabarcoding Insights Into the Trophic Behavior and Identity of Intertidal Benthic Foraminifera.

Foraminifera are ubiquitous marine protists with an important role in the benthic carbon cycle. However, morphological observations often fail to resolve their exact taxonomic placement and there is a lack of field studies on their particular trophic preferences. Here, we propose the application of metabarcoding as a tool for the elucidation of the in situ feeding behavior of benthic foraminifera, while also allowing the correct taxonomic assignment of the feeder, using the V9 region of the 18S (small subunit; SSU) rRNA gene. Living foraminiferal specimens were collected from two intertidal mudflats of the Wadden Sea and DNA was extracted from foraminiferal individuals and from the surrounding sediments. Molecular analysis allowed us to confirm that our foraminiferal specimens belong to three genetic types: Ammonia sp. T6, Elphidium sp. S5 and Haynesina sp. S16. Foraminiferal intracellular eukaryote communities reflected to an extent those of the surrounding sediments but at different relative abundances. Unlike sediment eukaryote communities, which were largely determined by the sampling site, foraminiferal intracellular eukaryote communities were driven by foraminiferal species, followed by sediment depth. Our data suggests that Ammonia sp. T6 can predate on metazoan classes, whereas Elphidium sp. S5 and Haynesina sp. S16 are more likely to ingest diatoms. These observations, alongside the use of metabarcoding in similar ecological studies, significantly contribute to our overall understanding of the ecological roles of these protists in intertidal benthic environments and their position and function in the benthic food webs.

Trophic strategy of diverse methanogens across a river-to-sea gradient.

Methanogens are an important biogenic source of methane, especially in estuarine waters across a river-to-sea gradient. However, the diversity and trophic strategy of methanogens in this gradient are not clear. In this study, the diversity and trophic strategy of methanogens in sediments across the Yellow River (YR) to the Bohai Sea (BS) gradient were investigated by high-throughput sequencing based on the 16S rRNA gene. The results showed that the diversity of methanogens in sediments varied from multitrophic communities in YR samples to specific methylotrophic communities in BS samples. The methanogenic community in YR samples was dominated by Methanosarcina, while that of BS samples was dominated by methylotrophic Methanococcoides. The distinct methanogens suggested that the methanogenic community of BS sediments did not originate from YR sediment input. High-throughput sequencing of the mcrA gene revealed that active Methanococcoides dominated in the BS enrichment cultures with trimethylamine as the substrate, and methylotrophic Methanolobus dominated in the YR enrichment cultures, as detected to a limited amount in in situ sediment samples. Methanosarcina were also detected in this gradient sample. Furthermore, the same species of Methanosarcina mazei, which was widely distributed, was isolated from the area across a river-to-sea gradient by the culture-dependent method. In summary, our results showed that a distribution of diverse methanogens across a river-to-sea gradient may shed light on adaption strategies and survival mechanisms in methanogens.

Effects of light-dark cycle on the spatial distribution and feeding activity of fish larvae of two co-occurring species (Pisces: Hypophthalmidae and Sciaenidae) in a Neotropical floodplain lake / Efeitos do ciclo claro-escuro na distribuição espacial e na atividade alimentar de larvas de peixes de duas espécies coexistentes (Pisces: Hypophthalmidae e Sciaenidae) em uma lagoa de planície de inundação Neotropical

Abstract Most studies on mechanisms regulating fish larvae processes have focused on assessing the isolated effects of food distribution and feeding behavior. However, in natural ecosystems, fish larvae may strongly interact with zooplankton organisms in an array of complex, direct and indirect interdependencies. This study analyzed the spatial distribution, diet and feeding behavior of early stages of Hypophthalmus edentatus and Plagioscion squamosissimus, two fish species co-occurring in an isolated floodplain lake, during the light-dark cycle. Larvae fed more actively during dark periods (dusk and night) when they migrated toward the surface of the lake, and remained on the bottom and fed less during light periods (day and dawn). Cladocerans represented the most frequent prey in the diet of H. edentatus larvae. In turn, P. squamosissimus larvae initially preferred cladocerans and, as they developed, included calanoid copepods in the diet. Significant differences were detected in the frequencies of food items consumed during larval development, which could be related to a better ability of the most developed stages to explore the environment in search of other prey.

Resumo A maioria dos estudos de mecanismos que regulam os processos de larvas de peixes se concentra na avaliação dos efeitos isolados da distribuição do alimento e do comportamento alimentar. No entanto, em ecossistemas naturais, as larvas de peixes podem interagir fortemente com os organismos do zooplâncton em uma série de interdependências complexas, diretas e indiretas. Este estudo analisou a distribuição espacial, dieta e comportamento alimentar dos estágios iniciais de vida de Hypophthalmus edentatus e Plagioscion squamosissimus, duas espécies de peixes coexistentes em uma lagoa isolada de planície de inundação, durante o ciclo claro-escuro. As larvas se alimentaram mais ativamente durante os períodos escuros (crepúsculo e noite) quando ascenderam em direção à superfície da lagoa, enquanto durante os períodos luminosos (dia e amanhecer) permaneceram no fundo e pouco se alimentaram. Os cladóceros foram as presas mais frequentes na dieta de larvas de H. edentatus. Por sua vez, larvas de P. squamosissimus inicialmente preferiram cladóceros, e a medida que se desenvolveram incluíram copépodes calanóides na dieta. Diferenças significativas foram detectadas nas frequências dos itens alimentares consumidos durante o desenvolvimento larval, o que poderia estar relacionado a uma melhor capacidade dos estágios mais desenvolvidos em explorar o ambiente na busca por outras presas.

Shifts in microbial trophic strategy explain different temperature sensitivity of CO2 flux under constant and diurnally varying temperature regimes.

Understanding soil CO2 flux temperature sensitivity (Q10) is critical for predicting ecosystem-level responses to climate change. Yet, the effects of warming on microbial CO2 respiration still remain poorly understood under current Earth system models, partly as a result of thermal acclimation of organic matter decomposition. We conducted a 117-day incubation experiment under constant and diurnally varying temperature treatments based on four forest soils varying in vegetation stand and soil horizon. Our results showed that Q10 was greater under varying than constant temperature regimes. This distinction was most likely attributed to differences in the depletion of available carbon between constant high and varying high-temperature treatments, resulting in significantly higher rates of heterotrophic respiration in the varying high-temperature regime. Based on 16S rRNA gene sequencing data using Illumina, the varying high-temperature regime harbored higher prokaryotic alpha-diversity, was more dominated by the copiotrophic strategists and sustained a distinct community composition, in comparison to the constant-high treatment. We found a tightly coupled relationship between Q10 and microbial trophic guilds: the copiotrophic prokaryotes responded positively with high Q10 values, while the oligotrophs showed a negative response. Effects of vegetation stand and soil horizon consistently supported that the copiotrophic vs oligotrophic strategists determine the thermal sensitivity of CO2 flux. Our observations suggest that incorporating prokaryotic functional traits, such as shifts between copiotrophy and oligotrophy, is fundamental to our understanding of thermal acclimation of microbially mediated soil organic carbon cycling. Inclusion of microbial functional shifts may provide the potential to improve our projections of responses in microbial community and CO2 efflux to a changing environment in forest ecosystems.

Effects of light-dark cycle on the spatial distribution and feeding activity of fish larvae of two co-occurring species (Pisces: Hypophthalmidae and Sciaenidae) in a Neotropical floodplain lake

Abstract Most studies on mechanisms regulating fish larvae processes have focused on assessing the isolated effects of food distribution and feeding behavior. However, in natural ecosystems, fish larvae may strongly interact with zooplankton organisms in an array of complex, direct and indirect interdependencies. This study analyzed the spatial distribution, diet and feeding behavior of early stages of Hypophthalmus edentatus and Plagioscion squamosissimus, two fish species co-occurring in an isolated floodplain lake, during the light-dark cycle. Larvae fed more actively during dark periods (dusk and night) when they migrated toward the surface of the lake, and remained on the bottom and fed less during light periods (day and dawn). Cladocerans represented the most frequent prey in the diet of H. edentatus larvae. In turn, P. squamosissimus larvae initially preferred cladocerans and, as they developed, included calanoid copepods in the diet. Significant differences were detected in the frequencies of food items consumed during larval development, which could be related to a better ability of the most developed stages to explore the environment in search of other prey.

Resumo A maioria dos estudos de mecanismos que regulam os processos de larvas de peixes se concentra na avaliação dos efeitos isolados da distribuição do alimento e do comportamento alimentar. No entanto, em ecossistemas naturais, as larvas de peixes podem interagir fortemente com os organismos do zooplâncton em uma série de interdependências complexas, diretas e indiretas. Este estudo analisou a distribuição espacial, dieta e comportamento alimentar dos estágios iniciais de vida de Hypophthalmus edentatus e Plagioscion squamosissimus, duas espécies de peixes coexistentes em uma lagoa isolada de planície de inundação, durante o ciclo claro-escuro. As larvas se alimentaram mais ativamente durante os períodos escuros (crepúsculo e noite) quando ascenderam em direção à superfície da lagoa, enquanto durante os períodos luminosos (dia e amanhecer) permaneceram no fundo e pouco se alimentaram. Os cladóceros foram as presas mais frequentes na dieta de larvas de H. edentatus. Por sua vez, larvas de P. squamosissimus inicialmente preferiram cladóceros, e a medida que se desenvolveram incluíram copépodes calanóides na dieta. Diferenças significativas foram detectadas nas frequências dos itens alimentares consumidos durante o desenvolvimento larval, o que poderia estar relacionado a uma melhor capacidade dos estágios mais desenvolvidos em explorar o ambiente na busca por outras presas.

Trophic ecology and food consumption of fishes in a hypersaline tropical lagoon.

This study evaluated the trophic ecology (diet composition, trophic strategy, similarities and overlap between species, feeding period and food consumption) of six benthivorous fish species in Araruama Lagoon, the largest hypersaline tropical lagoon on the east coast of South America, with an area of 210 km(2) and an average salinity of 52. The burrfish Chilomycterus spinosus fed on Anomalocardia flexuosa shell deposits, ingesting associated fauna. The caitipa mojarra Diapterus rhombeus differed from all other species, having not only the highest proportions of algae and Nematoda, but also feeding on polychaete tentacles. The two mojarras Eucinostomus spp. showed similar trophic strategies, feeding mostly on Polychaeta. The corocoro grunt Orthopristis ruber also fed mainly on Polychaeta, but differed from Eucinostomus spp. in secondary items. The whitemouth croacker Micropogonias furnieri fed mainly on small Crustacea at night, showing a high number of secondary prey items with low frequencies and high prey-specific abundance. The daily food consumption (g food g(-1) fish mass) for Eucinostomus argenteus was 0·012 and was 0·031 and 0·027 for M. furnieri in two different sampling events. The diet similarities between Araruama Lagoon and other brackish and marine environments indicate that hypersalinity is not a predominant factor shaping the trophic ecology of fishes in this lagoon. The stability of hypersaline conditions, without a pronounced gradient, may explain the presence of several euryhaline fishes and invertebrates well adapted to this condition, resulting in a complex food web.

Long-term forest soil warming alters microbial communities in temperate forest soils.

Soil microbes are major drivers of soil carbon cycling, yet we lack an understanding of how climate warming will affect microbial communities. Three ongoing field studies at the Harvard Forest Long-term Ecological Research (LTER) site (Petersham, MA) have warmed soils 5°C above ambient temperatures for 5, 8, and 20 years. We used this chronosequence to test the hypothesis that soil microbial communities have changed in response to chronic warming. Bacterial community composition was studied using Illumina sequencing of the 16S ribosomal RNA gene, and bacterial and fungal abundance were assessed using quantitative PCR. Only the 20-year warmed site exhibited significant change in bacterial community structure in the organic soil horizon, with no significant changes in the mineral soil. The dominant taxa, abundant at 0.1% or greater, represented 0.3% of the richness but nearly 50% of the observations (sequences). Individual members of the Actinobacteria, Alphaproteobacteria and Acidobacteria showed strong warming responses, with one Actinomycete decreasing from 4.5 to 1% relative abundance with warming. Ribosomal RNA copy number can obfuscate community profiles, but is also correlated with maximum growth rate or trophic strategy among bacteria. Ribosomal RNA copy number correction did not affect community profiles, but rRNA copy number was significantly decreased in warming plots compared to controls. Increased bacterial evenness, shifting beta diversity, decreased fungal abundance and increased abundance of bacteria with low rRNA operon copy number, including Alphaproteobacteria and Acidobacteria, together suggest that more or alternative niche space is being created over the course of long-term warming.

Strategies utilized by trophically diverse fungal species for Pinus sylvestris root colonization.

Physiological changes in host plants in response to the broad spectrum of fungal modes of infection are still not well understood. The current study was conducted to better understand the infection of in vitro cultures of Pinus sylvestris L. seedlings by three trophically diverse fungal species, Fusarium oxysporum E. F. Sm. & Swingle, Trichoderma harzianum Rifai and Hebeloma crustuliniforme (Bull.) Quél. Biochemical methods and microscopy were utilized to determine (i) which factors (apoplastic and cellular pH, reactive oxygen species, glutathione and cell death) play a role in the establishment of pathogenic, saprotrophic and mycorrhizal fungi, and (ii) whether cell death is a common response of conifer seedling tissues when they are exposed to trophically diverse fungi. Establishment of the pathogen, F. oxysporum, was observed more frequently in the meristematic region of root tips than in the elongation zone, which was in contrast to T. harzianum and H. crustuliniforme. Ectomycorrhizal (ECM) hyphae, however, were occasionally observed in the studied root zone and caused small changes in the studied factors. Colonization of the meristematic zone occurred due to host cell death. Independently of the zone, changes in cellular pH resulting in an acidic cytoplasm conditioned the establishment of F. oxysporum. Additionally, cell death was negatively correlated with hydrogen peroxide (H2O2) in roots challenged by a pathogenic fungus. Cell death was the only factor uniquely associated with the colonization of host roots by a saprotrophic fungus. The mechanism may differ, however, between the zones since apoplastic pH was negatively correlated with cell death in the elongation zone, whereas in the meristematic zone, none of the studied factors explained cell death. Colonization by the ECM fungus, H. crustuliniforme, was associated with a decreasing number of cells with acidic apoplast and by production of H2O2 in the elongation zone resulting in cell death. Saprotrophic and ECM fungi had a greater effect on cell acidification in the meristematic zone than the pathogenic fungus.

Scale-stacking in the live-bearer Belonesox belizanus (Poeciliidae).

An incidence of scale-stacking was found in a museum collection of Belonesox belizanus (Poeciliidae) from the Río Tesechocán, Veracruz, México. This phenomenon is thought to be unique to lepidophagous East African cichlids, although no studies have addressed the behaviour in any detail. This finding in B. belizanus, the first in Cyprinodontiformes, indicates Belonesox is able to manipulate scales into stacks in the buccal cavity.