Traditional ecological knowledge for monitoring Anaphalis javanica (DC.) Sch.Bip. (Asteraceae) in Bromo Tengger Semeru National Park, Indonesia.

Traditional ecological knowledge (TEK) possessed by indigenous communities offers a vital source of information regarding the status and threats faced by species. Anaphalis javanica (DC.) Sch.Bip. commonly known as Javanese edelweiss is a culturally significant species in Indonesia's mountainous regions, yet conservation efforts for it remain limited. We utilized TEK to assess the status and threats to the Javanese edelweiss in Bromo Tengger Semeru National Park, Indonesia. The research aims to assess the distribution, abundance, population trends, and threats faced by Javanese edelweiss using TEK. We interviewed 641 individuals from seven Tengger villages near the park to gather data on the distribution, status, and threats facing the Javanese edelweiss, contributing to conservation efforts. Data were analyzed using generalized linear mixed models and ordinal logistic regression. TEK regarding the Javanese edelweiss was extensive, as 96.3% of respondents recognized the plant. A majority (73.2%) had observed Javanese edelweiss in the wild, yet a significant portion (85%) perceived it as "very rare" or "rare." Furthermore, 50% of respondents reported a decline in its population. Variations in sighting frequency, perceived abundance, and population trends across different locations provide crucial insights for identifying priority areas and shaping community-based conservation strategies for Javanese edelweiss. This research underscores the importance of integrating TEK into conservation planning, emphasizing community involvement for effective and sustainable biodiversity conservation.

Habitat Suitability in High Andean Butterflies: The Role of Land Cover in the Occurrence and Conservation of Species.

High Andean butterflies in northern South America are subject to landscape change processes. Our study used models to assess the habitat suitability of three Satyrinae species in the Upper Bogotá River Basin, Colombia. These three species include Pedaliodes polla (Thieme), Pedaliodes phaea (Hewitson), and Pedaliodes phaeina (Staudinger), the last two are endemic to Colombia. We used MaxEnt software to assess the habitat quality of these species, analyze the bioclimatic requirements that most influence them, and propose priority conservation areas. Our results indicated that, in most cases, the contribution of cover is more significant than 60%, so this variable determines the habitat capacity to support the species under study. We identified that the areas with suitable habitats are reduced with values less than or equal to 25% and are located in areas with a medium degree of intervention, which allows the species to occur. On the other hand, the climatic variables with the most significant contribution to the models were Temperature Seasonality and Precipitation of Driest Quarter (May-July). Conservation efforts must be focused on the most suitable areas, given the reduction in habitat for these species. Our research emphasizes the need to safeguard well-connected remnants of the high Andean forest and natural cover in agricultural matrices to counter the impact of agricultural expansion.

Comparative assessment of growth curves in Brazilian white Morada Nova hair sheep breed.

The Morada Nova sheep breed is essential for the economy of the semi-arid region of Northeast Brazil, standing out for its adaptability, resistance to parasites and reproductive ability. However, the white variant is endangered, highlighting the importance of studies on its productivity to support conservation efforts. This study focuses on the growth curve of the Morada Nova sheep breed, using nonlinear models and analyzing flock profiles. Total of 764 observations of 165 animals from four farms in Ceará and Rio Grande do Norte, Brazil, were analyzed. Canonical discriminant analysis (CDA) was used for the exploratory analysis and four nonlinear models were used to study the growth curve. Weight from birth to 270 days of age, absolute growth rate (AGR), and the impact of sex on growth curves were assessed. Sex and farm are significant discriminating variables (P < 0.05) for the studied effects (weight and age). Weight was the primary phenotypic biomarker that discriminated between the two indicators, while age was a discriminating indicator only for the core effect. The Gompertz model was the most efficient, presenting the lowest residuals and greatest convergence. The study reveals new information about the growth of Morada Nova sheep, the white variety, including weight differences between the sexes at all analyzed ages and an inflection point before 90 days of age. These discoveries contribute to the understanding of the breed's growth and help in the formulation of conservation strategies.

Genetic diversity and shallow genetic differentiation of the endangered scaly-sided merganser Mergus squamatus.

Examining patterns of genetic diversity are crucial for conservation planning on endangered species, while inferring the underlying process of recent anthropogenic habitat modifications in the context potential long-term demographic changes remains challenging. The globally endangered scaly-sided merganser (SSME), Mergus squamatus, is endemic to a narrow range in Northeast Asia, and its population has recently been contracted into two main breeding areas. Although low genetic diversity has been suggested in the Russian population, the genetic status and demographic history of these individuals have not been fully elucidated. We therefore examined the genetic diversity and structure of the breeding populations of the SSME and investigated the relative importance of historical and recent demographic changes to the present-day pattern of genetic diversity. Using 10 nuclear microsatellite (SSR) markers and mitochondrial DNA (mtDNA) control region sequences, we found limited female-inherited genetic diversity and a high level of nuclear genetic diversity. In addition, analysis of both markers consistently revealed significant but weak divergence between the breeding populations. Inconsistent demographic history parameters calculated from mtDNA and bottleneck analysis results based on SSR suggested a stable historical effective population size. By applying approximate Bayesian computation, it was estimated that populations started to genetically diverge from each other due to recent fragmentation events caused by anthropogenic effects rather than isolation during Last Glacial Maximum (LGM) and post-LGM recolonization. These results suggest that limited historical population size and shallow evolutionary history may be potential factors contributing to the contemporary genetic diversity pattern of breeding SSME populations. Conservation efforts should focus on protecting the current breeding habitats from further destruction, with priority given to both the Russian and Chinese population, as well as restoring the connected suitable breeding grounds.

Causes of admissions and mortality in patients of a wildlife rehabilitation centre in Bulgaria.

Wildlife rescue centres are specialised units with ecological, conservational and veterinary medical activities, which include treatment, rehabilitation, breeding and releasing rare and endangered wild animals into their natural habitat, as well as environmental education. These centres provide an opportunity to monitor ongoing ecological changes in wildlife, environmental pollution and emerging diseases. With the present study, we aimed to analyse the causes and conservation status of the largest wildlife rehabilitation centre in Bulgaria. A total of 18,720 patients, from 26 orders with various conservation statuses and different etiology, have been admitted to the rehabilitation centre for over 25 years. The summarised results showed that 40% of the patients were admitted with an unknown etiology and the proportion of anthropogenic causes was 18%. Natural factors related to incidents with wild animals were 32%, while a share of 10% of the wildlife which resided at the WRBC referred to a part of re-introduction programmes. This type of analysis of wildlife rehabilitation centres could provide useful information about the status of populations and ecosystems, as well as support conservation practices.

Unlocking the tapestry of conservation: Navigating ecological resettlement policies in Nepal.

Conservation initiatives involve a complex interplay of various ecological, socio-political, and economic factors. Ecological resettlement (ER), implemented within the context of nature conservation policies, stands as one of the most contested issues worldwide. This study aims to navigate the domain of ER policy in conservation through discursive institutionalism and a policy arrangement approach. Focusing on Nepal's conservation policy pathways over the last seven decades, we critically analyze policy ideas and narratives, trends, patterns of policy development, institutional arrangements, driving factors, and responses to contemporary ER policies. Methods involved a systematic literature review (n = 271), a comprehensive review of policy documents and project reports (n > 150), and expert interviews (n = 20). Over the past 50 years, >7600 households in Nepal have been displaced in the name of ER and are still persisting despite the rhetoric of participatory conservation. With changes in political regimes, conservation policy has shifted from a hunting-focused approach to landscape-level and transboundary conservation. Initially influenced by internal factors such as economic and political governance, conservation policies were later shaped by international conservation discourse. Also, the operational sphere of such policy ideas and narratives - including actors, resources, discourses, and rules - along with trends, priorities, institutional arrangements, and driving factors of ER policies, has changed over time. Further, the exclusion of deprived communities and the capture of conservation benefits by elites have undermined conservation values. This research stresses the importance of a judicious balance between people's welfare and nature's integrity, emphasizing community-based natural resource management models accredited to a conservation standard. We further urge the revision of displacement-oriented conservation policies to secure the rights of Indigenous people and traditional landholders, thereby ensuring conservation and sustainable development at both national and global levels.

Dynamic shifts of functional diversity through climate-Resilient strategies and farmland restoration in a mountain protected area.

Land-use land-cover (LULC) change contributes to major ecological impacts, particularly in areas undergoing land abandonment, inducing modifications on habitat structure and species distributions. Alternative land-use policies are potential solutions to alleviate the negative impacts of contemporary tendencies of LULC change on biodiversity. This work analyzes these tendencies in the Montesinho Natural Park (Portugal), an area representative of European abandoned mountain rural areas. We built ecological niche models for 226 species of vertebrates (amphibians, reptiles, birds, and mammals) and vascular plants, using a consensus modelling approach available in the R package 'biomod2'. We projected the models to contemporary (2018) and future (2050) LULC scenarios, under four scenarios aiming to secure relevant ecosystem services and biodiversity conservation for 2050: an afforestation and a rewilding scenario, focused on climate-smart management strategies, and a farmland and an agroforestry recovery scenario, based on re-establishing human traditional activities. We quantified the influences of these scenarios on biodiversity through species habitat suitability changes for 2018-2050. We analyzed how these management strategies could influence indices of functional diversity (functional richness, functional evenness and functional dispersion) within the park. Habitat suitability changes revealed complementary patterns among scenarios. Afforestation and rewilding scenarios benefited more species adapted to habitats with low human influence, such as forests and open woodlands. The highest functional richness and dispersion was predicted for rewilding scenarios, which could improve landscape restoration and provide opportunities for the expansion and recolonization of forest areas by native species. The recovery of traditional farming and agroforestry activities results in the lowest values of functional richness, but these strategies contribute to complex landscape matrices with diversified habitats and resources. Moreover, this strategy could offer opportunities for fire suppression and increase landscape fire resistance. An integrative approach reconciling rewilding initiatives with the recovery of extensive agricultural and agroforestry activities is potentially an harmonious strategy for supporting the provision of ecosystem services while securing biodiversity conservation and functional diversity within the natural park.

Chromosome level assembly and annotation of the genome of the endangered giant Patagonian bumble bee Bombus dahlbomii.

This article describes a genome assembly and annotation for Bombus dahlbomii, the giant Patagonian bumble bee. DNA from a single, haploid male collected in Argentina was used for PacBio (HiFi) sequencing and HiC technology was then used to map chromatin contacts. Using Juicer and manual curation, the genome was scaffolded into 18 main pseudomolecules, representing a high quality, near chromosome-level assembly. The sequenced genome size is estimated at 265Mb. The genome was annotated based on RNA-sequencing data of another male from Argentina, and BRAKER3 produced 15,767 annotated genes. The genome and annotation show high completeness, with >95% BUSCO scores for both the genome and annotated genes (based on conserved genes from Hymenoptera). This genome provides a valuable resource for studying the biology of this iconic and endangered species, as well as for understanding the impacts of its decline and designing strategies for its preservation.

Dependence of Europe's most threatened mammals on movement to adapt to climate change.

Current rates of climate change and gloomy climate projections confront managers and conservation planners with the need to integrate climate change into already complex decision-making processes. Predicting and prioritizing climatically stable areas and the areas likely to facilitate adaptive species' range adjustments are important stages in maximizing conservation outcomes and rationalizing future land management. I determined, for the most threatened European terrestrial mammal species, the spatial adaptive trajectories (SATs) of highest expected persistence up to 2080. I devised simple spatial network indices for evaluation of species in those SATs: total persistence; proportion of SATs that offer in situ adaptation (i.e., stable refugia); number of SATs converging in a site; and relationship between SAT convergence and persistence and protected areas, the Natura 2000 and Emerald networks, and areas of low human disturbance. I compared the performance of high-persistence SATs with a scenario in which each species remained in the areas with the best climatic conditions in the baseline period. The 1000 most persistence SATs for each of the 39 species covered one fifth of Europe. The areas with the largest adaptive potential (i.e., high persistence, stability, and SAT convergence) did not always overlap for all the species. Predominantly, these regions were located in southwestern Europe, Central Europe, and Scandinavia, with some occurrences in Eastern Europe. For most species, persistence in the most climatically suitable areas during the baseline period was lower than within SATs, underscoring their reliance on adaptive movements. Importantly, conservation areas (particularly protected areas) covered only minor fractions of species persistence among SATs, and hubs of spatial climate adaptation (i.e., areas of high SAT convergence) were seriously underrepresented in most conservation areas. These results highlight the need to perform analyses on spatial species' dynamics under climate change.

Los mamíferos más amenazados de Europa y su dependencia del movimiento para adaptarse al cambio climático Resumen La tasa actual del cambio climático y las proyecciones climáticas pesimistas confrontan a los gestores y a los planeadores de la conservación con la necesidad de integrar este cambio a la ya de por sí compleja toma de decisiones. La predicción y priorización de áreas con estabilidad climática y áreas con probabilidad de facilitarles ajustes adaptativos de distribución a las especies son etapas importantes para maximizar los resultados de conservación y racionalizar la gestión futura de las tierras. Determiné las trayectorias espaciales adaptativas (TEA) para la mayoría de los mamíferos terrestres más amenazados de Europa con la persistencia esperada más alta hasta el 2080. Diseñé los siguientes índices de redes espaciales simples para la evaluación de especies en aquellas TEA: persistencia total, proporción de TEA que brindan adaptación in situ (refugios estables), número de TEA que convergen en un sitio y relación entre la convergencia de TEA y la persistencia con las áreas protegidas, las redes Natura 2000 y Emerald y las áreas de poca perturbación humana. Comparé el desempeño de las TEA de gran persistencia con un escenario en el que las especies permanecían dentro de las áreas con las mejores condiciones climáticas en el periodo de línea base. Las mil TEA más persistentes para cada una de las 39 especies cubrieron la quinta parte de Europa. Las áreas con el mayor potencial adaptativo (es decir, gran persistencia, estabilidad y convergencia de TEA) no siempre se traslaparon para todas las especies. Estas regiones predominaron en el suroeste de Europa, Europa Central y Escandinavia, con algunas ocurrencias en el este de Europa. Para la mayoría de las especies, la persistencia de las áreas con el mejor clima posible durante el periodo de línea base fue menor que dentro de las TEA, lo que resalta su dependencia por los movimientos adaptativos. Destaca que las áreas de conservación (en particular las áreas protegidas) cubrieron sólo pequeñas fracciones de la persistencia de las especies entre las TEA y los núcleos de adaptación climática (es decir, las áreas de gran convergencia de TEA) contaban con muy poca representación dentro de la mayoría de las áreas de conservación. Estos resultados enfatizan la necesidad de realizar análisis de las dinámicas espaciales de las especies bajo el cambio climático.

Detour canal, a civil engineering heritage created through historical struggle for water resources, now provides the habitats for a rare freshwater fish.

The Ariake catfish, Tachysurusaurantiacus, is a freshwater fish endemic to Kyushu Island, Japan. However, these catfish are now endangered owing to environmental changes. Despite their status, there is scant quantitative research on the Ariake catfish regarding their potential conservation. The Yabe River is a typical catfish habitat situated in the northern part of Kyushu Island (Ariake Area) and has a unique civil engineering heritage, as represented by the so-called 'detour canal'. The canals were created owing to competition by two Domains to divert additional water resources into their own territory for rice cultivation during the Edo Period (1603-1867). To fill the research gap on the Ariake catfish and assess the ecological value of detour canals, in this study, we conducted a survey of local catfish populations and nine environmental parameters that can affect them. We found that the population volume of the Ariake catfish was significantly higher in canals than in ordinary branch rivers. Although the detour canals were not originally constructed for biodiversity conservation, they nonetheless unintentionally provide catfish habitat at present. As these canals represent a remarkable example of a contribution by a civil engineering heritage structure to biodiversity conservation, our study should be used as a potential justification for preserving the canals, as well as conserving the aquatic species that utilise them as vital habitat.

Distribution of the genus Platycerus Geoffroy (Coleoptera, Lucanidae) in Italy.

Background: Stag beetles are saproxylic species that are associated with deadwood in the larval stage and play an important role in forest ecosystem dynamics. In Italy, Platyceruscaprea and Platyceruscaraboides are two small, elusive stag beetle species, whose known distribution is often limited or referring to old records. New information: The present contribution increases the knowledge on the Italian distribution of P.caprea and P.caraboides, adding 70% more sites when compared to previously published records. Ecological traits, especially related to the altitude-elevation distribution in Italy, are also described for these saproxylic beetles.

Global expansion of marine protected areas and the redistribution of fishing effort.

The expansion of marine protected areas (MPAs) is a core focus of global conservation efforts, with the "30x30" initiative to protect 30% of the ocean by 2030 serving as a prominent example of this trend. We consider a series of proposed MPA network expansions of various sizes, and we forecast the impact this increase in protection would have on global patterns of fishing effort. We do so by building a predictive machine learning model trained on a global dataset of satellite-based fishing vessel monitoring data, current MPA locations, and spatiotemporal environmental, geographic, political, and economic features. We then use this model to predict future fishing effort under various MPA expansion scenarios compared to a business-as-usual counterfactual scenario that includes no new MPAs. The difference between these scenarios represents the predicted change in fishing effort associated with MPA expansion. We find that regardless of the MPA network objectives or size, fishing effort would decrease inside the MPAs, though by much less than 100%. Moreover, we find that the reduction in fishing effort inside MPAs does not simply redistribute outside-rather, fishing effort outside MPAs would also decline. The overall magnitude of the predicted decrease in global fishing effort principally depends on where networks are placed in relation to existing fishing effort. MPA expansion will lead to a global redistribution of fishing effort that should be accounted for in network design, implementation, and impact evaluation.

Response of the subalpine bunchgrasses to wildfires and its effects in the relative abundance of the volcano rabbit in the Ajusco-Chichinautzin Mountain Range.

The volcano rabbit (Romerolagus diazi) is a lagomorph endemic to the central mountains of the Trans-Mexican Volcanic Belt and is classified as threatened at extinction risk. It is a habitat specialist in bunchgrass communities. The annual wildfires that occur throughout its distribution range are a vulnerability factor for the species. However, the effects of wildfires on volcano rabbit populations are not fully understood. We evaluated the occupancy and change in the volcano rabbit relative abundance index in the burned bunchgrass communities of the Ajusco-Chichinautzin Mountain Range during an annual cycle of wildfire events. Additionally, we assessed the factors that favor and limit occupation and reoccupation by the volcano rabbit using the relative abundance index in burned plots as an indicator of these processes. The explanatory factors for the response of the volcano rabbit were its presence in the nearby unburned bunchgrasses, the height of three species of bunchgrass communities, the proportion of different types of vegetation cover within a 500 m radius around the burned plots, heterogeneity of the vegetation cover, and the extent of the wildfire. Statistical analyses indicated possible reoccupation in less than a year in burned bunchgrass communities adjacent to unburned bunchgrass communities with volcano rabbits. The relative abundance index of volcano rabbits was not favored when the maximum height of the Muhlenbergia macroura bunchgrass community was less than 0.77 m. When the vegetation around the burned plots was dominated by forest (cover >30% of the buffer) and the fire was extensive, the number of latrines decreased per month but increased when the bunchgrass and shrub cover was greater around the burned plots. While the statistical results are not conclusive, our findings indicate a direction for future projects, considering extensive monitoring to obtain a greater number of samples that contribute to consolidating the models presented.

Impact of infectious diseases on wild bovidae populations in Thailand: insights from population modelling and disease dynamics.

The wildlife and livestock interface is vital for wildlife conservation and habitat management. Infectious diseases maintained by domestic species may impact threatened species such as Asian bovids, as they share natural resources and habitats. To predict the population impact of infectious diseases with different traits, we used stochastic mathematical models to simulate the population dynamics over 100 years for 100 times in a model gaur (Bos gaurus) population with and without disease. We simulated repeated introductions from a reservoir, such as domestic cattle. We selected six bovine infectious diseases; anthrax, bovine tuberculosis, haemorrhagic septicaemia, lumpy skin disease, foot and mouth disease and brucellosis, all of which have caused outbreaks in wildlife populations. From a starting population of 300, the disease-free population increased by an average of 228% over 100 years. Brucellosis with frequency-dependent transmission showed the highest average population declines (-97%), with population extinction occurring 16% of the time. Foot and mouth disease with frequency-dependent transmission showed the lowest impact, with an average population increase of 200%. Overall, acute infections with very high or low fatality had the lowest impact, whereas chronic infections produced the greatest population decline. These results may help disease management and surveillance strategies support wildlife conservation.

Slope protection effect of typical vegetation in the Three Gorges reservoir area under extreme rainfall.

In recent years, vegetation plays a key role in landslide stability under extreme rainfall in the Three Gorges Reservoir area, so it is very important to identify the mechanism of vegetation slope protection. This study takes wildcat landslide in Three Gorges Reservoir area as the research object, using indoor landslide model test and building monitoring systems such as stress field, displacement field, and soil erosion, to illustrate the protective effect of typical vegetation. Furthermore, Bermuda cover effectively reduces pore water pressure, pore soil pressure, displacement, and turbidity. In particular, the three stages of interception and buffering of rainfall by stems and leaves, infiltration and absorption of rainfall by the root system, and the reinforcement of the slope against sliding forces by the root system have been divided. Moreover, these findings offer valuable preliminary insights for guiding landslide mitigation strategies in the Three Gorges Reservoir area.

Land-cover change in Cuba and implications for the area of distribution of a specialist's host-plant.

Changes in land cover directly affect biodiversity. Here, we assessed land-cover change in Cuba in the past 35 years and analyzed how this change may affect the distribution of Omphalea plants and Urania boisduvalii moths. We analyzed the vegetation cover of the Cuban archipelago for 1985 and 2020. We used Google Earth Engine to classify two satellite image compositions into seven cover types: forest and shrubs, mangrove, soil without vegetation cover, wetlands, pine forest, agriculture, and water bodies. We considered four different areas for quantifications of land-cover change: (1) Cuban archipelago, (2) protected areas, (3) areas of potential distribution of Omphalea, and (4) areas of potential distribution of the plant within the protected areas. We found that "forest and shrubs", which is cover type in which Omphalea populations have been reported, has increased significantly in Cuba in the past 35 years, and that most of the gained forest and shrub areas were agricultural land in the past. This same pattern was observed in the areas of potential distribution of Omphalea; whereas almost all cover types were mostly stable inside the protected areas. The transformation of agricultural areas into forest and shrubs could represent an interesting opportunity for biodiversity conservation in Cuba. Other detailed studies about biodiversity composition in areas of forest and shrubs gain would greatly benefit our understanding of the value of such areas for conservation.

When birds of a feather flock together: Severe genomic erosion and the implications for genetic rescue in an endangered island passerine.

The Seychelles magpie-robin's (SMR) five island populations exhibit some of the lowest recorded levels of genetic diversity among endangered birds, and high levels of inbreeding. These populations collapsed during the 20th century, and the species was listed as Critically Endangered in the IUCN Red List in 1994. An assisted translocation-for-recovery program initiated in the 1990s increased the number of mature individuals, resulting in its downlisting to Endangered in 2005. Here, we explore the temporal genomic erosion of the SMR based on a dataset of 201 re-sequenced whole genomes that span the past ~150 years. Our sample set includes individuals that predate the bottleneck by up to 100 years, as well as individuals from contemporary populations established during the species recovery program. Despite the SMR's recent demographic recovery, our data reveal a marked increase in both the genetic load and realized load in the extant populations when compared to the historical samples. Conservation management may have reduced the intensity of selection by increasing juvenile survival and relaxing intraspecific competition between individuals, resulting in the accumulation of loss-of-function mutations (i.e. severely deleterious variants) in the rapidly recovering population. In addition, we found a 3-fold decrease in genetic diversity between temporal samples. While the low genetic diversity in modern populations may limit the species' adaptability to future environmental changes, future conservation efforts (including IUCN assessments) may also need to assess the threats posed by their high genetic load. Our computer simulations highlight the value of translocations for genetic rescue and show how this could halt genomic erosion in threatened species such as the SMR.

Surveying lichen diversity in forests: A comparison of expert mapping and eDNA metabarcoding of bark surfaces.

Lichens are an important part of forest ecosystems, contributing to forest biodiversity, the formation of micro-niches and nutrient cycling. Assessing the diversity of lichenised fungi in complex ecosystems, such as forests, requires time and substantial skills in collecting and identifying lichens. The completeness of inventories thus largely depends on the expertise of the collector, time available for the survey and size of the studied area. Molecular methods of surveying biodiversity hold the promise to overcome these challenges. DNA barcoding of individual lichen specimens and bulk collections is already being applied; however, eDNA methods have not yet been evaluated as a tool for lichen surveys. Here, we assess which species of lichenised fungi can be detected in eDNA swabbed from bark surfaces of living trees in central European forests. We compare our findings to an expert floristic survey carried out in the same plots about a decade earlier. In total, we studied 150 plots located in three study regions across Germany. In each plot, we took one composite sample based on six trees, belonging to the species Fagussylvatica, Piceaabies and Pinussylvestris. The eDNA method yielded 123 species, the floristic survey 87. The total number of species found with both methods was 167, of which 48% were detected only in eDNA, 26% only in the floristic survey and 26% in both methods. The eDNA contained a higher diversity of inconspicuous species. Many prevalent taxa reported in the floristic survey could not be found in the eDNA due to gaps in molecular reference databases. We conclude that, currently, eDNA has merit as a complementary tool to monitor lichen biodiversity at large scales, but cannot be used on its own. We advocate for the further development of specialised and more complete databases.

Remnant salmon life history diversity rediscovered in a highly compressed habitat.

Chinook salmon (Oncorhynchus tshawytscha) display remarkable life history diversity, underpinning their ability to adapt to environmental change. Maintaining life history diversity is vital to the resilience and stability of Chinook salmon metapopulations, particularly under changing climates. However, the conditions that promote life history diversity are rapidly disappearing, as anthropogenic forces promote homogenization of habitats and genetic lineages. In this study, we use the highly modified Yuba River in California to understand if distinct genetic lineages and life histories still exist, despite reductions in spawning habitat and hatchery practices that have promoted introgression. There is currently a concerted effort to protect federally listed Central Valley spring-run Chinook salmon populations, given that few wild populations still exist. Despite this, we lack a comprehensive understanding of the genetic and life history diversity of Chinook salmon present in the Yuba River. To understand this diversity, we collected migration timing data and GREB1L genotypes from hook-and-line, acoustic tagging, and carcass surveys of Chinook salmon in the Yuba River between 2009 and 2011. Variation in the GREB1L region of the genome is tightly linked with run timing in Chinook salmon throughout their range, but the relationship between this variation and entry on spawning grounds is little explored in California's Central Valley. We found that the date Chinook salmon crossed the lowest barrier to Yuba River spawning habitat (Daguerre Point Dam) was tightly correlated with their GREB1L genotype. Importantly, our study confirms that ESA-listed spring-run Chinook salmon are spawning in the Yuba River, promoting a portfolio of life history and genetic diversity, despite the highly compressed habitat. This work highlights the need to identify and protect this life history diversity, especially in heavily impacted systems, to maintain healthy Chinook salmon metapopulations. Without protection, we run the risk of losing the last vestiges of important genetic variation.