Accurate prediction of in vivo protein abundances by coupling constraint-based modelling and machine learning.

Quantification of how different environmental cues affect protein allocation can provide important insights for understanding cell physiology. While absolute quantification of proteins can be obtained by resource-intensive mass-spectrometry-based technologies, prediction of protein abundances offers another way to obtain insights into protein allocation. Here we present CAMEL, a framework that couples constraint-based modelling with machine learning to predict protein abundance for any environmental condition. This is achieved by building machine learning models that leverage static features, derived from protein sequences, and condition-dependent features predicted from protein-constrained metabolic models. Our findings demonstrate that CAMEL results in excellent prediction of protein allocation in E. coli (average Pearson correlation of at least 0.9), and moderate performance in S. cerevisiae (average Pearson correlation of at least 0.5). Therefore, CAMEL outperformed contending approaches without using molecular read-outs from unseen conditions and provides a valuable tool for using protein allocation in biotechnological applications.

Genotype by environment interaction for somatic cell score in Holstein cattle of southern Brazil via reaction norms.

OBJECTIVE: The objective of this study was to evaluate the genetic behavior of a population of Holstein cattle in response to the variation of environmental temperature by analyzing the effects of genotype by environment interaction (GEI) through reaction norms for the somatic cell score (SCS). METHODS: Data was collected for 67,206 primiparous cows from the database of the Paraná Holstein Breeders Association in Brazil, with the aim of evaluating the temperature effect, considered as an environmental variable, distinguished under six gradients, with the variation range found being 17°C to 19.5°C, over the region. A reaction norm model was adopted utilizing the fourth order under the Legendre polynomials, using the mixed models of analysis by the restricted maximum likelihood method by the WOMBAT software. Additionally, the genetic behavior of the 15 most representative bulls was assessed, in response to the changes in the temperature gradient. RESULTS: A mean score of 2.66 and a heritability variation from 0.17 to 0.23 was found in the regional temperature increase. The correlation between the environmental gradients proved to be higher than 0.80. Distinctive genetic behaviors were observed according to the increase in regional temperature, with an observed increase of up to 0.258 in the breeding values of some animals, as well as a reduction in the breeding of up to 0.793, with occasional reclassifications being observed as the temperature increased. CONCLUSION: Non-relevant GEI for SCS were observed in Holstein cattle herds of southern Brazil. Thus, the inclusion of the temperature effect in the model of genetic evaluation of SCS for the southern Brazilian Holstein breed is not required.

Career Adaptability in the 9th Year: Efficacy of an Intervention in Two Consecutive School Years / Adaptabilidade de Carreira no 9º ano: Eficácia da Intervenção em Dois Anos Letivos Consecutivos / Adaptación Escolar en el 9º año: Eficacia de la intervención en dos años Escolares Consecutivos

Abstract The program Eu Pertenço ao Meu Futuro! (I Belong to My Future!) has evidence of effectiveness in the career adaptability of 9th-year Portuguese students. This study evaluates its effectiveness in two consecutive school years, 2015/16 and 2016/17 - a period with a series of government changes that impacted school educational projects. This study was conducted with 2,376 students (1201 (50.5%) boys; age M = 14.53 years; SD = .836), 1138 of whom were randomized into the experimental group and 816 in the control group. Data were collected by means of the Adaptability Scale, administered in a pre- and posttest with a seven-weeks interval, and treated using the MANOVA. The intervention achieved the expected results regarding confidence and control in 2016/17. The program had different effects in the two school years, reaching more favorable outcomes in the second year, which may be explained by contextual factors and the intervention process.

Resumo O programa Eu Pertenço ao Meu Futuro! tem evidências de eficácia na adaptabilidade de carreira de alunos/as portugueses do 9.º ano escolar. Contudo, variações desta eficácia, nunca foram analisadas. Este estudo teve por objetivo avaliar a eficácia daquele em dois anos letivos consecutivos, 2015/16 e 2016/17, período de mudanças governamentais, com impacto nos projetos educativos das escolas. Participaram 2376 alunos/as [1201 (50.5%) rapazes; idade M = 14.53 anos; DP = .836], 1138 do grupo experimental e 816 do grupo de controlo. Respostas à Escala sobre Adaptabilidade, num pré e pós-teste, intervalados sete semanas, foram tratadas por meio da MANOVA. Os resultados indicam que a intervenção atingiu resultados esperados, na confiança e no controlo, em 2016/17. O programa teve efeitos distintos nos dois anos letivos, mais favoráveis no segundo ano. Torna-se necessário considerar os fatores contextuais e do processo da intervenção que possam explicar tais efeitos.

Resumen El programa Eu Pertenço ao Meu Futuro! ("¡Pertenezco a mi futuro!") tiene evidencia de eficacia en la adaptación de los/las estudiantes portugueses/as del 9.º año. Pero todavía no se han estudiado las variaciones de esta eficacia. Este estudio pretende evaluar la eficacia de esta adaptación en dos años escolares consecutivos, 2015/16 y 2016/17, un período de cambios de gobierno con impactos en los proyectos educativos escolares. Participaron 2.376 estudiantes [1.201 (50,5%) niños; edad M = 14,53 años; DE = .836], 1.138 del grupo experimental y 816 del grupo control. Las respuestas a la Escala de Adaptabilidad, en un pre-test y post-test, con un intervalo de siete semanas, se trataron con MANOVA. Los resultados indican que la intervención logró los resultados esperados en confianza y control en el 2016/17. El programa tuvo diferentes efectos en los años escolares, más favorables en el segundo año. Es necesario considerar los factores contextuales y el proceso de intervención que pueden explicar tales efectos.

Best linear model to explain variability in the growth in Blanco Orejinegro cattle and effect of the serological status for bovine viral diarrhea and bovine leukosis / Melhor modelo linear para explicar a variabilidade no crescimento de bovinos Blanco Orejinegro e efeito do status sorológico para diarreia viral bovina e leucose bovina

The cattle breed Blanco Orejinegro (BON) is an important animal genetic resource in Colombia that needs to be studied to identify its productive benefits for Colombian livestock. The aim of this work was to establish the best linear model that explains the variability for birth weight, weaning weight and yearling weight, and estimate the effect of the serological status for Bovine Viral Diarrhea (BVD) and Bovine Leukosis (BL) in BON cattle in Colombia. The information on animal weighings belonging to 14 BON cattle herds, was collected and cleansed. Using the least squares method, 12 linear models were evaluated including as fixed effects, factors such as herd, sex, weighing month, birth order, season (rainy or dry), birth year, and contemporary group (formed by the concatenation of the factors herd, sex, and birth year). The weighing age was included as a covariate for weaning and yearling weights. For the selection of a model that best describes each parameter, the criteria for choosing models, such as Akaike information criterion (AIC), Bayesian Information criterion (BIC), coefficient of determination (R2 ), and the sum of squares of the error (SSE), were considered. The model that included the contemporary group showed the best fit, being also the best to describe the three parameters evaluated, since, of the four criteria considered for its evaluation, AIC and SSE showed the lowest values and the highest R2 . With this model, weight predictions with higher precision were able to be performed. Employing indirect ELISA screening tests of blood plasma, the serological status of each animal was estimated for BVD and BL viral infections. The serological status of these two viral infections was included in the best-fit model. There was no significant effect of the serological status on the parameters evaluated, so there are indications that animals that came in contact with the virus were not affected during growth.(AU)

A raça bovina Blanco Orejinegro (BON) é um importante recurso genético animal da Colômbia que requer estudos que identifiquem seus benefícios produtivos para a bovinocultura colombiana. O objetivo deste trabalho foi identificar o melhor modelo linear que explique a variabilidade do peso ao nascimento, ao desmame e ao ano e estimar o efeito do status sorológico para diarréia viral (BVD) e leucose bovina (BL) em gado BON da Colômbia. As informações sobre a pesagem de animais pertencentes a 14 fazendas dedicadas à criação de BON foram coletadas e depuradas. Utilizando o método dos mínimos quadrados, foram avaliados 12 modelos lineares nos quais foram incluídos como efeitos fixos fatores de rebanho, sexo, mês de pesagem, ordem de parição, época de nascimento (chuvosa ou seca), ano de nascimento e grupo de contemporâneos; a idade no momento da pesagem foi incluída como covariável para as características peso ao desmame e peso ao ano. Para a escolha do modelo que melhor descreve cada característica, foram considerados os critérios para escolha dos modelos AIC, BIC, coeficiente de determinação (R2 ) e soma dos quadrados dos erros (SCE). Verificou-se que o modelo que incluía o grupo de contemporâneos apresentou o melhor ajuste, sendo o melhor para descrever as três características avaliadas, uma vez que, dentre os quatro critérios levados em consideração para a sua avaliação, o AIC e a SCE apresentaram os menores valores e os R2 mais altos. Com este modelo, foi possível fazer predições de peso com maior acurácia. Os testes ELISA de rastreamento indireto estimaram o status sorológico de cada animal para infecções virais por BVD e BL. O efeito do status sorológico nessas duas infecções virais foi incluído no modelo que apresentou melhor ajuste. Não houve efeito do status sorológico sobre as características avaliadas, portanto há indicações de que os animais que tiveram contato com o vírus não foram afetados durante o crescimento.(AU)

Hierarchical partitioning of fish diversity and scale-dependent environmental effects in tropical coastal ecosystems.

The spatial structure of the fish diversity and site-scale and landscape-scale environmental effects were investigated across hierarchical levels in tropical coastal ecosystems. Total diversity (γ) was hierarchically partitioned into α and ß components using both the additive and multiplicative methods. A model selection based on the AICc was applied to generalized linear mixed models relating diversity measures to environmental variables and including random effects for hierarchical levels and season. Short-term seasonal effects were negligible. Spatial effects were more relevant at the site level and negligible at the subregion level, due to the high spatial heterogeneity and the natural pooling of ecosystems, respectively. Site-scale environmental effects were more relevant at the subregion level, with eutrophic conditions (continental influence) favoring the species richness (α and γ) and higher absence of species (ßA) in oligotrophic conditions (marine influence). At the system level, the positive effect of the distance from the ocean on γ and higher ßA in oligotrophic conditions reinforced the positive continental influence on fish diversity. Environmental homogenization processes were most likely associated with the negative effect of the pasture cover on α at the system level, and γ and ßA at the site level. The negative effect of the forest cover on the later diversity measure evidenced its relevance to maintain richer but more similar assemblages, whereas the positive continental influence was most likely due to the loss of stenohaline marine species. This study evidenced that disentangling spatial, land use, and marine vs. continental effects on diversity components is critical to understand the primary determinants of the fish diversity in tropical coastal ecosystems.

Evaluation of genotype by environment interactions on milk production traits of Holstein cows in southern Brazil.

OBJECTIVE: This study assessed the possible existence of genotype by environment interactions for milk, fat and protein yields in Holstein cattle raised in one of the most important milk production basins in Brazil. METHODS: Changes in the genetic parameters and breeding values were evaluated for 57,967 animals from three distinct regions of southern Brazil, divided according to differences in climate. The genotype by environment interaction was determined by genetic correlations between regions, estimated by the restricted maximum likelihood, considering the animal model. Bull rankings were investigated to verify the ratio of coincident selected animals between regions for each trait. RESULTS: The estimates of heritability coefficients were similar between two regions, but were lower in the third evaluated area, for all traits. Genetic correlations between regions were high, ranging from 0.91 to 0.99 for milk, fat and protein yields, representing the absence of a genotype by environment interaction for productive traits. The percentage of selection error between regions for the top 10% of animals ranged from 0.88% to 2.07% for milk yield, 0.99% to 2.46% for fat yield and 0.59% to 3.15% for protein yield. CONCLUSION: A slight change in genotype between areas was expected since no significant genotype by environment interactions were identified, facilitating the process of selecting Holstein cattle in southern Brazil.

Condition factor variations over time and trophic position among four species of Characidae from Amazonian floodplain lakes: effects of an anomalous drought / Variações do fator de condição de quatro espécies de Characidae de lagos de várzea da Amazônia como função do tempo e da posição trófica: efeitos de uma seca anômala

The effects of extreme droughts on freshwater fish remain unknown worldwide. In this paper, we estimated the condition factor, a measure of relative fitness based on the relationship of body weight to length, in four fish species representing two trophic levels (omnivores and piscivores) from Amazonian floodplain lakes for three consecutive years: 2004, 2005 (an anomalous drought year), and 2006. The two omnivores, Colossoma macropomum and Mylossoma duriventre, exhibited trends consistent with their life cycles in 2004 and 2006: high values during the hydrologic seasons of high water, receding water, and low water, with a drop following reproduction following the onset of rising water. However during the drought year of 2005 the condition factor was much lower than normal during receding and low water seasons, probably as a result of an abnormal reduction in resource availability in a reduced habitat. The two piscivorous piranhas, Serrasalmus spilopleura and S. elongatus, maintained relatively stable values of condition factor over the hydrologic cycles of all three years, with no apparent effect of the drought, probably because the reduction in habitat is counterbalanced by the resulting increase in relative prey density. We suggest that if predictions of increasing drought in the Amazon are correct, predatory species may benefit, at least in the short run, while omnivores may be negatively affected.(AU)

Os efeitos de secas extremas sobre peixes de água doce ainda é globalmente desconhecido. Neste artigo, nós estimamos o fator de condição, uma medida relativa de bem estar baseada na relação entre e peso do corpo e o comprimento, em quatro espécies de peixes de lagos da Amazônia, pertencentes a dois níveis tráficos (onívoros e carnívoros), capturadas durante três anos consecutivos: 2004, 2005 (quando ocorreu uma seca anômala) e 2006. As duas espécies onívoras, Colossoma macropomum e Mylossoma duriventre exibiram tendências consistentes com seu ciclo de vida nos anos de 2004 e 2006: valores mais altos na cheia, vazante e seca, seguida por uma queda na enchente que coincide com a estação reprodutiva. No entanto, o fator de condição foi muito menor durante a seca e a enchente em 2005, provavelmente devido a redução anormal na disponibilidade de recursos em um habitat reduzido. As duas espécies piscívoras, as piranhas Serrasalmus spilopleura e S. elongatus, mantiveram relativa estabilidade nas estimativas do fator d condição, ao longo do ciclo hidrológico dos três anos, sem efeito aparente da seca extrema, provavelmente porque a redução do habitat foi contrabalanceada pelo aumento na densidade de presas. Caso as predições de aumento de frequência de secas extremas venha a se confirmar, acreditamos que espécies predadoras poderão ser beneficiadas, ao menos no curto prazo, enquanto as onívoras serão negativamente afetadas.(AU)

Condition factor variations over time and trophic position among four species of Characidae from Amazonian floodplain lakes: effects of an anomalous drought / Variações do fator de condição de quatro espécies de Characidae de lagos de várzea da Amazônia como função do tempo e da posição trófica: efeitos de uma seca anômala

Abstract The effects of extreme droughts on freshwater fish remain unknown worldwide. In this paper, we estimated the condition factor, a measure of relative fitness based on the relationship of body weight to length, in four fish species representing two trophic levels (omnivores and piscivores) from Amazonian floodplain lakes for three consecutive years: 2004, 2005 (an anomalous drought year), and 2006. The two omnivores, Colossoma macropomum and Mylossoma duriventre, exhibited trends consistent with their life cycles in 2004 and 2006: high values during the hydrologic seasons of high water, receding water, and low water, with a drop following reproduction following the onset of rising water. However during the drought year of 2005 the condition factor was much lower than normal during receding and low water seasons, probably as a result of an abnormal reduction in resource availability in a reduced habitat. The two piscivorous piranhas, Serrasalmus spilopleura and S. elongatus, maintained relatively stable values of condition factor over the hydrologic cycles of all three years, with no apparent effect of the drought, probably because the reduction in habitat is counterbalanced by the resulting increase in relative prey density. We suggest that if predictions of increasing drought in the Amazon are correct, predatory species may benefit, at least in the short run, while omnivores may be negatively affected.

Resumo Os efeitos de secas extremas sobre peixes de água doce ainda é globalmente desconhecido. Neste artigo, nós estimamos o fator de condição, uma medida relativa de bem estar baseada na relação entre e peso do corpo e o comprimento, em quatro espécies de peixes de lagos da Amazônia, pertencentes a dois níveis tróficos (onívoros e carnívoros), capturadas durante três anos consecutivos: 2004, 2005 (quando ocorreu uma seca anômala) e 2006. As duas espécies onívoras, Colossoma macropomum e Mylossoma duriventre exibiram tendências consistentes com seu ciclo de vida nos anos de 2004 e 2006: valores mais altos na cheia, vazante e seca, seguida por uma queda na enchente que coincide com a estação reprodutiva. No entanto, o fator de condição foi muito menor durante a seca e a enchente em 2005, provavelmente devido a redução anormal na disponibilidade de recursos em um habitat reduzido. As duas espécies piscívoras, as piranhas Serrasalmus spilopleura e S. elongatus, mantiveram relativa estabilidade nas estimativas do fator d condição, ao longo do ciclo hidrológico dos três anos, sem efeito aparente da seca extrema, provavelmente porque a redução do habitat foi contrabalanceada pelo aumento na densidade de presas. Caso as predições de aumento de frequência de secas extremas venha a se confirmar, acreditamos que espécies predadoras poderão ser beneficiadas, ao menos no curto prazo, enquanto as onívoras serão negativamente afetadas.

The Domestication of the Amazon Tree Grape (Pourouma cecropiifolia) Under an Ecological Lens.

Domestication studies traditionally focus on the differences in morphological characteristics between wild and domesticated populations that are under direct selection, the components of the domestication syndrome. Here, we consider that other aspects can be modified, because of the interdependence between plant characteristics and the forces of natural selection. We investigated the ongoing domestication of Pourouma cecropiifolia populations cultivated by the Ticuna people in Western Amazonia, using traditional and ecological approaches. We compared fruit characteristics between wild and domesticated populations to quantify the direct effects of domestication. To examine the characteristics that are not under direct selection and the correlated effects of human selection and natural selection, we investigated the differences in vegetative characteristics, changes in seed:fruit allometric relations and the relations of these characteristics with variation in environmental conditions summarized in a principal component analysis. Domestication generated great changes in fruit characteristics, as expected in fruit crops. The fruits of domesticated plants had 20× greater mass and twice as much edible pulp as wild fruits. The plant height:DBH ratio and wood density were, respectively, 42% and 22% smaller in domesticated populations, probably in response to greater luminosity and higher sand content of the cultivated landscapes. Seed:fruit allometry was modified by domestication: although domesticated plants have heavier seeds, the domesticated fruits have proportionally (46%) smaller seed mass compared to wild fruits. The high light availability and poor soils of cultivated landscapes may have contributed to seed mass reduction, while human selection promoted seed mass increase in correlation with fruit mass increase. These contrasting effects generated a proportionately smaller increase in seed mass in domesticated plants. In this study, it was not possible to clearly dissociate the environmental effects from the domestication effects in changes in morphological characteristics, because the environmental conditions were intensively modified by human management, showing that plant domestication is intrinsically related to landscape domestication. Our results suggest that evaluation of environmental conditions together with human selection on domesticated phenotypes provide a better understanding of the changes generated by domestication in plants.

Condition factor variations over time and trophic position among four species of Characidae from Amazonian floodplain lakes: effects of an anomalous drought

Abstract The effects of extreme droughts on freshwater fish remain unknown worldwide. In this paper, we estimated the condition factor, a measure of relative fitness based on the relationship of body weight to length, in four fish species representing two trophic levels (omnivores and piscivores) from Amazonian floodplain lakes for three consecutive years: 2004, 2005 (an anomalous drought year), and 2006. The two omnivores, Colossoma macropomum and Mylossoma duriventre, exhibited trends consistent with their life cycles in 2004 and 2006: high values during the hydrologic seasons of high water, receding water, and low water, with a drop following reproduction following the onset of rising water. However during the drought year of 2005 the condition factor was much lower than normal during receding and low water seasons, probably as a result of an abnormal reduction in resource availability in a reduced habitat. The two piscivorous piranhas, Serrasalmus spilopleura and S. elongatus, maintained relatively stable values of condition factor over the hydrologic cycles of all three years, with no apparent effect of the drought, probably because the reduction in habitat is counterbalanced by the resulting increase in relative prey density. We suggest that if predictions of increasing drought in the Amazon are correct, predatory species may benefit, at least in the short run, while omnivores may be negatively affected.

Resumo Os efeitos de secas extremas sobre peixes de água doce ainda é globalmente desconhecido. Neste artigo, nós estimamos o fator de condição, uma medida relativa de bem estar baseada na relação entre e peso do corpo e o comprimento, em quatro espécies de peixes de lagos da Amazônia, pertencentes a dois níveis tróficos (onívoros e carnívoros), capturadas durante três anos consecutivos: 2004, 2005 (quando ocorreu uma seca anômala) e 2006. As duas espécies onívoras, Colossoma macropomum e Mylossoma duriventre exibiram tendências consistentes com seu ciclo de vida nos anos de 2004 e 2006: valores mais altos na cheia, vazante e seca, seguida por uma queda na enchente que coincide com a estação reprodutiva. No entanto, o fator de condição foi muito menor durante a seca e a enchente em 2005, provavelmente devido a redução anormal na disponibilidade de recursos em um habitat reduzido. As duas espécies piscívoras, as piranhas Serrasalmus spilopleura e S. elongatus, mantiveram relativa estabilidade nas estimativas do fator d condição, ao longo do ciclo hidrológico dos três anos, sem efeito aparente da seca extrema, provavelmente porque a redução do habitat foi contrabalanceada pelo aumento na densidade de presas. Caso as predições de aumento de frequência de secas extremas venha a se confirmar, acreditamos que espécies predadoras poderão ser beneficiadas, ao menos no curto prazo, enquanto as onívoras serão negativamente afetadas.

Condition factor variations over time and trophic position among four species of Characidae from Amazonian floodplain lakes: effects of an anomalous drought

Abstract The effects of extreme droughts on freshwater fish remain unknown worldwide. In this paper, we estimated the condition factor, a measure of relative fitness based on the relationship of body weight to length, in four fish species representing two trophic levels (omnivores and piscivores) from Amazonian floodplain lakes for three consecutive years: 2004, 2005 (an anomalous drought year), and 2006. The two omnivores, Colossoma macropomum and Mylossoma duriventre, exhibited trends consistent with their life cycles in 2004 and 2006: high values during the hydrologic seasons of high water, receding water, and low water, with a drop following reproduction following the onset of rising water. However during the drought year of 2005 the condition factor was much lower than normal during receding and low water seasons, probably as a result of an abnormal reduction in resource availability in a reduced habitat. The two piscivorous piranhas, Serrasalmus spilopleura and S. elongatus, maintained relatively stable values of condition factor over the hydrologic cycles of all three years, with no apparent effect of the drought, probably because the reduction in habitat is counterbalanced by the resulting increase in relative prey density. We suggest that if predictions of increasing drought in the Amazon are correct, predatory species may benefit, at least in the short run, while omnivores may be negatively affected.

Resumo Os efeitos de secas extremas sobre peixes de água doce ainda é globalmente desconhecido. Neste artigo, nós estimamos o fator de condição, uma medida relativa de bem estar baseada na relação entre e peso do corpo e o comprimento, em quatro espécies de peixes de lagos da Amazônia, pertencentes a dois níveis tróficos (onívoros e carnívoros), capturadas durante três anos consecutivos: 2004, 2005 (quando ocorreu uma seca anômala) e 2006. As duas espécies onívoras, Colossoma macropomum e Mylossoma duriventre exibiram tendências consistentes com seu ciclo de vida nos anos de 2004 e 2006: valores mais altos na cheia, vazante e seca, seguida por uma queda na enchente que coincide com a estação reprodutiva. No entanto, o fator de condição foi muito menor durante a seca e a enchente em 2005, provavelmente devido a redução anormal na disponibilidade de recursos em um habitat reduzido. As duas espécies piscívoras, as piranhas Serrasalmus spilopleura e S. elongatus, mantiveram relativa estabilidade nas estimativas do fator d condição, ao longo do ciclo hidrológico dos três anos, sem efeito aparente da seca extrema, provavelmente porque a redução do habitat foi contrabalanceada pelo aumento na densidade de presas. Caso as predições de aumento de frequência de secas extremas venha a se confirmar, acreditamos que espécies predadoras poderão ser beneficiadas, ao menos no curto prazo, enquanto as onívoras serão negativamente afetadas.

Intra- and inter-annual changes in the condition factors of three Curimatidae detritivores from Amazonian floodplain lakes / Variação intra e interanual do fator de condição de três espécies detritívoras de Curimatidae em lagos de várzea da Amazônia

The flood pulse is a key factor that drives the biota of large rivers with adjacent floodplains, but the direction and intensity of its effects are not uniform for all trophic guilds of fish. In this study, we tested the existence of intra- and inter-annual changes in the relative condition factors (kn) of three Curimatidae: Potamorhina altamazonica, Potamorhina latior, and Psectrogaster rutiloides. We used weight and length data from fish that were caught in eight floodplain lakes of the Rio Solimões. These data were from experimental fisheries during each season of the hydrological cycle: flooding, flood, drying, and dry from 2004, 2005, and 2006. In general, there are similar patterns of intra-annual changes for these three species, with the highest estimates of kn during high water conditions. The lowest values were observed during the drying and dry seasons of 2005, when an extreme drought occurred in the Amazon basin. Higher values were observed during the same seasons in the year post-drought. We hypothesized that these patterns would be explained by the biological characteristics of these species and the effects of intra-annual hydrological changes, mainly the flood pulse effect, and by inter-annual climatic events, which are determined by global climate phenomena.

O pulso de inundação é considerado um fator chave no direcionamento da biota de grandes rios associados a área de várzea, mas a direção e intensidade dos efeitos do pulso de inundação não são uniformes para todas as guildas tróficas dos peixes. Neste estudo, nós testamos a existência de mudanças intra e inter-anuais no fator de condição (Kn) de três curimatideos: Potamorhina altamazonica, Potamorhina latior e Psectrogaster rutiloides. Foram usados dados de peso e comprimento de peixes capturados em oito lagos, localizados na planície aluvial do rio Solimões. Estes dados foram obtidos em pescarias experimentais realizadas em quatro fases do ciclo hidrológico: enchente, cheia, vazante e seca nos anos de 2004, 2005 e 2006. Observamos um padrão similar de variação intra-anual para as três espécies, com maiores valores de Kn durante o período de águas altas. O valor mais baixo foi observado no período de vazante e seca em 2005 quando ocorreu um evento de seca extrema na bacia. Valores altos foram observados, durante o mesmo período, no ano posterior a seca. Consideramos que estes padrões são explicados pelas características biológicas das espécies e pelo efeito das mudanças ambientais determinadas pelo efeito do pulso de inundação, além da contribuição de eventos climáticos em escala global.

Efectos de los plaguicidas sobre el ambiente y la salud / Effects of pesticides on health and the environment

Desde las épocas tempranas del surgimiento y desarrollo del hombre, se tuvo la necesidad de combatir las plagas que afectaban sus cultivos y productos con el uso de sustancias capaces de eliminarlos. El objetivo de este artículo es exponer los aspectos fundamentales de los plaguicidas relacionados con la salud humana y el ecosistema. Las temáticas abordadas incluyeron: la historia de su uso, la clasificación, los usos más frecuentes, los efectos sobre el medio ambiente y la salud humana y las alternativas de su empleo. Se ha acumulado suficiente evidencia de los riesgos que conlleva el uso excesivo e indiscriminado de los plaguicidas para la salud y el ambiente.(AU)

Ever since early stages in the development of mankind, there has been a need to fight pests affecting crops and products with the use of substances capable of eliminating them. A presentation is provided of the main effects of pesticides on human health and the ecosystem. The following topics are dealt with: history of the use of pesticides, classification, most common uses, effects on the environment and human health, and alternatives to their employment. Enough evidence has been gathered about the risks posed by the excessive, indiscriminate use of pesticides for health and the environment.(AU)

Efectos de los plaguicidas sobre el ambiente y la salud / Effects of pesticides on health and the environment

Desde las épocas tempranas del surgimiento y desarrollo del hombre, se tuvo la necesidad de combatir las plagas que afectaban sus cultivos y productos con el uso de sustancias capaces de eliminarlos. El objetivo de este artículo es exponer los aspectos fundamentales de los plaguicidas relacionados con la salud humana y el ecosistema. Las temáticas abordadas incluyeron: la historia de su uso, la clasificación, los usos más frecuentes, los efectos sobre el medio ambiente y la salud humana y las alternativas de su empleo. Se ha acumulado suficiente evidencia de los riesgos que conlleva el uso excesivo e indiscriminado de los plaguicidas para la salud y el ambiente(AU)

Ever since early stages in the development of mankind, there has been a need to fight pests affecting crops and products with the use of substances capable of eliminating them. A presentation is provided of the main effects of pesticides on human health and the ecosystem. The following topics are dealt with: history of the use of pesticides, classification, most common uses, effects on the environment and human health, and alternatives to their employment. Enough evidence has been gathered about the risks posed by the excessive, indiscriminate use of pesticides for health and the environment(AU)

Genetic parameters for five traits in Africanized honeybees using Bayesian inference.

Heritability and genetic correlations for honey (HP) and propolis production (PP), hygienic behavior (HB), syrup-collection rate (SCR) and percentage of mites on adult bees (PMAB) of a population of Africanized honeybees were estimated. Data from 110 queen bees over three generations were evaluated. Single and multi-trait models were analyzed by Bayesian Inference using MTGSAM. The localization of the hive was significant for SCR and HB and highly significant for PP. Season-year was highly significant only for SCR. The number of frames with bees was significant for HP and PP, including SCR. The heritability estimates were 0.16 for HP, 0.23 for SCR, 0.52 for HB, 0.66 for PP, and 0.13 for PMAB. The genetic correlations were positive among productive traits (PP, HP and SCR) and negative between productive traits and HB, except between PP and HB. Genetic correlations between PMAB and other traits, in general, were negative, except with PP. The study permitted to identify honeybees for improved propolis and honey production. Hygienic behavior may be improved as a consequence of selecting for improved propolis production. The rate of syrup consumption and propolis production may be included in a selection index to enhance honeybee traits.

Environmental factors affecting the concentration of phenolic compounds in Myrcia tomentosa leaves

Myrcia tomentosa (Aubl.) DC., Myrtaceae, found in Central Brazilian Cerrado and popularly known as "goiaba-brava", belongs to the Myrcia genus, which has several species with medicinal properties such as: hypoglycemic, diuretic, hypotensive, antidiarrheal, antimicrobial and antitumor. The present study aimed to analyzed the environmental influence on concentrations of phenolic metabolites in M. tomentosa leaves. Compounds assayed in the leaves were: total phenols, tannins by protein precipitation, hydrolysable tannins and total flavonoids and mineral nutrients, while soil fertility was also analyzed, all over during one year. The results were submitted to Pearson Correlation Analysis and stepwise Multiple Regression Analysis to investigate the relationship between phenolics and environment data. Analysis of variance and Cluster Analysis allowed indicated a high variability in samples from different sites. The results obtained suggests that content of phenolics from M. tomentosa leaves are influenced by environmental factors, particularly some foliar nutrients (N1, Ca1 and Mn1), soil nutrients (Ca s and Ks) and Rainfall.

Efecto ambiental de agroquímicos y maquinaria agrícola en cultivos transgénicos y convencionales de algodón / Environmental effects of agrochemicals and agricultural machinery in transgenic and conventional crops cotton

La producción de alimentos se basa en el uso de diferentes tecnologías agrícolas, que pueden derivar en conflictos entre medioambiente y agricultura. Es significativo estudiar el impacto ambiental de las nuevas tecnologías aplicadas a la agricultura, la más importante de las cuales es la transgénesis. Este trabajo se realizó en la zona algodonera del municipio del Espinal, departamento del Tolima, para la cosecha de algodón del primer semestre de 2009, usando las metodologías de Brookes y Barfoot (2006) y Kovach y colaboradores (1992). Se estudió el efecto ambiental de la aplicación de agroquímicos y el uso de maquinaria agrícola en cultivos de algodón transgénico y convencional. Se recogió información mediante encuestas en veinte fincas productoras de algodón. El análisis de las encuestas se realizó de forma descriptiva, determinando diferencias de tipo cuantitativo y cualitativo para los predios que utilizan la tecnología convencional o la tecnología transgénicas (doble gen, Bt/RR), para luego realizar una correlación con el “Enviromental Index Quotient” (EIQ). No se encontraron diferencias entre el EIQ de campo de las dos tecnologías, aunque la tecnología transgénica tiene ventajas ambientales en el control de algunas plagas de lepidópteros. En relación con el uso de maquinaria agrícola, se encontró que la tecnología convencional genera menor liberación de CO2, gas de efecto invernadero. La metodología de Brookes y Barfoot puede adaptarse para estudios comparativos de tecnologías agrícolas en países tropicales.

Food production is based on the use of various agricultural technologies, which can lead to conflicts between environment and agriculture. It is important to study the environmental impact of new technologies applied to agriculture, the most important of which is transgenesis. This work was carried out in the cotton belt of the town of Espinal, Tolima Department for the cotton crop in the first half of 2009, through methodologies Brookes & Barfoot (2006) and Kovach et al (1992). We studied the environmental impact of pesticide application and use of agricultural machinery for cultivation of transgenic and conventional cotton. Information was collected through surveys of 20 farms producing cotton. The analysis of the survey was conducted descriptively, by determining differences in quantitative and qualitative for the sites that use conventional technology, and transgenic (Bt gene and double RR / RR), and then make a correlation with the Environmental Index Quotient (EIQ). No differences were found between the fields EIQ the two technologies, although transgenic technology has environmental advantages in the control of some lepidopteran pests. In connection with the use of agricultural machinery, was found to conventional technology generates less release of CO2, greenhouse gas. The Brookes and Barfoot methodology could be adapted in comparative studies of agricultural technologies in tropical countries.

La Venganza de la Tierra / Planet Earth Revenge

El presente trabajo constituye una investigación referencial sobre los efectos que las acciones humanas causan a la tierra al utilizar inadecuadamente los recursos y las medidas que se deben tomar, con el objetivo de crear conciencia para evitar la venganza del planeta si colapsara como medio de sustento de los seres vivientes en ese proceso de acción antropogénica y reacción física del planeta “Gaia” (metáfora de Lovelock). Se describen las características físicas de Gaia. Se discuten los tres impactos ambientales globales: Efecto Invernadero, Calentamiento y Cambio Climático y Ruptura de la Capa de Ozono; y se esbozan las principales acciones institucionales e individuales para evitar/retardar la venganza de la tierra.

The present paper aims to describe the results of human actions on Planet Earth, due mainly to inadequate use of natural resources and discuss eventual measures that should be applied as to generate cousciousness and avoid the“planet´s revenge” as a collapse of its capabilities for human sustenance within the process of anthropogenic and physical reaction of the planet: Gaia (Lovelock´s metaphor). Physical characteristics of Gaia are described. The three main environnental global impacts are discussed: green house effect, global warning, climate change and ozone layer hole. Institutional and individual actions aimed to avoid/delay earth´s revenge are outlined.

Effects of environmental factors on multiple ovulation of zebu donors / Efeitos de fatores ambientes sobre a ovulação múltipla de doadoras zebuínas

Data on 1,294 superovulations of Brahman, Gyr, Guzerat and Nellore females were used to evaluate the effects of: breed; herd; year of birth; inbreeding coefficient and age at superovulation of the donor; month, season and year of superovulation; hormone source and dose; and the number of previous treatments on the superovulation results. Four data sets were considered to study the influence of donors elimination effect after each consecutive superovulation. Each one contained only records of the first, or of the two firsts, or three firsts or all superovulations. The average number of palpated corpora lutea per superovulation varied from 8.6 to 12.6. The total number of recovered structures and viable embryos ranged from 4.1 to 7.3 and from 7.3 to 13.8, respectively. Least squares means of the number of viable embryos at first superovulation were 7.8 ± 6.6 (Brahman), 3.7 ± 4.5 (Gyr), 6.1 ± 5.9 (Guzerat) and 5.2 ± 5.9 (Nellore). The numbers of viable embryos of the second and the third superovulations were not different from those of the first superovulation. The mean intervals between first and second superovulations were 91.8 days for Brahman, 101.8 days for Gyr, 93.1 days for Guzerat and 111.3 days for Nellore donors. Intervals between the second and the third superovulations were 134.3, 110.3, 116.4 and 108.5 days for Brahman, Gyr, Guzerat and Nellore donors, respectively. Effects of herd nested within breed and dose nested within hormone affected all traits. For some data sets, the effects of month and order of superovulation on three traits were importants. The maximum number of viable embryos was observed for 7-8 year-old donors. The best responses for corpora lutea and recovered structures were observed for 4-5 year-old donors. Inbreeding coefficient was positively associated to the number of recovered structures when data set on all superovulations was considered.(AU)

Informações de 1.294 superovulações de fêmeas das raças Brahman, Gir, Guzerá e Nelore foram estudados para avaliar a influência de: raça; rebanho; ano de nascimento, coeficiente de endogamia e idade da doadora; mês, estação e ano da superovulação; e dose do hormônio utilizado; e número de tratamentos prévios sobre o desempenho reprodutivo na Ovulação Múltipla e Transferência de Embriões (MOET). Quatro arquivos de dados foram usados para estudar o efeito de eliminação das doadoras após cada superovulação consecutiva, cada um contendo apenas registros da primeira, ou duas primeiras, ou três primeiras ou de todas as superovulações. O número médio de corpos lúteos palpados por superovulação variou de 8,6 a 12,6, e o número total de estruturas recuperadas e de embriões viáveis variou, respectivamente, de 4,1 a 7,3 e de 7,3 a 13,8. A média dos quadrados mínimos do número de embriões viáveis na primeira superovulação foi de 7,8 ± 6,6 (Brahman), 3,7 ± 4,5 (Gir), 6,1 ± 5,9 (Guzerá) e de 5,2 ± 5,9 (Nelore). As médias dos quadrados mínimos na segunda e terceira superovulações não foram diferentes daquelas obtidas na primeira superovulação. Os intervalos médios entre a primeira e a segunda superovulação foram de 91,8 dias (Brahman), 101,8 dias (Gir), 93,1 dias (Guzerá) e 111,3 dias (Nelore). Os intervalos médios entre a segunda e a terceira superovulações foram de, respectivamente, 134,3; 110,3; 116,.4 e 108,5 para doadoras Brahman, Gir, Guzerá e Nelore. Os efeitos de rebanho aninhado dentro de raça e dose aninhada dentro de hormônio influenciaram as três características. Em alguns arquivos, mês e ordem da superovulação foram importantes fontes de variação para as três características. O número máximo de embriões viáveis foi observado em doadoras entre sete e oito anos de idade. Os maiores números de corpos lúteos e de estruturas recuperadas foram observados em doadoras entre quatro e cinco anos de idade.(AU)

Estudo dos efeitos genéticos e de meio ambiente sobre a produção de leite e gordura da raça holandês no estado do Rio Grande do Sul

In order to evaluate the impact of environmental and genetics effects upon production traits, information used in this study was obtained from 4085 lactations of Holstein cows, daughters of 172 sires, out of 42 herds, from 1988-1994, whose farms were located in four different geographical regions, in the southern, Brazil. The environmental effects were analysed by the Least square analyses. The statistical model included fixed effects (region, herds by region, lactation order and season of the year) and dependent variables milk yield (MY) and fat yield (FY). Means, standard deviation and variations coefficients for MY and FY were respectively, 5672±1513kg, 27% and 188±57kg, 30%. There was significant effect to all variables studied. The genetic parameters were estimate using the MTDFREML Program (BOLDMAN et al., 1995) in a model using the fixed effects of region, herd, lactation order and year-season and random effects of the animal on milk and fat yield. The heritability estimates for milk yield (MY) and fat yield (FY) ajusted to 305 days of lactation were 0.19 and 0.17, respectively. The genetic correlation coefficient for MY x FY was 0.95.

Com o objetivo de identificar alguns fatores de ambiente capazes de alterar o desempenho produtivo da raça Holandês e estimar parâmetros genéticos foram analisados os registros de produção, fornecidos pela Associação de Criadores de Gado Holandês do Rio Grande do Sul, de 4085 lactações, de 2295 vacas, filhas de 172 touros, distribuídas em 42 rebanhos em quatro diferentes regiões do Estado do Rio Grande do Sul, no período de 1988 a 1994. As médias, desvios-padrão e coeficientes de variação de produção de leite (PL) e produção de gordura (PG) foram, respectivamente, 5672±1513kg, 27% e 188±57kg, 30%. Os fatores ambientais foram analisados incluindo no modelo, como variáveis independentes, os efeitos de região, rebanho dentro da região, ordem de lactação e ano de parição e como variáveis dependentes, as produções de leite e gordura ajustadas para 305 dias. A análise de variância efetuada pelo método dos quadrados mínimos, revelou a significância de todas as variáveis independentes incluídas no modelo sobre as características de produção estudadas. Os parâmetros genéticos foram estimados utilizando-se o programa MTDFREML de BOLDMAN et al. (1995), através do método da máxima verossimilhança restrita (REML). Adotando-se um modelo animal multivariado o efeito aleatório de animal e os efeitos fixos de região, rebanho, ano-época de parição e ordem de lactação. Os coeficientes de herdabilidade estimados para PL e PG em 305 dias de lactação foram 0,19 e 0,17, respectivamente. A correlação gentica entre PL e PG foi estimada em 0,95.