Tissue-specific differences in Ca2+ sensitivity of the mitochondrial permeability transition pore (PTP). Experiments in male rat liver and heart.

Permeability transition pore (PTP) opening dissipates ion and electron gradients across the internal mitochondrial membrane (IMM), including excess Ca2+ in the mitochondrial matrix. After opening, immediate PTP closure must follow to prevent outer membrane disruption, loss of cytochrome c, and eventual apoptosis. Flickering, defined as the rapid alternative opening/closing of PTP, has been reported in heart, which undergoes frequent, large variations in Ca2+. In contrast, in tissues that undergo depolarization events less often, such as the liver, PTP would not need to be as dynamic and thus these tissues would not be as resistant to stress. To evaluate this idea, it was decided to follow the reversibility of the permeability transition (PT) in isolated murine mitochondria from two different tissues: the very dynamic heart, and the liver, which suffers depolarizations less frequently. It was observed that in heart mitochondria PT remained reversible for longer periods and at higher Ca2+ loads than in liver mitochondria. In all cases, Ca2+ uptake was inhibited by ruthenium red and PT was delayed by Cyclosporine A. Characterization of this phenomenon included measuring the rate of oxygen consumption, organelle swelling and Ca2+ uptake and retention. Results strongly suggest that there are tissue-specific differences in PTP physiology, as it resists many more Ca2+ additions before opening in a highly active organ such as the heart than in an organ that seldom suffers Ca2+ loading, such as the liver.

Discovery of Novel miRNAs in Colorectal Cancer: Potential Biological Roles and Clinical Utility.

Deregulated miRNAs are associated with colorectal cancer (CRC), with alterations depending on the tumor location. Novel tissue-specific miRNAs have been identified in different tumors and are associated with cancer. We used miRMaster to identify novel miRNAs in CRC from the TCGA and GEO data (discovery and validation groups). We used TCGA data from five tissues to analyze miRNA tissue specificity. miRDB was used to predict miRNA targets, and the UCSC Xena Browser was used to evaluate target expression. After successive analyses, we identified 15 novel miRNAs with the same expression patterns in CRC in both the discovery and validation groups. Four molecules (nov-miR-13844-5p, nov-miR-7154-5p, nov-miR-5035-3p, and nov-miR-590-5p) were differentially expressed in proximal and distal CRC. The nov-miR-3345-5p and nov-miR-13172-3p, which are upregulated in tumors, are only expressed in colorectal tissues. These molecules have been linked to a worse prognosis in right-sided colon and rectal carcinomas. An analysis revealed an association between eight novel miRNAs and 81 targets, mostly cancer-related genes, with varying expression based on tumor location. These findings provide new miRNAs with potential biological relevance, molecular biomarkers, and therapeutic targets for CRC treatment.

Tissue Specificity of DNA Damage and Repair.

DNA is a remarkable biochemical macromolecule tasked with storing the genetic information that instructs life on planet Earth. However, its inherent chemical instability within the cellular milieu is incompatible with the accurate transmission of genetic information to subsequent generations. Therefore, biochemical pathways that continuously survey and repair DNA are essential to sustain life, and the fundamental mechanisms by which different DNA lesions are repaired have remained well conserved throughout evolution. Nonetheless, the emergence of multicellular organisms led to profound differences in cellular context and physiology, leading to large variations in the predominant sources of DNA damage between different cell types and in the relative contribution of different DNA repair pathways toward genome maintenance in different tissues. While we continue to make large strides into understanding how individual DNA repair mechanisms operate on a molecular level, much less attention is given to these cell type-specific differences. This short review aims to provide a broad overview of DNA damage and repair mechanisms to nonspecialists and to highlight some fundamental open questions in tissue and cell-type-specificity of these processes, which may have profound implications for our understanding of important pathophysiological processes such as cancer, neurodegeneration, and aging.

Genome-wide identification, characterization, and functional analysis of lncRNAs in Hevea brasiliensis.

Natural rubber (NR) is an essential industrial raw material widely used in our life. Hevea brasiliensis (Reyan7-33-97) is an economic plant producing natural rubber. Long non-coding RNAs (lncRNAs) are emerging as crucial regulators in numerous biological processes while the characterization and analysis of lncRNAs in Hevea brasiliensis are still largely unrevealed. We integrated the transcriptome datasets from multiple tissues to identify rubber lncRNAs. As a result, 12,029 lncRNAs were found and characterized with notably distinctive features such as longer exon, lower expression levels and GC content, and more tissue specificity in comparison with mRNAs. We discovered thousands of tissue-specific lncRNAs in rubber root, latex, bark, leaf, flower, and seed tissues. The functional enrichment result reveals that tissue-specific lncRNAs are potentially referred to particular functions of tissues, while the non-tissue specific is related to the translation and metabolic processes. In the present study, a comprehensive lncRNA dataset was identified and its functional profile in Hevea brasiliensis was explored, which provides an annotation resource and important clues to understand the biological functions of lncRNAs in Hevea brasiliensis.

The tonoplast intrinsic aquaporin (TIP) subfamily of Eucalyptus grandis: Characterization of EgTIP2, a root-specific and osmotic stress-responsive gene.

Aquaporins have important roles in various physiological processes in plants, including growth, development and adaptation to stress. In this study, a gene encoding a root-specific tonoplast intrinsic aquaporin (TIP) from Eucalyptus grandis (named EgTIP2) was investigated. The root-specific expression of EgTIP2 was validated over a panel of five eucalyptus organ/tissues. In eucalyptus roots, EgTIP2 expression was significantly induced by osmotic stress imposed by PEG treatment. Histochemical analysis of transgenic tobacco lines (Nicotiana tabacum SR1) harboring an EgTIP2 promoter:GUS reporter cassette revealed major GUS staining in the vasculature and in root tips. Consistent with its osmotic-stress inducible expression in eucalyptus, EgTIP2 promoter activity was up-regulated by mannitol treatment, but was down-regulated by abscisic acid. Taken together, these results suggest that EgTIP2 might be involved in eucalyptus response to drought. Additional searches in the eucalyptus genome revealed the presence of four additional putative TIP coding genes, which could be individually assigned to the classical TIP1-5 groups.

Altered vascular reactivity induced by malaria parasites / Reactividad vascular alterada inducida por los parásitos de la malaria

OBJECTIVES: In this study, we have examined the possibility that there is altered vascular reactivity due to the direct interaction between parasitized erythrocytes and vascular endothelial cells. METHOD: Ring preparations of rat aorta were studied using standard in vitro techniques, the rings were mounted in 20 ml organ baths containing PSS under an initial load of 1g, maintained at 37ºC atpH 7.4 and isometric contractions were recorded electronically. Rings were allowed 90 minutes to equilibrate before the commencement of the various protocols: * Dose responses to phenylephrine (PE) and other vasoactive agents (high-K+) * Acetylcholine (Ach) -induced relaxation in phenylephrine-contracted rings (pre-contraction was induced by EC70 concentration of phenylephrine) * Ach-induced relaxation in PE-precontracted, endothelium-denuded rings * Also, relaxation responses to acetylcholine was investigated through application ofa single (EC7o) concentration of acetylcholine in rings exposed to blood with varying concentrations and dilutions ofparasitized blood and varying durations ofexposure. RESULTS: Incubation with parasitized blood resulted in a significant increase in maximum contractile response to phenylephrine in the rat aortic rings (p < 0.05) but no effect to the base line. Analysis of the whole dose-response curve (using paired t-test) showed a significant left-ward shift following the addition of parasitized blood (p < 0.05), EC70 (M) values increasing from 7 x 10-7 to 5 x 10-6M. Following exposure to parasitized blood, the magnitude ofAch-induced relaxation responses reduced signi ficantlyfrom 73 ± 3.6 to 24.75 ± 7.25% in rat aortic rings (p < 0.05). Ach relaxations were significantly enhanced (p < 0.05) at 5-minute exposure; however at longer durations, Ach-relaxations were variable and inconsistent. The lesser the dilution, due to increased volume of parasitized blood, the lesser the relaxation response. Following endothelium removal, there was a marked impairment in endothelium-dependent relaxation responses to ACh in both the control and incubated vessels. Exposure to parasitized blood did not significantly alter contractile responses induced by potassium depolarization. CONCLUSIONS: This gives evidence in support of an endothelium-dependent action of malaria parasites as vascular effects ofmalaria parasites are mediated, at least in part, via endothelium-dependent mechanism(s).

OBJETIVO: En este estudio, hemos examinado la posibilidad de que exista una reactividad vascular alterada debido a la interacción directa entre los eritrocitos parasitados y las células endoteliales vasculares. MÉTODO: Se estudiaron preparaciones de anillo de aorta de rata usando técnicas in vitro estándar. Los anillos fueron montados en baños de órgano de 20 ml que contenían solución salina fisiológica (SSF) con una carga inicial de 1g, mantenida a 37ºC con un pH de 7.4, y las contracciones isométricas fueron registradas electrónicamente. A los anillos se les dio un tiempo de 90 minutos para permitir que se equilibraran, antes del comienzo de los varios protocolos. * Respuestas a la dosis de fenilefrina (FE) y otros agentes vasoactivos (K+ alto) * Relajación inducida mediante acetilcolina (Ac) en los anillos contraídos con fenilefrina (la precontracción fue inducida mediante una concentración EC70 de fenilefrina) * Relajación inducida mediante Ac en anillos despojados de endotelio. Pre-contraídos con FE. * También, se investigaron las respuestas de relajación a la acetilcolina a través de la aplicación de una sola concentración (EC70) de acetilcolina en anillos expuestos a la sangre con diversas concentraciones y diluciones de sangre parasitada y distintas duraciones de exposición. RESULTADOS: La incubación con sangre parasitada tuvo como resultado un aumento significativo en la respuesta contráctil máxima a la fenilefrina en los anillos aórticos de las ratas (p < 0.05) pero ningún efecto a la línea de base. El análisis de toda la curva de respuesta a la dosis (usando la prueba t pareada) mostró un desplazamiento significativo hacia la izquierda tras la adición de sangre parasitada (p < 0.05), EC70 (M), aumentado los valores de 7 x 10-7 a 5 x 10-6M. Tras la exposición a la sangre parasitada, la magnitud de las respuestas a la relajación inducida por Ac se redujo significativamente de 73 ± 3.6 a 24.75 ± 7.25% en los anillos aórticos de ratas (p < 0.05). Las relajaciones por Ac mejoraron significativamente (p < 0.05) a los 5 minutos de exposición. Sin embargo, a duraciones más largas, las relajaciones por Ac fueron variables e inconstantes. Mientras menor era la dilución, debido al aumento de volumen de la sangre parasitada, menor era la respuesta de relajación. Una vez retirado el endotelio, se producía un marcado deterioro en las respuestas de relajación dependiente del endotelio, ante el Ac, tanto en los recipientes de control como en los encubados. La exposición a la sangre parasitada no alteró de manera significativa las respuestas contráctiles inducidas por la despolarización del potasio. CONCLUSIONES: Esto provee evidencias en apoyo a una acción dependiente del epitelio, por parte de los parásitos de la malaria, por cuanto los efectos vasculares de los parásitos de la malaria se hallan mediados, al menos en parte, por los mecanismos dependientes del endotelio.