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1.
J Med Chem ; 67(10): 7954-7972, 2024 May 23.
Article in English | MEDLINE | ID: mdl-38703119

ABSTRACT

To discover potential sterol 14α-demethylase (CYP51) inhibitors, thirty-four unreported 4H-pyrano[3,2-c]pyridine derivatives were designed and synthesized. The assay results indicated that most compounds displayed significant fungicidal activity against Sclerotinia sclerotiorum, Colletotrichum lagenarium, Botrytis cinerea, Penicillium digitatum, and Fusarium oxysporum at 16 µg/mL. The half maximal effective concentration (EC50) values of compounds 7a, 7b, and 7f against B. cinerea were 0.326, 0.530, and 0.610, respectively. Namely, they had better antifungal activity than epoxiconazole (EC50 = 0.670 µg/mL). Meanwhile, their half maximal inhibitory concentration (IC50) values against CYP51 were 0.377, 0.611, and 0.748 µg/mL, respectively, representing that they also possessed better inhibitory activities than epoxiconazole (IC50 = 0.802 µg/mL). The fluorescent quenching tests of proteins showed that 7a and 7b had similar quenching patterns to epoxiconazole. The molecular dynamics simulations indicated that the binding free energy of 7a and epoxiconazole to CYP51 was -35.4 and -27.6 kcal/mol, respectively.


Subject(s)
14-alpha Demethylase Inhibitors , Antifungal Agents , Drug Design , Molecular Dynamics Simulation , Pyridines , Sterol 14-Demethylase , 14-alpha Demethylase Inhibitors/pharmacology , 14-alpha Demethylase Inhibitors/chemical synthesis , 14-alpha Demethylase Inhibitors/chemistry , Antifungal Agents/pharmacology , Antifungal Agents/chemical synthesis , Antifungal Agents/chemistry , Pyridines/pharmacology , Pyridines/chemical synthesis , Pyridines/chemistry , Sterol 14-Demethylase/metabolism , Sterol 14-Demethylase/chemistry , Structure-Activity Relationship , Microbial Sensitivity Tests , Fusarium/drug effects , Penicillium , Ascomycota/drug effects , Colletotrichum/drug effects , Botrytis/drug effects , Molecular Structure , Molecular Docking Simulation
2.
J Med Chem ; 67(10): 8420-8444, 2024 May 23.
Article in English | MEDLINE | ID: mdl-38718180

ABSTRACT

Faced with increasingly serious fungal infections and drug resistance issues, three different series of novel dual-target (programmed death ligand 1/14 α-demethylase) compounds were constructed through the fragment combination pathway in the study. Their chemical structures were synthesized, characterized, and evaluated. Among them, preferred compounds 10c-1, 17b-1, and 18b-2 could efficiently exert their antifungal and antidrug-resistant fungal ability through blocking ergosterol biosynthesis, inducing the upregulation of reactive oxygen species level, and triggering apoptosis. Especially, compound 18b-2 exhibited the synergistic function of fungal inhibition and immune activation. Moreover, the covalent organic framework carrier was also generated based on the acidic microenvironment of fungal infection to improve the bioavailability and targeting of preferred compounds; this finally accelerated the body's recovery rate.


Subject(s)
Antifungal Agents , Antifungal Agents/pharmacology , Antifungal Agents/chemical synthesis , Antifungal Agents/chemistry , Humans , Animals , Microbial Sensitivity Tests , Structure-Activity Relationship , Reactive Oxygen Species/metabolism , Apoptosis/drug effects , 14-alpha Demethylase Inhibitors/pharmacology , 14-alpha Demethylase Inhibitors/chemistry , 14-alpha Demethylase Inhibitors/chemical synthesis , Mycoses/drug therapy , Mice , Candida albicans/drug effects , Ergosterol/metabolism , Molecular Structure
3.
J Agric Food Chem ; 72(21): 12260-12269, 2024 May 29.
Article in English | MEDLINE | ID: mdl-38759097

ABSTRACT

Thirty-four new pyrido[4,3-d]pyrimidine analogs were designed, synthesized, and characterized. The crystal structures for compounds 2c and 4f were measured by means of X-ray diffraction of single crystals. The bioassay results showed that most target compounds exhibited good fungicidal activities against Pyricularia oryzae, Rhizoctonia cerealis, Sclerotinia sclerotiorum, Botrytis cinerea, and Penicillium italicum at 16 µg/mL. Compounds 2l, 2m, 4f, and 4g possessed better fungicidal activities than the commercial fungicide epoxiconazole against B. cinerea. Their half maximal effective concentration (EC50) values were 0.191, 0.487, 0.369, 0.586, and 0.670 µg/mL, respectively. Furthermore, the inhibitory activities of the bioactive compounds were determined against sterol 14α-demethylase (CYP51). The results displayed that they had prominent activities. Compounds 2l, 2m, 4f, and 4g also showed better inhibitory activities than epoxiconazole against CYP51. Their half maximal inhibitory concentration (IC50) values were 0.219, 0.602, 0.422, 0.726, and 0.802 µg/mL, respectively. The results of molecular dynamics (MD) simulations exhibited that compounds 2l and 4f possessed a stronger affinity to CYP51 than epoxiconazole.


Subject(s)
14-alpha Demethylase Inhibitors , Ascomycota , Drug Design , Fungal Proteins , Fungicides, Industrial , Pyrimidines , Rhizoctonia , Sterol 14-Demethylase , Fungicides, Industrial/pharmacology , Fungicides, Industrial/chemistry , Fungicides, Industrial/chemical synthesis , Pyrimidines/chemistry , Pyrimidines/pharmacology , Pyrimidines/chemical synthesis , Sterol 14-Demethylase/chemistry , Sterol 14-Demethylase/metabolism , Structure-Activity Relationship , Rhizoctonia/drug effects , 14-alpha Demethylase Inhibitors/pharmacology , 14-alpha Demethylase Inhibitors/chemistry , 14-alpha Demethylase Inhibitors/chemical synthesis , Fungal Proteins/chemistry , Fungal Proteins/antagonists & inhibitors , Ascomycota/drug effects , Ascomycota/enzymology , Models, Molecular , Botrytis/drug effects , Penicillium/drug effects , Penicillium/enzymology , Molecular Structure , Molecular Docking Simulation
4.
J Med Chem ; 67(9): 7443-7457, 2024 May 09.
Article in English | MEDLINE | ID: mdl-38683753

ABSTRACT

Acanthamoeba are free-living pathogenic protozoa that cause blinding keratitis, disseminated infection, and granulomatous amebic encephalitis, which is generally fatal. The development of efficient and safe drugs is a critical unmet need. Acanthamoeba sterol 14α-demethylase (CYP51) is an essential enzyme of the sterol biosynthetic pathway. Repurposing antifungal azoles for amoebic infections has been reported, but their inhibitory effects on Acanthamoeba CYP51 enzymatic activity have not been studied. Here, we report catalytic properties, inhibition, and structural characterization of CYP51 from Acanthamoeba castellanii. The enzyme displays a 100-fold substrate preference for obtusifoliol over lanosterol, supporting the plant-like cycloartenol-based pathway in the pathogen. The strongest inhibition was observed with voriconazole (1 h IC50 0.45 µM), VT1598 (0.25 µM), and VT1161 (0.20 µM). The crystal structures of A. castellanii CYP51 with bound VT1161 (2.24 Å) and without an inhibitor (1.95 Å), presented here, can be used in the development of azole-based scaffolds to achieve optimal amoebicidal effectiveness.


Subject(s)
14-alpha Demethylase Inhibitors , Sterol 14-Demethylase , Sterol 14-Demethylase/metabolism , Sterol 14-Demethylase/chemistry , 14-alpha Demethylase Inhibitors/pharmacology , 14-alpha Demethylase Inhibitors/chemistry , 14-alpha Demethylase Inhibitors/chemical synthesis , Structure-Activity Relationship , Acanthamoeba/enzymology , Acanthamoeba/drug effects , Acanthamoeba castellanii/enzymology , Acanthamoeba castellanii/drug effects , Crystallography, X-Ray , Antiprotozoal Agents/pharmacology , Antiprotozoal Agents/chemistry , Antiprotozoal Agents/chemical synthesis , Models, Molecular , Molecular Structure
5.
Eur J Med Chem ; 227: 113950, 2022 Jan 05.
Article in English | MEDLINE | ID: mdl-34731761

ABSTRACT

Ergosterol exert the important function in maintaining the fluidity and osmotic pressure of fungal cells, and its key biosynthesis enzymes (Squalene epoxidase, SE; 14 α-demethylase, CYP51) displayed the obvious synergistic effects. Therefore, we expected to discover the novel antifungal compounds with dual-target (SE/CYP51) inhibitory activity. In the progress, we screened the different kinds of potent fragments based on the dual-target (CYP51, SE) features, and the method of fragment-based drug discovery (FBDD) was used to guide the construction of three different series of benzodioxane compounds. Subsequently, their chemical structures were synthesized and evaluated. These compounds displayed the obvious biological activity against the pathogenic fungal strains. Notably, target compounds 10a-2 and 22a-2 possessed the excellent broad-spectrum anti-fungal activity (MIC50, 0.125-2.0 µg/mL) and the activity against drug-resistant strains (MIC50, 0.5-2.0 µg/mL). Preliminary mechanism studies have confirmed that these compounds effectively inhibited the dual-target (SE/CYP51) activity, they could cause fungal rupture and death by blocking the bio-synthetic pathway of ergosterol. Further experiments discovered that compounds 10a-2 and 22a-2 also maintained a certain of anti-fungal effect in vivo. In summary, this study not only provided the new dual-target drug design strategy and method, but also discover the potential antifungal compounds.


Subject(s)
14-alpha Demethylase Inhibitors/pharmacology , Antifungal Agents/pharmacology , Benzene Derivatives/pharmacology , Candida/drug effects , Dioxanes/pharmacology , Sterol 14-Demethylase/metabolism , 14-alpha Demethylase Inhibitors/chemical synthesis , 14-alpha Demethylase Inhibitors/chemistry , Antifungal Agents/chemical synthesis , Antifungal Agents/chemistry , Benzene Derivatives/chemical synthesis , Benzene Derivatives/chemistry , Candida/metabolism , Dioxanes/chemical synthesis , Dioxanes/chemistry , Dose-Response Relationship, Drug , Microbial Sensitivity Tests , Models, Molecular , Molecular Structure , Structure-Activity Relationship
6.
Eur J Med Chem ; 221: 113524, 2021 Oct 05.
Article in English | MEDLINE | ID: mdl-33992927

ABSTRACT

Invasive fungal infections remain a challenge due to lack of effective antifungal agents and serious drug resistance. Discovery of antifungal agents with novel antifungal mechanism is important and urgent. Previously, we designed the first CYP51/HDAC dual inhibitors with potent activity against resistant Candida albicans infections. To better understand the antifungal spectrum and synergistic mechanism, herein new CYP51/HDAC dual inhibitors were designed which showed potent in vitro and in vivo antifungal activity against C. neoformans and C. tropicalis infections. Antifungal mechanism studies revealed that the CYP51/HDAC dual inhibitors acted by inhibiting various virulence factors of C. tropicalis and C. neoformans and down-regulating resistance-associated genes. This study highlights the potential of CYP51/HDAC dual inhibitors as a promising strategy for the discovery of novel broad-spectrum antifungal agents.


Subject(s)
14-alpha Demethylase Inhibitors/pharmacology , Antifungal Agents/pharmacology , Candidiasis, Cutaneous/drug therapy , Cryptococcosis/drug therapy , Histone Deacetylase Inhibitors/pharmacology , 14-alpha Demethylase Inhibitors/chemical synthesis , 14-alpha Demethylase Inhibitors/chemistry , Antifungal Agents/chemical synthesis , Antifungal Agents/chemistry , Candida tropicalis/drug effects , Candida tropicalis/metabolism , Candidiasis, Cutaneous/metabolism , Cryptococcosis/metabolism , Cryptococcus neoformans/drug effects , Cryptococcus neoformans/metabolism , Cytochrome P450 Family 51/antagonists & inhibitors , Cytochrome P450 Family 51/metabolism , Dose-Response Relationship, Drug , Drug Resistance, Fungal/drug effects , Histone Deacetylase Inhibitors/chemical synthesis , Histone Deacetylase Inhibitors/chemistry , Histone Deacetylases/metabolism , Microbial Sensitivity Tests , Molecular Structure , Structure-Activity Relationship
7.
Molecules ; 26(7)2021 Apr 05.
Article in English | MEDLINE | ID: mdl-33916423

ABSTRACT

A total of fourteen pyrazoline derivatives were synthesized through cyclo-condensation reactions by chalcone derivatives with different types of semicarbazide. These compounds were characterized by IR, 1D-NMR (1H, 13C and Distortionless Enhancement by Polarization Transfer - DEPT-135) and 2D-NMR (COSY, HSQC and HMBC) as well as mass spectroscopy analysis (HRMS). The synthesized compounds were tested for their antituberculosis activity against Mycobacterium tuberculosis H37Ra in vitro. Based on this activity, compound 4a showed the most potent inhibitory activity, with a minimum inhibitory concentration (MIC) value of 17 µM. In addition, six other synthesized compounds, 5a and 5c-5g, exhibited moderate activity, with MIC ranges between 60 µM to 140 µM. Compound 4a showed good bactericidal activity with a minimum bactericidal concentration (MBC) value of 34 µM against Mycobacterium tuberculosis H37Ra. Molecular docking studies for compound 4a on alpha-sterol demethylase was done to understand and explore ligand-receptor interactions, and to hypothesize potential refinements for the compound.


Subject(s)
14-alpha Demethylase Inhibitors/chemical synthesis , Antitubercular Agents/chemical synthesis , Bacterial Proteins/antagonists & inhibitors , Pyrazoles/chemical synthesis , Semicarbazides/chemical synthesis , Sterol 14-Demethylase/chemistry , 14-alpha Demethylase Inhibitors/pharmacology , Antitubercular Agents/pharmacology , Bacterial Proteins/chemistry , Bacterial Proteins/metabolism , Catalytic Domain , Fluconazole/chemistry , Fluconazole/pharmacology , Isoniazid/chemistry , Isoniazid/pharmacology , Microbial Sensitivity Tests , Molecular Docking Simulation , Mycobacterium tuberculosis/drug effects , Mycobacterium tuberculosis/enzymology , Mycobacterium tuberculosis/growth & development , Protein Binding , Protein Conformation , Protein Interaction Domains and Motifs , Pyrazoles/pharmacology , Semicarbazides/pharmacology , Sterol 14-Demethylase/metabolism , Structural Homology, Protein , Thermodynamics
8.
Curr Comput Aided Drug Des ; 17(2): 235-243, 2021.
Article in English | MEDLINE | ID: mdl-32065093

ABSTRACT

OBJECTIVE: Azole antifungal agents, which are widely used as antifungal antibiotics, inhibit cytochrome P450 sterol 14α-demethylase (CYP51). Nearly all azole antifungal agents are Nsubstituted azoles. In addition, an azolylphenalkyl pharmacophore is uniquely shared by all azole antifungals. Due to the importance of nitrogen atom of azoles (N-3 of imidazole and N-4 of triazole) in coordination with heme in the binding site of the enzyme, here a group of N- un-substituted azoles in which both nitrogen are un-substituted was reported. MATERIALS AND METHODS: Designed compounds were synthesized by the reaction of imidazole-4- carboxaldehyde with appropriate arylamines and subsequently reduced to desired amine derivatives. Antifungal activity against Candida albicans and Saccharomyces cervisiae was done using a broth micro-dilution assay. Docking studies were done using AutoDock. RESULTS: Antimicrobial evaluation revealed that some of these compounds exhibited moderate antimicrobial activities against tested pathogenic fungi, wherein compounds 3, 7, and 8 were potent. Docking studies propose that all of the prepared azoles interacted with 14α-DM, wherein azoleheme coordination played the main role in drug-receptor interaction. CONCLUSION: Our results offer some useful references for molecular design performance or modification of this series of compounds as a lead compound to discover new and potent antimicrobial agents.


Subject(s)
14-alpha Demethylase Inhibitors/chemical synthesis , Antifungal Agents/chemical synthesis , Azoles/chemical synthesis , Drug Design/methods , Molecular Docking Simulation/methods , 14-alpha Demethylase Inhibitors/pharmacology , Antifungal Agents/pharmacology , Azoles/pharmacology , Candida albicans/drug effects , Candida albicans/physiology , Humans , Microbial Sensitivity Tests/methods , Molecular Structure
9.
Curr Top Med Chem ; 21(6): 462-506, 2021.
Article in English | MEDLINE | ID: mdl-33319673

ABSTRACT

1,2,3-Triazole, a five-membered heterocyclic nucleus, is widely recognized as a key chromophore of great value in medicinal chemistry for delivering compounds possessing innumerable biological activities, including antimicrobial, antitubercular, antidiabetic, antiviral, antitumor, antioxidants, and anti-inflammatory activities. Mainly, in the past years, diverse conjugates carrying this biologically valuable core have been reported due to their attractive fungicidal potential and potent effects on various infective targets. Hence, hybridization of 1,2,3-triazole with other antimicrobial pharmacophores appears to be a judicious strategy to develop new effective anti-fungal candidates to combat the emergence of drug-sensitive and drug-resistant infectious diseases. Thus, the current review highlights the recent advances of this promising category of 1,2,3-triazole-containing hybrids incorporating diverse varieties of bioactive heterocycles such as conozole, coumarin, imidazole, benzimidazole, pyrazole, indole, oxindole, chromene, pyrane, quinazoline, chalcone, isoflavone, carbohydrates, and amides. It underlies their inhibition behavior against a wide array of infectious fungal species during 2015-2020.


Subject(s)
14-alpha Demethylase Inhibitors/pharmacology , Antifungal Agents/pharmacology , Candida/drug effects , Sterol 14-Demethylase/metabolism , Triazoles/pharmacology , 14-alpha Demethylase Inhibitors/chemical synthesis , 14-alpha Demethylase Inhibitors/chemistry , Antifungal Agents/chemical synthesis , Antifungal Agents/chemistry , Candida/enzymology , Microbial Sensitivity Tests , Molecular Conformation , Triazoles/chemical synthesis , Triazoles/chemistry
10.
Bioorg Chem ; 105: 104387, 2020 12.
Article in English | MEDLINE | ID: mdl-33130344

ABSTRACT

7H-Benzo[7,8]chromeno[2,3-d]pyrimidin-9(8H)-amine (6a,b) have been synthesized via hydrazinolysis of the imidates (5a,b). Polysubstituted chromenotriazolopyrimidine (7a-j), (12a,b) and Schiff base (8a,b) derivatives have also been prepared. The new heterocyclic derivatives were affirmed by spectral data. The target compounds have been screened for antibacterial and antifungal activity. Compounds 6a,b and 7a-c, g,h displayed the most favorable antimicrobial activities in resemblance to the reference antimicrobial agents by IZ range over 24 mm. In addition, MIC, MBC and MFC were also tested and screen for most active compound 6a by 6.25 µg/mL showing bactericidal effect. SAR study revealed that the antimicrobial vitality of the target compounds was safely influenced by the lipophilicity substituents and the calculated log P value. The potent compounds were subjected into in vitro enzyme screening (14α-Demethylase and DNA Gyrase) against both interesting targets and showed good inhibitory profile. Molecular modeling analyses were introduced and discussed focusing on the docking of active compounds into two essential targets, and their ADMET properties were studied.


Subject(s)
14-alpha Demethylase Inhibitors/pharmacology , Anti-Bacterial Agents/pharmacology , Antifungal Agents/pharmacology , Benzopyrans/pharmacology , Topoisomerase II Inhibitors/pharmacology , 14-alpha Demethylase Inhibitors/chemical synthesis , 14-alpha Demethylase Inhibitors/chemistry , Anti-Bacterial Agents/chemical synthesis , Anti-Bacterial Agents/chemistry , Antifungal Agents/chemical synthesis , Antifungal Agents/chemistry , Aspergillus/drug effects , Benzopyrans/chemical synthesis , Benzopyrans/chemistry , Candida albicans/drug effects , DNA Gyrase/metabolism , Dose-Response Relationship, Drug , Gram-Positive Bacteria/drug effects , Microbial Sensitivity Tests , Molecular Docking Simulation , Molecular Structure , Sterol 14-Demethylase/metabolism , Structure-Activity Relationship , Topoisomerase II Inhibitors/chemical synthesis , Topoisomerase II Inhibitors/chemistry
11.
Carbohydr Res ; 496: 108130, 2020 Oct.
Article in English | MEDLINE | ID: mdl-32863019

ABSTRACT

Direct unimolar one-step valeroylation of methyl α-d-mannopyranoside (MDM) furnished mainly 6-O-valeroate. However, similar reaction catalyzed by DMAP resulted 3,6-di-O-valeroate (21%) and 6-O-valeroate (47%) indicating reactivity sequence as 6-OH>3-OH>2-OH,4-OH. To get potential antimicrobial agents, 6-O-valeroate was converted into four 2,3,4-di-O-acyl esters, and 3,6-di-O-valeroate was converted into 2,4-di-O-acetate. Direct tetra-O-valeroylation of MDM gave a mixture of 2,3,4,6-tetra-O-valeroate and 2,3,6-tri-O-valeroate indicating that the C2-OH is more reactive than the equatorial C4-OH. The activity spectra analysis along with in vitro antimicrobial evaluation clearly indicated that these novel MDM esters had better antifungal activities over antibacterial agents. In this connection, molecular docking indicated that these MDM esters acted as competitive inhibitors of sterol 14α-demethylase (CYP51), an essential enzyme for clinical target to cure several infectious diseases. Furthermore, pharmacokinetic studies revealed that these MDM esters may be worth considering as potent candidates for oral and topical administration. Structure activity relationship (SAR) affirmed that saturated valeric chain (C5) in combination with caprylic (C8) chains was more promising CYP51 inhibitor over conventional antifungal antibiotics.


Subject(s)
14-alpha Demethylase Inhibitors/pharmacology , 14-alpha Demethylase Inhibitors/pharmacokinetics , Esters/chemistry , Mannose/pharmacology , Mannose/pharmacokinetics , Molecular Docking Simulation , Sterol 14-Demethylase/metabolism , 14-alpha Demethylase Inhibitors/chemical synthesis , 14-alpha Demethylase Inhibitors/metabolism , Caco-2 Cells , Chemistry Techniques, Synthetic , Humans , Mannose/chemical synthesis , Mannose/metabolism , Protein Conformation , Sterol 14-Demethylase/chemistry , Structure-Activity Relationship
12.
Eur J Med Chem ; 205: 112645, 2020 Nov 01.
Article in English | MEDLINE | ID: mdl-32791399

ABSTRACT

Ergosterol as the core component of fungal cell membrane plays a key role in maintaining cell morphology and permeability. The squalenee epoxidase (SE) and 14-demethylase (CYP51) are the important rate-limiting enzymes for ergosterol synthesis. In the study, these active fragments, which is derived from the structural groups of the common antifungal agents, were docked into the active sites of dual targets (SE, CYP51), respectively. Some of active fragments with the matching MCSS_Score values were selected and connected to construct three different series of novel arylalkene-amide derivatives as dual-target (SE, CYP51) antifungal inhibitors. Subsequently, these compounds were further synthesized, and their bioactivity was evaluated. Most of compounds showed a certain degree of antifungal activity in vitro. It was worth noting that the target compounds 17a and 25a with excellent antifungal activity (0.125-4 µg/mL) can inhibit the fluconazole-resistant Candida Strain 17#, CaR, 632, and 901 in the range of MIC values (4-8 µg/mL). Furthermore, their molecular mechanism, structural stability and low toxicity were further confirmed. The molecular docking and ADMET properties were predicted to guide the subsequent optimization of target compounds.


Subject(s)
Alkenes/chemistry , Amides/chemical synthesis , Amides/pharmacology , Antifungal Agents/chemical synthesis , Antifungal Agents/pharmacology , Drug Design , 14-alpha Demethylase Inhibitors/chemical synthesis , 14-alpha Demethylase Inhibitors/chemistry , 14-alpha Demethylase Inhibitors/pharmacology , Amides/chemistry , Antifungal Agents/chemistry , Candida/drug effects , Candida/enzymology , Chemistry Techniques, Synthetic , Microbial Sensitivity Tests , Molecular Docking Simulation , Molecular Targeted Therapy , Protein Conformation , Squalene Monooxygenase/antagonists & inhibitors , Squalene Monooxygenase/chemistry , Squalene Monooxygenase/metabolism , Sterol 14-Demethylase
13.
Biomolecules ; 10(8)2020 07 24.
Article in English | MEDLINE | ID: mdl-32722158

ABSTRACT

Candida species cause an opportunistic yeast infection called Candidiasis, which is responsible for more than 50,000 deaths every year around the world. Effective treatments against candidiasis caused by non-albicans Candida species such as C. glabrata, C. parapsilosis, C. aureus, and C.krusei are limited due to severe resistance to conventional antifungal drugs. Natural drimane sesquiterpenoids have shown promising antifungal properties against Candida yeast and have emerged as valuable candidates for developing new candidiasis therapies. In this work, we isolated isodrimeninol (C1) from barks of Drimys winteri and used it as starting material for the hemi-synthesis of four sesquiterpenoids by oxidation with pyridinium chlorochromate (PCC). The structure of the products (C2, C3, C4, and C5) was elucidated by 1D and 2D NMR spectroscopy resulting in C4 being a novel compound. Antifungal activity assays against C. albicans, C. glabrata, and C. krusei revealed that C4 exhibited an increased activity (IC50 of 75 µg/mL) compared to C1 (IC50 of 125 µg/mL) in all yeast strains. The antifungal activity of C1 and C4 was rationalized in terms of their capability to inhibit lanosterol 14-alpha demethylase using molecular docking, molecular dynamics simulations, and MM/GBSA binding free energy calculations. In silico analysis revealed that C1 and C4 bind to the outermost region of the catalytic site of 14-alpha demethylase and block the entrance of lanosterol (LAN) to the catalytic pocket. Binding free energy estimates suggested that C4 forms a more stable complex with the enzyme than C1, in agreement with the experimental evidence. Based on this new approach it is possible to design new drimane-type sesquiterpenoids for the control of Candida species as inhibitors of 14-alpha demethylase.


Subject(s)
14-alpha Demethylase Inhibitors/chemistry , Candida/growth & development , Polycyclic Sesquiterpenes/chemistry , Pyridinium Compounds/chemistry , Sesquiterpenes/chemistry , Sterol 14-Demethylase/chemistry , 14-alpha Demethylase Inhibitors/chemical synthesis , 14-alpha Demethylase Inhibitors/pharmacology , Antifungal Agents/chemical synthesis , Antifungal Agents/chemistry , Antifungal Agents/pharmacology , Candida/classification , Candida/drug effects , Catalytic Domain , Humans , Magnetic Resonance Spectroscopy , Molecular Docking Simulation , Molecular Structure , Oxidation-Reduction , Polycyclic Sesquiterpenes/chemical synthesis , Polycyclic Sesquiterpenes/pharmacology , Protein Domains , Pyridinium Compounds/metabolism , Sesquiterpenes/chemical synthesis , Sesquiterpenes/pharmacology , Sterol 14-Demethylase/metabolism
14.
ChemMedChem ; 15(14): 1294-1309, 2020 07 20.
Article in English | MEDLINE | ID: mdl-32459374

ABSTRACT

Fungal infections are a global issue affecting over 150 million people worldwide annually, with 750 000 of these caused by invasive Candida infections. Azole drugs are the frontline treatment against fungal infections; however, resistance to current azole antifungals in C. albicans poses a threat to public health. Two series of novel azole derivatives, short and extended derivatives, have been designed, synthesised and investigated for CYP51 inhibitory activity, binding affinity and minimum inhibitory concentration (MIC) against C. albicans strains. The short derivatives were more potent against the C. albicans strains (e. g., MIC 2-(4-chlorophenyl)-N-(2,4-dichlorobenzyl)-3-(1H-imidazol-1-yl)propanamide (5 f) <0.03 µg/mL, N-(4-((4-chlorophenyl)sulfonamido)benzyl)-2-phenyl-3-(1H-1,2,4-triazol-1-yl)propanamide (12 c), 1 µg/mL, fluconazole 0.125 µg/mL) but both displayed comparable enzyme binding and inhibition (5 f Kd 62±17 nM, IC50 0.46 µM; 12 c Kd 43±18 nM, IC50 0.33 µM, fluconazole Kd 41±13 nM, IC50 0.31 µM, posaconazole Kd 43±11 nM, IC50 0.2 µM). The short series had poor selectivity for CaCYP51 over the human homologue, whereas the selectivity of the extended series, for example, compound 12 c, was higher (21.5-fold) than posaconazole (4.7-fold) based on Kd values, although posaconazole was more selective (615-fold) than 12 c (461-fold) based on IC50 values. Based on inhibitory activity and selectivity profile, the extended series are the better of the two series for further development.


Subject(s)
14-alpha Demethylase Inhibitors/pharmacology , Amides/pharmacology , Antifungal Agents/pharmacology , Candida albicans/drug effects , Small Molecule Libraries/pharmacology , Sterol 14-Demethylase/metabolism , 14-alpha Demethylase Inhibitors/chemical synthesis , 14-alpha Demethylase Inhibitors/chemistry , Amides/chemical synthesis , Amides/chemistry , Antifungal Agents/chemical synthesis , Antifungal Agents/chemistry , Candida albicans/enzymology , Dose-Response Relationship, Drug , Microbial Sensitivity Tests , Models, Molecular , Molecular Structure , Small Molecule Libraries/chemical synthesis , Small Molecule Libraries/chemistry , Structure-Activity Relationship
15.
J Mycol Med ; 30(1): 100910, 2020 Apr.
Article in English | MEDLINE | ID: mdl-31806380

ABSTRACT

The fungal diseases represent an increasing global health burden and have transformed from a rare curiosity to the leading cause of human mortality. The present manuscript reports the antifungal potential of two novel compounds possessing a carbohydrate and an imidazole moiety. Antifungal susceptibility test determined the growth inhibition potential of the synthesized compounds against Aspergillus niger 9689 and it was observed that compounds D and E gave an antifungal inhibitory index of 66.66 and 56.67% respectively. Further, ultra-structure analysis of the treated fungal mycelia through scanning electron microscope (SEM) and confocal microscopy indicated significant membrane permeability and disintegration of fungal cell membrane, thus highlighting the probable role of the synthesized compounds as inhibitors of fungal lanosterol 14α-demethylase. In silico studies corroborated with the in-vitro results, as the synthesized compounds interacted with the critical amino acids present at the active site of the fungal enzyme (lanosterol 14α-demethylase).


Subject(s)
Antifungal Agents , Carbohydrates/chemistry , Cell Membrane/drug effects , Imidazoles/chemistry , 14-alpha Demethylase Inhibitors/chemical synthesis , 14-alpha Demethylase Inhibitors/chemistry , 14-alpha Demethylase Inhibitors/pharmacology , Antifungal Agents/chemical synthesis , Antifungal Agents/chemistry , Antifungal Agents/pharmacology , Aspergillus niger/drug effects , Aspergillus niger/ultrastructure , Carbohydrate Sequence/physiology , Cell Membrane Permeability/drug effects , Humans , Imidazoles/chemical synthesis , Imidazoles/pharmacology , Microbial Sensitivity Tests , Models, Molecular , Molecular Docking Simulation , Molecular Structure , Sterol 14-Demethylase/metabolism , Structure-Activity Relationship
16.
J Med Chem ; 62(22): 10391-10401, 2019 11 27.
Article in English | MEDLINE | ID: mdl-31663733

ABSTRACT

Sterol 14α-demethylases (CYP51) are the cytochrome P450 enzymes required for biosynthesis of sterols in eukaryotes, the major targets for antifungal agents and prospective targets for treatment of protozoan infections. Human CYP51 could be and, for a while, was considered as a potential target for cholesterol-lowering drugs (the role that is now played by statins, which are also in clinical trials for cancer) but revealed high intrinsic resistance to inhibition. While microbial CYP51 enzymes are often inhibited stoichiometrically and functionally irreversibly, no strong inhibitors have been identified for human CYP51. In this study, we used comparative structure/functional analysis of CYP51 orthologs from different biological kingdoms and employed site-directed mutagenesis to elucidate the molecular basis for the resistance of the human enzyme to inhibition and also designed, synthesized, and characterized new compounds. Two of them inhibit human CYP51 functionally irreversibly with their potency approaching the potencies of azole drugs currently used to inhibit microbial CYP51.


Subject(s)
14-alpha Demethylase Inhibitors/chemistry , 14-alpha Demethylase Inhibitors/pharmacology , Sterol 14-Demethylase/chemistry , Sterol 14-Demethylase/genetics , 14-alpha Demethylase Inhibitors/chemical synthesis , Animals , Catalytic Domain , Crystallography, X-Ray , Drug Design , Humans , Molecular Structure , Mutagenesis, Site-Directed , Protozoan Proteins/antagonists & inhibitors , Sterol 14-Demethylase/metabolism
17.
Chem Biol Drug Des ; 94(5): 1944-1955, 2019 09.
Article in English | MEDLINE | ID: mdl-31260179

ABSTRACT

Systemic Candida infections pose a serious public health problem with high morbidity and mortality. C. albicans is the major pathogen identified in candidiasis; however, non-albicans Candida spp. with antifungal resistance are now more prevalent. Azoles are first-choice antifungal drugs for candidiasis; however, they are ineffective for certain infections caused by the resistant strains. Azoles block ergosterol synthesis by inhibiting fungal CYP51, which leads to disruption of fungal membrane permeability. In this study, we screened for antifungal activity of an in-house azole library of 65 compounds to identify hit matter followed by a molecular modeling study for their CYP51 inhibition mechanism. Antifungal susceptibility tests against standard Candida spp. including C. albicans revealed derivatives 12 and 13 as highly active. Furthermore, they showed potent antibiofilm activity as well as neglectable cytotoxicity in a mouse fibroblast assay. According to molecular docking studies, 12 and 13 have the necessary binding characteristics for effective inhibition of CYP51. Finally, molecular dynamics simulations of the C. albicans CYP51 (CACYP51) homology model's catalytic site complexed with 13 were stable demonstrating excellent binding.


Subject(s)
14-alpha Demethylase Inhibitors/chemical synthesis , Antifungal Agents/chemical synthesis , Azoles/chemical synthesis , Cytochrome P450 Family 51/antagonists & inhibitors , Fungal Proteins/antagonists & inhibitors , Small Molecule Libraries/chemical synthesis , 14-alpha Demethylase Inhibitors/pharmacology , Animals , Antifungal Agents/pharmacology , Azoles/pharmacology , Candida/drug effects , Candidiasis/drug therapy , Catalytic Domain , Cell Line , Cell Survival/drug effects , Computer Simulation , Drug Evaluation, Preclinical , Fibroblasts/cytology , Humans , Mice , Models, Molecular , Molecular Structure , Protein Binding , Small Molecule Libraries/pharmacology , Structure-Activity Relationship
18.
Article in English | MEDLINE | ID: mdl-31020935

ABSTRACT

BACKGROUND: With the increasing resistance and side effects caused due to antifungal agents there is an urgent need for the new potent antifungal agents with low toxicity profile. Imidazoles have been used against fungal infections since long time. Further, our previous studies demonstrated that mercaptoimidazoles possessed good antifungal potency. AIM AND OBJECTIVE: This study was aimed to study the antifungal potency of new series of 2- mercaptoimidazoles. MATERIALS AND METHODS: Eighteen new 2-mercaptoimidazoles containing substituted phenyl group were synthesized and structures of the synthesized compounds were characterized by spectral studies. The synthesized compounds were screened for their antifungal potency. Compound 2-(1-(3-hydroxyphenyl)-2- mercapto-1H-imidazol-4-yl)phenol was found to be the most potent compound among all synthesized compounds against tested fungal strains. Moreover, all the synthesized compounds were further subjected to molecular docking study for the inhibition of enzyme 14α-demethylase. RESULTS: The in-silico molecular docking study results showed that all the synthesized compounds have minimum binding energy and good affinity for the active site and may be considered as good inhibitor of 14α-demethylase. CONCLUSION: 2-mercaptoimidazoles may be used as potential lead molecules as 14α-demethylase inhibitors.


Subject(s)
Antifungal Agents/chemical synthesis , Antifungal Agents/pharmacology , Ethylenethiourea/analogs & derivatives , Molecular Docking Simulation , Solid-Phase Synthesis Techniques/methods , 14-alpha Demethylase Inhibitors/chemical synthesis , 14-alpha Demethylase Inhibitors/pharmacology , Candida albicans/drug effects , Ethylenethiourea/chemical synthesis , Ethylenethiourea/chemistry , Ethylenethiourea/pharmacology , Microbial Sensitivity Tests
19.
Molecules ; 23(7)2018 Jul 17.
Article in English | MEDLINE | ID: mdl-30018257

ABSTRACT

Sterol 14α-demethylase (SDM) is essential for sterol biosynthesis and is the primary molecular target for clinical and agricultural antifungals. SDM has been demonstrated to be a valid drug target for antiprotozoal therapies, and much research has been focused on using SDM inhibitors to treat neglected tropical diseases such as human African trypanosomiasis (HAT), Chagas disease, and leishmaniasis. Sterol C24-methyltransferase (24-SMT) introduces the C24-methyl group of ergosterol and is an enzyme found in pathogenic fungi and protozoa but is absent from animals. This difference in sterol metabolism has the potential to be exploited in the development of selective drugs that specifically target 24-SMT of invasive fungi or protozoa without adversely affecting the human or animal host. The synthesis and biological activity of SDM and 24-SMT inhibitors are reviewed herein.


Subject(s)
14-alpha Demethylase Inhibitors , Fungal Proteins , Methyltransferases , Mycoses , Protozoan Infections , Protozoan Proteins , Sterol 14-Demethylase , 14-alpha Demethylase Inhibitors/chemical synthesis , 14-alpha Demethylase Inhibitors/chemistry , 14-alpha Demethylase Inhibitors/therapeutic use , Animals , Fungal Proteins/antagonists & inhibitors , Fungal Proteins/chemistry , Fungal Proteins/metabolism , Humans , Methyltransferases/antagonists & inhibitors , Methyltransferases/chemistry , Methyltransferases/metabolism , Mycoses/drug therapy , Mycoses/enzymology , Protozoan Infections/drug therapy , Protozoan Infections/enzymology , Protozoan Proteins/antagonists & inhibitors , Protozoan Proteins/chemistry , Protozoan Proteins/metabolism , Sterol 14-Demethylase/chemistry , Sterol 14-Demethylase/metabolism
20.
J Med Chem ; 61(13): 5679-5691, 2018 07 12.
Article in English | MEDLINE | ID: mdl-29894182

ABSTRACT

Because of the increase in the number of immunocompromised patients, the incidence of invasive fungal infections is growing, but the treatment efficiency remains unacceptably low. The most potent clinical systemic antifungals (azoles) are the derivatives of two scaffolds: ketoconazole and fluconazole. Being the safest antifungal drugs, they still have shortcomings, mainly because of pharmacokinetics and resistance. Here, we report the successful use of the target fungal enzyme, sterol 14α-demethylase (CYP51), for structure-based design of novel antifungal drug candidates by minor modifications of VNI [( R)- N-(1-(2,4-dichlorophenyl)-2-(1 H-imidazol-1-yl)ethyl)-4-(5-phenyl-1,3,4-oxadiazol-2-yl)benzamide)], an inhibitor of protozoan CYP51 that cures Chagas disease. The synthesis of fungi-oriented VNI derivatives, analysis of their potencies to inhibit CYP51s from two major fungal pathogens ( Aspergillus fumigatus and Candida albicans), microsomal stability, effects in fungal cells, and structural characterization of A. fumigatus CYP51 in complexes with the most potent compound are described, offering a new antifungal drug scaffold and outlining directions for its further optimization.


Subject(s)
Aspergillus fumigatus/drug effects , Candida albicans/drug effects , Drug Design , Imidazoles/chemical synthesis , Imidazoles/pharmacology , Sterol 14-Demethylase/metabolism , 14-alpha Demethylase Inhibitors/chemical synthesis , 14-alpha Demethylase Inhibitors/chemistry , 14-alpha Demethylase Inhibitors/pharmacology , Antifungal Agents/chemical synthesis , Antifungal Agents/chemistry , Antifungal Agents/pharmacology , Aspergillus fumigatus/enzymology , Candida albicans/enzymology , Catalytic Domain , Chemistry Techniques, Synthetic , Crystallography, X-Ray , Imidazoles/chemistry , Ligands , Models, Molecular , Sterol 14-Demethylase/chemistry
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