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1.
Biochem Biophys Res Commun ; 471(3): 380-5, 2016 Mar 11.
Article in English | MEDLINE | ID: mdl-26872430

ABSTRACT

Genome-wide association studies identified ADAMTS7 as a risk locus for coronary artery disease. In carotid arteries of rats, neointima formation after balloon-mediated injury goes along with enhanced Adamts7 expression. Vice versa, Adamts7-deficient mice display reduced neointima formation following vascular injury. Although a causal link between ADAMTS7 and coronary artery disease remains to be proven, inhibition of ADAMTS7 represents a potential new target for intervention in this disease. ADAMTS7, a member of the 'a disintegrin and metalloproteinase with thrombospondin motifs' (ADAMTS) family of proteins, contains a catalytic zinc ion in the binding site of its metalloproteinase domain. The structure of ADAMTS7 and its inhibitors are unknown. In this study, we used in silico methods, including homology modeling and pharmacophore modeling, to analyze the ADAMTS7 metalloproteinase domain, particularly its binding site. The results revealed structural and sequence differences relative to the binding sites of the other ADAMTS proteins; these non-conserved regions represent potential binding regions for selective ADAMTS7 inhibitors. The main contribution of this study is the proposal of a pharmacophore for ADAMTS7. The characterization of the ADAMTS7 binding site and definition of a pharmacophore are the first step toward developing a new therapeutic target for coronary artery disease.


Subject(s)
ADAM Proteins/chemistry , ADAM Proteins/ultrastructure , Models, Chemical , Molecular Docking Simulation , Sequence Analysis, Protein/methods , ADAMTS7 Protein , Amino Acid Sequence , Binding Sites , Conserved Sequence , Enzyme Activation , Enzyme Inhibitors/chemistry , Molecular Sequence Data , Protein Binding , Protein Structure, Tertiary
2.
J Thromb Haemost ; 13(11): 2063-75, 2015 Nov.
Article in English | MEDLINE | ID: mdl-26391536

ABSTRACT

BACKGROUND: Recently, conformational activation of ADAMTS-13 was identified. This mechanism showed the evolution from a condensed conformation, in which the proximal MDTCS and distal T2-CUB2 domains are in close contact with each other, to an activated, open structure due to binding with von Willebrand factor (VWF). OBJECTIVES: Identification of cryptic epitope/exosite exposure after conformational activation and of sites of flexibility in ADAMTS-13. METHODS: The activating effect of 25 anti-T2-CUB2 antibodies was studied in the FRETS-VWF73 and the vortex assay. Cryptic epitope/exosite exposure was determined with ELISA and VWF binding assay. The molecular basis for flexibility was hypothesized through rapid automatic detection and alignment of repeats (RADAR) analysis, tested with ELISA using deletion variants and visualized using electron microscopy. RESULTS: Eleven activating anti-ADAMTS-13 antibodies, directed against the T5-CUB2 domains, were identified in the FRETS-VWF73 assay. RADAR analysis identified three linker regions in the distal domains. Interestingly, identification of an antibody recognizing a cryptic epitope in the metalloprotease domain confirmed the contribution of these linker regions to conformational activation of the enzyme. The proof of flexibility around both the T2 and metalloprotease domains, as shown by by electron microscopy, further supported this contribution. In addition, cryptic epitope exposure was identified in the distal domains, because activating anti-T2-CUB2 antibodies increased the binding to folded VWF up to ~3-fold. CONCLUSION: Conformational activation of ADAMTS-13 leads to cryptic epitope/exosite exposure in both proximal and distal domains, subsequently inducing increased activity. Furthermore, three linker regions in the distal domains are responsible for flexibility and enable the interaction between the proximal and the T8-CUB2 domains.


Subject(s)
ADAM Proteins/chemistry , ADAM Proteins/immunology , ADAM Proteins/metabolism , ADAM Proteins/ultrastructure , ADAMTS13 Protein , Allosteric Regulation , Allosteric Site , Amino Acid Sequence , Antibodies, Monoclonal/immunology , Antigen-Antibody Reactions , Catalysis , Consensus Sequence , Enzyme Activation , Epitopes/chemistry , Epitopes/immunology , Humans , Microscopy, Electron , Molecular Sequence Data , Protein Binding , Protein Conformation , Protein Folding , Protein Processing, Post-Translational , Protein Structure, Tertiary , Sequence Alignment , Sequence Homology, Amino Acid , Thrombospondin 1/chemistry , von Willebrand Factor/metabolism
3.
Anal Chem ; 87(20): 10299-305, 2015 Oct 20.
Article in English | MEDLINE | ID: mdl-26369694

ABSTRACT

Vital functions of mammals are only possible due to the behavior of blood to coagulate most efficiently in vessels with particularly high wall shear rates. This is caused by the functional changes of the von Willebrand Factor (VWF), which mediates coagulation of blood platelets (primary hemostasis) especially when it is stretched under shear stress. Our data show that shear stretching also affects other functions of VWF: Using a customized device to simulate shear conditions and to conserve the VWF molecules in their unstable, elongated conformation, we visualize at single molecule level by AFM that VWF is preferentially cleaved by the protease ADAMTS13 at higher shear rates. In contrast to this high shear-rate-selective behavior, VWF binds FVIII more effectively only below a critical shear rate of ∼30.000 s(-1), indicating that under harsh shear conditions FVIII is released from its carrier protein. This may be required to facilitate delivery of FVIII locally to promote secondary hemostasis.


Subject(s)
ADAM Proteins/chemistry , Factor VIII/chemistry , Microscopy, Atomic Force , von Willebrand Factor/chemistry , ADAM Proteins/metabolism , ADAM Proteins/ultrastructure , ADAMTS13 Protein , Factor VIII/metabolism , Factor VIII/ultrastructure , Humans , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism , Recombinant Proteins/ultrastructure , von Willebrand Factor/metabolism , von Willebrand Factor/ultrastructure
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