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1.
Shock ; 61(3): 433-441, 2024 Mar 01.
Article in English | MEDLINE | ID: mdl-38300834

ABSTRACT

ABSTRACT: Background: Treatment of acute compartment syndrome (ACS)-induced skeletal muscle injury remains a challenge. Previous studies have shown that octanoic acid is a promising treatment for ACS owing to its potential ability to regulate metabolic/epigenetic pathways in ischemic injury. The present study was designed to investigate the efficacy and underlying mechanism of octanoic acid in ACS-induced skeletal muscle injury. Methods: In this study, we established a saline infusion ACS rat model. Subsequently, we assessed the protective effects of sodium octanoate (NaO, sodium salt of octanoic acid) on ACS-induced skeletal muscle injury. Afterward, the level of acetyl-coenzyme A and histone acetylation in the skeletal muscle tissue were quantified. Moreover, we investigated the activation of the AMP-activated protein kinas pathway and the occurrence of mitophagy in the skeletal muscle tissue. Lastly, we scrutinized the expression of proteins associated with mitochondrial dynamics in the skeletal muscle tissue. Results: The administration of NaO attenuated muscle inflammation, alleviating oxidative stress and muscle edema. Moreover, NaO treatment enhanced muscle blood perfusion, leading to the inhibition of apoptosis-related skeletal muscle cell death after ACS. In addition, NaO demonstrated the ability to halt skeletal muscle fibrosis and enhance the functional recovery of muscle post-ACS. Further analysis indicates that NaO treatment increases the acetyl-CoA level in muscle and the process of histone acetylation by acetyl-CoA. Lastly, we found NaO treatment exerts a stimulatory impact on the activation of the AMPK pathway, thus promoting mitophagy and improving mitochondrial dynamics. Conclusion: Our findings indicate that octanoic acid may ameliorate skeletal muscle injury induced by ACS. Its protective effects may be attributed to the promotion of acetyl-CoA synthesis and histone acetylation within the muscular tissue, as well as its activation of the AMPK-related mitophagy pathway.


Subject(s)
AMP-Activated Protein Kinases , Caprylates , Compartment Syndromes , Rats , Animals , Acetyl Coenzyme A/metabolism , Acetyl Coenzyme A/pharmacology , AMP-Activated Protein Kinases/metabolism , Histones/metabolism , Mitophagy , Muscle, Skeletal/metabolism , Compartment Syndromes/metabolism
2.
Food Microbiol ; 115: 104322, 2023 Oct.
Article in English | MEDLINE | ID: mdl-37567632

ABSTRACT

Zygosaccharomyces rouxii has excellent fermentation performance and good tolerance to osmotic stress. Acetyl-CoA is a crucial intermediate precursor in the central carbon metabolic pathway of yeast. This study investigated the effect of engineering acetyl-CoA metabolism on the membrane functionality and stress tolerance of yeast. Firstly, exogenous supplementation of acetyl-CoA improved the biomass and the ability of unsaturated fatty acid synthesis of Z. rouxii under salt stress. Q-PCR results suggested that the gene ACSS (coding acetyl-CoA synthetase) was significantly up-expressed. Subsequently, the gene ACSS from Z. rouxii was transformed and heterologously expressed in S. cerevisiae. The recombinant cells exhibited better multiple stress (salt, acid, heat, and cold) tolerance, higher fatty acid contents, membrane integrity, and fluidity. Our findings may provide a suitable means to enhance the stress tolerance and fermentation efficiency of yeast under harsh fermentation environments.


Subject(s)
Saccharomyces cerevisiae , Zygosaccharomyces , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/metabolism , Acetyl Coenzyme A/metabolism , Acetyl Coenzyme A/pharmacology , Zygosaccharomyces/genetics , Fermentation
3.
Acta Biochim Biophys Sin (Shanghai) ; 55(9): 1467-1478, 2023 Jun 13.
Article in English | MEDLINE | ID: mdl-37310146

ABSTRACT

The emergence of anti-EGFR therapy has revolutionized the treatment of colorectal cancer (CRC). However, not all patients respond consistently well. Therefore, it is imperative to conduct further research to identify the molecular mechanisms underlying the development of cetuximab resistance in CRC. In this study, we find that the expressions of many metabolism-related genes are downregulated in cetuximab-resistant CRC cells compared to their sensitive counterparts. Specifically, acetyl-CoA acyltransferase 2 (ACAA2), a key enzyme in fatty acid metabolism, is downregulated during the development of cetuximab resistance. Silencing of ACAA2 promotes proliferation and increases cetuximab tolerance in CRC cells, while overexpression of ACAA2 exerts the opposite effect. RTK-Kras signaling might contribute to the downregulation of ACAA2 expression in CRC, and ACAA2 predicts CRC prognosis in patients with Kras mutations. Collectively, our data suggest that modulating ACAA2 expression contributes to secondary cetuximab resistance in Kras wild-type CRC patients. ACAA2 expression is related to Kras mutation and demonstrates a prognostic role in CRC patients with Kras mutation. Thus, ACAA2 is a potential target in CRC with Kras mutation.


Subject(s)
Antineoplastic Agents , Colorectal Neoplasms , Humans , Acetyl Coenzyme A/genetics , Acetyl Coenzyme A/metabolism , Acetyl Coenzyme A/pharmacology , Antineoplastic Agents/pharmacology , Antineoplastic Agents/therapeutic use , Cetuximab/pharmacology , Colorectal Neoplasms/drug therapy , Colorectal Neoplasms/genetics , Colorectal Neoplasms/metabolism , Drug Resistance, Neoplasm/genetics , Mutation , Proto-Oncogene Proteins p21(ras)/genetics , Signal Transduction
4.
J Exp Clin Cancer Res ; 42(1): 108, 2023 May 01.
Article in English | MEDLINE | ID: mdl-37122003

ABSTRACT

BACKGROUND: Tumor cells display augmented capability to maintain endoplasmic reticulum (ER) homeostasis and hijack ER stress pathway for malignant phenotypes under microenvironmental stimuli. Metabolic reprogramming is a well-known hallmark for tumor cells to provide specific adaptive traits to the microenvironmental alterations. However, it's unknown how tumor cells orchestrate metabolic reprogramming and tumor progression in response to ER stress. Herein, we aimed to explore the pivotal roles of SEC63-mediated metabolic remodeling in hepatocellular carcinoma (HCC) cell metastasis after ER stress. METHODS: The expression levels of SEC63 in HCC tissues and adjacent non-cancerous tissues were determined by immunohistochemistry and western blot. The regulatory roles of SEC63 in HCC metastasis were investigated both in vitro and in vivo by RNA-sequencing, metabolites detection, immunofluorescence, and transwell migration/invasion analyses. GST pull-down, immunoprecipitation/mass spectrometry and in vivo ubiquitination/phosphorylation assay were conducted to elucidate the underlying molecular mechanisms. RESULTS: We identified SEC63 as a new regulator of HCC cell metabolism. Upon ER stress, the phosphorylation of SEC63 at T537 by IRE1α pathway contributed to SEC63 activation. Then, the stability of ACLY was upregulated by SEC63 to increase the supply of acetyl-CoA and lipid biosynthesis, which are beneficial for improving ER capacity. Meanwhile, SEC63 also entered into nucleus for increasing nuclear acetyl-CoA production to upregulate unfolded protein response targets to improve ER homeostasis. Importantly, SEC63 coordinated with ACLY to epigenetically modulate expression of Snail1 in the nucleus. Consequently, SEC63 promoted HCC cell metastasis and these effects were reversed by ACLY inhibition. Clinically, SEC63 expression was significantly upregulated in HCC tissue specimens and was positively correlated with ACLY expression. Importantly, high expression of SEC63 predicted unfavorable prognosis of HCC patients. CONCLUSIONS: Our findings revealed that SEC63-mediated metabolic reprogramming plays important roles in keeping ER homeostasis upon stimuli in HCC cells. Meanwhile, SEC63 coordinates with ACLY to upregulate the expression of Snail1, which further promotes HCC metastasis. Metastasis is crucial for helping cancer cells seek new settlements upon microenvironmental stimuli. Taken together, our findings highlight a cancer selective adaption to ER stress as well as reveal the potential roles of the IRE1α-SEC63-ACLY axis in HCC treatment.


Subject(s)
Carcinoma, Hepatocellular , Liver Neoplasms , Humans , Carcinoma, Hepatocellular/pathology , Liver Neoplasms/pathology , Endoribonucleases/genetics , Acetyl Coenzyme A/genetics , Acetyl Coenzyme A/metabolism , Acetyl Coenzyme A/pharmacology , Cell Line, Tumor , Protein Serine-Threonine Kinases/genetics , Protein Serine-Threonine Kinases/metabolism , Endoplasmic Reticulum Stress , Gene Expression Regulation, Neoplastic
5.
Food Chem Toxicol ; 175: 113737, 2023 May.
Article in English | MEDLINE | ID: mdl-36944396

ABSTRACT

Obesity caused by endocrine disruptors (EDCs) has become a hot topic threatening human health. Recently, Nanoselenium Siraitia grosvenorii (NSG) has been shown to have potential health-modulating uses. Based on the results of 16S rRNA sequencing and metabolomics analysis, NSG has the unique function of improving gut microbiota and inhibiting obesity. Specifically, NSG can enhance gut microbiota diversity and change their composition. A significant positive correlation exists between the liver change in lysine and the high-importance dominant species ([Ruminococcus]_gnavus, Alistipes_finegoldii, etc.). NSG metabolites analysis showed that the lysine level increased by 44.45% and showed a significantly negatively correlated with (TG, TC, Leptin, etc.). Significantly, NSG reduces the degradation of lysine metabolism in the liver and inhibits fatty acid ß-oxidation. In addition, NSG decreased Acetyl-CoA levels by 24% and regulated the downregulation of TCA genes (CS, Ogdh, Fh1, and Mdh2) and the upregulation of ketone body production genes (BDH1). NSG may have a positive effect on obesity by reducing the participation of Acetyl-CoA in the TCA cycle pathway and enhancing the ketogenic conversion of Acetyl-CoA. In conclusion, the results of this study may provide a new dietary intervention strategy for preventing endocrine disruptor-induced obesity.


Subject(s)
Endocrine Disruptors , Gastrointestinal Microbiome , Humans , Endocrine Disruptors/toxicity , Lysine , RNA, Ribosomal, 16S/genetics , Acetyl Coenzyme A/metabolism , Acetyl Coenzyme A/pharmacology , Obesity/chemically induced , Obesity/drug therapy , Metabolic Networks and Pathways , Diet, High-Fat
6.
Cancer Commun (Lond) ; 42(8): 716-749, 2022 08.
Article in English | MEDLINE | ID: mdl-35838183

ABSTRACT

BACKGROUND: Autophagy is elevated in metastatic tumors and is often associated with active epithelial-to-mesenchymal transition (EMT). However, the extent to which EMT is dependent on autophagy is largely unknown. This study aimed to identify the mechanisms by which autophagy facilitates EMT. METHODS: We employed a liquid chromatography-based metabolomic approach with kirsten rat sarcoma viral oncogene (KRAS) and liver kinase B1 (LKB1) gene co-mutated (KL) cells that represent an autophagy/EMT-coactivated invasive lung cancer subtype for the identification of metabolites linked to autophagy-driven EMT activation. Molecular mechanisms of autophagy-driven EMT activation were further investigated by quantitative real-time polymerase chain reaction (qRT-PCR), Western blotting analysis, immunoprecipitation, immunofluorescence staining, and metabolite assays. The effects of chemical and genetic perturbations on autophagic flux were assessed by two orthogonal approaches: microtubule-associated protein 1A/1B-light chain 3 (LC3) turnover analysis by Western blotting and monomeric red fluorescent protein-green fluorescent protein (mRFP-GFP)-LC3 tandem fluorescent protein quenching assay. Transcription factor EB (TFEB) activity was measured by coordinated lysosomal expression and regulation (CLEAR) motif-driven luciferase reporter assay. Experimental metastasis (tail vein injection) mouse models were used to evaluate the impact of calcium/calmodulin-dependent protein kinase kinase 2 (CAMKK2) or ATP citrate lyase (ACLY) inhibitors on lung metastasis using IVIS luciferase imaging system. RESULTS: We found that autophagy in KL cancer cells increased acetyl-coenzyme A (acetyl-CoA), which facilitated the acetylation and stabilization of the EMT-inducing transcription factor Snail. The autophagy/acetyl-CoA/acetyl-Snail axis was further validated in tumor tissues and in autophagy-activated pancreatic cancer cells. TFEB acetylation in KL cancer cells sustained pro-metastatic autophagy in a mammalian target of rapamycin complex 1 (mTORC1)-independent manner. Pharmacological inhibition of this axis via CAMKK2 inhibitors or ACLY inhibitors consistently reduced the metastatic capacity of KL cancer cells in vivo. CONCLUSIONS: This study demonstrates that autophagy-derived acetyl-CoA promotes Snail acetylation and thereby facilitates invasion and metastasis of KRAS-LKB1 co-mutated lung cancer cells and that inhibition of the autophagy/acetyl-CoA/acetyl-Snail axis using CAMKK2 or ACLY inhibitors could be a potential therapeutic strategy to suppress metastasis of KL lung cancer.


Subject(s)
AMP-Activated Protein Kinases/metabolism , Lung Neoplasms , Proto-Oncogene Proteins p21(ras) , Snail Family Transcription Factors/metabolism , Acetyl Coenzyme A/pharmacology , Acetylation , Animals , Autophagy/genetics , Lung Neoplasms/genetics , Mammals , Mice , Neoplastic Processes , Proto-Oncogene Proteins p21(ras)/genetics , Transcription Factors/genetics
7.
J Food Biochem ; 46(10): e14265, 2022 10.
Article in English | MEDLINE | ID: mdl-35661366

ABSTRACT

There are no medical drugs that provide an acceptable weight loss with minimal adverse effects. This study evaluated the Moringa peregrina (MP) seed extract's anti-obesity effect. Twenty-four (6/each group) male Sprague Dawley rats were divided into group Ι (control), group ΙΙ (high-fat diet [HFD]), group ΙΙΙ (HFD+ MP [250 mg/kg b.wt]), and group ΙV (HFD+ MP [500 mg/kg b.wt]). MP administration significantly ameliorated body weight gains and HFD induced elevation in cholesterol, triglycerides, LDL, and reduced HDL. Moreover, MP seed oil showed high free radical-scavenging activity, delayed ß-carotene bleaching and inhibited lipoprotein and pancreatic lipase enzymes. High-performance liquid chromatography (HPLC) revealed three major active components: crypto-chlorogenic acid, isoquercetin, and astragalin. Both quantitative Real-time PCR (RT-PCR) and western blotting revealed that MP seeds oil significantly decreased the expression of lipogenesis-associated genes such as peroxisome proliferator-activated receptors gamma (PPARγ) and fatty acid synthase (FAS) and significantly elevated the expression of lipolysis-associated genes (acetyl-CoA carboxylase1, ACCl). The oil also enhanced phosphorylation of AMP-activated protein kinase alpha (AMPK-α) and suppressed CCAAT/enhancer-binding protein ß (C/EBPß). In conclusion, administration of M. peregrina seeds oil has anti-obesity potential in HFD-induced obesity in rats. PRACTICAL APPLICATIONS: M. peregrina seeds oil had a potential anti-obesity activity that may be attributed to different mechanisms. These included decreasing body weight, and body mass index and improving lipid levels by decreasing total cholesterol, triglycerides and LDL-C, and increasing HDL-C. Also, M. peregrina seeds oil regulated adipogenesis-associated genes, such as downregulating the expression of (PPARγ, C/EBPα, and FAS) and improving and upregulating the expression and phosphorylation of AMPKα and ACCl. Despite that M. peregrina extract has reported clear anti-obesity potential through animal and laboratory studies, the available evidence-based on human clinical trials are very limited. Therefore, further studies are needed that could focus on clinical trials investigating anti-obesity potential different mechanisms of M. peregrina extract in humans.


Subject(s)
Diet, High-Fat , Moringa , AMP-Activated Protein Kinases/genetics , AMP-Activated Protein Kinases/pharmacology , Acetyl Coenzyme A/metabolism , Acetyl Coenzyme A/pharmacology , Acetyl Coenzyme A/therapeutic use , Adipocytes , Animals , Antioxidants/metabolism , Body Weight , Chlorogenic Acid/metabolism , Cholesterol/metabolism , Cholesterol, LDL/metabolism , Diet, High-Fat/adverse effects , Fatty Acid Synthases/metabolism , Fatty Acid Synthases/pharmacology , Fatty Acid Synthases/therapeutic use , Free Radicals/metabolism , Free Radicals/pharmacology , Free Radicals/therapeutic use , Humans , Lipase/metabolism , Male , Moringa/metabolism , Obesity/drug therapy , Obesity/etiology , PPAR gamma/genetics , PPAR gamma/metabolism , Plant Extracts/metabolism , Plant Extracts/pharmacology , Plant Oils/metabolism , Rats , Rats, Sprague-Dawley , Seeds/metabolism , Triglycerides/metabolism , beta Carotene
8.
J Mol Histol ; 53(2): 511-521, 2022 Apr.
Article in English | MEDLINE | ID: mdl-35137294

ABSTRACT

ATG5-induced autophagy is triggered in the early stages after SAH, which plays a vital role in subarachnoid hemorrhage (SAH). Acyl-CoA synthetase short-chain family 2 (ACSS2) is not just involved in energy metabolism but also binds to TEFB to form a complex translocated to related autophagy genes to regulate the expression of autophagy-related genes. However, the contribution of ACSS2 to the activation of autophagy in early brain injury (EBI) after SAH has barely been discussed. The purpose of this study was to investigate the alterations of ACSS2 and its neuroprotective effects following SAH. We first evaluated the expression of ACSS2 at different time points (6, 12, 24, and 72 h after SAH) in vivo and primary cortical neurons stimulated by oxyhemoglobin (OxyHb). Subsequently, adeno-associated virus and lentivirus were used to regulate ACSS2 expression to investigate the effect of ACSS2 after SAH. The results showed that the ACSS2 level decreased significantly in the early stages of SAH and was minimized at 24 h post-SAH. After artificial intervention to overexpress ACSS2, ATG5-induced autophagy was further enhanced in EBI after SAH, and neuronal apoptosis was alleviated to protect brain injury. In addition, brain edema and neurological function scores were improved. These results suggest that ACSS2 plays an important role in the neuroprotection against EBI after SAH by increasing ATG5-induce autophagy and inhibiting apoptosis.


Subject(s)
Acetate-CoA Ligase/metabolism , Brain Injuries , Neuroprotective Agents , Subarachnoid Hemorrhage , Acetyl Coenzyme A/pharmacology , Animals , Apoptosis , Autophagy/physiology , Brain Injuries/metabolism , Neuroprotective Agents/pharmacology , Rats , Rats, Sprague-Dawley , Subarachnoid Hemorrhage/metabolism
9.
Nat Metab ; 2(10): 1034-1045, 2020 10.
Article in English | MEDLINE | ID: mdl-32839596

ABSTRACT

Benign hepatosteatosis, affected by lipid uptake, de novo lipogenesis and fatty acid (FA) oxidation, progresses to non-alcoholic steatohepatitis (NASH) on stress and inflammation. A key macronutrient proposed to increase hepatosteatosis and NASH risk is fructose. Excessive intake of fructose causes intestinal-barrier deterioration and endotoxaemia. However, how fructose triggers these alterations and their roles in hepatosteatosis and NASH pathogenesis remain unknown. Here we show, using mice, that microbiota-derived Toll-like receptor (TLR) agonists promote hepatosteatosis without affecting fructose-1-phosphate (F1P) and cytosolic acetyl-CoA. Activation of mucosal-regenerative gp130 signalling, administration of the YAP-induced matricellular protein CCN1 or expression of the antimicrobial peptide Reg3b (beta) peptide counteract fructose-induced barrier deterioration, which depends on endoplasmic-reticulum stress and subsequent endotoxaemia. Endotoxin engages TLR4 to trigger TNF production by liver macrophages, thereby inducing lipogenic enzymes that convert F1P and acetyl-CoA to FA in both mouse and human hepatocytes.


Subject(s)
Fructose/pharmacology , Inflammation/metabolism , Lipogenesis/drug effects , Acetyl Coenzyme A/pharmacology , Animals , Endotoxemia/blood , Female , Fructosephosphates/pharmacology , Gastrointestinal Microbiome , Hepatocytes/drug effects , Hepatocytes/metabolism , Humans , Intestines/drug effects , Lipidomics , Macrophages/metabolism , Mice , Mice, Inbred C57BL , Non-alcoholic Fatty Liver Disease/metabolism , Regeneration/drug effects , Toll-Like Receptors/agonists
10.
J Neurochem ; 153(1): 80-102, 2020 04.
Article in English | MEDLINE | ID: mdl-31886885

ABSTRACT

Glutamate dehydrogenase (GDH) is essential for the brain function and highly regulated, according to its role in metabolism of the major excitatory neurotransmitter glutamate. Here we show a diurnal pattern of the GDH acetylation in rat brain, associated with specific regulation of GDH function. Mornings the acetylation levels of K84 (near the ADP site), K187 (near the active site), and K503 (GTP-binding) are highly correlated. Evenings the acetylation levels of K187 and K503 decrease, and the correlations disappear. These daily variations in the acetylation adjust the GDH responses to the enzyme regulators. The adjustment is changed when the acetylation of K187 and K503 shows no diurnal variations, as in the rats after a high dose of thiamine. The regulation of GDH function by acetylation is confirmed in a model system, where incubation of the rat brain GDH with acetyl-CoA changes the enzyme responses to GTP and ADP, decreasing the activity at subsaturating concentrations of substrates. Thus, the GDH acetylation may support cerebral homeostasis, stabilizing the enzyme function during diurnal oscillations of the brain metabolome. Daytime and thiamine interact upon the (de)acetylation of GDH in vitro. Evenings the acetylation of GDH from control animals increases both IC50GTP and EC50ADP . Mornings the acetylation of GDH from thiamine-treated animals increases the enzyme IC50GTP . Molecular mechanisms of the GDH regulation by acetylation of specific residues are proposed. For the first time, diurnal and thiamine-dependent changes in the allosteric regulation of the brain GDH due to the enzyme acetylation are shown.


Subject(s)
Brain/enzymology , Circadian Rhythm/physiology , Glutamate Dehydrogenase/physiology , Thiamine/pharmacology , Acetyl Coenzyme A/pharmacology , Acetylation , Allosteric Regulation/drug effects , Animals , Cerebral Cortex/enzymology , Glutamate Dehydrogenase/antagonists & inhibitors , Glutamate Dehydrogenase/chemistry , Male , Mitochondria/enzymology , NAD/pharmacology , Rats , Rats, Wistar
11.
Blood Cells Mol Dis ; 76: 82-90, 2019 05.
Article in English | MEDLINE | ID: mdl-30853332

ABSTRACT

Differentiation of myeloid progenitor cells into macrophages is accompanied by increased PU.1 concentration and increasing cell cycle length, culminating in cell cycle arrest. Induction of PU.1 expression in a cultured myeloid cell line expressing low PU.1 concentration results in decreased levels of mRNA encoding ATP-Citrate Lyase (ACL) and cell cycle arrest. ACL is an essential enzyme for generating acetyl-CoA, a key metabolite for the first step in fatty acid synthesis and for histone acetylation. We hypothesized that ACL may play a role in cell cycle regulation in the myeloid lineage. In this study, we found that acetyl-CoA or acetate supplementation was sufficient to rescue cell cycle progression in cultured BN cells treated with an ACL inhibitor or induced for PU.1 expression. Acetyl-CoA supplementation was also sufficient to rescue cell cycle progression in BN cells treated with a fatty acid synthase (FASN) inhibitor. We demonstrated that acetyl-CoA was utilized in both fatty acid synthesis and histone acetylation pathways to promote proliferation. Finally, we found that Acly mRNA transcript levels decrease during normal macrophage differentiation from bone marrow precursors. Our results suggest that regulation of ACL activity is a potentially important point of control for cell cycle regulation in the myeloid lineage.


Subject(s)
ATP Citrate (pro-S)-Lyase/physiology , Cell Cycle , Cell Differentiation , Myeloid Progenitor Cells/cytology , Acetyl Coenzyme A/pharmacology , Cell Cycle Checkpoints/drug effects , Cell Line , Humans , Macrophages/cytology , Proto-Oncogene Proteins/metabolism , Proto-Oncogene Proteins/physiology , RNA, Messenger/metabolism , Trans-Activators/metabolism , Trans-Activators/physiology
12.
J Phys Chem B ; 122(5): 1551-1559, 2018 02 08.
Article in English | MEDLINE | ID: mdl-29345931

ABSTRACT

Phosphopantetheine adenylyltransferase (PPAT) is a rate-limiting enzyme essential for biosynthesis of coenzyme A (CoA), which in turn is responsible to regulate the secretion of exotoxins via type III secretion system in Pseudomonas aeruginosa, causing severe health concerns ranging from nosocomial infections to respiratory failure. Acetyl coenzyme A (AcCoA) is a newly reported inhibitor of PPAT, believed to regulate the cellular levels of CoA and thereby the pathogenesis. Very little is known so far regarding the mechanistic details of AcCoA binding inside PPAT-binding cleft. Herein, we have used extensive umbrella sampling simulations to decipher mechanistic insight into the inhibitor accommodation inside the binding cavity. We found that R90 and D94 residues act like a gate near the binding cavity to accommodate and stabilize the incoming ligand. Mutational models concerning these residues also show considerable difference in AcCoA-binding thermodynamics. To substantiate our findings, we have solved the first crystal structure of apo-PPAT from P. aeruginosa, which also found to agree with the simulation results. Collectively, these results describe the mechanistic details of accommodation of inhibitor molecule inside PPAT-binding cavity and also offer valuable insight into regulating cellular levels of CoA/AcCoA and thus controlling the pathogenicity.


Subject(s)
Acetyl Coenzyme A/pharmacology , Nucleotidyltransferases/antagonists & inhibitors , Nucleotidyltransferases/chemistry , Acetyl Coenzyme A/chemistry , Allosteric Site/drug effects , Crystallography, X-Ray , Models, Molecular , Molecular Dynamics Simulation , Nucleotidyltransferases/metabolism , Pseudomonas aeruginosa/enzymology , Thermodynamics
13.
Thorac Cancer ; 8(3): 131-137, 2017 05.
Article in English | MEDLINE | ID: mdl-28296173

ABSTRACT

BACKGROUND: Epithelial to mesenchymal transition (EMT) is a complex and dynamic molecular event in lung cancer metastasis that has not yet been thoroughly investigated. EMT transcriptional factors, such as Snail, play a central role in regulation of the EMT process. In this study, we sought to identify an association between p300 and Snail in lung cancer, as well as the engagement of p300 in Snail acetylation. METHODS: We transfected p300 small interfering RNA into lung cancer cells to detect Snail and E-cadherin expression levels by real time-PCR. Immunoprecipitation assay was conducted to determine Snail acetylation in vivo. Bacteria-expressed Snail was purified to analyze Snail acetylation in vitro. We further mutated lysine 187 for identifying acetylated residue in Snail. RESULTS: Snail transcription in lung cancer cells was repressed by p300 knockdown. E-cadherin expression was increased by transfection of p300 small interfering RNA in a dose-dependent manner. Immunoprecipitation and Western blot assay with anti-acetylated lysine antibody were used to confirm that Snail was acetylated by p300. A sequence coding snail gene was cloned into glutathione S-transferase-tagged vector and the fusion protein was purified using glutathione. We observed Snail acetylation in vitro by incubation of recombinant Snail and p300 histone acetyltransferase domain with acetyl coenzyme A. The reduced Snail acetylation level was related to lysine mutation at position 187 of Snail. CONCLUSION: There was a correlation between Snail and p300 expressions in lung cancer. Moreover, p300 acetylates Snail both in vivo and in vitro, and K187 may be involved in this modification.


Subject(s)
Cadherins/genetics , Lung Neoplasms/genetics , Snail Family Transcription Factors/genetics , Transcription, Genetic , p300-CBP Transcription Factors/genetics , A549 Cells , Acetyl Coenzyme A/pharmacology , Acetylation , Antigens, CD , Cadherins/metabolism , Epithelial-Mesenchymal Transition/genetics , Gene Expression Regulation, Neoplastic/genetics , Humans , Lung Neoplasms/pathology , Promoter Regions, Genetic , Protein Processing, Post-Translational , RNA, Small Interfering , Snail Family Transcription Factors/metabolism , p300-CBP Transcription Factors/metabolism
14.
Nat Chem Biol ; 10(11): 937-42, 2014 Nov.
Article in English | MEDLINE | ID: mdl-25218742

ABSTRACT

Enzyme activity is commonly controlled by allostery, where ligand binding at one site alters the activities of distant sites. Classical explanations for multisubunit proteins involve conformational transitions that are fundamentally deterministic. For example, in the Monod-Wyman-Changeaux (MWC) paradigm, conformational transitions occur simultaneously in all subunits. In the Koshland-Nemethy-Filmer (KNF) paradigm, conformational transitions only occur in ligand-bound subunits. In contrast, recent models predict conformational changes that are governed by probabilities rather than absolute rules. To better understand allostery at the molecular level, we applied a recently developed spectroscopic and calorimetric method to the interactions of a dimeric enzyme with two different ligands. We found that conformational transitions appear MWC-like for a ligand that binds at the dimer interface and KNF-like for a distal ligand. These results provide strong experimental support for probabilistic allosteric theory predictions that an enzyme can exhibit a mixture of MWC and KNF character, with the balance partly governed by subunit interface energies.


Subject(s)
Acetyltransferases/chemistry , Acetyltransferases/metabolism , Allosteric Regulation , Protein Multimerization , Acetyl Coenzyme A/chemistry , Acetyl Coenzyme A/metabolism , Acetyl Coenzyme A/pharmacology , Allosteric Regulation/drug effects , Binding Sites/drug effects , Enzyme Activation/drug effects , Ligands , Models, Molecular , Paromomycin/chemistry , Paromomycin/metabolism , Paromomycin/pharmacology , Protein Multimerization/drug effects , Protein Subunits/chemistry , Protein Subunits/metabolism , Protein Unfolding , Structure-Activity Relationship , Substrate Specificity/drug effects , Thermodynamics
15.
Proc Natl Acad Sci U S A ; 110(18): 7318-23, 2013 Apr 30.
Article in English | MEDLINE | ID: mdl-23589851

ABSTRACT

In budding yeast cells, nutrient repletion induces rapid exit from quiescence and entry into a round of growth and division. The G1 cyclin CLN3 is one of the earliest genes activated in response to nutrient repletion. Subsequent to its activation, hundreds of cell-cycle genes can then be expressed, including the cyclins CLN1/2 and CLB5/6. Although much is known regarding how CLN3 functions to activate downstream targets, the mechanism through which nutrients activate CLN3 transcription in the first place remains poorly understood. Here we show that a central metabolite of glucose catabolism, acetyl-CoA, induces CLN3 transcription by promoting the acetylation of histones present in its regulatory region. Increased rates of acetyl-CoA synthesis enable the Gcn5p-containing Spt-Ada-Gcn5-acetyltransferase transcriptional coactivator complex to catalyze histone acetylation at the CLN3 locus alongside ribosomal and other growth genes to promote entry into the cell division cycle.


Subject(s)
Acetyl Coenzyme A/pharmacology , Cell Cycle/genetics , Cyclin G1/genetics , Cyclins/genetics , Saccharomyces cerevisiae Proteins/genetics , Saccharomyces cerevisiae/cytology , Saccharomyces cerevisiae/genetics , Transcription, Genetic/drug effects , Acetylation/drug effects , Cell Cycle/drug effects , Cyclin G1/metabolism , Cyclins/metabolism , Gene Expression Regulation, Fungal/drug effects , Glucose/metabolism , Histones/metabolism , Models, Biological , Multiprotein Complexes/metabolism , Promoter Regions, Genetic/genetics , Ribosomal Proteins/metabolism , Saccharomyces cerevisiae/metabolism , Saccharomyces cerevisiae Proteins/metabolism , Trans-Activators/metabolism
16.
Microbiology (Reading) ; 159(Pt 4): 792-802, 2013 Apr.
Article in English | MEDLINE | ID: mdl-23429745

ABSTRACT

ToxT is the central regulatory protein involved in activation of the main virulence genes in Vibrio cholerae. We have identified transposon insertions in central metabolism genes, whose disruption increases toxT transcription. These disrupted genes encode the primary respiration-linked sodium pump (NADH:ubiquinone oxidoreductase or NQR) and certain tricarboxylic acid (TCA) cycle enzymes. Observations made following stimulation of respiration in the nqr mutant or chemical inhibition of NQR activity in the TCA cycle mutants led to the hypothesis that NQR affects toxT transcription via the TCA cycle. That toxT transcription increased when the growth medium was supplemented with citrate, but decreased with oxaloacetate, focused our attention on the TCA cycle substrate acetyl-CoA and its non-TCA cycle metabolism. Indeed, both the nqr and the TCA cycle mutants increased acetate excretion. A similar correlation between acetate excretion and toxT transcription was observed in a tolC mutant and upon amino acid (NRES) supplementation. As acetate and its tendency to decrease pH exerted no strong effect on toxT transcription, and because disruption of the major acetate excretion pathway increased toxT transcription, we propose that toxT transcription is regulated by either acetyl-CoA or some close derivative.


Subject(s)
Acetyl Coenzyme A/metabolism , Bacterial Proteins/metabolism , Gene Expression Regulation, Bacterial , Transcription Factors/metabolism , Vibrio cholerae O1/metabolism , Vibrio cholerae O1/pathogenicity , Acetates/metabolism , Acetyl Coenzyme A/pharmacology , Amino Acids/metabolism , Bacterial Proteins/genetics , Citric Acid/metabolism , Citric Acid Cycle/genetics , Citric Acid Cycle/physiology , Culture Media/chemistry , DNA Transposable Elements , Mutagenesis, Insertional , Oxygen Consumption/genetics , Oxygen Consumption/physiology , Transcription Factors/genetics , Vibrio cholerae O1/genetics , Vibrio cholerae O1/growth & development , Virulence
17.
Br J Pharmacol ; 168(8): 1911-22, 2013 Apr.
Article in English | MEDLINE | ID: mdl-23215951

ABSTRACT

BACKGROUND AND PURPOSE: Acyl derivatives of CoA have been shown to act as antagonists at human platelet and recombinant P2Y1 receptors, but little is known about their effects in the cardiovascular system. This study evaluated the effect of these endogenous nucleotide derivatives at P2Y1 receptors natively expressed in rat and porcine blood vessels. EXPERIMENTAL APPROACH: Isometric tension recordings were used to evaluate the effects of CoA, acetyl CoA, palmitoyl CoA (PaCoA) and 3'-dephospho-palmitoyl-CoA on concentration relaxation-response curves to ADP and uridine triphosphate (UTP). A FlexStation monitored ADP- and UTP-evoked calcium responses in HEK293 cells. KEY RESULTS: Acetyl CoA and PaCoA, but not CoA, inhibited endothelium-dependent relaxations to ADP with apparent selectivity for P2Y1 receptors (over P2Y(2/4) receptors) in rat thoracic aorta; PaCoA was more potent than acetyl CoA (331-fold vs. fivefold shift of ADP response curve evoked by 10 µM PaCoA and acetyl CoA, respectively); the apparent pA2 value for PaCoA was 6.44. 3'-dephospho-palmitoyl-CoA (10 µM) was significantly less potent than PaCoA (20-fold shift). In porcine mesenteric arteries, PaCoA and the P2Y1 receptor antagonist MRS2500 blocked ADP-mediated endothelium-dependent relaxations; in contrast, they were ineffective against ADP-mediated endothelium-independent relaxation in porcine coronary arteries (which does not involve P2Y1 receptors). Calcium responses evoked by ADP activation of endogenous P2Y1 receptors in HEK293 cells were inhibited in the presence of PaCoA, which failed to alter responses to UTP (acting at endogenous P2Y(2/4) receptors). CONCLUSIONS AND IMPLICATIONS: Acyl derivatives of CoA can act as endogenous selective antagonists of P2Y1 receptors in blood vessels, and this inhibitory effect critically depends on the palmitate and 3'-ribose phosphate substituents on CoA.


Subject(s)
Acyl Coenzyme A/pharmacology , Adenosine Diphosphate/analogs & derivatives , Adenosine Diphosphate/metabolism , Aorta, Thoracic/physiology , Muscle Relaxation , Purinergic P2Y Receptor Antagonists/pharmacology , Uridine Diphosphate/metabolism , Acetyl Coenzyme A/pharmacology , Adenosine Diphosphate/pharmacology , Animals , Calcium/metabolism , Coronary Vessels/physiology , HEK293 Cells , Humans , In Vitro Techniques , Male , Mesenteric Arteries/physiology , Muscle Relaxation/drug effects , Palmitoyl Coenzyme A/pharmacology , Rats , Rats, Wistar , Receptors, Purinergic P2Y1/metabolism , Swine
18.
J Neurochem ; 123(4): 525-31, 2012 Nov.
Article in English | MEDLINE | ID: mdl-22906069

ABSTRACT

Physiological or α-processing of amyloid-ß precursor protein (APP) prevents the formation of Aß, which is deposited in the aging brain and may contribute to Alzheimer's disease. As such, drugs promoting this pathway could be useful for prevention of the disease. Along this line, we searched through a number of substances and unexpectedly found that a group of high-energy compounds (HECs), namely ATP, phosphocreatine, and acetyl coenzyme A, potently increased APP α-processing in cultured SH-SY5Y cells, whereas their cognate counterparts, i.e., ADP, creatine, or coenzyme A did not show the same effects. Other HECs such as GTP, CTP, phosphoenol pyruvate, and S-adenosylmethionine also promoted APP α-processing with varying potencies and the effects were abolished by energy inhibitors rotenone or NaN(3). The overall efficacy of the HECs in the process ranged from three- to four-fold, which was significantly greater than that exhibited by other physiological stimulators such as glutamate and nicotine. This suggested that the HECs were perhaps the most efficient physiological stimulators for APP α-processing. Moreover, the HECs largely offset the inefficient APP α-processing in aged human fibroblasts or in cells impaired by rotenone or H(2) O(2). Most importantly, some HECs markedly boosted the survival rate of SH-SY5Y cells in the death process induced by energy suppression or oxidative stress. These findings suggest a new, energy-dependent regulatory mechanism for the putative α-secretase and thus will help substantially in its identification. At the same time, the study raises the possibility that the HECs may be useful to energize and strengthen the aging brain cells to slow down the progression of Alzheimer's disease.


Subject(s)
Amyloid beta-Protein Precursor/metabolism , Fibroblasts/drug effects , Gene Expression Regulation/drug effects , Phosphocreatine/pharmacology , Purine Nucleotides/pharmacology , Acetyl Coenzyme A/pharmacology , Adenosine Triphosphate/pharmacology , Age Factors , Analysis of Variance , Cell Count , Cell Survival/drug effects , Cells, Cultured , Cyanates/pharmacology , Dose-Response Relationship, Drug , Humans , Hydrogen Peroxide/pharmacology , Neuroblastoma/pathology , Rotenone/pharmacology , Skin/cytology
19.
J Exp Bot ; 63(8): 2909-19, 2012 May.
Article in English | MEDLINE | ID: mdl-22330897

ABSTRACT

Mitochondria are important in the function and control of Crassulacean acid metabolism (CAM) during organic acid accumulation at night and acid decarboxylation in the day. In plants of the malic enzyme-(ME) type and the phosphoenolpyruvate carboxykinase- (PEPCK) type, mitochondria may exert their role in the control of the diurnal rhythm of malic and citric acids to a differential degree. In plants of both CAM types, the oxidative capacity of mitochondria, as well as the activity of CAM-linked mitochondrial enzymes, and of the alternative and the rotenone-resistant pathways of substrate oxidation were compared. Furthermore, a C3 succulent was included, as well as both C3 and CAM forms of Mesembryanthemum crystallinum during a salt-induced C3-to-CAM shift. Mitochondria of PEPCK-type CAM plants exhibited a lower activity of malate oxidation, ratio of malate to succinate oxidation, and activity of mitochondrial NAD-ME. With the exception of Kalanchoë daigremontiana, leaf mitochondria of all other CAM species were highly sensitive to cyanide (80-100%), irrespective of the oxidant used. This indicates that the alternative oxidase is not of general importance in CAM. By contrast, rotenone-insensitive substrate oxidation was very high (50-90%) in all CAM species. This is the first comparison of the rotenone-insensitive pathway of respiration in plants with different CAM-types. The results of this study confirm that mitochondria are involved in the control of CAM to different degrees in the two CAM types, and they highlight the multiple roles of mitochondria in CAM.


Subject(s)
Cytochromes/metabolism , Malate Dehydrogenase/metabolism , Metabolic Networks and Pathways/drug effects , Mitochondria/metabolism , Phosphoenolpyruvate Carboxykinase (ATP)/metabolism , Plants/enzymology , Rotenone/pharmacology , Acetyl Coenzyme A/pharmacology , Carboxylic Acids , Cell Respiration/drug effects , Cyanides/toxicity , Magnesium/pharmacology , Malates/metabolism , Manganese/pharmacology , Mitochondria/drug effects , Mitochondria/enzymology , NAD/metabolism , NADP/metabolism , Osmosis/drug effects , Oxidation-Reduction/drug effects , Oxygen Consumption/drug effects , Plants/drug effects , Pyruvates/pharmacology , Species Specificity , Succinic Acid/metabolism
20.
Biochemistry ; 50(45): 9694-707, 2011 Nov 15.
Article in English | MEDLINE | ID: mdl-21958066

ABSTRACT

While crystallographic structures of the R. etli pyruvate carboxylase (PC) holoenzyme revealed the location and probable positioning of the essential activator, Mg(2+), and nonessential activator, acetyl-CoA, an understanding of how they affect catalysis remains unclear. The current steady-state kinetic investigation indicates that both acetyl-CoA and Mg(2+) assist in coupling the MgATP-dependent carboxylation of biotin in the biotin carboxylase (BC) domain with pyruvate carboxylation in the carboxyl transferase (CT) domain. Initial velocity plots of free Mg(2+) vs pyruvate were nonlinear at low concentrations of Mg(2+) and a nearly complete loss of coupling between the BC and CT domain reactions was observed in the absence of acetyl-CoA. Increasing concentrations of free Mg(2+) also resulted in a decrease in the K(a) for acetyl-CoA. Acetyl phosphate was determined to be a suitable phosphoryl donor for the catalytic phosphorylation of MgADP, while phosphonoacetate inhibited both the phosphorylation of MgADP by carbamoyl phosphate (K(i) = 0.026 mM) and pyruvate carboxylation (K(i) = 2.5 mM). In conjunction with crystal structures of T882A R. etli PC mutant cocrystallized with phosphonoacetate and MgADP, computational docking studies suggest that phosphonoacetate could coordinate to one of two Mg(2+) metal centers in the BC domain active site. Based on the pH profiles, inhibition studies, and initial velocity patterns, possible mechanisms for the activation, regulation, and coordination of catalysis between the two spatially distinct active sites in pyruvate carboxylase from R. etli by acetyl-CoA and Mg(2+) are described.


Subject(s)
Bacterial Proteins/antagonists & inhibitors , Bacterial Proteins/metabolism , Pyruvate Carboxylase/antagonists & inhibitors , Pyruvate Carboxylase/metabolism , Rhizobium etli/enzymology , Acetyl Coenzyme A/metabolism , Acetyl Coenzyme A/pharmacology , Adenosine Diphosphate/metabolism , Adenosine Triphosphate/metabolism , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Catalytic Domain , Enzyme Activation/drug effects , Enzyme Inhibitors/pharmacology , Hydrogen-Ion Concentration , Kinetics , Magnesium/metabolism , Magnesium/pharmacology , Mutagenesis, Site-Directed , Oxaloacetic Acid/metabolism , Phosphonoacetic Acid/pharmacology , Phosphorylation , Protein Structure, Tertiary , Pyruvate Carboxylase/chemistry , Pyruvate Carboxylase/genetics , Recombinant Proteins/antagonists & inhibitors , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Rhizobium etli/genetics
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