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1.
Mikrochim Acta ; 191(6): 297, 2024 05 06.
Article in English | MEDLINE | ID: mdl-38709347

ABSTRACT

A new detection platform based on a hydroxylated covalent organic framework (COF) integrated with liquid chromatography-tandem mass spectrometry (LC-MS/MS) was constructed and used for detecting adrenergic receptor agonists (ARAs) residues in milk. The hydroxylated COF was prepared by polymerization of tris(4-aminophenyl)amine and 1,3,5-tris(4-formyl-3-hydroxyphenyl)benzene and applied to solid-phase extraction (SPE) of ARAs. This hydroxylated COF was featured with hierarchical flower-like morphology, easy preparation, and copious active adsorption sites. The adsorption model fittings and molecular simulation were applied to explore the potential adsorption mechanism. This detection platform was suitable for detecting four α2- and five ß2-ARAs residues in milk. The linear ranges of the ARAs were from 0.25 to 50 µg·kg-1; the intra-day and the inter-day repeatability were in the range 2.9-7.9% and 2.0-10.1%, respectively. This work demonstrates this hydroxylated COF has great potential as SPE cartridge packing, and provides a new way to determine ARAs residues in milk.


Subject(s)
Milk , Solid Phase Extraction , Tandem Mass Spectrometry , Solid Phase Extraction/methods , Milk/chemistry , Animals , Tandem Mass Spectrometry/methods , Hydroxylation , Metal-Organic Frameworks/chemistry , Adsorption , Adrenergic Agonists/chemistry , Adrenergic Agonists/analysis , Limit of Detection , Cattle
2.
J Biomol Struct Dyn ; 40(11): 5112-5127, 2022 07.
Article in English | MEDLINE | ID: mdl-33397209

ABSTRACT

Novel coronavirus (COVID-19) responsible for viral pneumonia which emerged in late 2019 has badly affected the world. No clinically proven drugs are available yet as the targeted therapeutic agents for the treatment of this disease. The viral main protease which helps in replication and transcription inside the host can be an effective drug target. In the present study, we aimed to discover the potential of ß-adrenoceptor agonists and adenosine deaminase inhibitors which are used in asthma and cancer/inflammatory disorders, respectively, as repurposing drugs against protease inhibitor by ligand-based and structure-based virtual screening using COVID-19 protease-N3 complex. The AARRR pharmacophore model was used to screen a set of 22,621 molecules to obtain hits, which were subjected to high-throughput virtual screening. Extra precision docking identified four top-scored molecules such as +/--fenoterol, FR236913 and FR230513 with lower binding energy from both categories. Docking identified three major hydrogen bonds with Gly143, Glu166 and Gln189 residues. 100 ns MD simulation was performed for four top-scored molecules to analyze the stability, molecular mechanism and energy requirements. MM/PBSA energy calculation suggested that van der Waals and electrostatic energy components are the main reasons for the stability of complexes. Water-mediated hydrogen bonds between protein-ligand and flexibility of the ligand are found to be responsible for providing extra stability to the complexes. The insights gained from this combinatorial approach can be used to design more potent and bio-available protease inhibitors against novel coronavirus.Communicated by Ramaswamy H. Sarma.


Subject(s)
Adenosine Deaminase Inhibitors , Adrenergic Agonists , Antiviral Agents , Coronavirus 3C Proteases , SARS-CoV-2 , Adenosine Deaminase Inhibitors/chemistry , Adenosine Deaminase Inhibitors/pharmacology , Adrenergic Agonists/chemistry , Adrenergic Agonists/pharmacology , Antiviral Agents/chemistry , Antiviral Agents/pharmacology , Coronavirus 3C Proteases/antagonists & inhibitors , Drug Repositioning , Humans , Ligands , Molecular Docking Simulation , Molecular Dynamics Simulation , Protease Inhibitors/chemistry , Protease Inhibitors/pharmacology , Receptors, Adrenergic , SARS-CoV-2/drug effects , COVID-19 Drug Treatment
3.
Biomolecules ; 11(7)2021 06 24.
Article in English | MEDLINE | ID: mdl-34202543

ABSTRACT

Adrenergic receptors are G protein-coupled receptors for epinephrine and norepinephrine. They are targets of many drugs for various conditions, including treatment of hypertension, hypotension, and asthma. Adrenergic receptors are intensively studied in structural biology, displayed for binding poses of different types of ligands. Here, we summarized molecular mechanisms of ligand recognition and receptor activation exhibited by structure. We also reviewed recent advances in structure-based ligand discovery against adrenergic receptors.


Subject(s)
Adrenergic Agonists/chemistry , Adrenergic Agonists/metabolism , Adrenergic Antagonists/chemistry , Adrenergic Antagonists/metabolism , Receptors, Adrenergic/chemistry , Receptors, Adrenergic/metabolism , Amino Acid Sequence , Animals , Crystallography, X-Ray/methods , Epinephrine/chemistry , Epinephrine/metabolism , Humans , Ligands , Norepinephrine/chemistry , Norepinephrine/metabolism , Protein Binding/physiology , Protein Conformation , Protein Structure, Secondary , Protein Structure, Tertiary , Receptors, Adrenergic/genetics
4.
Drug Dev Res ; 81(6): 716-727, 2020 09.
Article in English | MEDLINE | ID: mdl-32359095

ABSTRACT

Ocular allergy is one of the most common disorders of the eye surface. The conventional eye drops lack of therapeutic efficacy due to low ocular bioavailability and decreased drug residence time on eye surface. Hence, the present research work aimed to formulate, optimize, and evaluate the in situ gel for ophthalmic drug delivery. The prepared in situ gel formulations were evaluated for clarity, pH, gelling capacity, viscosity, osmolality, in vitro release study, and kinetic evaluation. ex vivo corneal permeation/penetration study using goat and in vivo studies on rabbits were also performed. Fourier-transformed infrared spectroscopy was also applied to study possible interactions between drug and polymers. The formulations found to be stable, nonirritant, and showed sustained release of the drug for a period of up to 24 hr with no ocular damage. The developed in situ gels loaded with tetrahydrozoline are alternative and promising ocular candidates for the treatment of allergic conjunctivitis.


Subject(s)
Adrenergic Agonists/administration & dosage , Conjunctivitis, Allergic/drug therapy , Imidazoles/administration & dosage , Nasal Decongestants/administration & dosage , Adrenergic Agonists/chemistry , Animals , Cornea/drug effects , Cornea/metabolism , Drug Liberation , Gels , Imidazoles/chemistry , Nasal Decongestants/chemistry , Rabbits
5.
Biochem Pharmacol ; 171: 113731, 2020 01.
Article in English | MEDLINE | ID: mdl-31783011

ABSTRACT

Stereoselectivity is well described for receptor binding and enzyme catalysis, but so far has only been scarcely investigated in carrier-mediated membrane transport. We thus studied transport kinetics of racemic (anti)adrenergic drugs by the organic cation transporters OCT1 (wild-type and allelic variants), OCT2, OCT3, MATE1, and MATE2-K with a focus on stereospecificity. OCT1 showed stereoselective uptake with up to 2-fold higher vmax over their corresponding counterpart enantiomers for (R,R)-fenoterol, (R,R)-formoterol, (S)-salbutamol, (S)-acebutolol, and (S)-atenolol. Orciprenaline and etilefrine were also transported stereoselectively. The Km was 2.1-fold and 1.5-fold lower for the (S,S)-enantiomers of fenoterol and formoterol, while no significant difference in Km was seen for the other aforementioned drugs. Common OCT1 variants showed similar enantiopreference to wild-type OCT1, with a few notable exceptions (e.g. a switch in enantiospecificity for fenoterol in OCT1*2 compared to the wild-type). Other cation transporters showed strong differences to OCT1 in stereoselectivity and transport activity: The closely related OCT2 displayed a 20-fold higher vmax for (S,S)-fenoterol compared to (R,R)-fenoterol and OCT2 and OCT3 showed 3.5-fold and 4.6-fold higher vmax for the pharmacologically active (R)-salbutamol over (S)-salbutamol. MATE1 and MATE2-K generally mediated transport with a higher capacity but lower affinity compared to OCT1, with moderate stereoselectivity. Our kinetic studies showed that significant stereoselectivity exists in solute carrier-mediated membrane transport of racemic beta-adrenergic drugs with surprising, and in some instances even opposing, preferences between closely related organic cation transporters. This may be relevant for drug therapy, given the strong involvement of these transporters in hepatic and renal drug elimination.


Subject(s)
Adrenergic Agonists/pharmacology , Adrenergic Antagonists/pharmacology , Organic Cation Transport Proteins/agonists , Organic Cation Transport Proteins/antagonists & inhibitors , Acebutolol/chemistry , Acebutolol/metabolism , Acebutolol/pharmacology , Adrenergic Agonists/chemistry , Adrenergic Agonists/metabolism , Adrenergic Antagonists/chemistry , Adrenergic Antagonists/metabolism , Atenolol/chemistry , Atenolol/pharmacology , Biological Transport , Fenoterol/chemistry , Fenoterol/metabolism , Fenoterol/pharmacology , Formoterol Fumarate/chemistry , Formoterol Fumarate/metabolism , Formoterol Fumarate/pharmacology , HEK293 Cells , Humans , Kinetics , Organic Cation Transport Proteins/metabolism , Organic Cation Transporter 1/agonists , Organic Cation Transporter 1/antagonists & inhibitors , Organic Cation Transporter 1/metabolism , Organic Cation Transporter 2/agonists , Organic Cation Transporter 2/antagonists & inhibitors , Organic Cation Transporter 2/metabolism , Stereoisomerism
6.
Int J Mol Sci ; 20(17)2019 Aug 24.
Article in English | MEDLINE | ID: mdl-31450631

ABSTRACT

Crosstalk between opioid and adrenergic receptors is well characterized and due to interactions between second messenger systems, formation of receptor heterodimers, and extracellular allosteric binding regions. Both classes of receptors bind both sets of ligands. We propose here that receptor crosstalk may be mirrored in ligand complementarity. We demonstrate that opioids bind to adrenergic compounds with micromolar affinities. Additionally, adrenergic compounds bind with micromolar affinities to extracellular loops of opioid receptors while opioids bind to extracellular loops of adrenergic receptors. Thus, each compound type can bind to the complementary receptor, enhancing the activity of the other compound type through an allosteric mechanism. Screening for ligand complementarity may permit the identification of other mutually-enhancing sets of compounds as well as the design of novel combination drugs or tethered compounds with improved duration and specificity of action.


Subject(s)
Adrenergic Agonists/chemistry , Analgesics, Opioid/chemistry , Drug Development , Receptors, Adrenergic/chemistry , Receptors, Opioid/chemistry , Adrenergic Agonists/pharmacology , Analgesics, Opioid/pharmacology , Drug Development/methods , Humans , Kinetics , Ligands , Models, Biological , Peptides/chemistry , Peptides/metabolism , Protein Binding , Receptors, Opioid/agonists , Structure-Activity Relationship
7.
J Chromatogr A ; 1577: 59-65, 2018 Nov 23.
Article in English | MEDLINE | ID: mdl-30309706

ABSTRACT

Traditional Chinese Medicines (TCMs) have been widely used in clinical practice, and provided a rich source for discovering new drug leads. However, efficient identification of active molecules responsible for the therapeutic effects of complex TCMs is still highly challenging. Here, we combined label-free cell phenotypic assay with two dimensional liquid chromatography (2DLC) to identify potential ß2-adrenoceptor (ß2-AR) agonists related to anti-asthmatic effect of Curcuma zedoaria Rosc (C.zedoaria), a commonly used TCM. The ethyl acetate extract of C.zedoaria was first fractionated into 26 fractions. Label-free cell phenotypic profiling was then used to locate the active sites. Orthogonal second-dimensional (D2) separation was performed on two fractions displaying agonistic effect at the ß2-AR, combined with screening of the D2 fractions to track the activity. Finally, this approach led to the isolation of three known diarylheptanoids, among which diarylheptanoid b exhibited the most potent agonistic activity with an EC50 value of 5.93 µM. This result was further demonstrated through the chemical synthesis of diarylheptanoid b. It is the first time to discover that diarylheptanoids could activate the ß2-AR, which may be responsible for the anti-asthmatic effect of C.zedoaria observed traditionally and in clinical application. This study also demonstrates the potential of this integrated strategy for identifying active ingredients and determining the basis of therapeutic materials in complex TCMs.


Subject(s)
Adrenergic Agonists/chemistry , Chromatography, Liquid , Curcuma/chemistry , Adrenergic Agonists/isolation & purification , Adrenergic Agonists/pharmacology , Anti-Asthmatic Agents/chemistry , Anti-Asthmatic Agents/isolation & purification , Anti-Asthmatic Agents/pharmacology , Inhibitory Concentration 50 , Medicine, Chinese Traditional , Plant Extracts/chemistry , Plant Extracts/isolation & purification , Plant Extracts/pharmacology , Protein Binding/drug effects , Receptors, Adrenergic/metabolism
8.
Eur J Med Chem ; 152: 424-435, 2018 May 25.
Article in English | MEDLINE | ID: mdl-29751236

ABSTRACT

A new series of ß2-adrenoceptor agonists bearing the 2-amino-2-phenylethanol scaffold was synthesized. Evaluation of the compounds using cell assays and an in vitro guinea pig trachea relaxation assay showed that 8-hydroxy-5-(2-hydroxy-1-((4-hydroxyphenethyl)amino)ethyl)quinolin-2(1H)-one (compound 5j) has the best pharmacological profile among all the evaluated compounds. The (S)-isomer of 5j was subsequently found to be the active enantiomer with a promising EC50 value of 1.26 nM in stimulating ß2-adrenoceptor-mediated cAMP accumulation and a substantially higher selectivity for the ß2 than for the ß1 subtype. The putative binding mode of (S)-5j revealed by molecular docking of the ß2-adrenoceptor resembles that in agonist binding. Taken together, these results showed that compound (S)-5j is a promising compound worthy of further study for the development of ß2-adrenoceptor agonists.


Subject(s)
Adrenergic Agonists/pharmacology , Ethanolamines/pharmacology , Receptors, Adrenergic, beta-2/metabolism , Adrenergic Agonists/chemical synthesis , Adrenergic Agonists/chemistry , Animals , Caco-2 Cells , Dose-Response Relationship, Drug , Ethanolamines/chemical synthesis , Ethanolamines/chemistry , Guinea Pigs , HEK293 Cells , Humans , Male , Models, Molecular , Molecular Structure , Structure-Activity Relationship , Trachea/drug effects , Trachea/metabolism
9.
J Nat Prod ; 81(4): 768-777, 2018 04 27.
Article in English | MEDLINE | ID: mdl-29517238

ABSTRACT

Isoquinoline alkaloids possess a wide range of structural features and pharmaceutical activities and are promising drug candidates. Ten water-soluble catecholic isoquinolines were isolated from the medicinal plant Portulaca oleracea, including three new (1-3) and seven known compounds (4-10), along with the known catecholamines 11 and 12 and four other known compounds (13-16). A method of polyamide column chromatography using EtOAc-MeOH as the mobile phase was developed for the isolation of catecholic isoquinolines. Alkaloids 1-12 exhibited anti-inflammatory activities (EC50 = 18.0-497.7 µM) through inhibition of NO production in lipopolysaccharide-induced murine macrophage RAW 264.7 cells. Among these compounds, 11, 2, 5, 4, and 8 were more potent than was the positive control, 3,4-dihydroxybenzohydroxamic acid (EC50 = 82.4 µM), with EC50 values of 18.0, 18.1, 35.4, 36.3, and 58.7 µM, respectively. Additionally, at 100 µM, compounds 1-12 showed different degrees of ß2-adrenergic receptor (ß2-AR) agonist activity in the CHO-K1/GA15 cell line which stably expressed ß2-AR as detected by a calcium assay. The EC50 values of 2 and 10 were 5.1 µM and 87.9 nM, respectively.


Subject(s)
Adrenergic Agonists/pharmacology , Adrenergic beta-2 Receptor Agonists/metabolism , Anti-Inflammatory Agents/pharmacology , Isoquinolines/pharmacology , Portulaca/chemistry , Adrenergic Agonists/chemistry , Animals , Anti-Inflammatory Agents/chemistry , CHO Cells , Cell Line , Cricetulus , Isoquinolines/chemistry , Macrophages/drug effects , Macrophages/metabolism , Mice , Plant Extracts/chemistry , Plant Extracts/pharmacology , Plants, Medicinal/chemistry , RAW 264.7 Cells
10.
Angew Chem Int Ed Engl ; 57(19): 5292-5295, 2018 05 04.
Article in English | MEDLINE | ID: mdl-29469969

ABSTRACT

The conformational complexity of transmembrane signaling of G-protein-coupled receptors (GPCRs) is a central hurdle for the design of screens for receptor agonists. In their basal states, GPCRs have lower affinities for agonists compared to their G-protein-bound active state conformations. Moreover, different agonists can stabilize distinct active receptor conformations and do not uniformly activate all cellular signaling pathways linked to a given receptor (agonist bias). Comparative fragment screens were performed on a ß2 -adrenoreceptor-nanobody fusion locked in its active-state conformation by a G-protein-mimicking nanobody, and the same receptor in its basal-state conformation. This simple biophysical assay allowed the identification and ranking of multiple novel agonists and permitted classification of the efficacy of each hit in agonist, antagonist, or inverse agonist categories, thereby opening doors to nanobody-enabled reverse pharmacology.


Subject(s)
Adrenergic Agonists/pharmacology , Adrenergic Antagonists/pharmacology , Nanostructures/chemistry , Receptors, G-Protein-Coupled/agonists , Receptors, G-Protein-Coupled/antagonists & inhibitors , Adrenergic Agonists/chemistry , Adrenergic Antagonists/chemistry , Dose-Response Relationship, Drug , Drug Discovery , Humans , Molecular Structure
11.
Int J Mol Sci ; 19(1)2018 Jan 17.
Article in English | MEDLINE | ID: mdl-29342106

ABSTRACT

Extensive evidence demonstrates functional interactions between the adrenergic and opioid systems in a diversity of tissues and organs. While some effects are due to receptor and second messenger cross-talk, recent research has revealed an extracellular, allosteric opioid binding site on adrenergic receptors that enhances adrenergic activity and its duration. The present research addresses whether opioid receptors may have an equivalent extracellular, allosteric adrenergic binding site that has similar enhancing effects on opioid binding. Comparison of adrenergic and opioid receptor sequences revealed that these receptors share very significant regions of similarity, particularly in some of the extracellular and transmembrane regions associated with adrenergic binding in the adrenergic receptors. Five of these shared regions from the mu opioid receptor (muOPR) were synthesized as peptides and tested for binding to adrenergic, opioid and control compounds using ultraviolet spectroscopy. Adrenergic compounds bound to several of these muOPR peptides with low micromolar affinity while acetylcholine, histamine and various adrenergic antagonists did not. Similar studies were then conducted with purified, intact muOPR with similar results. Combinations of epinephrine with methionine enkephalin or morphine increased the binding of both by about half a log unit. These results suggest that muOPR may be allosterically enhanced by adrenergic agonists.


Subject(s)
Adrenergic Agonists/metabolism , Enkephalin, Methionine/metabolism , Morphine/metabolism , Protein Interaction Domains and Motifs , Receptors, Opioid, mu/metabolism , Acetylcholine/chemistry , Acetylcholine/metabolism , Adrenergic Agonists/chemistry , Amino Acid Sequence , Animals , Enkephalin, Methionine/chemistry , Histamine/chemistry , Histamine/metabolism , Humans , Methionine/chemistry , Methionine/metabolism , Mice , Morphine/chemistry , Protein Binding , Receptors, Adrenergic, alpha-1/chemistry , Receptors, Adrenergic, alpha-1/metabolism , Receptors, Opioid, mu/chemistry , Spectrophotometry, Ultraviolet
12.
Luminescence ; 32(5): 706-712, 2017 Aug.
Article in English | MEDLINE | ID: mdl-27900836

ABSTRACT

A new, simple, sensitive and rapid spectrofluorimetric method has been developed for determination of certain adrenergic agonists such as isoxsuprine hydrochloride, ritodrine hydrochloride and etilefrine hydrochloride in their pure forms and pharmaceutical dosage forms. The method depends on micellar enhancement of the native fluorescence of investigated drugs by using 2% w/v sodium dodecyl sulfate (SDS) as an anionic surfactant. The enhanced fluorescence intensity of investigated drugs was measured at 305 nm after excitation at 278 nm. The interaction of studied drugs with SDS was studied, and the enhanced fluorescence intensity was exploited to develop an assay method for the determination of investigated drugs. The relative fluorescence intensity-concentration plots were rectilinear over the range 0.15-3.00 µg ml-1 , with low quantification limits of 0.132, 0.123 and 0.118 µg mL-1 for isoxsuprine, ritodrine and etilefrine, respectively. The proposed method was successfully applied for determination of studied drugs in their pharmaceutical formulations. Moreover, the high sensitivity of the proposed method allows performing the content uniformity testing of the studied drugs in their tablets by using the official United States Pharmacopeia (USP) guidelines. Statistical comparisons of the results with those of the reported methods revealed excellent agreement and indicated no significant difference in accuracy and precision.


Subject(s)
Adrenergic Agonists/analysis , Spectrometry, Fluorescence/methods , Adrenergic Agonists/chemistry , Etilefrine/analysis , Etilefrine/chemistry , Hydrogen-Ion Concentration , Isoxsuprine/analysis , Isoxsuprine/chemistry , Reproducibility of Results , Ritodrine/analysis , Ritodrine/chemistry , Sensitivity and Specificity , Sodium Dodecyl Sulfate/chemistry , Solvents/chemistry , Surface-Active Agents/chemistry , Tablets/analysis , Tablets/chemistry , Temperature , Time Factors
13.
J Ocul Pharmacol Ther ; 32(8): 534-547, 2016 10.
Article in English | MEDLINE | ID: mdl-27574786

ABSTRACT

Agonists and antagonists of various subtypes of G protein coupled adenosine receptors (ARs), P2Y receptors (P2YRs), and ATP-gated P2X receptor ion channels (P2XRs) are under consideration as agents for the treatment of ocular diseases, including glaucoma and dry eye. Numerous nucleoside and nonnucleoside modulators of the receptors are available as research tools and potential therapeutic molecules. Three of the 4 subtypes of ARs have been exploited with clinical candidate molecules for treatment of the eye: A1, A2A, and A3. An A1AR agonist is in clinical trials for glaucoma, A2AAR reduces neuroinflammation, A3AR protects retinal ganglion cells from apoptosis, and both A3AR agonists and antagonists had been reported to lower intraocular pressure (IOP). Extracellular concentrations of endogenous nucleotides, including dinucleoside polyphosphates, are increased in pathological states, activating P2Y and P2XRs throughout the eye. P2YR agonists, including P2Y2 and P2Y6, lower IOP. Antagonists of the P2X7R prevent the ATP-induced neuronal apoptosis in the retina. Thus, modulators of the purinome in the eye might be a source of new therapies for ocular diseases.


Subject(s)
Adrenergic Agonists/pharmacology , Dry Eye Syndromes/drug therapy , Glaucoma/drug therapy , Receptors, Purinergic/metabolism , Retinal Ganglion Cells/drug effects , Retinal Ganglion Cells/metabolism , Adrenergic Agonists/chemistry , Dry Eye Syndromes/metabolism , Glaucoma/metabolism , Humans , Ligands , Molecular Structure , Structure-Activity Relationship
14.
J Org Chem ; 80(5): 2937-41, 2015 Mar 06.
Article in English | MEDLINE | ID: mdl-25689345

ABSTRACT

A novel methodology to produce highly enantioenriched N-(2-ethylamino)-ß-amino alcohols was developed. These compounds were obtained from O-(α-bromoacyl) cyanohydrins, which were synthesized by the minor enantiomer methodology employing a Lewis acid and a biocatalyst, followed by nucleophilic substitution with amines and reduction. The importance of the developed methodology was demonstrated by completing a highly enantioselective total synthesis of the ß3-adrenergic receptor agonist Solabegron.


Subject(s)
Amino Alcohols/chemical synthesis , Aniline Compounds/chemical synthesis , Benzoates/chemical synthesis , Biphenyl Compounds/chemical synthesis , Lewis Acids/chemistry , Nitriles/chemistry , Acylation , Adrenergic Agonists/chemical synthesis , Adrenergic Agonists/chemistry , Amino Alcohols/chemistry , Aniline Compounds/chemistry , Benzoates/chemistry , Biocatalysis , Biphenyl Compounds/chemistry , Molecular Structure , Stereoisomerism
15.
Spectrochim Acta A Mol Biomol Spectrosc ; 137: 841-55, 2015 Feb 25.
Article in English | MEDLINE | ID: mdl-25277632

ABSTRACT

The Fourier transform infrared, FT-Raman, UV and NMR spectra of Ternelin have been recorded and analyzed. Harmonic vibrational frequencies have been investigated with the help of HF with 6-31G (d,p) and B3LYP with 6-31G (d,p) and LANL2DZ basis sets. The (1)H and (13)C nuclear magnetic resonance (NMR) chemical shifts of the molecule were calculated by GIAO method. The polarizability (α) and the first hyperpolarizability (ß) values of the investigated molecule have been computed using DFT quantum mechanical calculations. Stability of the molecule arising from hyper conjugative interactions, and charge delocalization has been analyzed using natural bond orbital (NBO) analysis. The electron density-based local reactivity descriptors such as Fukui functions were calculated to explain the chemical selectivity or reactivity site in Ternelin. Finally the calculated results were compared to simulated infrared and Raman spectra of the title compound which show good agreement with observed spectra. Molecular docking studies have been carried out in the active site of Ternelin and reactivity with ONIOM was also investigated.


Subject(s)
Adrenergic Agonists/chemistry , Heterocyclic Compounds/chemistry , Imidazoles/chemistry , Computer Simulation , Hydrogen/chemistry , Hydrogen Bonding , Magnetic Resonance Spectroscopy , Models, Molecular , Molecular Conformation , Quantum Theory , Spectrophotometry, Ultraviolet , Spectroscopy, Fourier Transform Infrared , Vibration
17.
PLoS One ; 8(9): e74092, 2013.
Article in English | MEDLINE | ID: mdl-24058518

ABSTRACT

G-protein coupled receptors (GPCRs) are a superfamily of cell signaling membrane proteins that include >750 members in the human genome alone. They are the largest family of drug targets. The vast diversity and relevance of GPCRs contrasts with the paucity of structures available: only 21 unique GPCR structures have been experimentally determined as of the beginning of 2013. User-friendly modeling and small molecule docking tools are thus in great demand. While both GPCR structural predictions and docking servers exist separately, with GOMoDo (GPCR Online Modeling and Docking), we provide a web server to seamlessly model GPCR structures and dock ligands to the models in a single consistent pipeline. GOMoDo can automatically perform template choice, homology modeling and either blind or information-driven docking by combining together proven, state of the art bioinformatic tools. The web server gives the user the possibility of guiding the whole procedure. The GOMoDo server is freely accessible at http://molsim.sci.univr.it/gomodo.


Subject(s)
Adrenergic Agonists/chemistry , Adrenergic Antagonists/chemistry , Molecular Docking Simulation , Receptors, Adrenergic, alpha-2/chemistry , Receptors, Adrenergic, beta-2/chemistry , Software , Computational Biology , Databases, Protein , Humans , Internet , Ligands , Molecular Dynamics Simulation , Protein Conformation
18.
Article in English | MEDLINE | ID: mdl-23872161

ABSTRACT

Due to the lack of sensitivity in current methods for the determination of fenoterol (Fen), a rapid LC-MS/MS method was developed for the determination of (R,R')-Fen and (R,R';S,S')-Fen in plasma and urine. The method was fully validated and was linear from 50pg/ml to 2000pg/ml for plasma and from 2.500ng/ml to 160ng/ml for urine with a lower limit of quantitation of 52.8pg/ml in plasma. The coefficient of variation was <15% for the high QC standards and <10% for the low QC standards in plasma and was <15% for the high and low QC standards in urine. The relative concentrations of (R,R')-Fen and (S,S')-Fen were determined using a chirobiotic T chiral stationary phase. The method was used to determine the concentration of (R,R')-Fen in plasma and urine samples obtained in an oral cross-over study of (R,R')-Fen and (R,R';S,S')-Fen formulations. The results demonstrated a potential pre-systemic enantioselective interaction in which the (S,S')-Fen reduces the sulfation of the active (R,R')-Fen. The data suggest that a non-racemic mixture of the Fen enantiomers may provide better bioavailability of the active (R,R')-Fen for use in the treatment of cardiovascular disease.


Subject(s)
Adrenergic Agonists/blood , Adrenergic Agonists/urine , Chromatography, High Pressure Liquid/methods , Fenoterol/blood , Fenoterol/urine , Tandem Mass Spectrometry/methods , Adrenergic Agonists/chemistry , Fenoterol/chemistry , Humans , Sensitivity and Specificity , Stereoisomerism
19.
Curr Med Chem ; 18(18): 2791-815, 2011.
Article in English | MEDLINE | ID: mdl-21649583

ABSTRACT

The purine ribonucleoside adenosine (Ado) has been recognized for its regulatory functions in situations of cellular stress like ischemia, hypoxia and inflammation. The importance of extracellular Ado as a modulator in the immune system is a theme of great appreciation and the focus of recent increasing interest in the field of gastrointestinal inflammation. In this review, the different aspects of Ado signaling during inflammatory responses in the gut are discussed, considering the contribution of the four known Ado receptors (ARs; A(1), A(2A), A(2B), and A(3)), their mechanisms and expression patterns. Activation of these receptors in epithelial cells as well as in immune cells recruited to the inflamed intestinal mucosa determines the overall effect, ranging from a protective, anti-inflammatory modulation to a strong pro-inflammatory induction. Here we present the current advances in agonists and antagonists development and their potential therapeutic application studied in animal models of intestinal inflammation. In addition, alternative complementary approaches to manipulate such a complex signaling system are discussed, for example, the use of AR allosteric modulators or interference with Ado metabolism. Special features of the gut environment are taken into account: the contribution of diet components; the involvement of Ado in intestinal infections; the interactions with the gut microbiome, particularly, the recent exciting finding that an intestinal bacterium can directly produce extracellular Ado in response to host defense mechanisms in an inflammation scenario. Understanding each component of this dynamic system will broaden the possibilities for applying Ado signaling as a therapeutic target in gut inflammation.


Subject(s)
Adenosine/therapeutic use , Adrenergic Agonists/therapeutic use , Adrenergic Antagonists/therapeutic use , Inflammatory Bowel Diseases/drug therapy , Receptors, Purinergic P1/metabolism , Adenosine/chemistry , Adenosine/pharmacology , Adrenergic Agonists/chemistry , Adrenergic Agonists/pharmacology , Adrenergic Antagonists/chemistry , Adrenergic Antagonists/pharmacology , Animals , Humans , Inflammatory Bowel Diseases/metabolism , Inflammatory Bowel Diseases/pathology , Structure-Activity Relationship
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