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1.
Bioresour Technol ; 402: 130831, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38734262

ABSTRACT

Mercury (Hg), particularly organic mercury, poses a global concern due to its pronounced toxicity and bioaccumulation. Bioremediation of organic mercury in high-salt wastewater faces challenges due to the growth limitations imposed by elevated Cl- and Na+ concentrations on microorganisms. In this study, an isolated marine bacterium Alteromonas macleodii KD01 was demonstrated to degrade methylmercury (MeHg) efficiently in seawater and then was applied to degrade organic mercury (MeHg, ethylmercury, and thimerosal) in simulated high-salt wastewater. Results showed that A. macleodii KD01 can rapidly degrade organic mercury (within 20 min) even at high concentrations (>10 ng/mL), volatilizing a portion of Hg from the wastewater. Further analysis revealed an increased transcription of organomercury lyase (merB) with rising organic mercury concentrations during the exposure process, suggesting the involvement of mer operon (merA and merB). These findings highlight A. macleodii KD01 as a promising candidate for addressing organic mercury pollution in high-salt wastewater.


Subject(s)
Alteromonas , Biodegradation, Environmental , Mercury , Mercury/metabolism , Alteromonas/metabolism , Wastewater/chemistry , Water Pollutants, Chemical/metabolism , Seawater/microbiology , Aerobiosis , Methylmercury Compounds/metabolism
2.
Environ Sci Technol ; 57(49): 20595-20604, 2023 Dec 12.
Article in English | MEDLINE | ID: mdl-38007712

ABSTRACT

Microbial reduction plays a crucial role in Hg redox and the global cycle. Although intracellular Hg(II) reduction mediated by MerA protein is well documented, it is still unclear whether or how bacteria reduce Hg(II) extracellularly without its internalization. Herein, for the first time, we discovered the extracellular reduction of Hg(II) by a widely distributed aerobic marine bacterium Alteromonas sp. KD01 through a superoxide-dependent mechanism. The generation of superoxide by Alteromonas sp. KD01 was determined using 3-bis(2-methoxy-4-nitro-5-sulfophenyl)-2H-tetrazolium-5-carboxanilide and methyl cypridina luciferin analogue as probes via UV-vis and chemiluminescence detection, respectively. The results demonstrated that Hg(II) reduction was inhibited by superoxide scavengers (superoxide dismutase (SOD) and Cu(NO3)2) or inhibitors of reduced nicotinamide adenine dinucleotide (NADH) oxidoreductases. In contrast, the addition of NADH significantly improved superoxide generation and, in turn, Hg(II) reduction. Direct evidence of superoxide-mediated Hg(II) reduction was provided by the addition of superoxide using KO2 in deionized water and seawater. Moreover, we observed that even superoxide at an environmental concentration of 9.6 ± 0.5 nM from Alteromonas sp. KD01 (5.4 × 106 cells mL-1) was capable of significantly reducing Hg(II). Our findings provide a greater understanding of Hg(II) reduction by superoxide from heterotrophic bacteria and eukaryotic phytoplankton in diverse aerobic environments, including surface water, sediment, and soil.


Subject(s)
Alteromonas , Mercury , Superoxides/metabolism , Alteromonas/metabolism , NAD/metabolism , Bacteria/metabolism , Water
3.
Nat Commun ; 14(1): 6517, 2023 10 16.
Article in English | MEDLINE | ID: mdl-37845226

ABSTRACT

The host recognition modules encoding the injection machinery and receptor binding proteins (RBPs) of bacteriophages are predisposed to mutation and recombination to maintain infectivity towards co-evolving bacterial hosts. In this study, we reveal how Alteromonas mediterranea schitovirus A5 shares its host recognition module, including tail fiber and cognate chaperone, with phages from distantly related families including Alteromonas myovirus V22. While the V22 chaperone is essential for producing active tail fibers, here we demonstrate production of functional A5 tail fibers regardless of chaperone co-expression. AlphaFold-generated models of tail fiber and chaperone pairs from phages A5, V22, and other Alteromonas phages reveal how amino acid insertions within both A5-like proteins results in a knob domain duplication in the tail fiber and a chaperone ß-hairpin "tentacle" extension. These structural modifications are linked to differences in chaperone dependency between the A5 and V22 tail fibers. Structural similarity between the chaperones and intramolecular chaperone domains of other phage RBPs suggests an additional function of these chaperones as transient fiber "caps". Finally, our identification of homologous host recognition modules from morphologically distinct phages implies that horizontal gene transfer and recombination events between unrelated phages may be a more common process than previously thought among Caudoviricetes phages.


Subject(s)
Alteromonas , Bacteriophages , Humans , Bacteriophages/metabolism , Alteromonas/genetics , Alteromonas/metabolism , Molecular Chaperones/genetics , Molecular Chaperones/metabolism , Carrier Proteins/metabolism , Genome, Viral
4.
ISME J ; 16(2): 358-369, 2022 02.
Article in English | MEDLINE | ID: mdl-34341506

ABSTRACT

It is now widely accepted that siderophores play a role in marine iron biogeochemical cycling. However, the mechanisms by which siderophores affect the availability of iron from specific sources and the resulting significance of these processes on iron biogeochemical cycling as a whole have remained largely untested. In this study, we develop a model system for testing the effects of siderophore production on iron bioavailability using the marine copiotroph Alteromonas macleodii ATCC 27126. Through the generation of the knockout cell line ΔasbB::kmr, which lacks siderophore biosynthetic capabilities, we demonstrate that the production of the siderophore petrobactin enables the acquisition of iron from mineral sources and weaker iron-ligand complexes. Notably, the utilization of lithogenic iron, such as that from atmospheric dust, indicates a significant role for siderophores in the incorporation of new iron into marine systems. We have also detected petrobactin, a photoreactive siderophore, directly from seawater in the mid-latitudes of the North Pacific and have identified the biosynthetic pathway for petrobactin in bacterial metagenome-assembled genomes widely distributed across the global ocean. Together, these results improve our mechanistic understanding of the role of siderophore production in iron biogeochemical cycling in the marine environment wherein iron speciation, bioavailability, and residence time can be directly influenced by microbial activities.


Subject(s)
Alteromonas , Siderophores , Alteromonas/metabolism , Benzamides , Iron/metabolism , Oceans and Seas , Siderophores/metabolism
5.
Microbiology (Reading) ; 168(11)2022 11.
Article in English | MEDLINE | ID: mdl-36748580

ABSTRACT

Alteromonas macleodii is a marine heterotrophic bacterium with widespread distribution - from temperate to tropical oceans, and from surface to deep waters. Strains of A. macleodii exhibit considerable genomic and metabolic variability, and can grow rapidly on diverse organic compounds. A. macleodii is a model organism for the study of population genomics, physiological adaptations and microbial interactions, with individual genomes encoding diverse phenotypic traits influenced by recombination and horizontal gene transfer.


Subject(s)
Alteromonas , Genome, Bacterial , Genome, Bacterial/genetics , Alteromonas/genetics , Alteromonas/metabolism , Phenotype , Adaptation, Physiological , Phylogeny , Seawater/microbiology
6.
Dalton Trans ; 50(46): 17215-17227, 2021 Nov 30.
Article in English | MEDLINE | ID: mdl-34783812

ABSTRACT

Exopolysaccharide (EPS) derivatives, produced by Alteromonas infernus bacterium, showed anti-metastatic properties in osteosarcoma (bone tumor). These EPSs could be employed as new drug delivery systems for therapeutic uses. They may represent a new class of ligands to be combined in a theranostic approach with fluorescent metals, such as Eu(III), to serve as imaging probe. The goal of this work was to investigate the feasibility of such coupling by time-resolved laser-induced fluorescence spectroscopy (TRLFS). Since these EPSs are polyelectrolytes their conformation could affect the complexation properties. Thus, viscosimetric measurements were performed as a function of their concentration as well as the background electrolyte concentration. Polysaccharides conformation exhibited a lower hydrodynamic volume for the highest ionic strengths. The resulting random-coiled conformation could affect the complexation with metal for high concentration but no change was evidenced when increasing europium concentration. Two sites of complexation of Eu(III) were evidenced by TRLFS in heparin, whereas only one site was evidenced in two modified EPSs produced from Alteromonas infernus.


Subject(s)
Alteromonas/chemistry , Coordination Complexes/chemistry , Europium/chemistry , Fluorescent Dyes/chemistry , Polysaccharides/chemistry , Theranostic Nanomedicine , Alteromonas/metabolism , Coordination Complexes/chemical synthesis , Fluorescent Dyes/chemical synthesis , Polysaccharides/biosynthesis , Spectrometry, Fluorescence , Viscosity
7.
Bioorg Med Chem ; 42: 116254, 2021 07 15.
Article in English | MEDLINE | ID: mdl-34119697

ABSTRACT

Microbes use signaling factors for intraspecies and interspecies communications. While many intraspecies signaling factors have been found and characterized, discovery of factors for interspecies communication is lagging behind. To facilitate the discovery of such factors, we explored the potential of a mixed microbial culture (MMC) derived from wheatgrass, in which heterogeneity of this microbial community might elicit signaling factors for interspecies communication. The stability of Wheatgrass MMC in terms of community structure and metabolic output was first characterized by 16S ribosomal RNA amplicon sequencing and liquid chromatography/mass spectrometry (LC/MS), respectively. In addition, detailed MS analyses led to the identification of 12-hydroxystearic acid (12-HSA) as one of the major metabolites produced by Wheatgrass MMC. Stereochemical analysis revealed that Wheatgrass MMC produces mostly the (R)-isomer, although a small amount of the (S)-isomer was also observed. Furthermore, 12-HSA was found to modulate planktonic growth and biofilm formation of various marine bacterial strains. The current study suggests that naturally derived MMCs could serve as a simple and reproducible platform to discover potential signaling factors for interspecies communication. In addition, the study indicates that hydroxylated long-chain fatty acids, such as 12-HSA, may constitute a new class of interspecies signaling factors.


Subject(s)
Alteromonas/cytology , Caulobacteraceae/cytology , Cell Culture Techniques , Plants/microbiology , Stearic Acids/analysis , Alteromonas/isolation & purification , Alteromonas/metabolism , Biofilms , Caulobacteraceae/metabolism , Chromatography, Liquid , Mass Spectrometry , Molecular Structure , Stearic Acids/metabolism
8.
Mar Drugs ; 19(3)2021 Mar 23.
Article in English | MEDLINE | ID: mdl-33806830

ABSTRACT

Antimetastatic properties on both murine and human osteosarcoma cell lines (POS-1 and KHOS) have been evidenced using exopolysaccharide (EPS) derivatives, produced by Alteromonas infernus bacterium. These derivatives had no significant effect on the cell cycle neither a pro-apoptotic effect on osteosarcoma cells. Based on this observation, these EPSs could be employed as new drug delivery systems for therapeutic uses. A theranostic approach, i.e., combination of a predictive biomarker with a therapeutic agent, has been developed notably by combining with true pair of theranostic radionuclides, such as scandium 47Sc/44Sc. However, it is crucial to ensure that, once complexation is done, the biological properties of the vector remain intact, allowing the molecular tropism of the ligand to recognize its molecular target. It is important to assess if the biological properties of EPS evidenced on osteosarcoma cell lines remain when scandium is complexed to the polymers and can be extended to other cancer cell types. Scandium-EPS complexes were thus tested in vitro on human cell lines: MNNG/HOS osteosarcoma, A375 melanoma, A549 lung adenocarcinoma, U251 glioma, MDA231 breast cancer, and Caco2 colon cancer cells. An xCELLigence Real Cell Time Analysis (RTCA) technology assay was used to monitor for 160 h, the proliferation kinetics of the different cell lines. The tested complexes exhibited an anti-proliferative effect, this effect was more effective compared to EPS alone. This increase of the antiproliferative properties was explained by a change in conformation of EPS complexes due to their polyelectrolyte nature that was induced by complexation. Alterations of both growth factor-receptor signaling, and transmembrane protein interactions could be the principal cause of the antiproliferative effect. These results are very promising and reveal that EPS can be coupled to scandium for improving its biological effects and also suggesting that no major structural modification occurs on the ligand.


Subject(s)
Alteromonas/metabolism , Cell Proliferation/drug effects , Neoplasms/drug therapy , Polysaccharides, Bacterial/pharmacology , Scandium/pharmacology , A549 Cells , Animals , Caco-2 Cells , Coordination Complexes , Heparin/pharmacology , Humans , Kinetics , Mice , Neoplasms/pathology , Polysaccharides, Bacterial/isolation & purification
9.
J Nat Prod ; 83(9): 2696-2705, 2020 09 25.
Article in English | MEDLINE | ID: mdl-32869646

ABSTRACT

Co-cultivation has been used as a promising tool to turn on or up-regulate cryptic biosynthetic pathways for microbial natural product discovery. Recently, a modified culturing strategy similar to co-cultivation was investigated, where heat-killed inducer cultures were supplemented to the culture medium of producer fermentations to induce cryptic pathways. In the present study, the repeatability and effectiveness of both methods in turning on cryptic biosynthetic pathways were unbiasedly assessed using UHPLC-HRESIMS-based metabolomics analysis. Both induction methods had good repeatability, and they resulted in very different induced metabolites from the tested producers. Co-cultivation generated more induced mass features than the heat-killed inducer cultures, while both methods resulted in the induction of mass features not observed using the other induction method. As examples, pathways leading to two new natural products, N-carbamoyl-2-hydroxy-3-methoxybenzamide (1) and carbazoquinocin G (5), were induced and up-regulated through co-culturing a producer Streptomyces sp. RKND-216 with inducers Alteromonas sp. RKMC-009 and M. smegmatis ATCC 120515, respectively.


Subject(s)
Metabolic Networks and Pathways , Metabolome , Alteromonas/metabolism , Antineoplastic Agents/pharmacology , Bacteria/drug effects , Biological Products , Cell Line, Tumor , Chromatography, High Pressure Liquid , Coculture Techniques , Drug Discovery , Hot Temperature , Humans , Microbial Sensitivity Tests , Mycobacterium smegmatis/drug effects , Reproducibility of Results , Spectrometry, Mass, Electrospray Ionization , Sterilization , Streptomyces/metabolism
10.
Mar Drugs ; 18(9)2020 Aug 27.
Article in English | MEDLINE | ID: mdl-32867255

ABSTRACT

Two Alteromonas sp. strains isolated from deep seawater were grown to promote the production of exopolysaccharides (EPS, E611 and E805), which were incorporated into chitosan solutions to develop films. The combination of the major marine polysaccharides (chitosan and the isolated bacterial EPS) resulted in the formation of homogenous, transparent, colorless films, suggesting good compatibility between the two components of the film-forming formulation. With regards to optical properties, the films showed low values of gloss, in the range of 5-10 GU, indicating the formation of non-glossy and rough surfaces. In addition to the film surface, both showed hydrophobic character, with water contact angles higher than 100 º, regardless of EPS addition. Among the two EPS under analysis, chitosan films with E805 showed better mechanical performance, leading to resistant, flexible, easy to handle films.


Subject(s)
Alteromonas/metabolism , Chitosan/chemistry , Polysaccharides, Bacterial/chemistry , Color , Drug Compounding , Hydrophobic and Hydrophilic Interactions , Polysaccharides, Bacterial/isolation & purification , Seawater/microbiology , Surface Properties , Tensile Strength , Water Microbiology
11.
mBio ; 11(4)2020 08 11.
Article in English | MEDLINE | ID: mdl-32788385

ABSTRACT

Many microorganisms produce resting cells with very low metabolic activity that allow them to survive phases of prolonged nutrient or energy stress. In cyanobacteria and some eukaryotic phytoplankton, the production of resting stages is accompanied by a loss of photosynthetic pigments, a process termed chlorosis. Here, we show that a chlorosis-like process occurs under multiple stress conditions in axenic laboratory cultures of Prochlorococcus, the dominant phytoplankton linage in large regions of the oligotrophic ocean and a global key player in ocean biogeochemical cycles. In Prochlorococcus strain MIT9313, chlorotic cells show reduced metabolic activity, measured as C and N uptake by Nanoscale secondary ion mass spectrometry (NanoSIMS). However, unlike many other cyanobacteria, chlorotic Prochlorococcus cells are not viable and do not regrow under axenic conditions when transferred to new media. Nevertheless, cocultures with a heterotrophic bacterium, Alteromonas macleodii HOT1A3, allowed Prochlorococcus to survive nutrient starvation for months. We propose that reliance on co-occurring heterotrophic bacteria, rather than the ability to survive extended starvation as resting cells, underlies the ecological success of ProchlorococcusIMPORTANCE The ability of microorganisms to withstand long periods of nutrient starvation is key to their survival and success under highly fluctuating conditions that are common in nature. Therefore, one would expect this trait to be prevalent among organisms in the nutrient-poor open ocean. Here, we show that this is not the case for Prochlorococcus, a globally abundant and ecologically important marine cyanobacterium. Instead, Prochlorococcus relies on co-occurring heterotrophic bacteria to survive extended phases of nutrient and light starvation. Our results highlight the power of microbial interactions to drive major biogeochemical cycles in the ocean and elsewhere with consequences at the global scale.


Subject(s)
Anemia, Hypochromic , Microbial Interactions , Nutrients , Prochlorococcus/metabolism , Alteromonas/metabolism , Axenic Culture , Genome, Bacterial , Heterotrophic Processes , Microbial Viability , Phylogeny , Prochlorococcus/growth & development , Seawater/microbiology
12.
Sci Rep ; 10(1): 809, 2020 01 21.
Article in English | MEDLINE | ID: mdl-31964928

ABSTRACT

Ecological differentiation between strains of bacterial species is shaped by genomic and metabolic variability. However, connecting genotypes to ecological niches remains a major challenge. Here, we linked bacterial geno- and phenotypes by contextualizing pangenomic, exometabolomic and physiological evidence in twelve strains of the marine bacterium Alteromonas macleodii, illuminating adaptive strategies of carbon metabolism, microbial interactions, cellular communication and iron acquisition. In A. macleodii strain MIT1002, secretion of amino acids and the unique capacity for phenol degradation may promote associations with Prochlorococcus cyanobacteria. Strain 83-1 and three novel Pacific isolates, featuring clonal genomes despite originating from distant locations, have profound abilities for algal polysaccharide utilization but without detrimental implications for Ecklonia macroalgae. Degradation of toluene and xylene, mediated via a plasmid syntenic to terrestrial Pseudomonas, was unique to strain EZ55. Benzoate degradation by strain EC673 related to a chromosomal gene cluster shared with the plasmid of A. mediterranea EC615, underlining that mobile genetic elements drive adaptations. Furthermore, we revealed strain-specific production of siderophores and homoserine lactones, with implications for nutrient acquisition and cellular communication. Phenotypic variability corresponded to different competitiveness in co-culture and geographic distribution, indicating linkages between intraspecific diversity, microbial interactions and biogeography. The finding of "ecological microdiversity" helps understanding the widespread occurrence of A. macleodii and contributes to the interpretation of bacterial niche specialization, population ecology and biogeochemical roles.


Subject(s)
Alteromonas/physiology , Adaptation, Biological , Alteromonas/metabolism , Biological Variation, Population , Ecosystem , Ecotype , Genetic Variation , Genome, Bacterial , Iron/metabolism , Pacific Ocean , Phylogeny , Plasmids , Polysaccharides/metabolism , Prochlorococcus/physiology , Seawater/microbiology , Seaweed/metabolism , Secondary Metabolism
13.
Molecules ; 24(24)2019 Dec 10.
Article in English | MEDLINE | ID: mdl-31835604

ABSTRACT

Questiomycin A (1) along with three new compounds, questiomycins C-E (2-4), were isolated from culture of Alteromonas sp. D, an algicidal marine bacterium, guided by algal lethality assay using the raphidophyte, Chattonella antiqua, one of the causative organisms of harmful algal bloom. The structures of 1-4 were assigned on the basis of their spectrometric and spectroscopic data. Compounds 1 to 4 exhibited algicidal activity against C. antiqua with LC50 values ranging from 0.18 to 6.37 M. Co-cultivation experiment revealed that 1 was produced only when the microalgae and the bacterium are in close contact, suggesting that some interactions between them trigger the biosynthesis of questiomycins. These results suggested that the algicidal bacteria such as Alteromonas sp. D can control microalgae chemically in marine ecosystem.


Subject(s)
Alteromonas/metabolism , Anti-Bacterial Agents/biosynthesis , Aquatic Organisms/metabolism , Oxazines/metabolism , Anti-Bacterial Agents/chemistry , Anti-Bacterial Agents/isolation & purification , Chromatography, Liquid , Cues , Harmful Algal Bloom , Magnetic Resonance Spectroscopy , Mass Spectrometry , Microbial Sensitivity Tests , Molecular Structure , Oxazines/chemistry , Oxazines/isolation & purification
14.
Mar Drugs ; 17(10)2019 Oct 08.
Article in English | MEDLINE | ID: mdl-31597240

ABSTRACT

Ulvan lyases can degrade ulvan to oligosaccharides with potent biological activity. A new ulvan lyase gene, ALT3695, was identified in Alteromonas sp. A321. Soluble expression of ALT3695 was achieved in Escherichia coli BL21 (DE3). The 1314-bp gene encoded a protein with 437 amino acid residues. The amino acid sequence of ALT3695 exhibited low sequence identity with polysaccharide lyase family 25 (PL25) ulvan lyases from Pseudoalteromonas sp. PLSV (64.14% identity), Alteromonas sp. LOR (62.68% identity), and Nonlabens ulvanivorans PLR (57.37% identity). Recombinant ALT3695 was purified and the apparent molecular weight was about 53 kDa, which is different from that of other polysaccharide-degrading enzymes identified in Alteromonas sp. A321. ALT3695 exhibited maximal activity in 50 mM Tris-HCl buffer at pH 8.0 and 50 °C. ALT3695 was relatively thermostable, as 90% activity was observed after incubation at 40 °C for 3 h. The Km and Vmax values of ALT3695 towards ulvan were 0.43 mg·mL-1 and 0.11 µmol·min-1·mL-1, respectively. ESI-MS analysis showed that enzymatic products were mainly disaccharides and tetrasaccharides. This study reports a new PL25 family ulvan lyase, ALT3695, with properties that suggest its great potential for the preparation of ulvan oligosaccharides.


Subject(s)
Alteromonas/metabolism , Polysaccharide-Lyases/metabolism , Polysaccharides/metabolism , Amino Acid Sequence , Cloning, Molecular/methods , Flavobacteriaceae/metabolism , Hydrogen-Ion Concentration , Oligosaccharides/metabolism , Pseudoalteromonas/metabolism
15.
Biochem Biophys Res Commun ; 514(2): 422-427, 2019 06 25.
Article in English | MEDLINE | ID: mdl-31053303

ABSTRACT

Recent studies have reported abundant presence of bacterial extracellular membrane vesicles in the marine environment. However, the ecological significance of these bacterial vesicles in the marine environment is only beginning to be explored. In present study, for the first time we report and characterize membrane vesicles secreted by a seaweed associated bacterium, Alteromonas macleodii KS62. Proteomics studies revealed that the vesicle proteome was rich in hydrolytic enzymes (30%) like glycoside hydrolases, proteases, sulphatases, lipases, nucleases and phosphatases. Zymography experiments and enzyme assays established that the vesicles carry active κ-carrageenan degrading enzymes. κ-carrageenan is a major polysaccharide of cell walls of certain red seaweeds like Kappaphycus. Purified membrane vesicles were successfully able to degrade Kappaphycus biomass. Based on these results, we discuss how the hydrolase-rich vesicles may play a role in red seaweed cell wall degradation so that the bacteria can invade and colonise the seaweed biomass establishing a saprophytic lifestyle. We also discuss the role of these vesicles in nutrient acquisition and their ecological significance in the marine environment.


Subject(s)
Alteromonas/cytology , Extracellular Vesicles/chemistry , Extracellular Vesicles/metabolism , Seaweed/microbiology , Alteromonas/enzymology , Alteromonas/metabolism , Bacterial Proteins/analysis , Bacterial Proteins/metabolism , Biomass , Carrageenan/metabolism , Cell Wall/metabolism , Extracellular Vesicles/enzymology , Glycoside Hydrolases/analysis , Glycoside Hydrolases/metabolism , Hydrolysis , Nutrients/metabolism , Proteome/analysis , Proteome/metabolism , Proteomics , Seaweed/chemistry , Seaweed/metabolism
16.
Sci Rep ; 9(1): 1215, 2019 02 04.
Article in English | MEDLINE | ID: mdl-30718637

ABSTRACT

The Alteromonas stellipolaris strains PQQ-42 and PQQ-44, previously isolated from a fish hatchery, have been selected on the basis of their strong quorum quenching (QQ) activity, as well as their ability to reduce Vibrio-induced mortality on the coral Oculina patagonica. In this study, the genome sequences of both strains were determined and analyzed in order to identify the mechanism responsible for QQ activity. Both PQQ-42 and PQQ-44 were found to degrade a wide range of N-acylhomoserine lactone (AHL) QS signals, possibly due to the presence of an aac gene which encodes an AHL amidohydrolase. In addition, the different colony morphologies exhibited by the strains could be related to the differences observed in genes encoding cell wall biosynthesis and exopolysaccharide (EPS) production. The PQQ-42 strain produces more EPS (0.36 g l-1) than the PQQ-44 strain (0.15 g l-1), whose chemical compositions also differ. Remarkably, PQQ-44 EPS contains large amounts of fucose, a sugar used in high-value biotechnological applications. Furthermore, the genome of strain PQQ-42 contained a large non-ribosomal peptide synthase (NRPS) cluster with a previously unknown genetic structure. The synthesis of enzymes and other bioactive compounds were also identified, indicating that PQQ-42 and PQQ-44 could have biotechnological applications.


Subject(s)
Alteromonas/genetics , Alteromonas/metabolism , Acyl-Butyrolactones/metabolism , Amidohydrolases/metabolism , Bacterial Proteins/metabolism , Biotechnology , Genomics , Phenotype , Quorum Sensing/genetics
17.
Mar Drugs ; 16(12)2018 Nov 27.
Article in English | MEDLINE | ID: mdl-30486362

ABSTRACT

The bacterium Alteromonas sp. ML52, isolated from deep-sea water, was found to synthesize an intracellular cold-adapted ß-galactosidase. A novel ß-galactosidase gene from strain ML52, encoding 1058 amino acids residues, was cloned and expressed in Escherichia coli. The enzyme belongs to glycoside hydrolase family 2 and is active as a homotetrameric protein. The recombinant enzyme had maximum activity at 35 °C and pH 8 with a low thermal stability over 30 °C. The enzyme also exhibited a Km of 0.14 mM, a Vmax of 464.7 U/mg and a kcat of 3688.1 S-1 at 35 °C with 2-nitrophenyl-ß-d-galactopyranoside as a substrate. Hydrolysis of lactose assay, performed using milk, indicated that over 90% lactose in milk was hydrolyzed after incubation for 5 h at 25 °C or 24 h at 4 °C and 10 °C, respectively. These properties suggest that recombinant Alteromonas sp. ML52 ß-galactosidase is a potential biocatalyst for the lactose-reduced dairy industry.


Subject(s)
Alteromonas/metabolism , Aquatic Organisms/metabolism , Biocatalysis , Cold Temperature , beta-Galactosidase/metabolism , Alteromonas/genetics , Animals , Aquatic Organisms/genetics , Cloning, Molecular , Dairying/methods , Enzyme Assays/methods , Enzyme Stability , Galactose/metabolism , Hydrogen-Ion Concentration , Lactose/metabolism , Milk/chemistry , Protein Multimerization , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/isolation & purification , Recombinant Proteins/metabolism , Substrate Specificity , beta-Galactosidase/chemistry , beta-Galactosidase/genetics , beta-Galactosidase/isolation & purification
18.
Carbohydr Polym ; 188: 101-107, 2018 May 15.
Article in English | MEDLINE | ID: mdl-29525145

ABSTRACT

Polysaccharides have attracted much attention due to their interesting physico-chemical and also biological properties that are explored in food, cosmetic and pharmaceutical industries. GY785 exopolysaccharide (EPS) presenting an unusual structure is secreted by the deep-sea hydrothermal bacterium, Alteromonas infernus. Low-molecular weight (LMW) derivatives obtained by chemical depolymerization of the native high molecular weight (HMW) EPS were previously shown to exhibit biological properties similar to glycosaminoglycans (GAG). In the present study, in order to generate well defined derivatives with a better control of the depolymerization, an enzymatic approach was applied for the first time. Various commercially available enzymes were firstly screened for their depolymerizing activities, however none of them was able to degrade the polysaccharide. Enzymatic assays performed with A. infernus protein extracts have shown that the bacterium produces by itself endogenous enzymes able to depolymerize its own EPS. The oligosaccharides released by the enzymes were analyzed and their structures allowed to assess that the protein extract contains several depolymerizing activities.


Subject(s)
Alteromonas/metabolism , Polysaccharides, Bacterial/metabolism , Glycosaminoglycans/metabolism , Mass Spectrometry , Polymerization
19.
ISME J ; 12(4): 981-996, 2018 04.
Article in English | MEDLINE | ID: mdl-29335641

ABSTRACT

Interactions between co-existing microorganisms deeply affect the physiology of the involved organisms and, ultimately, the function of the ecosystem as a whole. Copiotrophic Alteromonas are marine gammaproteobacteria that thrive during the late stages of phytoplankton blooms in the marine environment and in laboratory co-cultures with cyanobacteria such as Trichodesmium. The response of this heterotroph to the sometimes rapid and transient changes in nutrient supply when the phototroph crashes is not well understood. Here, we isolated and sequenced the strain Alteromonas macleodii str. Te101 from a laboratory culture of Trichodesmium erythraeum IMS101, yielding a chromosome of 4.63 Mb and a single plasmid of 237 kb. Increasing salinities to ≥43 ppt inhibited the growth of Trichodesmium but stimulated growth of the associated Alteromonas. We characterized the transcriptomic responses of both microorganisms and identified the complement of active transcriptional start sites in Alteromonas at single-nucleotide resolution. In replicate cultures, a similar set of genes became activated in Alteromonas when growth rates of Trichodesmium declined and mortality was high. The parallel activation of fliA, rpoS and of flagellar assembly and growth-related genes indicated that Alteromonas might have increased cell motility, growth, and multiple biosynthetic activities. Genes with the highest expression in the data set were three small RNAs (Aln1a-c) that were identified as analogs of the small RNAs CsrB-C in E. coli or RsmX-Z in pathogenic bacteria. Together with the carbon storage protein A (CsrA) homolog Te101_05290, these RNAs likely control the expression of numerous genes in responding to changes in the environment.


Subject(s)
Alteromonas/genetics , Transcriptome , Trichodesmium/growth & development , Alteromonas/growth & development , Alteromonas/metabolism , Bacterial Proteins/genetics , Microbial Interactions , RNA, Small Untranslated/metabolism , Salinity , Transcription Initiation Site , Trichodesmium/genetics
20.
Appl Microbiol Biotechnol ; 101(17): 6597-6606, 2017 Sep.
Article in English | MEDLINE | ID: mdl-28646448

ABSTRACT

Alteromonas infernus bacterium isolated from deep-sea hydrothermal vents can produce by fermentation a high molecular weight exopolysaccharide (EPS) called GY785. This EPS described as a new source of glycosaminoglycan-like molecule presents a great potential for pharmaceutical and biotechnological applications. However, this unusual EPS is secreted by a Gram-negative bacterium and can be therefore contaminated by endotoxins, in particular the lipopolysaccharides (LPS). Biochemical and chemical analyses of the LPS extracted from A. infernus membranes have shown the lack of the typical LPS architecture since 3-deoxy-D-manno-oct-2-ulopyranosonic acid (Kdo), glucosamine (GlcN), and phosphorylated monosaccharides were not present. Unlike for other Gram-negative bacteria, the results revealed that the outer membrane of A. infernus bacterium is most likely composed of peculiar glycolipids. Furthermore, the presence of these glycolipids was also detected in the EPS batches produced by fermentation. Different purification and chemical detoxification methods were evaluated to efficiently purify the EPS. Only the method based on a differential solubility of EPS and glycolipids in deoxycholate detergent showed the highest decrease in the endotoxin content. In contrast to the other tested methods, this new protocol can provide an effective method for obtaining endotoxin-free EPS without any important modification of its molecular weight, monosaccharide composition, and sulfate content.


Subject(s)
Alteromonas/metabolism , Endotoxins/metabolism , Polysaccharides, Bacterial/chemistry , Polysaccharides, Bacterial/isolation & purification , Alteromonas/drug effects , Detergents/pharmacology , Endotoxins/chemistry , Endotoxins/deficiency , Endotoxins/isolation & purification , Fermentation , Glycolipids/chemistry , Glycolipids/metabolism , Hydrothermal Vents/microbiology , Lipopolysaccharides/chemistry , Lipopolysaccharides/deficiency , Molecular Weight , Monosaccharides/pharmacology , Polysaccharides, Bacterial/biosynthesis , Polysaccharides, Bacterial/metabolism
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