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1.
Biochem J ; 478(13): 2697-2713, 2021 07 16.
Article in English | MEDLINE | ID: mdl-34133730

ABSTRACT

During malarial infection, Plasmodium parasites digest human hemoglobin to obtain free amino acids for protein production and maintenance of osmotic pressure. The Plasmodium M1 and M17 aminopeptidases are both postulated to have an essential role in the terminal stages of the hemoglobin digestion process and are validated drug targets for the design of new dual-target anti-malarial compounds. In this study, we profiled the substrate specificity fingerprints and kinetic behaviors of M1 and M17 aminopeptidases from Plasmodium falciparum and Plasmodium vivax, and the mouse model species, Plasmodium berghei. We found that although the Plasmodium M1 aminopeptidases share a largely similar, broad specificity at the P1 position, the P. falciparum M1 displays the greatest diversity in specificity and P. berghei M1 showing a preference for charged P1 residues. In contrast, the Plasmodium M17 aminopeptidases share a highly conserved preference for hydrophobic residues at the P1 position. The aminopeptidases also demonstrated intra-peptide sequence specificity, particularly the M1 aminopeptidases, which showed a definitive preference for peptides with fewer negatively charged intrapeptide residues. Overall, the P. vivax and P. berghei enzymes had a faster substrate turnover rate than the P. falciparum enzymes, which we postulate is due to subtle differences in structural dynamicity. Together, these results build a kinetic profile that allows us to better understand the catalytic nuances of the M1 and M17 aminopeptidases from different Plasmodium species.


Subject(s)
Aminopeptidases/metabolism , Peptides/metabolism , Plasmodium/enzymology , Protozoan Proteins/metabolism , Aminopeptidases/classification , Aminopeptidases/genetics , Animals , Biocatalysis/drug effects , Humans , Isoenzymes/genetics , Isoenzymes/metabolism , Kinetics , Leucine/analogs & derivatives , Leucine/pharmacology , Malaria/parasitology , Mice , Plasmodium/genetics , Plasmodium/physiology , Plasmodium berghei/enzymology , Plasmodium berghei/genetics , Plasmodium falciparum/enzymology , Plasmodium falciparum/genetics , Plasmodium vivax/enzymology , Plasmodium vivax/genetics , Protease Inhibitors/pharmacology , Protozoan Proteins/genetics , Recombinant Proteins/metabolism , Species Specificity , Substrate Specificity
2.
Int J Mol Sci ; 21(16)2020 Aug 05.
Article in English | MEDLINE | ID: mdl-32764495

ABSTRACT

Aminopeptidases (APs) are metalloenzymes that hydrolyze peptides and polypeptides by scission of the N-terminus amino acid and that also participate in the intracellular final digestion of proteins. APs play an important role in protein maturation, signal transduction, and cell-cycle control, among other processes. These enzymes are especially relevant in the control of cardiovascular and renal functions. APs participate in the regulation of the systemic and local renin-angiotensin system and also modulate the activity of neuropeptides, kinins, immunomodulatory peptides, and cytokines, even contributing to cholesterol uptake and angiogenesis. This review focuses on the role of four key APs, aspartyl-, alanyl-, glutamyl-, and leucyl-cystinyl-aminopeptidases, in the control of blood pressure (BP) and renal function and on their association with different cardiovascular and renal diseases. In this context, the effects of AP inhibitors are analyzed as therapeutic tools for BP control and renal diseases. Their role as urinary biomarkers of renal injury is also explored. The enzymatic activities of urinary APs, which act as hydrolyzing peptides on the luminal surface of the renal tubule, have emerged as early predictive renal injury biomarkers in both acute and chronic renal nephropathies, including those induced by nephrotoxic agents, obesity, hypertension, or diabetes. Hence, the analysis of urinary AP appears to be a promising diagnostic and prognostic approach to renal disease in both research and clinical settings.


Subject(s)
Aminopeptidases/genetics , Biomarkers/blood , Hypertension/genetics , Renal Insufficiency, Chronic/genetics , Aminopeptidases/blood , Aminopeptidases/classification , Blood Pressure/genetics , Cardiovascular System/metabolism , Cardiovascular System/pathology , Cystinyl Aminopeptidase/blood , Cystinyl Aminopeptidase/genetics , Glutamyl Aminopeptidase/blood , Glutamyl Aminopeptidase/genetics , Humans , Hypertension/blood , Hypertension/pathology , Kidney/metabolism , Kidney/pathology , Renal Insufficiency, Chronic/blood , Renal Insufficiency, Chronic/pathology , Renin-Angiotensin System/genetics
3.
Proteins ; 87(3): 212-225, 2019 03.
Article in English | MEDLINE | ID: mdl-30536999

ABSTRACT

M24B peptidases cleaving Xaa-Pro bond in dipeptides are prolidases whereas those cleaving this bond in longer peptides are aminopeptidases-P. Bacteria have small aminopeptidases-P (36-39 kDa), which are diverged from canonical aminopeptidase-P of Escherichia coli (50 kDa). Structure-function studies of small aminopeptidases-P are lacking. We report crystal structures of small aminopeptidases-P from E. coli and Deinococcus radiodurans, and report substrate-specificities of these proteins and their ortholog from Mycobacterium tuberculosis. These are aminopeptidases-P, structurally close to small prolidases except for absence of dipeptide-selectivity loop. We noticed absence of this loop and conserved arginine in canonical archaeal prolidase (Maher et al., Biochemistry. 43, 2004, 2771-2783) and questioned its classification. Our enzymatic assays show that this enzyme is an aminopeptidase-P. Further, our mutagenesis studies illuminate importance of DXRY sequence motif in bacterial small aminopeptidases-P and suggest common evolutionary origin with human XPNPEP1/XPNPEP2. Our analyses reveal sequence/structural features distinguishing small aminopeptidases-P from other M24B peptidases.


Subject(s)
Aminopeptidases/chemistry , Structure-Activity Relationship , Amino Acid Sequence/genetics , Aminopeptidases/classification , Aminopeptidases/genetics , Crystallography, X-Ray , Deinococcus/enzymology , Dipeptidases/chemistry , Dipeptides/chemistry , Escherichia coli/enzymology , Prokaryotic Cells/enzymology , Substrate Specificity
4.
J Biol Chem ; 289(21): 15035-43, 2014 May 23.
Article in English | MEDLINE | ID: mdl-24700462

ABSTRACT

Protein translation is initiated with methionine in eukaryotes, and the majority of proteins have their N-terminal methionine removed by methionine aminopeptidases (MetAP1 and MetAP2) prior to action. Methionine removal can be important for protein function, localization, or stability. No mechanism of regulation of MetAP activity has been identified. MetAP2, but not MetAP1, contains a single Cys(228)-Cys(448) disulfide bond that has an -RHStaple configuration and links two ß-loop structures, which are hallmarks of allosteric disulfide bonds. From analysis of crystal structures and using mass spectrometry and activity assays, we found that the disulfide bond exists in oxidized and reduced states in the recombinant enzyme. The disulfide has a standard redox potential of -261 mV and is efficiently reduced by the protein reductant, thioredoxin, with a rate constant of 16,180 m(-1) s(-1). The MetAP2 disulfide bond also exists in oxidized and reduced states in glioblastoma tumor cells, and stressing the cells by oxygen or glucose deprivation results in more oxidized enzyme. The Cys(228)-Cys(448) disulfide is at the rim of the active site and is only three residues distant from the catalytic His(231), which suggested that cleavage of the bond would influence substrate hydrolysis. Indeed, oxidized and reduced isoforms have different catalytic efficiencies for hydrolysis of MetAP2 peptide substrates. These findings indicate that MetAP2 is post-translationally regulated by an allosteric disulfide bond, which controls substrate specificity and catalytic efficiency.


Subject(s)
Aminopeptidases/metabolism , Metalloendopeptidases/metabolism , Protein Structure, Tertiary , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism , Aminopeptidases/classification , Aminopeptidases/genetics , Animals , Biocatalysis , Cell Line , Cell Line, Tumor , Crystallization , Disulfides/chemistry , Disulfides/metabolism , Electrophoresis, Polyacrylamide Gel , Glioblastoma/enzymology , Glioblastoma/pathology , Humans , Hydrolysis , Kinetics , Metalloendopeptidases/classification , Metalloendopeptidases/genetics , Models, Molecular , Oxidation-Reduction , Peptides/metabolism , Phylogeny , Substrate Specificity , Tandem Mass Spectrometry , Thioredoxins/metabolism
5.
PLoS One ; 8(3): e58681, 2013.
Article in English | MEDLINE | ID: mdl-23536812

ABSTRACT

BACKGROUND: The N-terminal protein processing mechanism (NPM) including N-terminal Met excision (NME) and N-terminal acetylation (N(α)-acetylation) represents a common protein co-translational process of some eukaryotes. However, this NPM occurred in woody plants yet remains unknown. METHODOLOGY/PRINCIPAL FINDINGS: To reveal the NPM in poplar, we investigated the N(α)-acetylation status of poplar proteins during dormancy by combining tandem mass spectrometry with TiO2 enrichment of acetylated peptides. We identified 58 N-terminally acetylated (N(α)-acetylated) proteins. Most proteins (47, >81%) are subjected to N(α)-acetylation following the N-terminal removal of Met, indicating that N(α)-acetylation and NME represent a common NPM of poplar proteins. Furthermore, we confirm that poplar shares the analogous NME and N(α)-acetylation (NPM) to other eukaryotes according to analysis of N-terminal features of these acetylated proteins combined with genome-wide identification of the involving methionine aminopeptidases (MAPs) and N-terminal acetyltransferase (Nat) enzymes in poplar. The N(α)-acetylated reactions and the involving enzymes of these poplar proteins are also identified based on those of yeast and human, as well as the subcellular location information of these poplar proteins. CONCLUSIONS/SIGNIFICANCE: This study represents the first extensive investigation of N(α)-acetylation events in woody plants, the results of which will provide useful resources for future unraveling the regulatory mechanisms of N(α)-acetylation of proteins in poplar.


Subject(s)
Plant Proteins/metabolism , Populus/metabolism , Protein Processing, Post-Translational , Acetylation , Amidohydrolases/metabolism , Amino Acid Sequence , Aminopeptidases/classification , Aminopeptidases/genetics , Aminopeptidases/metabolism , Arabidopsis/genetics , Arabidopsis/metabolism , Genome, Plant , Molecular Sequence Data , N-Terminal Acetyltransferases/metabolism , Phylogeny , Populus/enzymology , Populus/genetics , Position-Specific Scoring Matrices , Sequence Alignment
6.
Med Microbiol Immunol ; 201(4): 463-73, 2012 Nov.
Article in English | MEDLINE | ID: mdl-22976555

ABSTRACT

Activation of CD8(+) cytotoxic T cells is crucial for the adaptive immune response against viral infections and the control of malignant transformed cells. Together with activation of costimulatory molecules like CD3 and CD28, CD8(+) T cells need activation of their unique T cell receptor via recognition of foreign peptide epitopes in combination with major histocompatibility complexes class I on the cell surface of professional antigen-presenting cells. Presentation of pathogen-associated proteins is the result of a complex proteolytic process. It starts with the breakdown of proteins by a cytosolic endopeptidase, the proteasome, and is continued by subsequent N-terminal trimming events in the cytosol and/or the endoplasmic reticulum. Analysis of the proteolytic aminopeptidase activity in the former cellular compartment showed that the cytosol harbors a multitude of aminopeptidases that have singular specificities, but on the other hand also show redundancy in the trimming of N-terminal residues. The observed pattern of the overall trimming in the cytosol is reflected by the activity of the four identified aminopeptidases, and the administration of protease inhibitors made it possible to assign specificity of cleaving of proteinogenic amino acids to one or more identified aminopeptidase. The only exception was the cleavage of aspartic acid, which is performed by one yet unidentified enzyme.


Subject(s)
Aminopeptidases/classification , Aminopeptidases/metabolism , Cytosol/enzymology , Aminopeptidases/antagonists & inhibitors , Animals , Humans , Protease Inhibitors/metabolism
7.
Parasitol Int ; 61(4): 707-10, 2012 Dec.
Article in English | MEDLINE | ID: mdl-22609952

ABSTRACT

We identified two methionine aminopeptidases of Cryptosporidium parvum (CpMetAP1 and CpMetAP2) and characterized the biochemical properties of the recombinant enzymes. CpMetAP1 and CpMetAP2 belong to the type I and type II MetAP subfamilies, respectively. Both CpMetAPs have typical amino acid residues essential for metal binding and substrate binding sites, which are conserved in the MetAP family. Bacterially expressed recombinant CpMetAP1 and CpMetAP2 showed similar biochemical properties including a broad optimal pH range (pH 7.5-8.5) with maximum activity at pH 8.0. The two enzymes were stable under neutral and alkaline pHs but were relatively unstable under acidic conditions. The activities of CpMetAP1 and CpMetAP2 increased highly in the presence of Mn(2+) and Co(2+). CpMetAP1 and CpMetAP2 were effectively inhibited by the metal chelators, EDTA and 1,10-phenanthroline, and were partially inhibited by the aminopeptidase inhibitors, amastatin and bestatin. Fumagillin also showed an inhibitory effect on both CpMetAPs.


Subject(s)
Aminopeptidases/metabolism , Cryptosporidium parvum/enzymology , Gene Expression Regulation, Enzymologic/physiology , Aminopeptidases/classification , Aminopeptidases/genetics , Animals , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Time Factors
8.
Biochem Biophys Res Commun ; 419(1): 104-9, 2012 Mar 02.
Article in English | MEDLINE | ID: mdl-22330801

ABSTRACT

A triticale cDNA encoding a prolyl aminopeptidase (PAP) was obtained by RT-PCR and has been designated as TsPAP1. The cloned cDNA is 1387 bp long and encodes a protein of 390 amino acids with a calculated molecular mass of 43.9 kDa. The deduced TsPAP1 protein exhibits a considerable sequence identity with the biochemically characterized bacterial and fungal PAP proteins of small molecular masses (∼35 kDa). Moreover, the presence of conserved regions that are characteristic for bacterial monomeric PAP enzymes (the GGSWG motif, the localization of the catalytic triad residues and the segment involved in substrate binding) has also been noted. Primary structure analysis and phylogenetic analysis revealed that TsPAP1 encodes a novel plant PAP protein that is distinct from the multimeric proteins that have thus far been characterized in plants and whose counterparts have been recognized only in bacteria and fungi. A significant increase in the TsPAP1 transcript level in the shoots of triticale plants was observed under drought and saline conditions as well as in the presence of cadmium and aluminium ions in the nutrient medium. This paper is the first report describing changes in the transcript levels of any plant PAP in response to suboptimal growth conditions.


Subject(s)
Aminopeptidases/biosynthesis , Edible Grain/enzymology , Plant Proteins/biosynthesis , Amino Acid Sequence , Aminopeptidases/classification , Aminopeptidases/genetics , Edible Grain/genetics , Edible Grain/growth & development , Gene Expression Regulation, Enzymologic , Gene Expression Regulation, Plant , Molecular Sequence Data , Phylogeny , Plant Proteins/classification , Plant Proteins/genetics , Stress, Physiological/genetics
9.
Biochimie ; 92(11): 1509-29, 2010 Nov.
Article in English | MEDLINE | ID: mdl-20457213

ABSTRACT

Aminopeptidases are enzymes that selectively hydrolyze an amino acid residue from the N-terminus of proteins and peptides. They are important for the proper functioning of prokaryotic and eukaryotic cells, but very often are central players in the devastating human diseases like cancer, malaria and diabetes. The largest aminopeptidase group include enzymes containing metal ion(s) in their active centers, which often determines the type of inhibitors that are the most suitable for them. Effective ligands mostly bind in a non-covalent mode by forming complexes with the metal ion(s). Here, we present several approaches for the design of inhibitors for metallo-aminopeptidases. The optimized structures should be considered as potential leads in the drug discovery process against endogenous and infectious diseases.


Subject(s)
Aminopeptidases/antagonists & inhibitors , Protease Inhibitors/pharmacology , Aminopeptidases/chemistry , Aminopeptidases/classification , Aminopeptidases/metabolism , Animals , Biocatalysis , Humans , Protease Inhibitors/chemistry
10.
Biochemistry ; 47(19): 5303-11, 2008 May 13.
Article in English | MEDLINE | ID: mdl-18416562

ABSTRACT

Aminopeptidase N from Escherichia coli is a M1 class aminopeptidase with the active-site region related to that of thermolysin. The enzyme has unusual specificity, cleaving adjacent to the large, nonpolar amino acids Phe and Tyr but also cleaving next to the polar residues Lys and Arg. To try to understand the structural basis for this pattern of hydrolysis, the structure of the enzyme was determined in complex with the amino acids L-arginine, L-lysine, L-phenylalanine, L-tryptophan, and L-tyrosine. These amino acids all bind with their backbone atoms close to the active-site zinc ion and their side chain occupying the S1 subsite. This subsite is in the form of a cylinder, about 10 A in cross-section and 12 A in length. The bottom of the cylinder includes the zinc ion and a number of polar side chains that make multiple hydrogen-bonding and other interactions with the alpha-amino group and the alpha-carboxylate of the bound amino acid. The walls of the S1 cylinder are hydrophobic and accommodate the nonpolar or largely nonpolar side chains of Phe and Tyr. The top of the cylinder is polar in character and includes bound water molecules. The epsilon-amino group of the bound lysine side chain and the guanidinium group of arginine both make multiple hydrogen bonds to this part of the S1 site. At the same time, the hydrocarbon part of the lysine and arginine side chains is accommodated within the nonpolar walls of the S1 cylinder. This combination of hydrophobic and hydrophilic binding surfaces explains the ability of ePepN to cleave Lys, Arg, Phe, and Tyr. Another favored substrate has Ala at the P1 position. The short, nonpolar side chain of this residue can clearly be bound within the hydrophobic part of the S1 cylinder, but the reason for its facile hydrolysis remains uncertain.


Subject(s)
Aminopeptidases/chemistry , Aminopeptidases/metabolism , Bacterial Proteins/chemistry , Bacterial Proteins/metabolism , Escherichia coli/enzymology , Aminopeptidases/classification , Aminopeptidases/genetics , Animals , Arginine/metabolism , Bacterial Proteins/classification , Bacterial Proteins/genetics , Binding Sites , Crystallography, X-Ray , Escherichia coli/genetics , Humans , Hydrophobic and Hydrophilic Interactions , Lysine/metabolism , Models, Molecular , Protein Binding , Protein Structure, Quaternary , Protein Structure, Tertiary , Sodium/chemistry , Sodium/metabolism , Structural Homology, Protein , Substrate Specificity
11.
Biochemistry ; 44(36): 12049-56, 2005 Sep 13.
Article in English | MEDLINE | ID: mdl-16142902

ABSTRACT

Two residues that are conserved in type-I methionyl aminopeptidases (MetAPs) but are absent in all type-II MetAPs are the cysteine residues (Escherichia coli MetAP-I: C59 and C70) that reside at the back of the substrate recognition pocket. These Cys residues are 4.4 A apart and do not form a disulfide bond. Since bacteria and fungi contain only type-I MetAPs while all human cells contain both type-I and type-II MetAPs, type-I MetAPs represent a novel antibiotic/antifungal target if type-I MetAPs can be specifically targeted over type-II. Based on reaction of the thiol-specific binding reagent 5,5'-dithio-bis(2-nitrobenzoic acid) (DTNB) with the type-I MetAP from E. coli and the type-II MetAP from Pyrococcus furiosus, the type-I MetAP can be selectively inhibited. Verification that DTNB covalently binds to C59 in EcMetAP-I was obtained by mass spectrometry (MS) from reaction of DTNB with the C59A and C70A mutant EcMetAP-I enzymes. In addition, two inhibitors of EcMetAP-I, 5-iodopentaphosphonic acid (1) and 6-phosphonohexanoic acid (2), were designed and synthesized. The first was designed as a selective-C59 binding reagent while the second was designed as a simple competitive inhibitor of EcMetAP. Indeed, inhibitor 1 forms a covalent interaction with C59 based on activity assays and MS measurements, while 2 does not. These data indicate that type-I MetAPs can be selectively targeted over type-II MetAPs, suggesting that type-I MetAPs represent a new enzymatic target for antibacterial or antifungal agents.


Subject(s)
Aminopeptidases/classification , Aminopeptidases/metabolism , Amino Acid Sequence , Aminopeptidases/chemistry , Aminopeptidases/genetics , Anti-Infective Agents/pharmacology , Cysteine/genetics , Cysteine/metabolism , Escherichia coli/enzymology , Humans , Kinetics , Methionyl Aminopeptidases , Molecular Sequence Data , Mutation/genetics , Pyrococcus furiosus/enzymology , Sequence Alignment , Sequence Homology, Amino Acid , Species Specificity , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
12.
J Cell Biochem ; 95(6): 1191-203, 2005 Aug 15.
Article in English | MEDLINE | ID: mdl-15962312

ABSTRACT

The dependence of cell growth on methionine aminopeptidase (MetAP) function in bacteria and yeast is firmly established. Here we report experimental evidence that the control of cell proliferation in mammalian cells is directly linked and strictly dependent on the activity of both MetAP-1 and MetAP-2. The targeted downregulation of either methionine aminopeptidase MetAP-1 or MetAP-2 protein expression by small interfering RNA (siRNA) significantly inhibited the proliferation of human umbilical vein endothelial cells (HUVEC) (70%-80%), while A549 human lung carcinoma cell proliferation was less inhibited (20%-30%). The cellular levels of MetAP-2 enzyme were measured after MetAP-2 siRNA treatment and found to decrease over time from 4 to 96 h, while rapid and complete depletion of MetAP-2 enzyme activity was observed after 4 h treatment with two pharmacological inhibitors of MetAP-2, PPI-2458 and fumagillin. When HUVEC and A549 cells were treated simultaneously with MetAP-2 siRNA and PPI-2458, or fumagillin, which irreversibly inhibit MetAP-2 enzyme activity, no additive effect on maximum growth inhibition was observed. This strongly suggests that MetAP-2 is the single critical cellular enzyme affected by either MetAP-2 targeting approach. Most strikingly, despite their significantly different sensitivity to growth inhibition after targeting of either MetAP-1 or MetAP-2, HUVEC, and A549 cells, which were made functionally deficient in both MetAP-1 and MetAP-2 were completely or almost completely inhibited in their growth, respectively. This closely resembled the observed growth inhibition in genetically double-deficient map1map2 yeast strains. These results suggest that MetAP-1 and MetAP-2 have essential functions in the control of mammalian cell proliferation and that MetAP-dependent growth control is evolutionarily highly conserved.


Subject(s)
Aminopeptidases/classification , Aminopeptidases/metabolism , Aminopeptidases/antagonists & inhibitors , Aminopeptidases/genetics , Cell Proliferation/drug effects , Cells, Cultured , Cyclohexanes , Down-Regulation , Epithelial Cells/cytology , Epithelial Cells/drug effects , Epithelial Cells/enzymology , Epoxy Compounds/pharmacology , Fatty Acids, Unsaturated/pharmacology , Humans , Methionyl Aminopeptidases , RNA, Small Interfering/genetics , RNA, Small Interfering/metabolism , Saccharomyces cerevisiae/cytology , Saccharomyces cerevisiae/drug effects , Saccharomyces cerevisiae/enzymology , Sesquiterpenes , Transcription, Genetic/drug effects , Transcription, Genetic/genetics , Umbilical Veins/cytology , Valine/analogs & derivatives , Valine/pharmacology
13.
Neurosci Lett ; 383(1-2): 136-40, 2005.
Article in English | MEDLINE | ID: mdl-15936526

ABSTRACT

We evaluated the subcellular distribution of four membrane-bound aminopeptidases in the human and rat brain cortex. The particulate enzymes under study--puromycin-sensitive aminopeptidase (PSA), aminopeptidase N (APN), pyroglutamyl-peptidase I (PG I) and aspartyl-aminopeptidase (Asp-AP)--were fluorometrically measured using beta-naphthylamide derivatives. Membrane-bound aminopeptidase activity was found in all the studied subcellular fractions (myelinic, synaptosomal, mitochondrial, microsomal and nuclear fractions), although not homogenously. Human PSA showed highest activity in the microsomal fraction. APN was significantly higher in the nuclear fraction of both species, while PG I showed highest activity in the synaptosomal and myelinic fractions of the human and rat brain. The present results suggest that in addition to inactivating neuropeptides at the synaptic cleft, these enzymes may participate in other physiological processes. Moreover, these peptidases may play specific roles depending on their activity levels at the different subcellular structures where they are localized.


Subject(s)
Aminopeptidases/metabolism , Cell Membrane/enzymology , Cerebral Cortex/cytology , Cerebral Cortex/enzymology , Aminopeptidases/classification , Analysis of Variance , Animals , CD13 Antigens/metabolism , Glutamyl Aminopeptidase/metabolism , Humans , Postmortem Changes , Pyroglutamyl-Peptidase I/metabolism , Rats , Rats, Sprague-Dawley , Subcellular Fractions/enzymology
14.
Biochemistry ; 44(19): 7166-74, 2005 May 17.
Article in English | MEDLINE | ID: mdl-15882055

ABSTRACT

The crystal structure of the methionine aminopeptidase (MetAP) from Mycobacterium tuberculosis (MtMetAP1c) has been determined in the apo- and methionine-bound forms. This is the first structure of a type I MetAP with a significant extension at the amino terminus. The catalytic domain is similar to that of Escherichia coli MetAP (EcMetAP), and the additional 40-residue segment wraps around the surface with an extended but well-defined structure. There are several members of the actinomyces family of bacteria that contain MetAPs with such N-terminal extensions, and we classify these as MetAP type Ic (MetAP1c). Some members of this family of bacteria also contain a second MetAP (type Ia) similar in size to EcMetAP. The main difference between the apo- and the methionine-bound forms of MtMetAP1c is in the conformation of the metal-binding residues. The position of the methionine bound in the active site is very similar to that found in many of the known members of this family. Side chains of several residues in the S1 and S1' subsites shift as much as 1.5 A compared to EcMetAP. Residues 14-17 have the sequence Pro-Thr-Arg-Pro and adopt the conformation of a polyproline II helix. Model-building suggests that this PxxP segment can bind to an SH3 protein motif. Other type Ib and type Ic MetAPs with N-terminal extensions contain similarly located PxxP motifs. Also, several ribosomal proteins are known to include SH3 domains, one of which is located close to the tunnel from which the nascent polypeptide chain exits the ribosome. Therefore, it is proposed that the binding of MetAPs to the ribosome is mediated by a complex between a PxxP motif on the protein and an SH3 domain on the ribosome. It is also possible that zinc-finger domains, which are located at the extreme N-terminus of type I MetAPs, may participate in interactions with the ribosome.


Subject(s)
Aminopeptidases/chemistry , Mycobacterium tuberculosis/enzymology , Ribosomal Proteins/chemistry , src Homology Domains , Amino Acid Motifs , Amino Acid Sequence , Aminopeptidases/classification , Aminopeptidases/metabolism , Apoenzymes/chemistry , Binding Sites , Crystallography, X-Ray , Membrane Proteins/chemistry , Membrane Proteins/metabolism , Methionyl Aminopeptidases , Molecular Sequence Data , Peptide Fragments/chemistry , Peptide Fragments/metabolism , Peptides/chemistry , Protein Binding , Ribosomal Proteins/metabolism , Ribosomes/chemistry , Ribosomes/metabolism , Sequence Homology, Amino Acid
15.
J Biol Chem ; 280(14): 14310-7, 2005 Apr 08.
Article in English | MEDLINE | ID: mdl-15687497

ABSTRACT

We have cloned and characterized a human brain cDNA encoding a new metalloprotease that has been called aminopeptidase O (AP-O). AP-O exhibits a series of structural features characteristic of aminopeptidases, including a conserved catalytic domain with a zinc-binding site (HEXXHX18E) that allows its classification in the M1 family of metallopeptidases or gluzincins. The structural complexity of AP-O is further increased by the presence of an additional C-terminal domain 170 residues long, which is predicted to have an ARM repeat fold originally identified in the Drosophila segment polarity gene product Armadillo. This ARM repeat domain is also present in aminopeptidase B, aminopeptidase B-like, and leukotriene A4 hydrolase and defines a novel subfamily of aminopeptidases that we have called ARM aminopeptidases. Northern blot analysis revealed that AP-O is mainly expressed in the pancreas, placenta, liver, testis, and heart. Human AP-O was produced in Escherichia coli, and the purified recombinant protein hydrolyzed synthetic substrates used for assaying aminopeptidase activity. This activity was abolished by general inhibitors of metalloproteases and specific inhibitors of aminopeptidases. Recombinant AP-O also cleaved angiotensin III to generate angiotensin IV, a bioactive peptide of the renin-angiotensin pathway with multiple actions on diverse tissues, including brain, testis, and heart. On the basis of these results we suggest that AP-O could play a role in the proteolytic processing of bioactive peptides in those tissues where it is expressed.


Subject(s)
Aminopeptidases/chemistry , Aminopeptidases/metabolism , Epoxide Hydrolases/chemistry , Protein Conformation , Amino Acid Sequence , Aminopeptidases/classification , Aminopeptidases/genetics , Angiotensin III/metabolism , Animals , Armadillo Domain Proteins , Base Sequence , Brain/enzymology , Epoxide Hydrolases/genetics , Epoxide Hydrolases/metabolism , Humans , Molecular Sequence Data , Protein Structure, Tertiary , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/isolation & purification , Recombinant Proteins/metabolism , Sequence Alignment , Tissue Distribution , Trans-Activators/chemistry , Trans-Activators/genetics
16.
Neuroendocrinology ; 80(4): 219-24, 2004.
Article in English | MEDLINE | ID: mdl-15604601

ABSTRACT

Asymmetries in the neuroendocrine system extend from central structures to paired endocrine glands and their innervation. In addition to the well-known asymmetry in the function of brain dopamine, there are also asymmetries in the peripheral response to experimental hemi-parkinsonism, performed by means of lesions of the nigrostriatal system with 6-hydroxydopamine (6-OHDA) injections into the left or right hemisphere. Therefore, it is speculated that the neuroendocrine system would also be asymmetrically affected in experimental hemi-parkinsonism. Aminopeptidases (AP) play a major role in the control of peptide concentration at both central and peripheral levels in tissues and blood, thus reflecting the functional status of their endogenous substrates. Therefore, to evaluate the peripheral response of hemi-parkinsonism, we have performed a comprehensive study of plasma AP activities after lesions of the nigrostriatal system with 6-OHDA administered into either left or right striatum of adult male rats. Saline was injected into control groups. AlaAP, CysAP, AspAP and GluAP activities were determined in plasma, using specific arylamides as substrates. Plasma AlaAP activity increased 3-fold (p < 0.001) whereas AspAP activity decreased by 30% (p < 0.05) after lesion of the right hemisphere. In contrast, CysAP and GluAP activities increased significantly after lesion of the left hemisphere by 200 and 50%, respectively (p < 0.05). The main discovery of the present results demonstrates that experimental hemi-parkinsonism affects differentially the plasma AP activities depending on the hemisphere in which the lesion is performed. This suggests that the circulating hormones, susceptible to be hydrolyzed by these enzymatic activities, are also modified.


Subject(s)
Aminopeptidases/blood , Corpus Striatum/drug effects , Functional Laterality/drug effects , Oxidopamine/administration & dosage , Sympatholytics/administration & dosage , Aminopeptidases/classification , Analysis of Variance , Animals , Corpus Striatum/enzymology , Male , Rats , Rats, Wistar
17.
Protein Pept Lett ; 11(5): 491-500, 2004 Oct.
Article in English | MEDLINE | ID: mdl-15544570

ABSTRACT

In mammals the M1 aminopeptidase family consists of nine different proteins, five of which are integral membrane proteins. The aminopeptidases are defined by two motifs in the catalytic domain; a zinc binding motif HEXXH-(X18)-E and an exopeptidase motif GXMEN. Aminopeptidases of this family are able to cleave a broad range of peptides down to only to a single peptide. This ability to either generate or degrade active peptide hormones is the focus of this review. In addition to their capacity to degrade a range of peptides a number of these aminopeptidases have novel functions that impact on cell signalling and will be discussed.


Subject(s)
Aminopeptidases/metabolism , Membrane Proteins/metabolism , Pyrrolidonecarboxylic Acid/analogs & derivatives , Aminopeptidases/chemistry , Aminopeptidases/classification , Aminopeptidases/genetics , Animals , CD13 Antigens/chemistry , CD13 Antigens/metabolism , Cystinyl Aminopeptidase , Humans , Membrane Proteins/chemistry , Membrane Proteins/classification , Membrane Proteins/genetics , Minor Histocompatibility Antigens , Pyrrolidonecarboxylic Acid/chemistry , Pyrrolidonecarboxylic Acid/metabolism
18.
Biochem Biophys Res Commun ; 317(2): 531-8, 2004 Apr 30.
Article in English | MEDLINE | ID: mdl-15063790

ABSTRACT

An aminopeptidase secreted from Streptomyces septatus TH-2 (SSAP) was identified as a heat stable enzyme, and the Ssap gene was cloned and sequenced. The primary structure of SSAP showed 71% identity with that of a Streptomyces griseus aminopeptidase (SGAP), however, it lacked a unique calcium binding site. The recombinant SSAP was overexpressed in the culture supernatant of Escherichia coli harboring pET-KmS2. A comparison of recombinant SSAP and SGAP showed that both enzymes are different in terms of modulation by calcium and substrate specificity. The activity of SSAP was not modulated by calcium, while SGAP is a calcium-activated enzyme. SSAP catalyzed the hydrolysis of L-Lys-pNA efficiently whereas the reaction rate for L-Lys-pNA hydrolysis of SGAP was significantly low. Furthermore, in SGAP, the presence of Ca2+ decreased the reaction rate of L-Lys-pNA hydrolysis. SSAP also had different pKas s of reaction from that of SGAP, although almost all the residues which compose the active site were conserved in both enzymes. This result indicates that SSAP has a different environment of substrate binding and active sites from those of SGAP.


Subject(s)
Aminopeptidases/biosynthesis , Aminopeptidases/chemistry , Calcium/chemistry , Calcium/metabolism , Cloning, Molecular , Streptomyces griseus/enzymology , Streptomyces/enzymology , Amino Acid Sequence , Aminopeptidases/classification , Aminopeptidases/genetics , Enzyme Activation , Enzyme Stability , Hydrogen-Ion Concentration , Molecular Sequence Data , Recombinant Proteins/biosynthesis , Recombinant Proteins/chemistry , Sequence Homology, Amino Acid , Streptomyces/genetics , Streptomyces griseus/genetics , Temperature
19.
J Mol Biol ; 330(2): 309-21, 2003 Jul 04.
Article in English | MEDLINE | ID: mdl-12823970

ABSTRACT

Peptide deformylase (PDF) has received considerable attention during the last few years as a potential target for a new type of antibiotics. It is an essential enzyme in eubacteria for the removal of the formyl group from the N terminus of the nascent polypeptide chain. We have solved the X-ray structures of four members of this enzyme family, two from the Gram-positive pathogens Streptococcus pneumoniae and Staphylococcus aureus, and two from the Gram-negative bacteria Thermotoga maritima and Pseudomonas aeruginosa. Combined with the known structures from the Escherichia coli enzyme and the recently solved structure of the eukaryotic deformylase from Plasmodium falciparum, a complete picture of the peptide deformylase structure and function relationship is emerging. This understanding could help guide a more rational design of inhibitors. A structure-based comparison between PDFs reveals some conserved differences between type I and type II enzymes. Moreover, our structures provide insights into the known instability of PDF caused by oxidation of the metal-ligating cysteine residue.


Subject(s)
Amidohydrolases , Aminopeptidases/chemistry , Pseudomonas aeruginosa/enzymology , Staphylococcus aureus/enzymology , Streptococcus pneumoniae/enzymology , Thermotoga maritima/enzymology , Amino Acid Sequence , Aminopeptidases/classification , Aminopeptidases/genetics , Binding Sites , Crystallography, X-Ray , Mass Spectrometry , Models, Molecular , Molecular Sequence Data , Molecular Structure , Oxidation-Reduction , Protein Structure, Secondary , Protein Structure, Tertiary , Pseudomonas aeruginosa/genetics , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Sequence Homology, Amino Acid , Staphylococcus aureus/genetics , Static Electricity , Streptococcus pneumoniae/genetics , Thermotoga maritima/genetics
20.
Biochem J ; 370(Pt 3): 971-8, 2003 Mar 15.
Article in English | MEDLINE | ID: mdl-12441000

ABSTRACT

Several investigators have independently identified membrane-associated aminopeptidases in the midgut of insect larvae as the initial interacting ligand to the insecticidal crystal proteins of Bacillus thuringiensis. Though several isoenzymes of aminopeptidases have been identified from the midgut of an insect and their corresponding cDNA cloned, only one of the isoform has been expressed heterologously and studied for its binding to Cry toxins. Here we report the cloning and expression of two aminopeptidases N from Helicoverpa armigera (American cotton bollworm) (HaAPNs). The full-length cDNA of H. armigera APN1 (haapn1) is 3205 bp in size and encodes a 1000-amino-acid protein, while H. armigera APN2 (haapn2) is 3116 bp in size and corresponds to a 1012-amino-acid protein. Structurally these proteins show sequence similarity to other insect aminopeptidases and possess characteristic aminopeptidase motifs. Both the genes have been expressed in Trichoplusia ni (cabbage looper) cells using a baculovirus expression vector. The expressed aminopeptidases are membrane-associated, catalytically active and glycosylated. Ligand-blot analysis of both these aminopeptidases with bioactive Cry1Aa, Cry1Ab and Cry1Ac proteins displayed differential interaction. All the three toxins bound to HaAPN1, whereas only Cry1Ac interacted with HaAPN2. This is the first report demonstrating differential Cry-toxin-binding abilities of two different aminopeptidases from a susceptible insect.


Subject(s)
Aminopeptidases/metabolism , Bacterial Proteins/metabolism , Bacterial Toxins , Endotoxins/metabolism , Isoenzymes/metabolism , Lepidoptera/enzymology , Amino Acid Sequence , Aminopeptidases/chemistry , Aminopeptidases/classification , Aminopeptidases/genetics , Animals , Bacillus thuringiensis Toxins , Bacterial Proteins/genetics , Cloning, Molecular , Digestive System/enzymology , Endotoxins/genetics , Glycosylation , Hemolysin Proteins , Isoenzymes/chemistry , Isoenzymes/classification , Isoenzymes/genetics , Lepidoptera/anatomy & histology , Lepidoptera/genetics , Ligands , Molecular Sequence Data , Phylogeny , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/metabolism
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