First multigene analysis of Archamoebae (Amoebozoa: Conosa) robustly reveals its phylogeny and shows that Entamoebidae represents a deep lineage of the group.

Archamoebae is an understudied group of anaerobic free-living or endobiotic protists that constitutes the major anaerobic lineage of the supergroup Amoebozoa. Hitherto, the phylogeny of Archamoebae was based solely on SSU rRNA and actin genes, which did not resolve relationships among the main lineages of the group. Because of this uncertainty, several different scenarios had been proposed for the phylogeny of the Archamoebae. In this study, we present the first multigene phylogenetic analysis that includes members of Pelomyxidae, and Rhizomastixidae. The analysis clearly shows that Mastigamoebidae, Pelomyxidae and Rhizomastixidae form a clade of mostly free-living, amoeboid flagellates, here called Pelobiontida. The predominantly endobiotic and aflagellated Entamoebidae represents a separate, deep-branching lineage, Entamoebida. Therefore, two unique evolutionary events, horizontal transfer of the nitrogen fixation system from bacteria and transfer of the sulfate activation pathway to mitochondrial derivatives, predate the radiation of recent lineages of Archamoebae. The endobiotic lifestyle has arisen at least three times independently during the evolution of the group. We also present new ultrastructural data that clarifies the primary divergence among the family Mastigamoebidae which had previously been inferred from phylogenetic analyses based on SSU rDNA.

[Light- and electron-microscopic study of pelobiont Pelomyxa secunda (Gruber, 1884) comb. nov. (Archamoebae, Pelobiontida)].

Morphology of a pelobiont Pelomyxa secunda (Gruber, 1884) comb. nov. was investigated at light- and electron-microscopical levels. Locomotive forms are elongated or cigar-shaped. The size of active forms varies from 200 to 300 µm. Larger individuals (up to 400 µm) are not able to directed movement. Organism can produce short, usually finger-shaped hyaline pseudopodia at the frontal side or laterally. The cell coat is represented by amorphous glycocalix, up to 300 nm in thickness. A thin periphery cytoplasmic zone is deprived of any organelles, vacuoles, endocytobionts and other inclusions and separated from main cytoplasm by a layer of arranged microfilaments. P. secunda is multinucleate organism; nuclei are of granular type. The nucleolar material is represented by two forms of discrete structures differing in size and electron density. Two or three layers of short microtubules organized in the parallel arrangement are associated with outer side of the nuclear envelop. P. secunda possess two types of obligate prokaryotic endocytobionts lying in individual symbiontophoric vacuoles. Undulipodia, kinetosomes and root microtubular derivatives are not observed in P. secunda cells as well as any developed cytoplasmic microtubular cytoskeleton.

Morphological and molecular evidence support a close relationship between the free-living archamoebae Mastigella and Pelomyxa.

Members of the archamoebae comprise free-living and endobiotic amoeboid flagellates and amoebae that live in anoxic/microoxic habitats. Recently, the group has been divided into four separate families, Mastigamoebidae, Entamoebidae, Pelomyxidae, and Rhizomastixidae, whose interrelationships have not been completely resolved. There still are several key members of the archamoebae, notably the genus Mastigella, from which sequence data are missing. We established 12 strains of 5 species of Mastigella and Pelomyxa in culture, examined their morphology and determined their actin gene sequences. In addition, we examined the ultrastructure of three strains and determined and analyzed SSU rDNA sequences of two strains. Our data strongly suggest that Mastigella is specifically related to Pelomyxa, and it is transferred into the family Pelomyxidae. Surprisingly, Mastigella is likely paraphyletic with Pelomyxa forming its internal branch. The two genera share several morphological features that point to their common evolutionary history. Three new species of Mastigella are described: M. erinacea sp. nov., M. rubiformis sp. nov. and M. ineffigiata sp. nov.

[Reisolation and redescription of pelobiont Pelomyxa paradoxa Penard, 1902 (Archamoebae, Pelobiontida)].

Morphology of a pelobiont Pelomyxa paradoxa Penard, 1902 was investigated at light- and electron-microscopical levels. Locomoting cells are cigar-shaped. The cells produce many hyaline pseudopodia of digital and conical form at lateral sides of the body. The organism has a pronounced hyaline bulbous uroid with broad peripheral zone of hyaloplasm and many conical hyaline villi. There is a thin layer of amorphous glycocalix at the cell surface. "Structure" and food vacuoles of different size are very abundant in the endoplasm. Two different species of prokaryote endocytobionts are peculiar for P. paradoxa. Uninucleate stage dominates in the life cycle of P. paradoxa. Usually there are no more than 10-12 nuclei in multinucleate forms of P. paradoxa. Pelomyxae nuclei are closely surrounded by thick multilaminar layer and additionally by one more layer, which is formed by small vesicles with electron-dense content. Several irregular-shaped nucleoli are situated at the nucleus periphery. Inside the nucleoli, and sometimes directly in nucleoplasm the small round bodies are revealed, these bodies being formed by tightly packed electron-dense fibrils. Many non-motile flagellae are located mainly in the uroidal zone of the cell. Pronounced lateral root and 50-60 radial microtubules originate from the electrone-dense muft around the kinetosome. All elements of the rootlet system of flagella are limited by peripheral layers of cytoplasm. P. paradoxa occupy an intermediate position between two groups of species of Pelomyxa genus--P. gruberi + P. prima and P. palustris + P. stagnalis + P. belewski, which differ greatly by the organization of their flagella basal apparatus.

Evolution of Archamoebae: morphological and molecular evidence for pelobionts including Rhizomastix, Entamoeba, Iodamoeba, and Endolimax.

The archamoebae form a small clade of anaerobic/microaerophilic flagellates or amoebae, comprising the pelobionts (mastigamoebids and pelomyxids) and the entamoebae. It is a member of the eukaryotic supergroup Amoebozoa. We examined 22 strains of 13 species of Mastigamoeba, Pelomyxa and Rhizomastix by light-microscopy and determined their SSU rRNA gene sequences. The SSU rRNA gene sequences of Pelomyxa palustris and Mastigella commutans in GenBank are shown to belong to P. stagnalis and Mastigamoeba punctachora, respectively. Five new species of free-living archamoebae are described: Mastigamoeba abducta, M. errans, M. guttula, M. lenta, and Rhizomastix libera spp. nov. A species of Mastigamoeba possibly living endosymbiotically in Pelomyxa was identified. Rhizomastix libera, the first known free-living member of that genus, is shown to be an archamoeba. R. libera possesses an ultrastructure unique within archamoebae: a rhizostyle formed from a modified microtubular cone and a flagellum with vanes. While many nominal species of pelobionts are extremely hard to distinguish by light microscopy, transient pseudopodial characters are worthy of further investigation as taxonomic markers.

[Comparative morphology of the subphilum Conosa Cavalier-Smith 1998].

Comparative analysis of archamoebae and slime molds morphology revealed that this organisms have a marked similarity in organization of locomotive forms, structure of glycocalix and also in organization of nuclear and flagellar apparatus. A possible scheme of formation the modern diversity of Conosa group was proposed.

[Morphology of Mastigamoeba aspera Schulze, 1875 (Archamoebae, Pelobiontida)].

The morphology of Mastigamoeba aspera, a type species of the genus Mastigamoeba Schulze, 1875, has been investigated at the light- and electron-microscopical level. Motile individuals are oval or peach-shaped. Motile flagella is situated at the anterior end of uninucleate cells. During locomotion, the surface of mastigamoebes forms many conical or finger-shaped hyaline pseudopodia, wereas bulbous uroid is often formed at the posterior end of the cell. Micropopulations of M. aspera consist of uninucleate flagellate forms as well as multinucleate aflagellate ones. There is a thick layer ofglycocalix on the cell surface where many rod-shaped bacterial ectobionts live. The nucleus is vesicular with spherical central nucleolus. The flagellar apparatus of M. aspera is connected with nucleus to form so called kariomastigont. A single kinetosome is associated with many radial microtubules and a lateral root. A distinct microtubule organization centre (MTOC) is situated at the basal part of the kinetosome. Microtubules of the nuclear cone are connected with the MTOC. This microtubules take part in the formation of kariomastigont. The axoneme has a standart set of microtubules 9(2)+2. Digestive vacuoles are the main component of the cytoplasm of M. aspera. Beside, many light-difracted granules and glycogen bodies were found in the cells. Mitochondria, dictyosomes of the Golgi apparatus and microbodies were not revealed in the cytoplasm of M. aspera.

[Light- and electron-microscopical study of Pelomyxa flava sp. n. (archamoebae, pelobiontida)].

Using light and electron microscopy, the morphology of a new species of pelobionts Pelomyxa flava was studied. The coverings of P. flava are represented by plasma membrane bearing the thick layer of weakly structured glycocalyx on its outer surface. Numerous flagella are often located on the tops of short conical pseudopodia. Kinetosomes of flagella reach a length of 0.9 microm and are hollow with a pronounced central filament. Rootlet system is represented by three groups of microtubules: the radial, basal and microtubules of lateral root. The transition zone is short and does not exceed the level of cell surface; the axoneme is characterized by an unstable set of microtubules. Trophic stages of P. flava life cycle are presented by binuclear cells; plasmotomy is performed at the tetranuclear stage. Nuclei have a granular structure. Fibrillar nuclear bodies were revealed in karyoplasm. The nuclei shell has a complex organization. On its surface, the outer membrane has a layer of electron-dense material which contacts with short microtubules, located in a row at the surface of the nuclear envelope. The bubbles and cisterns of endoplasmic reticulum, which are the derivatives of the nuclear envelope, are located outward from the microtubules. The presence of structural and digestive vacuoles and grains of glycogen was noticed in P. flava endoplasm. Three types of prokaryotic cytobionts were revealed. Large multi-membranous organelles reaching 5 pm in diameter were described for the first time. We discuss morphology and biology features of P. flava in comparison with the previously studied Pelomyxa species.

[Light- and electron-microscopical study of Pelomyxa stagnalis Sp. n. (Archamoebae, Pelobiontida)].

The structure of a new pelomyxa species was investigated with the use of light- and electron-microscope technique. Motile individuals reach 800 microm in length. There is a thin layer of amorphous glycocalix on the cell surface. Many non-motile flagellae are found mainly in the uroidal zone. The axoneme has a non-stable set of microtubules. There are no any special elements in the transition zone. A short kinetosome is about 150 nm long. A bundle of 15-20 microtubules starts from the one side of kinetosome and pass below the cell surface. Structure vacuoles are one of the main cytoplasm components of Pelomyxa stagnalis. Glycogen bodies are surrounded with flattened reticulum cisterns often containing electron-dense material. Two morphological distinct species if prokaryote endobionts were found in the cells of P. stagnalis. The number of nuclei in the cells of P. stagnalis reaches 50 or more. The nuclei are rounded by a two-layer envelope including a multilaminar layer and outer layer, which is formed by small vesicles often containing electron-dense material. One nucleolus is situated at the center of a nucleus. In the nuclei, often in connection with the nucleolus, there are bodies formed by electron-dense threads.