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1.
Appl Microbiol Biotechnol ; 105(18): 6899-6908, 2021 Sep.
Article in English | MEDLINE | ID: mdl-34455479

ABSTRACT

Lysine, a nutritionally important amino acid, is involved in adaptation and tolerance to environmental stresses in various organisms. Previous studies reported that lysine accumulation occurs in response to stress and that lysine supplementation enhances stress tolerance; however, the effect of lysine biosynthesis enhancement on stress tolerance has yet to be elucidated. In this study, we confirmed that lysine supplementation to the culture medium increased intracellular lysine content and improved cell growth of Escherichia coli at high temperature (42.5 °C). Lysine-overproducing strains were then isolated from the lysine analogue S-adenosylmethionine-resistant mutants by conventional mutagenesis and exhibited higher tolerance to high-temperature stress than the wild-type strain. We identified novel amino acid substitutions Gly474Asp and Cys554Tyr on ThrA, a bifunctional aspartate kinase/homoserine dehydrogenase (AK/HSDH), in the lysine-overproducing mutants. Interestingly, the Gly474Asp and Cys554Tyr variants of ThrA induced lysine accumulation and conferred high-temperature stress tolerance to E. coli cells. Enzymatic analysis revealed that the Gly474Asp substitution in ThrA reduced HSDH activity, suggesting that the intracellular level of aspartate semialdehyde, which is a substrate for HSDH and an intermediate for lysine biosynthesis, is elevated by the loss of HSDH activity and converted to lysine in E. coli. The present study demonstrated that both lysine supplementation and lysine biosynthesis enhancement improved the high-temperature stress tolerance of E. coli cells. Our findings suggest that lysine-overproducing strains have the potential as stress-tolerant microorganisms and can be applied to robust host cells for microbial production of useful compounds. KEY POINTS: • Lysine supplementation improved the growth of E. coli cells at high temperature. • The G474D and C554Y variant ThrA increased lysine productivity in E. coli cells. • The G474D substitution in ThrA reduced homoserine dehydrogenase activity. • E. coli cells that overproduce lysine exhibited high-temperature stress tolerance.


Subject(s)
Aspartokinase Homoserine Dehydrogenase , Escherichia coli , Amino Acids , Escherichia coli/genetics , Lysine , Temperature
2.
Biosci Biotechnol Biochem ; 82(12): 2084-2093, 2018 Dec.
Article in English | MEDLINE | ID: mdl-30175674

ABSTRACT

The orientation of the three domains in the bifunctional aspartate kinase-homoserine dehydrogenase (AK-HseDH) homologue found in Thermotoga maritima totally differs from those observed in previously known AK-HseDHs; the domains line up in the order HseDH, AK, and regulatory domain. In the present study, the enzyme produced in Escherichia coli was characterized. The enzyme exhibited substantial activities of both AK and HseDH. L-Threonine inhibits AK activity in a cooperative manner, similar to that of Arabidopsis thaliana AK-HseDH. However, the concentration required to inhibit the activity was much lower (K0.5 = 37 µM) than that needed to inhibit the A. thaliana enzyme (K0.5 = 500 µM). In contrast to A. thaliana AK-HseDH, Hse oxidation of the T. maritima enzyme was almost impervious to inhibition by L-threonine. Amino acid sequence comparison indicates that the distinctive sequence of the regulatory domain in T. maritima AK-HseDH is likely responsible for the unique sensitivity to L-threonine. Abbreviations: AK: aspartate kinase; HseDH: homoserine dehydrogenase; AK-HseDH: bifunctional aspartate kinase-homoserine dehydrogenase; AsaDH: aspartate-ß-semialdehyde dehydrogenase; ACT: aspartate kinases (A), chorismate mutases (C), and prephenate dehydrogenases (TyrA, T).


Subject(s)
Aspartokinase Homoserine Dehydrogenase/metabolism , Thermotoga maritima/enzymology , Amino Acid Sequence , Aspartic Acid/metabolism , Aspartokinase Homoserine Dehydrogenase/chemistry , Aspartokinase Homoserine Dehydrogenase/genetics , Biocatalysis , Electrophoresis, Polyacrylamide Gel , Enzyme Stability , Escherichia coli/genetics , Hot Temperature , Hydrogen-Ion Concentration , Kinetics , Protein Conformation , Recombinant Proteins/genetics , Sequence Homology, Amino Acid , Threonine/metabolism
3.
Plant Physiol ; 168(4): 1512-26, 2015 Aug.
Article in English | MEDLINE | ID: mdl-26063505

ABSTRACT

Biosynthesis of aspartate (Asp)-derived amino acids lysine (Lys), methionine (Met), threonine (Thr), and isoleucine involves monofunctional Asp kinases (AKs) and dual-functional Asp kinase-homoserine dehydrogenases (AK-HSDHs). Four-week-old loss-of-function Arabidopsis (Arabidopsis thaliana) mutants in the AK-HSDH2 gene had increased amounts of Asp and Asp-derived amino acids, especially Thr, in leaves. To explore mechanisms behind this phenotype, we obtained single mutants for other AK and AK-HSDH genes, generated double mutants from ak-hsdh2 and ak mutants, and performed free and protein-bound amino acid profiling, transcript abundance, and activity assays. The increases of Asp, Lys, and Met in ak-hsdh2 were also observed in ak1-1, ak2-1, ak3-1, and ak-hsdh1-1. However, the Thr increase in ak-hsdh2 was observed in ak-hsdh1-1 but not in ak1-1, ak2-1, or ak3-1. Activity assays showed that AK2 and AK-HSDH1 are the major contributors to overall AK and HSDH activities, respectively. Pairwise correlation analysis revealed positive correlations between the amount of AK transcripts and Lys-sensitive AK activity and between the amount of AK-HSDH transcripts and both Thr-sensitive AK activity and total HSDH activity. In addition, the ratio of total AK activity to total HSDH activity negatively correlates with the ratio of Lys to the total amount of Met, Thr, and isoleucine. These data led to the hypothesis that the balance between Lys-sensitive AKs and Thr-sensitive AK-HSDHs is important for maintaining the amounts and ratios of Asp-derived amino acids.


Subject(s)
Amino Acids/genetics , Arabidopsis Proteins/genetics , Aspartate Kinase/genetics , Aspartic Acid/genetics , Aspartokinase Homoserine Dehydrogenase/genetics , Mutation , Amino Acids/metabolism , Arabidopsis/genetics , Arabidopsis/metabolism , Arabidopsis Proteins/metabolism , Aspartate Kinase/metabolism , Aspartic Acid/metabolism , Aspartokinase Homoserine Dehydrogenase/metabolism , Chromatography, High Pressure Liquid , Gene Expression Regulation, Enzymologic , Gene Expression Regulation, Plant , Immunoblotting , Isoenzymes/genetics , Isoenzymes/metabolism , Lysine/genetics , Lysine/metabolism , Methionine/genetics , Methionine/metabolism , Plant Leaves/genetics , Plant Leaves/metabolism , Reverse Transcriptase Polymerase Chain Reaction , Tandem Mass Spectrometry , Threonine/genetics , Threonine/metabolism
4.
J Bioinform Comput Biol ; 4(2): 335-55, 2006 Apr.
Article in English | MEDLINE | ID: mdl-16819787

ABSTRACT

In our effort to elucidate the systems biology of the model organism, Escherichia coli, we have developed a mathematical model that simulates the allosteric regulation for threonine biosynthesis pathway starting from aspartate. To achieve this goal, we used kMech, a Cellerator language extension that describes enzyme mechanisms for the mathematical modeling of metabolic pathways. These mechanisms are converted by Cellerator into ordinary differential equations (ODEs) solvable by Mathematica. In this paper, we describe a more flexible model in Cellerator, which generalizes the Monod, Wyman, Changeux (MWC) model for enzyme allosteric regulation to allow for multiple substrate, activator and inhibitor binding sites. Furthermore, we have developed a model that describes the behavior of the bifunctional allosteric enzyme aspartate kinase I-homoserine dehydrogenase I (AKI-HDHI). This model predicts the partition of enzyme activities in the steady state which paves the way for a more generalized prediction of the behavior of bifunctional enzymes.


Subject(s)
Aspartic Acid/metabolism , Aspartokinase Homoserine Dehydrogenase/metabolism , Escherichia coli/metabolism , Models, Biological , Multienzyme Complexes/metabolism , Signal Transduction/physiology , Threonine/biosynthesis , Algorithms , Allosteric Regulation/physiology , Computer Simulation , Escherichia coli Proteins/metabolism , Gene Expression Regulation/physiology
5.
Plant Mol Biol ; 51(2): 281-94, 2003 Jan.
Article in English | MEDLINE | ID: mdl-12602885

ABSTRACT

An aspartate kinase-homoserine dehydrogenase (AK-HSDH) cDNA of Arabidopsis thaliana has been cloned by functional complementation of a Saccharomyces cerevisiae strain mutated in its homoserine dehydrogenase (HSDH) gene (hom6). Two of the three isolated clones were also able to complement a mutant yeast aspartate kinase (AK) gene (hom3). Sequence analysis showed that the identified gene (akthr2), located on chromosome 4, is different from the previously cloned A. thaliana AK-HSDH gene (akthr1), and corresponds to a novel bifunctional AK-HSDH gene. Expression of the isolated akthr2 cDNA in a HSDH-less hom6 yeast mutant conferred threonine and methionine prototrophy to the cells. Cell-free extracts contained a threonine-sensitive HSDH activity with feedback properties of higher plant type. Correspondingly, cDNA expression in an AK-deficient hom3 yeast mutant resulted in threonine and methionine prototrophy and a threonine-sensitive AK activity was observed in cell-free extracts. These results confirm that akthr2 encodes a threonine-sensitive bifunctional enzyme. Transgenic Arabidopsis thaliana plants (containing a construct with the promoter region of akthr2 in front of the gus reporter gene) were generated to compare the expression pattern of the akthr2 gene with the pattern of akthr1 earlier described in tobacco. The two genes are simultaneously expressed in meristematic cells, leaves and stamens. The main differences between the two genes concern the time-restricted or absent expression of the akthr2 gene in the stem, the gynoecium and during seed formation, while akthr1 is less expressed in roots.


Subject(s)
Arabidopsis/genetics , Aspartokinase Homoserine Dehydrogenase/genetics , Homoserine Dehydrogenase/genetics , Saccharomyces cerevisiae/genetics , Amino Acid Sequence , Arabidopsis/enzymology , Aspartokinase Homoserine Dehydrogenase/isolation & purification , Aspartokinase Homoserine Dehydrogenase/metabolism , Base Sequence , Chromosome Mapping , Chromosomes, Plant/genetics , Exons , Gene Expression Regulation, Enzymologic , Genes, Plant/genetics , Genetic Complementation Test , Glucuronidase/genetics , Glucuronidase/metabolism , Homoserine Dehydrogenase/metabolism , Introns , Isoenzymes/genetics , Isoenzymes/metabolism , Molecular Sequence Data , Multienzyme Complexes/genetics , Multienzyme Complexes/metabolism , Mutation , Promoter Regions, Genetic/genetics , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/metabolism , Saccharomyces cerevisiae/enzymology
6.
J Biol Chem ; 278(7): 5361-6, 2003 Feb 14.
Article in English | MEDLINE | ID: mdl-12435751

ABSTRACT

The regulatory domain of the bifunctional threonine-sensitive aspartate kinase homoserine dehydrogenase contains two homologous subdomains defined by a common loop-alpha helix-loop-beta strand-loop-beta strand motif. This motif is homologous with that found in the two subdomains of the biosynthetic threonine-deaminase regulatory domain. Comparisons of the primary and secondary structures of the two enzymes allowed us to predict the location and identity of the amino acid residues potentially involved in two threonine-binding sites of Arabidopsis thaliana aspartate kinase-homoserine dehydrogenase. These amino acids were then mutated and activity measurements were carried out to test this hypothesis. Steady-state kinetic experiments on the wild-type and mutant enzymes demonstrated that each regulatory domain of the monomers of aspartate kinase-homoserine dehydrogenase possesses two nonequivalent threonine-binding sites constituted in part by Gln(443) and Gln(524). Our results also demonstrated that threonine interaction with Gln(443) leads to inhibition of aspartate kinase activity and facilitates the binding of a second threonine on Gln(524). Interaction of this second threonine with Gln(524) leads to inhibition of homoserine dehydrogenase activity.


Subject(s)
Arabidopsis/enzymology , Aspartokinase Homoserine Dehydrogenase/analysis , Amino Acid Sequence , Arabidopsis/genetics , Aspartokinase Homoserine Dehydrogenase/genetics , Aspartokinase Homoserine Dehydrogenase/metabolism , Enzyme Activation/genetics , Kinetics , Molecular Sequence Data , Mutation , Plant Proteins/genetics , Plant Proteins/metabolism , Structure-Activity Relationship , Threonine
7.
Biochemistry ; 41(11): 3726-31, 2002 Mar 19.
Article in English | MEDLINE | ID: mdl-11888290

ABSTRACT

The direct channeling of an intermediate between enzymes that catalyze consecutive reactions in a pathway offers the possibility of an efficient, exclusive, and protected means of metabolite delivery. Aspartokinase-homoserine dehydrogenase I (AK-HDH I) from Escherichia coli is an unusual bifunctional enzyme in that it does not catalyze consecutive reactions. The potential channeling of the intermediate beta-aspartyl phosphate between the aspartokinase of this bifunctional enzyme and aspartate semialdehyde dehydrogenase (ASADH), the enzyme that catalyzes the intervening reaction, has been examined. The introduction of increasing levels of inactivated ASADH has been shown to compete against enzyme-enzyme interactions and direct intermediate channeling, leading to a decrease in the overall reaction flux through these consecutive enzymes. These same results are obtained whether these experiments are conducted with aspartokinase III, a naturally occurring monofunctional isozyme, with an artificially produced monofunctional aspartokinase I, or with a fusion construct of AK I-ASADH. These results provide definitive evidence for the channeling of beta-aspartyl phosphate between aspartokinase and aspartate semialdehyde dehydrogenase in E. coli and suggest that ASADH may provide a bridge to channel the intermediates between the non-consecutive reactions of AK-HDH I.


Subject(s)
Aspartic Acid/metabolism , Aspartokinase Homoserine Dehydrogenase/chemical synthesis , Aspartokinase Homoserine Dehydrogenase/metabolism , Multienzyme Complexes/chemical synthesis , Multienzyme Complexes/metabolism , Aspartokinase Homoserine Dehydrogenase/antagonists & inhibitors , Multienzyme Complexes/antagonists & inhibitors , Substrate Specificity
8.
Protein Expr Purif ; 24(1): 105-10, 2002 Feb.
Article in English | MEDLINE | ID: mdl-11812230

ABSTRACT

In plant, the first and the third steps of the synthesis of methionine and threonine are catalyzed by a bifunctional enzyme, aspartate kinase-homoserine dehydrogenase (AK-HSDH). In this study, we report the first purification and characterization of a highly active threonine-sensitive AK-HSDH from plants (Arabidopsis thaliana). The specific activities corresponding to the forward reaction of AK and reverse reaction of HSDH of AK-HSDH were 5.4 micromol of aspartyl phosphate produced min(-1) mg(-1) of protein and 18.8 micromol of NADPH formed min(-1) mg(-1) of protein, respectively. These values are 200-fold higher than those reported previously for partially purified plant enzymes. AK-HSDH exhibited hyperbolic kinetics for aspartate, ATP, homoserine, and NADP with K(M) values of 11.6 mM, 5.5 mM, 5.2 mM, and 166 microM, respectively. Threonine was found to inhibit both AK and HSDH activities by decreasing the affinity of the enzyme for its substrates and cofactors. In the absence of threonine, AK-HSDH behaved as an oligomer of 470 kDa. Addition of the effector converted the enzyme into a tetrameric form of 320 kDa.


Subject(s)
Arabidopsis/enzymology , Aspartokinase Homoserine Dehydrogenase/isolation & purification , Aspartokinase Homoserine Dehydrogenase/chemistry , Aspartokinase Homoserine Dehydrogenase/genetics , Cloning, Molecular , Escherichia coli , Gene Expression , Kinetics , Recombinant Proteins/genetics , Recombinant Proteins/isolation & purification , Recombinant Proteins/metabolism , Threonine/metabolism
9.
Science ; 272(5260): 414-7, 1996 Apr 19.
Article in English | MEDLINE | ID: mdl-8602531

ABSTRACT

Nitric oxide (NO) is associated with broad-spectrum antimicrobial activity of particular importance in infections caused by intracellular pathogens. An insertion mutation in the metL gene of Salmonella typhimurium conferred specific hypersusceptibility to S-nitrosothiol NO-donor compounds and attenuated virulence of the organism in mice. The metL gene product catalyzes two proximal metabolic steps required for homocysteine biosynthesis. S-Nitrosothiol resistance was restored by exogenous homocysteine or introduction of the metL gene on a plasmid. Measurement of expression of the homocysteine-sensitive metH gene indicated that S-nitrosothiols may directly deplete intracellular homocysteine. Homocysteine may act as an endogenous NO antagonist in diverse processes including infection, atherosclerosis, and neurologic disease.


Subject(s)
Aspartokinase Homoserine Dehydrogenase/metabolism , Homocysteine/physiology , Mercaptoethanol , Nitric Oxide/antagonists & inhibitors , S-Nitrosothiols , Salmonella typhimurium/physiology , Animals , Aspartokinase Homoserine Dehydrogenase/genetics , Base Sequence , Drug Resistance, Microbial , Female , Glutathione/analogs & derivatives , Glutathione/pharmacology , Homocysteine/metabolism , Homocysteine/pharmacology , Mice , Mice, Inbred C3H , Microbial Sensitivity Tests , Molecular Sequence Data , Mutagenesis, Insertional , Nitric Oxide/metabolism , Nitroso Compounds/pharmacology , S-Nitrosoglutathione , Salmonella Infections, Animal/microbiology , Salmonella typhimurium/cytology , Salmonella typhimurium/drug effects , Salmonella typhimurium/pathogenicity , Virulence
10.
Biochem J ; 309 ( Pt 3): 999-1007, 1995 Aug 01.
Article in English | MEDLINE | ID: mdl-7639721

ABSTRACT

The coding regions for the Escherichia coli gene for aspartokinase I/homoserine dehydrogenase I (thrA) and the Corynebacterium glutamicum gene for aspartic semialdehyde dehydrogenase (asd) have been subcloned into a Simian Virus 40 (SV40)-based mammalian expression vector. Both enzyme activities are expressed in mouse 3T3 cells after transfer of the corresponding chimaeric gene. The kinetic parameters are similar to those of the native bacterial enzymes, and aspartokinase I/homoserine dehydrogenase I retains its allosteric regulation by threonine. An extract of the cells expressing aspartokinase I/homoserine dehydrogenase I, mixed with one from cells expressing aspartic semialdehyde dehydrogenase, produced homoserine when the mixture was incubated with aspartic acid, ATP and NADPH. The thrA and asd expression cassettes were combined into a single plasmid which, when transfected into 3T3 cells, enabled them to produce homoserine from aspartic acid. Homoserine-producing 3T3 cells were transfected with the plasmid pSVthrB/C (homoserine kinase and threonine synthase) and selected for growth on homoserine. Cell lines isolated from these cells expressed the complete bacterial threonine pathway, were independent of threonine for growth and could be maintained in medium which contained no free threonine. The threonine in the proteins of these cells became enriched in 15N when the culture medium contained [15N]aspartic acid. The production of homoserine and the growth of cells was at a maximum when there was more than 2.5 mM aspartate in the medium. Below this concentration the high Km of aspartokinase limited the flux through the pathway. In the presence of additional aspartic acid the new pathway could sustain a cell cycle time close to that of the same cells cultured in threonine-containing medium.


Subject(s)
Aspartate-Semialdehyde Dehydrogenase/genetics , Aspartokinase Homoserine Dehydrogenase/genetics , Corynebacterium/enzymology , Escherichia coli/enzymology , Threonine/biosynthesis , 3T3 Cells , Animals , Aspartate-Semialdehyde Dehydrogenase/metabolism , Aspartokinase Homoserine Dehydrogenase/metabolism , Base Sequence , Cloning, Molecular , Corynebacterium/genetics , DNA Primers , Escherichia coli/genetics , Kinetics , Mice , Molecular Sequence Data , Plasmids , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Threonine/genetics
11.
Plant Mol Biol ; 24(6): 835-51, 1994 Mar.
Article in English | MEDLINE | ID: mdl-8204822

ABSTRACT

The gene encoding Arabidopsis thaliana aspartate kinase (ATP:L-aspartate 4-phosphotransferase, EC 2.7.2.4) was isolated from genomic DNA libraries using the carrot ak-hsdh gene as the hybridizing probe. Two genomic libraries from different A. thaliana races were screened independently with the ak probe and the hsdh probe. Nucleotide sequences of the A. thaliana overlapping clones were determined and encompassed 2 kb upstream of the coding region and 300 bp downstream. The corresponding cDNA was isolated from a cDNA library made from poly(A)(+)-mRNA extracted from cell suspension cultures. Sequence comparison between the Arabidopsis gene product and an AK-HSDH bifunctional enzyme from carrot and from the Escherichia coli thrA and metL genes shows 80%, 37.5% and 31.4% amino acid sequence identity, respectively. The A. thaliana ak-hsdh gene is proposed to be the plant thrA homologue coding for the AK isozyme feedback inhibited by threonine. The gene is present in A. thaliana in single copy and functional as evidenced by hybridization analyses. The apoprotein-coding region is interrupted by 15 introns ranging from 78 to 134 bp. An upstream chloroplast-targeting sequence with low sequence similarity with the carrot transit peptide was identified. A signal sequence is proposed starting from a functional ATG initiation codon to the first exon of the apoprotein. Two additional introns were identified: one in the 5' non-coding leader sequence and the other in the putative chloroplast targeting sequence. 5' sequence analysis revealed the presence of several possible promoter elements as well as conserved regulatory motifs. Among these, an Opaque2 and a yeast GCN4-like recognition element might be relevant for such a gene coding for an enzyme limiting the carbon-flux entry to the biosynthesis of several essential amino acids. 3' sequence analysis showed the occurrence of two polyadenylation signals upstream of the polyadenylation site. This work is the first report of the molecular cloning of a plant ak-hsdh genomic sequence. It describes a promoter element that may bring new insights to the regulation of the biosynthesis of the aspartate family of amino acids.


Subject(s)
Arabidopsis/genetics , Aspartokinase Homoserine Dehydrogenase/genetics , Genes, Plant , Amino Acid Sequence , Arabidopsis/enzymology , Base Sequence , Cloning, Molecular , DNA, Complementary , Escherichia coli/genetics , Isoenzymes/genetics , Molecular Sequence Data , Polymorphism, Genetic , Regulatory Sequences, Nucleic Acid , Restriction Mapping , Sequence Homology, Amino Acid , Vegetables/genetics
12.
Plant Mol Biol ; 22(2): 301-12, 1993 May.
Article in English | MEDLINE | ID: mdl-8507831

ABSTRACT

Aspartokinase (EC 2.7.2.4) and homoserine dehydrogenase (EC 1.1.1.3) catalyze steps in the pathway for the synthesis of lysine, threonine, and methionine from aspartate. Homoserine dehydrogenase was purified from carrot (Daucus carota L.) cell cultures and portions of it were subjected to amino acid sequencing. Oligonucleotides deduced from the amino acid sequences were used as primers in a polymerase chain reaction to amplify a DNA fragment using DNA derived from carrot cell culture mRNA as template. The amplification product was radiolabelled and used as a probe to identify cDNA clones from libraries derived from carrot cell culture and root RNA. Two overlapping clones were isolated. Together the cDNA clones delineate a 3089 bp long sequence encompassing an open reading frame encoding 921 amino acids, including the mature protein and a long chloroplast transit peptide. The deduced amino acid sequence has high homology with the Escherichia coli proteins aspartokinase I-homoserine dehydrogenase I and aspartokinase II-homoserine dehydrogenase II. Like the E. coli genes the isolated carrot cDNA appears to encode a bifunctional aspartokinase-homoserine dehydrogenase enzyme.


Subject(s)
Aspartate Kinase/genetics , Aspartokinase Homoserine Dehydrogenase/genetics , Homoserine Dehydrogenase/genetics , Multienzyme Complexes/genetics , Plants, Edible/genetics , Amino Acid Sequence , Base Sequence , Cloning, Molecular , Molecular Sequence Data , Plants, Edible/enzymology , Polymerase Chain Reaction , RNA, Messenger/genetics , Sequence Homology, Amino Acid
13.
Arch Biochem Biophys ; 301(2): 416-23, 1993 Mar.
Article in English | MEDLINE | ID: mdl-8460951

ABSTRACT

Changes in the kinetic properties of homoserine dehydrogenase-I (HD-I) from Escherichia coli, caused by substitution of Na+ for the normal activating monovalent ion, K+, has been investigated by equilibrium isotope exchange kinetics (EIEK). HD-I, part of the aspartokinase/homoserine dehydrogenase-I complex, is one of the few dehydrogenases to exhibit allosteric feedback regulation and cation activation. EIEK methods are especially useful for definitively identifying which rate constants are altered by bound modifiers. Saturation curves for the [14C]Hse<-->ASA and [3H]NADP+<-->NADPH exchanges were compared in the presence of K+ vs Na+, varying different combinations of substrate pairs in constant ratio at equilibrium. Kinetic differences between the K+ and Na+ enzymes were analyzed systematically by simulations with the ISOBI program. This analysis clearly demonstrates that substituting Na+ for K+ shifts the kinetic mechanism from preferred order random to a nearly random order scheme, along with causing significant rate limitation at catalysis between the central complexes. Initial velocity kinetics demonstrate that HD-I has a 10-fold higher affinity for Na+ than K+, but that the Na(+)-enzyme is 10-fold less active and exhibits higher substrate Km values, especially for L-Hse.


Subject(s)
Aspartokinase Homoserine Dehydrogenase/metabolism , Cations, Monovalent/pharmacology , Escherichia coli/enzymology , Allosteric Regulation , Aspartic Acid/analogs & derivatives , Aspartic Acid/metabolism , Aspartokinase Homoserine Dehydrogenase/drug effects , Dose-Response Relationship, Drug , Enzyme Activation , Homoserine/metabolism , Kinetics , Models, Biological , NADP/metabolism , Potassium/pharmacology , Sodium/pharmacology
14.
Arch Biochem Biophys ; 283(1): 96-101, 1990 Nov 15.
Article in English | MEDLINE | ID: mdl-2241177

ABSTRACT

The kinetic mechanisms of the reactions catalyzed by the two catalytic domains of aspartokinase-homoserine dehydrogenase I from Escherichia coli have been determined. Initial velocity, product inhibition, and dead-end inhibition studies of homoserine dehydrogenase are consistent with an ordered addition of NADPH and aspartate beta-semialdehyde followed by an ordered release of homoserine and NADP+. Aspartokinase I catalyzes the phosphorylation of a number of L-aspartic acid analogues and, moreover, can utilize MgdATP as a phosphoryl donor. Because of this broad substrate specificity, alternative substrate diagnostics was used to probe the kinetic mechanism of this enzyme. The kinetic patterns showed two sets of intersecting lines that are indicative of a random mechanism. Incorporation of these results with the data obtained from initial velocity, product inhibition, and dead-end inhibition studies at pH 8.0 are consistent with a random addition of L-aspartic acid and MgATP and an ordered release of MgADP and beta-aspartyl phosphate.


Subject(s)
Aspartokinase Homoserine Dehydrogenase/metabolism , Escherichia coli/enzymology , Adenosine Diphosphate/metabolism , Adenosine Triphosphate/metabolism , Aspartic Acid/metabolism , Kinetics , Mathematics , Models, Theoretical
15.
Biochimie ; 70(12): 1807-14, 1988 Dec.
Article in English | MEDLINE | ID: mdl-3150686

ABSTRACT

The allosteric transition of threonine-sensitive aspartokinase I-homoserine dehydrogenase I from Escherichia coli has been studied by time-resolved fluorescence spectroscopy. Fluorescence decay can be resolved into 2 distinct classes of tryptophan emitters: a fast component, with a lifetime of about 1.5 ns; and a slow component, with a lifetime of about 4.5 ns. The fluorescence properties of the slow component are modified by the allosteric transition. In the T-form of the enzyme stabilized by threonine, the lifetime of the slow component is longer, with a red-shifted spectrum; its accessibility to quenching by acrylamide becomes slightly higher without any decrease of fluorescence anisotropy. These results indicate a change in polarity of the slow component environment. The quaternary structure change associated with the allosteric transition probably involves global movements of structural domains without leading to any local mobility on the nanosecond time-scale. We suggest that the slow component corresponds to the unique tryptophan of the buried kinase domain.


Subject(s)
Aspartokinase Homoserine Dehydrogenase , Multienzyme Complexes , Acrylamide , Acrylamides/pharmacology , Allosteric Regulation , Energy Transfer , Escherichia coli/enzymology , Fluoroimmunoassay , Protein Conformation , Quantum Theory , Spectrometry, Fluorescence , Threonine , Tryptophan
16.
J Biol Chem ; 263(29): 14654-60, 1988 Oct 15.
Article in English | MEDLINE | ID: mdl-3139660

ABSTRACT

The Bacillus subtilis hom gene, encoding homoserine dehydrogenase (L-homoserine:NADP+ oxidoreductase, EC 1.1.1.3) has been cloned and its nucleotide sequence determined. The B. subtilis enzyme expressed in Escherichia coli is sensitive by inhibition by threonine and allows complementation of a strain lacking homoserine dehydrogenases I and II. Nucleotide sequence analysis indicates that the hom stop codon overlaps the start codon of thrC (threonine synthase) suggesting that these genes, as well as thrB (homoserine kinase) located downstream from thrC, belong to the same transcription unit. The deduced amino acid sequence of the B. subtilis homoserine dehydrogenase shows extensive similarity with the C-terminal part of E. coli aspartokinases-homoserine dehydrogenases I and II; this similarity starts at the exact point where the similarity between E. coli or B. subtilis aspartokinases and E. coli aspartokinases-homoserine dehydrogenases stops. These data suggest that the E. coli bifunctional polypeptide could have resulted from the direct fusion of ancestral aspartokinase and homoserine dehydrogenase. The B. subtilis homoserine dehydrogenase has a C-terminal extension of about 100 residues (relative to the E. coli enzymes) that could be involved in the regulation of the enzyme activity.


Subject(s)
Alcohol Oxidoreductases/genetics , Aspartokinase Homoserine Dehydrogenase/genetics , Bacillus subtilis/genetics , Biological Evolution , Cloning, Molecular , Escherichia coli/genetics , Genes, Bacterial , Genes , Homoserine Dehydrogenase/genetics , Multienzyme Complexes/genetics , Amino Acid Sequence , Aspartate Kinase/genetics , Bacillus subtilis/enzymology , Base Sequence , Escherichia coli/enzymology , Molecular Sequence Data , Plasmids , Sequence Homology, Nucleic Acid , Species Specificity
17.
Biochemistry ; 26(10): 2785-90, 1987 May 19.
Article in English | MEDLINE | ID: mdl-3606993

ABSTRACT

The renaturation of aspartokinase-homoserine dehydrogenase and of some of its smaller fragments has been investigated after complete unfolding by 6 M guanidine hydrochloride. Fluorescence measurements show that a major folding reaction occurs rapidly (in less than a few seconds) after the protein has been transferred to native conditions and results in the shielding of the tryptophan residues from the aqueous solvent; this step also takes place in the fragments and probably corresponds to the independent folding of different segments along the polypeptide chain. The reappearance of the kinase activity, which is an index of the formation of "native" structure within a single chain, is much slower (a few minutes) and has the following properties: it is involved in a kinetic competition with the formation of aggregates; it has an activation energy of 22 +/- 5 kcal/mol; it is not related to a slow reaction in unfolding and thus probably not controlled by the cis-trans isomerization of X-Pro peptide bonds; its rate is inversely proportional to the solvent viscosity. It seems as if this reaction is limited by the mutual arrangement of the regions that have folded rapidly and independently. It is proposed that the mechanism where a fast folding of domains is followed by a slow pairing of folded domains could be generalized to other long chains composed of several domains; such a slow pairing of folded domains would correspond to a rate-limiting process specific to the renaturation of large proteins. The reappearance of the dehydrogenase activity measures the formation of a dimeric species. The dimerization can occur only after each chain has reached its "native" conformation.(ABSTRACT TRUNCATED AT 250 WORDS)


Subject(s)
Aspartokinase Homoserine Dehydrogenase/metabolism , Multienzyme Complexes/metabolism , Guanidine , Guanidines/pharmacology , Kinetics , Protein Conformation , Protein Denaturation , Spectrometry, Fluorescence
18.
Eur J Biochem ; 151(3): 521-4, 1985 Sep 16.
Article in English | MEDLINE | ID: mdl-3896789

ABSTRACT

Dimers of aspartokinase I/homoserine dehydrogenase I from Escherichia coli K 12 have been isolated under very mild conditions. The dimers which cannot be distinguished from the tetramers by their kinetic properties, reassociate in the presence of potassium ions or L-aspartate. The selective sensitivity of aspartokinase I/homoserine dehydrogenase I to mild proteolytic digestion of dimers has been used to probe the reassociation reaction under the conditions of aspartokinase assay. We demonstrate that rapid reassociation occurs and that the protein species present in the assay when dimers are used to test the activity is tetrameric. These results confirm the previously proposed model for the subunit association of aspartokinase I/homoserine dehydrogenase I.


Subject(s)
Aspartokinase Homoserine Dehydrogenase/metabolism , Escherichia coli/enzymology , Multienzyme Complexes/metabolism , Electrophoresis, Disc , Kinetics , Macromolecular Substances , Molecular Weight , Peptide Fragments/metabolism , Pronase
19.
Anal Biochem ; 147(2): 336-41, 1985 Jun.
Article in English | MEDLINE | ID: mdl-3893216

ABSTRACT

Improved purification schemes are reported for the enzymes L-aspartase and aspartokinase-homoserine dehydrogenase I from Escherichia coli. Dye-ligand chromatography on commercially available dye matrices are incorporated as key steps in these purifications. Red A-agarose has a high affinity for L-aspartase, which is then eluted as a homogeneous protein fraction with 1 mM L-aspartic acid. Green A-agarose shows a high binding affinity for the bifunctional enzyme aspartokinase-homoserine dehydrogenase I. Purification is accomplished by elution with NADP+, followed by formation of a ternary complex with NADP and cysteine, a good competitive inhibitor of the homoserine dehydrogenase activity, and rechromatography on Green A-agarose. The final specific activity of each purified enzyme equaled or exceeded previously reported values, the overall yield of enzymes obtained was significantly higher, and these improved purification schemes were found to be more amenable to being scaled up for the production of large quantities of purified enzyme.


Subject(s)
Ammonia-Lyases/isolation & purification , Aspartate Ammonia-Lyase/isolation & purification , Aspartokinase Homoserine Dehydrogenase/isolation & purification , Chromatography, Affinity/methods , Coloring Agents , Escherichia coli/enzymology , Multienzyme Complexes/isolation & purification , Chromatography, Agarose , Chromatography, DEAE-Cellulose
20.
FEBS Lett ; 181(2): 381-4, 1985 Feb 25.
Article in English | MEDLINE | ID: mdl-2982665

ABSTRACT

A proteolytic fragment (Mr approximately 25 000) carrying only the aspartokinase activity has been purified by chromatofocusing after limited proteolysis of aspartokinase I-homoserine dehydrogenase I from E.coli K12. The NH2-terminal sequence shows that it corresponds to the amino terminal peptide of the native enzyme. The results confirm a previous hypothesis about the organization of native aspartokinase I-homoserine dehydrogenase I.


Subject(s)
Aspartate Kinase/isolation & purification , Aspartokinase Homoserine Dehydrogenase/analysis , Escherichia coli/enzymology , Multienzyme Complexes/analysis , Phosphotransferases/isolation & purification , Amino Acid Sequence , Chromatography , Electrophoresis, Polyacrylamide Gel , Molecular Weight , Peptide Fragments/isolation & purification , Pronase/metabolism
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