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1.
PLoS One ; 16(8): e0256639, 2021.
Article in English | MEDLINE | ID: mdl-34437618

ABSTRACT

Pontibacillus sp. ALD_SL1 and Psychroflexus sp. ALD_RP9 are two novel bacterial isolates from mangrove sediment and a moderately hypersaline pool on the Aldabra Atoll, Seychelles. The isolates represent two novel species were characterised physiologically and genomically. Pontibacillus sp. ALD_SL1 is a facultatively anaerobic yellow, motile, rod-shaped Gram-positive, which grows optimally at a NaCl concentration of 11%, pH 7 and 28°C. It is the third facultatively anaerobic member of the genus Pontibacillus. The organism gains energy through the fermentation of pyruvate to acetate and ethanol under anaerobic conditions. The genome is the first among Pontibacillus that harbours a megaplasmid. Psychroflexus sp. ALD_RP9 is an aerobic heterotroph, which can generate energy by employing bacteriorhodopsins. It forms Gram-negative, orange, non-motile rods. The strain grows optimally at NaCl concentrations of 10%, pH 6.5-8 and 20°C. The Psychroflexus isolate tolerated pH conditions up to 10.5, which is the highest pH tolerance currently recorded for the genus. Psychroflexus sp. ALD_RP9 taxonomically belongs to the clade with the smallest genomes. Both isolates show extensive adaptations to their saline environments yet utilise different mechanisms to ensure survival.


Subject(s)
Bacillaceae/isolation & purification , Flavobacteriaceae/isolation & purification , Geologic Sediments/microbiology , Bacillaceae/enzymology , Bacillaceae/growth & development , Bacillaceae/ultrastructure , Flavobacteriaceae/enzymology , Flavobacteriaceae/growth & development , Flavobacteriaceae/ultrastructure , Genome, Bacterial , Kinetics , Phylogeny , Seychelles , Water Microbiology
2.
Elife ; 82019 07 08.
Article in English | MEDLINE | ID: mdl-31282860

ABSTRACT

Iron storage proteins are essential for cellular iron homeostasis and redox balance. Ferritin proteins are the major storage units for bioavailable forms of iron. Some organisms lack ferritins, and it is not known how they store iron. Encapsulins, a class of protein-based organelles, have recently been implicated in microbial iron and redox metabolism. Here, we report the structural and mechanistic characterization of a 42 nm two-component encapsulin-based iron storage compartment from Quasibacillus thermotolerans. Using cryo-electron microscopy and x-ray crystallography, we reveal the assembly principles of a thermostable T = 4 shell topology and its catalytic ferroxidase cargo and show interactions underlying cargo-shell co-assembly. This compartment has an exceptionally large iron storage capacity storing over 23,000 iron atoms. Our results reveal a new approach for survival in diverse habitats with limited or fluctuating iron availability via an iron storage system able to store 10 to 20 times more iron than ferritin.


Subject(s)
Bacillaceae/metabolism , Bacterial Proteins/metabolism , Iron/metabolism , Organelles/metabolism , Bacillaceae/ultrastructure , Bacterial Proteins/chemistry , Ceruloplasmin/chemistry , Ceruloplasmin/metabolism , Cryoelectron Microscopy , Crystallography, X-Ray , Ferritins/chemistry , Ferritins/metabolism , Homeostasis , Models, Molecular , Organelles/ultrastructure , Protein Conformation
3.
J Hazard Mater ; 368: 149-155, 2019 04 15.
Article in English | MEDLINE | ID: mdl-30677647

ABSTRACT

The Cr(Ⅵ) removal way and Cr(Ⅵ) reducing site of Oceanobacillus oncorhynchi W4, a novel Cr(Ⅵ) reducing bacterium, were investigated in this study. Results showed that about 74.2% of Cr(Ⅵ) was removed from solution by growing cells within 72 h. Moreover, heating-killed resting cells had little Cr(Ⅵ) removal capacity, which was significantly lower than that of resting cells, which reached nearly 80% removal rate, suggesting that the way of Cr(Ⅵ) removal mainly relied on biological reduction rather than biosorption. And the Cr(Ⅵ) reduction was found to be significantly enhanced by some electron donors, especially glycerin, which further verified enzyme-mediated biological reduction as the way for Cr(Ⅵ) removal. Experiments of Cr(Ⅵ) removal by permeable cells indicated that there was no significant difference in chromium reduction between the impermeable cells and the permeable cells. The cell envelop fraction had a Cr(Ⅵ) removal rate of 82.9%, apparently higher than cytoplasmic fraction (11.1%), indicating that the cell envelop was the main location for Cr(Ⅵ) reduction, which were further demonstrated by Scanning Electron Microscope and Transmission electron microscopy plus EDS analysis. Furthermore, analysis of X-ray photoelectron spectroscopy manifested that CO, C-OH and C-OC groups on the surfaces played major roles in correlation with chromium species.


Subject(s)
Bacillaceae/metabolism , Chromium/analysis , Soil Microbiology , Soil Pollutants/analysis , Soil/chemistry , Bacillaceae/isolation & purification , Bacillaceae/ultrastructure , Biodegradation, Environmental , Chromium/metabolism , Kinetics , Microscopy, Electron, Transmission , Soil Pollutants/metabolism
4.
Appl Environ Microbiol ; 80(21): 6656-63, 2014 Nov.
Article in English | MEDLINE | ID: mdl-25149519

ABSTRACT

Lysinibacillus sphaericus produces mosquitocidal binary toxins (Bin toxins) deposited within a balloon-like exosporium during sporulation. Unlike Bacillus cereus group strains, the exosporium of L. sphaericus is usually devoid of the hair-like nap, an external filamentous structure formed by a collagen-like protein, BclA. In this study, a new collagen-like exosporium protein encoded by Bsph_0411 (BclS) from L. sphaericus C3-41 was characterized. Thin-section electron microscopy revealed that deletion of bclS resulted in the loss of the filamentous structures that attach to the exosporium basal layer and spread through the interspace of spores. In vivo visualization of BclS-green fluorescent protein (GFP)/mCherry fusion proteins revealed a dynamic pattern of fluorescence that encased the spore from the mother cell-distal (MCD) pole of the forespore, and the BclS-GFP fusions were found to be located in the interspace of the spore, as confirmed by three-dimensional (3D) superresolution fluorescence microscopy. Further studies demonstrated that the bclS mutant spores were more sensitive to wet-heat treatment and germinated at a lower rate than wild-type spores and that these phenotypes were significantly restored in the bclS-complemented strain. These results suggested novel roles of collagen-like protein in exosporium assembly and spore germination, providing a hint for a further understanding of the genetic basis of the high level of persistence of Bin toxins in nature.


Subject(s)
Bacillaceae/metabolism , Bacterial Proteins/metabolism , Glycoproteins/metabolism , Macromolecular Substances/metabolism , Protein Multimerization , Spores, Bacterial/metabolism , Bacillaceae/genetics , Bacillaceae/ultrastructure , Bacterial Proteins/genetics , Bacterial Proteins/ultrastructure , Gene Deletion , Genetic Complementation Test , Glycoproteins/genetics , Glycoproteins/ultrastructure , Imaging, Three-Dimensional , Macromolecular Substances/ultrastructure , Microscopy, Electron , Microscopy, Fluorescence , Spores, Bacterial/genetics , Spores, Bacterial/ultrastructure
5.
J Microbiol ; 52(12): 1050-5, 2014 Dec.
Article in English | MEDLINE | ID: mdl-25079955

ABSTRACT

A Gram-stain-positive, polar flagella-containing, rod-shaped, obligate aerobic, endospore-forming bacterium, strain TK1655(T), was isolated from the traditional Korean food gochujang. The 16S rRNA sequence of strain TK1655(T) was a member of the genus Oceanobacillus similar to that of the type strain of Oceanobacillus oncorhynchi subsp. incaldanensis DSM 16557(T) (97.2%), O. oncorhynchi subsp. oncorhynchi JCM 12661(T) (97.1%), O. locisalsi KCTC 13253(T) (97.0%), and O. sojae JCM 15792(T) (96.9%). Strain TK1655(T) was oxidase and catalase positive. Colonies were circular, smooth, low convex, cream in colour, and measured about 0.5-1.0 mm in diameter. The range for growth was 20-40°C (optimal, 30°C), pH 6.0-10.0 (optimal, 7.0), and 2-16% (w/v) NaCl (optimal, 2%). Additionally, the cells contained meso-DAP, and the predominant isoprenoid quinone was MK-7. The complex polar lipids were consisted of diphosphatidylglycerol (DPG), phosphatidylglycerol (PG), phosphatidylcholine (PC). The major cellular fatty acid components were iso-C15:0, anteiso-C15:0, iso-C16:0, and anteiso-C17:0, and the DNA G+C content was 40.5%. DNA-DNA relatedness of our novel strain and reference strain O. locisalsi KCTC 13253(T), O. oncorhynchi subsp. incaldanensis DSM 16557(T), O. oncorhynchi subsp. oncorhynchi JCM 12661(T) was 45.7, 43.8, and 41.9%. From the results of phenotypic, chemotaxonomic, and phylogenetic analyses of strain TK1655(T), we propose the novel species Oceanobacillus gochujangensis sp. nov. The type strain is TK1655(T) (=KCCM 101304(T) =KCTC 33014(T) =CIP 110582(T) =NBRC 109637(T)).


Subject(s)
Bacillaceae/isolation & purification , Bacillaceae/physiology , Food Microbiology , Bacillaceae/classification , Bacillaceae/ultrastructure , Bacterial Typing Techniques , Base Composition , DNA, Bacterial/genetics , DNA, Ribosomal , Fatty Acids/analysis , Fermentation , Hydrogen-Ion Concentration , Lipids/analysis , Microscopy, Electron, Scanning , Phospholipids/analysis , Phylogeny , RNA, Ribosomal, 16S , Sequence Analysis, DNA , Sodium Chloride , Temperature
6.
Chemosphere ; 113: 175-81, 2014 Oct.
Article in English | MEDLINE | ID: mdl-25065807

ABSTRACT

Biochar, a massive byproduct of biomass pyrolysis during biofuel generation, is a potential P source for the mitigation of P depletion. However, the chemical and biological effect of the release of P from biochar is still unclear. In this study, two types of Lysinibacillus strains (Lysinibacillussphaericus D-8 and Lysinibacillus fusiformis A-5) were separated from a sediment and their P-solubilizing characteristics to biochar was first reported. Compared with the bacterial mixture W-1 obtained from a bioreactor, the introduction of A-5 and D-8 significantly improved P solubilization. The release of P from biochar by A-5 and D-8 reached 54% and 47%, respectively, which is comparable to that under rigorous chemical conditions. SEM images and XPS spectra demonstrated that the physicochemical properties of the biochar surface have changed in the process which may be caused by the activities of the microbes.


Subject(s)
Bacillaceae/metabolism , Biofuels , Bioreactors , Charcoal/chemistry , Oryza/chemistry , Phosphorus/analysis , Phosphorus/isolation & purification , Bacillaceae/classification , Bacillaceae/ultrastructure , Cluster Analysis , DNA Primers/genetics , DNA, Bacterial/genetics , Microscopy, Electron, Scanning , Models, Genetic , Phylogeny , Polymerase Chain Reaction , Porosity , RNA, Ribosomal, 16S/genetics , Solubility , Species Specificity
7.
Enzyme Microb Technol ; 57: 42-7, 2014 Apr 10.
Article in English | MEDLINE | ID: mdl-24629266

ABSTRACT

A bacterial strain able to glycosylate the plant natural product puerarin was isolated from local soil in Nanjing, China. It was identified as Lysinibacillus fusiformis, and deposited in China General Microbiological Culture Collection (CGMCC) under accession number 4913. Incubation of this strain with puerarin led to efficient production (91.6% conversation rate) of puerarin-7-O-fructoside, a derivative that possesses improved water solubility and antioxidant activity. A minor product puerarin-7-O-isomaltoside was also produced in small amounts, with a conversion rate of less than 1% after 48-h reaction. Both products were characterized based on the spectral data. Among the four tested sugars, sucrose (92.6% conversion rate of puerarin) is the best glycosyl donor for L. fusiformis CGMCC 4913, followed by maltose (39.8% conversion rate of puerarin), while glucose and fructose are not appropriate donors for this biotransformation process. L. fusiformis CGMCC 4913 can survive in the presence of 10% (v/v) organic solvents such as methanol, ethanol, toluene, cyclohexane, and dimethyl sulfoxide. The biotransformation efficiency of puerarin was increased 2-fold in the presence of 10% ethanol at 12 h compared to the transformation solution without ethanol. The optimum pH and substrate concentration are 8.0 and 4 g/L, respectively. Under the optimal conditions, the final conversion rate of puerarin reached 97.6±2.3% at 48 h in the presence of 10% ethanol. Therefore, L. fusiformis CGMCC 4913 represents a new and efficient biocatalyst for the biotransformation of puerarin.


Subject(s)
Bacillaceae/metabolism , Isoflavones/metabolism , Bacillaceae/isolation & purification , Bacillaceae/ultrastructure , Biotransformation , China , Ethanol , Fructose/analogs & derivatives , Fructose/chemistry , Fructose/metabolism , Glycosylation , Isoflavones/chemistry , Microscopy, Electron, Transmission , Organic Chemicals , Soil Microbiology , Solubility , Solvents , Vasodilator Agents/chemistry , Vasodilator Agents/metabolism
8.
Int J Mol Sci ; 12(8): 5294-303, 2011.
Article in English | MEDLINE | ID: mdl-21954359

ABSTRACT

The bacterial strain TD1 was isolated from Tao Dam hot spring in Thailand. Strain TD1 was Gram positive, rod-shaped, aerobic, motile, and endospore forming. The cell was 2.0-40 µm in length and about 0.4 µm in diameter. The optimum growth occurred at 55-60 °C and at pH 7-8. Strain TD1 was able to grow on medium containing up to 10% NaCl. The DNA G+C content was 38.9 mol%. The cellular fatty acid content was mainly C(16:0), which comprised 25.04% of the total amount of cellular fatty acid. 16S rDNA showed 99% identity to Aeribacillus pallidus DSM 3670(T). Bayesian tree analysis strongly supported the idea that strain TD1 is affiliated with genus Aeribacillus, as Aeribacillus pallidus strain TD1. Although the 16S rDNA of A. pallidus strain TD1 is similar to that of A. pallidus DSM 3670(T), some physiological properties and the cellular fatty acid profiles differ significantly. A. pallidus strain TD1 can produce extracellular pectate lyase, which has not been reported elsewhere for other bacterial strains in the genus Aeribacillus. A. pallidus strain TD1 may be a good candidate as a pectate lyase producer, which may have useful industrial applications.


Subject(s)
Bacillaceae/isolation & purification , Bacillaceae/physiology , Hot Springs/microbiology , Bacillaceae/classification , Bacillaceae/ultrastructure , Base Composition , Fatty Acids/metabolism , RNA, Ribosomal, 16S/genetics , Thailand
9.
J Hazard Mater ; 185(2-3): 682-8, 2011 Jan 30.
Article in English | MEDLINE | ID: mdl-20952126

ABSTRACT

Lysinibacillus fusiformis ZC1 isolated from chromium (Cr) contaminated wastewater of a metal electroplating factory displayed high chromate [Cr(VI)] resistance with a minimal inhibitory concentration (MIC) of 60mM in R2A medium. L. fusiformis ZC1 showed resistances to multiple metals (Cu, Ni, Co, Hg, Cd and Ag) and a metalloid (As). This bacterium exhibited an extremely rapid Cr(VI) reduction capability. It almost completely reduced 1mM K(2)CrO(4) in 12h. The Cr(VI) reduction ability of L. fusiformis ZC1 was enhanced by sodium acetate and NADH. By whole genome sequence analysis, strain ZC1 was found to contain large numbers of metal(loid) resistance genes. Specifically, a chrA gene encoding a putative chromate transporter conferring chromate resistance was identified. The chromate resistance was constitutive in both phenotypic and gene expression analyses. Furthermore, we found a yieF gene and several genes encoding reductases that were possibly involved in chromate reduction. Expression of adjacent putative chromate reduction related genes, nitR and yieF, was found to be constitutive. The large numbers of NADH-dependent chromate reductase genes may be responsible for the rapid chromate reduction in order to detoxify Cr(VI) and survive in the harsh wastewater environment.


Subject(s)
Bacillaceae/metabolism , Chromates/metabolism , Genome, Bacterial , Bacillaceae/genetics , Bacillaceae/ultrastructure , Base Sequence , Carbon/metabolism , DNA Primers , Drug Resistance, Microbial , Microbial Sensitivity Tests , Microscopy, Electron, Scanning , RNA, Ribosomal, 16S/genetics , Reverse Transcriptase Polymerase Chain Reaction
10.
J Microsc ; 235(1): 25-35, 2009 Jul.
Article in English | MEDLINE | ID: mdl-19566624

ABSTRACT

A method is described for the cryofixation of biological specimens for ultrastructural analysis and immunocytochemical detection studies. The method employs plunge freezing of specimens in a sealed capillary tube into a cryogen such as liquid propane or liquid nitrogen. Using this method a number of single-cell test specimens were well preserved. Also multicellular organisms, such as Caenorhabditis elegans, could be frozen adequately in low ionic strength media or even in water. The preservation of these unprotected specimens is comparable to that achieved with high-pressure freezing in the presence of cryoprotectant. The results are explained by the fact that cooling of water in a confined space below the melting point gives rise to pressure build-up, which may originate from the conversion of a fraction of the water content into low-density hexagonal ice and/or expansion of water during supercooling. Calculations indicate the pressure may be similar in magnitude to that applied in high-pressure freezing. Because the specimens are plunge cooled, suitable cryogens are not limited to liquid nitrogen. It is shown that a range of cryogens and cryogen temperatures can be used successfully. Because the pressure is generated inside the specimen holders as a result of the cooling rather than applied from an external source as in high-pressure freezing, the technique has been referred to as self-pressurized rapid freezing.


Subject(s)
Cryopreservation/methods , Hydrostatic Pressure , Microscopy, Electron/methods , Animals , Bacillaceae/ultrastructure , Caenorhabditis elegans/ultrastructure , Saccharomyces cerevisiae/ultrastructure
11.
Appl Spectrosc ; 62(11): 1226-32, 2008 Nov.
Article in English | MEDLINE | ID: mdl-19007464

ABSTRACT

Surface-enhanced Raman scattering (SERS) can provide molecular-level information about the molecules and molecular structures in the vicinity of nanostructured noble metal surfaces such as gold and silver. The three thermophilic bacteria Bacillus licheniformis, Geobacillus stearothermophilus, and Geobacillus pallidus, a Gram-negative bacterium E. coli, and a Gram-positive bacterium B. megaterium are comparatively characterized using SERS. The SERS spectra of thermophilic bacteria are similar, while they show significant differences compared to E. coli and B. megaterium. The findings indicate that a higher number of thiol residues and possible S-S bridges are present in the cell wall structure of thermophilic bacteria, providing their stability at elevated temperatures. Incubating the thermophilic bacteria with colloidal silver suspension at longer times improved the bacteria-silver nanoparticle interaction kinetics, while increased temperature does not have a pronounced effect on spectral features. A tentative assignment of the SERS bands was attempted for thermophilic bacteria. The results indicate that SERS can be a useful tool to study bacterial cell wall molecular differences.


Subject(s)
Bacillaceae/chemistry , Bacillus megaterium/chemistry , Escherichia coli/chemistry , Geobacillus stearothermophilus/chemistry , Spectrum Analysis, Raman/methods , Bacillaceae/ultrastructure , Bacillus megaterium/ultrastructure , Cell Wall/chemistry , Colloids , Escherichia coli/ultrastructure , Geobacillus stearothermophilus/ultrastructure , Gold/chemistry , Kinetics , Nanoparticles/chemistry , Nanoparticles/ultrastructure , Particle Size , Silver/chemistry , Spectrum Analysis, Raman/instrumentation , Surface Properties , Temperature
13.
Appl Biochem Biotechnol ; 142(2): 179-93, 2007 Aug.
Article in English | MEDLINE | ID: mdl-18025579

ABSTRACT

The purified alpha-amylase of Geobacillus thermoleovorans had a molecular mass of 26 kDa with a pI of 5.4, and it was optimally active at 100 degrees C and pH 8.0. The T 1/2 of alpha-amylase at 100 degrees C increased from 3.6 to 5.6 h in the presence of cholic acid. The activation energy and temperature quotient (Q 10) of the enzyme were 84.10 kJ/mol and 1.31, respectively. The activity of the enzyme was enhanced strongly by Co2+ and Fe2+; enhanced slightly by Ba2+, Mn2+, Ni2+, and Mg2+; inhibited strongly by Sn2+, Hg2+, and Pb2+, and inhibited slightly by EDTA, phenyl methyl sulfonyl fluoride, N-ethylmaleimide, and dithiothreitol. The enzyme activity was not affected by Ca2+ and ethylene glycol-bis (beta-amino ethyl ether)-N,N,N,N-tetra acetic acid. Among different additives and detergents, polyethylene glycol 8000 and Tween 20, 40, and 80 stabilized the enzyme activity, whereas Triton X-100, glycerol, glycine, dextrin, and sodium dodecyl sulfate inhibited to a varied extent. alpha-Amylase exhibited activity on several starch substrates and their derivatives. The K m and K cat values (soluble starch) were 1.10 mg/ml and 5.9 x 10(3)/min, respectively. The enzyme hydrolyzed raw starch of pearl millet (Pennisetum typhoides) efficiently.


Subject(s)
Bacillaceae/enzymology , Glycoside Hydrolases/chemistry , Glycoside Hydrolases/isolation & purification , Temperature , Bacillaceae/classification , Bacillaceae/ultrastructure , Enzyme Activation , Enzyme Stability , Glycoside Hydrolases/ultrastructure , Hydrogen-Ion Concentration , Hydrolysis , Kinetics , Metals/metabolism , Microscopy, Electron, Scanning , Pennisetum/metabolism , Starch/metabolism , Substrate Specificity
14.
J Biol Chem ; 280(21): 20292-9, 2005 May 27.
Article in English | MEDLINE | ID: mdl-15781455

ABSTRACT

Geobacillus tepidamans GS5-97(T) is a novel Gram-positive, moderately thermophilic bacterial species that is covered by a glycosylated surface layer (S-layer) protein. The isolated and purified S-layer glycoprotein SgtA was ultrastructurally and chemically investigated and showed several novel properties. By SDS-PAGE, SgtA was separated into four distinct bands in an apparent molecular mass range of 106-166 kDa. The three high molecular mass bands gave a positive periodic acid-Schiff staining reaction, whereas the 106-kDa band was nonglycosylated. Glycosylation of SgtA was investigated by means of chemical analyses, 600-MHz nuclear magnetic resonance spectroscopy, and electrospray ionization quadrupole time-of-fight mass spectrometry. Glycopeptides obtained after Pronase digestion revealed the glycan structure [-->2)-alpha-L-Rhap-(1-->3)-alpha-D-Fucp-(1-->](n=approximately 20), with D-fucopyranose having never been identified before as a constituent of S-layer glycans. The rhamnose residue at the nonreducing end of the terminal repeating unit of the glycan chain was di-substituted. For the first time, (R)-N-acetylmuramic acid, the key component of prokaryotic peptidoglycan, was found in an alpha-linkage to carbon 3 of the terminal rhamnose residue, serving as capping motif of an S-layer glycan. In addition, that rhamnose was substituted at position 2 with a beta-N-acetylglucosamine residue. The S-layer glycan chains were bound via the trisaccharide core -->2)-alpha-L-Rhap-(1-->3)-alpha-L-Rhap-(1-->3)-alpha-L-Rhap-(1--> to carbon 3 of beta-D-galactose, which was attached in O-glycosidic linkage to serine and threonine residues of SgtA of G. tepidamans GS5-97(T).


Subject(s)
Bacillaceae/chemistry , Fucose/analysis , Glycoproteins/chemistry , Membrane Glycoproteins/chemistry , Muramic Acids/chemistry , Polysaccharides/chemistry , Bacillaceae/ultrastructure , Carbohydrate Conformation , Carbohydrate Sequence , Electrophoresis, Polyacrylamide Gel , Fucose/chemistry , Galactose/chemistry , Glycoproteins/isolation & purification , Glycosylation , Magnetic Resonance Spectroscopy , Membrane Glycoproteins/isolation & purification , Microscopy, Electron , Molecular Sequence Data , Muramic Acids/analysis , Pronase/metabolism , Rhamnose/chemistry , Sequence Analysis , Serine/chemistry , Spectrometry, Mass, Electrospray Ionization , Threonine/chemistry
15.
Mol Pathol ; 56(1): 29-35, 2003 Feb.
Article in English | MEDLINE | ID: mdl-12560460

ABSTRACT

AIMS: To characterise a strain of Gram negative aerobic straight or slightly curved rods (HKU3) isolated from the blood culture of a 9 year old Chinese boy with neutropenic fever and pseudobacteraemia. METHODS: The isolate was phenotypically investigated by standard biochemical methods using conventional biochemical tests, scanning electron microscopy, and transmission electron microscopy. Genotypically, the 16S rRNA gene of the bacterium was amplified by the polymerase chain reaction (PCR) and sequenced. The sequence of the PCR product was compared with known 16S rRNA gene sequences in the Genbank by multiple sequence alignment. The G + C content was determined by thermal denaturation. A phylogenetic tree was constructed by the PileUp method. RESULTS: The cells of the bacterial strain were aerobic, sporulating, Gram negative straight or slight curved rods. The bacterium grew on horse blood agar as non-haemolytic, grey colonies of 1 mm in diameter after 24 hours of incubation at 37 degrees C in ambient air. No enhancement of growth was seen in 5% CO(2). It grew at 50 degrees C as pinpoint colonies after 72 hours of incubation, but did not grow at 65 degrees C or on MacConkey agar. It was non-motile. It produced catalase (weakly positive) and cytochrome oxidase. It reduced nitrate, produced beta galactosidase, hydrolysed esculin, and utilised sodium acetate. A scanning electron micrograph of the bacterium showed straight or slightly curved rods. A transmission electron micrograph of the cell wall of the bacterium revealed multiple electron dense layers, including the outer membrane, middle murein layer, and inner cytoplasmic membrane, compatible with its Gram smear appearance. 16S rRNA gene sequencing showed that there were 7.7%, 8.0%, 8.2%, and 8.6% differences between the 16S rRNA gene sequence of the bacterium and those of Paenibacillus macerans, Paenibacillus borealis, Bacillus ehimensis, and Paenibacillus amylolyticus, respectively. The mean (SD) G + C content of the bacterium was 47.6 (2.1) mol%. Phylogenetically, it belongs to the genus paenibacillus (previously called group 3 bacillus). CONCLUSIONS: A bacterium that exhibited phenotypic and genotypic characteristics that are very different from closely related members of paenibacillus was the cause of pseudobacteraemia in a patient with neutropenic fever. A new species, Paenibacillus hongkongensis sp. nov. is proposed, for which HKU3 is the type strain.


Subject(s)
Bacillaceae/isolation & purification , Bacteremia/microbiology , Fever/microbiology , Neutropenia/microbiology , Bacillaceae/genetics , Bacillaceae/ultrastructure , Base Sequence , Child , DNA, Bacterial/analysis , Electrophoresis, Agar Gel , Humans , Male , Microscopy, Electron , Microscopy, Electron, Scanning , Phenotype , Phylogeny , Polymerase Chain Reaction , Prospective Studies , RNA, Ribosomal, 16S/genetics
16.
Arch Microbiol ; 177(4): 339-44, 2002 Apr.
Article in English | MEDLINE | ID: mdl-11889488

ABSTRACT

A novel, extremely thermophilic bacterium was isolated from a shallow marine hydrothermal vent at depth of 22 m in Tachibana Bay, Nagasaki Prefecture, Japan. Cells were gram-negative, non-spore-forming, motile rods. Growth was observed between 52 and 78 degrees C (optimum 70 degrees C), pH 5 and 8 (optimum pH 7) and 0-4.5% NaCl (optimum 1.0%). The isolate was a strictly aerobic heterotroph utilizing yeast extract and trypticase peptone. The G+C content of the genomic DNA is 69 mol%. Analysis of 16S rDNA sequences indicated that strain Ts1a is closely related to Thermaerobacter marianensis. The differences in physiology and DNA-DNA similarity between strain Ts1a and T. marianensis showed that strain Ts1a represents a new species of Thermaerobacter. The type strain of T. nagasakiensis is strain Ts1a (=JCM11223, DSM 14512).


Subject(s)
Bacillaceae/growth & development , Bacillaceae/isolation & purification , Bacteria, Aerobic/growth & development , Bacteria, Aerobic/isolation & purification , Bacillaceae/genetics , Bacillaceae/ultrastructure , Bacteria, Aerobic/genetics , Bacteria, Aerobic/ultrastructure , DNA, Bacterial/analysis , Hot Temperature , Phylogeny , Seawater , Sequence Analysis, DNA , Water Microbiology
17.
Int J Syst Evol Microbiol ; 52(Pt 1): 131-139, 2002 Jan.
Article in English | MEDLINE | ID: mdl-11837295

ABSTRACT

Bacteria belonging to the genus Paenibacillus were isolated by enrichment from petroleum-hydrocarbon-contaminated sediment and salt marsh rhizosphere using either naphthalene or phenanthrene as the sole carbon source, and were characterized using phenotypic, morphological and molecular techniques. The isolates were grouped by their colony morphologies and polyaromatic hydrocarbon-degradation patterns. Phenanthrene-degrading isolates produced mottled colonies on solid media and were identified as P. validus by fatty acid methyl ester and 16S rRNA gene sequence analyses. In contrast, the naphthalene-degrading isolates with mucoid colony morphology were distantly related to Paenibacillus validus, according to fatty acid methyl ester and 16S rRNA gene sequence analyses. The predominant fatty acids of the mucoid isolates were 15:0 anteiso, 16:1omega11c, 16:0 and 17:0 anteiso, constituting, on average, 50.5, 12.0, 11.2 and 6.5% of the total, respectively. The G+C contents of their DNA ranged from 47 to 52 mol%. The 16S rDNA sequence analysis revealed the highest (< or = 94%) similarity to P. validus. In addition, phylogenetic analyses based on 16S rDNA sequences showed that the mucoid isolates formed a distinct cluster within Paenibacillus. DNA-DNA hybridization experiments showed only a 6% DNA similarity between the type strain of P. validus and mucoid strain PR-N1. On the basis of the morphological, phenotypic and molecular data, the naphthalene-degrading isolates merit classification as a new Paenibacillus species, for which the name Paenibacillus naphthalenovorans sp. nov. is proposed, with PR-N1T (= ATCC BAA-206T = DSM 14203T) as the type strain.


Subject(s)
Bacillaceae/classification , Fresh Water/microbiology , Geologic Sediments/microbiology , Plant Roots/microbiology , Polycyclic Aromatic Hydrocarbons/metabolism , Bacillaceae/growth & development , Bacillaceae/metabolism , Bacillaceae/ultrastructure , Biodegradation, Environmental , DNA, Ribosomal/analysis , Environmental Pollutants , Fatty Acids/analysis , Naphthalenes/metabolism , Nucleic Acid Hybridization , Phenanthrenes/metabolism , Phenotype , Phylogeny , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA
18.
Antibiot Khimioter ; 46(3): 12-5, 2001.
Article in Russian | MEDLINE | ID: mdl-11548275

ABSTRACT

The role of transport activity of Acholeplasma laidlawii plasmatic membrane in the development of resistance to ciprofloxacin and tetracycline was investigated. It was shown that one of the important steps of resistance development in acholeplasms is a complex of adaptation metabolic reactions providing limited antibiotic accumulation by the cells. In the case of ciprofloxacin resistance metabolism changes concerning transport systems took place before mutations in target genes. Development of tetracycline resistance of mollecutes after incubation in the medium with enhancing antibiotic concentrations and not connected with the presence of tet(M) determinant was demonstrated for the first time.


Subject(s)
Anti-Infective Agents/pharmacology , Bacillaceae/drug effects , Ciprofloxacin/pharmacology , Tetracycline/pharmacology , Tetracyclines/pharmacology , Bacillaceae/genetics , Bacillaceae/ultrastructure , Biological Transport , Cell Membrane/metabolism , Drug Resistance, Microbial , Mutation
19.
Biosci Biotechnol Biochem ; 65(7): 1474-81, 2001 Jul.
Article in English | MEDLINE | ID: mdl-11515528

ABSTRACT

A strict anaerobic bacterium, strain Y51, was isolated from soil contaminated with tetrachloroethene (PCE). Strain Y51 is capable of very efficiently dehalogenating PCE via trichloroethene (TCE) to cis-1,2-dichloroethene (cis-1,2-DCE) at concentrations as high as 960 microM and as low as 0.6 microM. Strain Y51 was gram-negative, motile with some lateral flagella, and curved rod-shaped. On the basis of the 16S rDNA sequence, the organism was identified to be a species within the genus Desulfitobacterium. Strain Y51 also had dehalogenation activities toward polychloroethanes such as hexa-, penta-, and tetrachloroethanes, from which dichloroethenes were produced as the final products. The cell extracts mediated the dehalogenation of PCE with reduced methyl viologen as an electron carrier at the specific rate of 5.0 nmol min(-1) mg cell protein(-1) (pH 7.2, 37 degrees C). Dehalogenation was highly susceptible to air oxidation, and to potential alternative electron acceptors such as nitrite or sulfite.


Subject(s)
Bacillaceae/isolation & purification , Bacillaceae/metabolism , Ethane/analogs & derivatives , Hydrocarbons, Chlorinated/metabolism , Tetrachloroethylene/metabolism , Bacillaceae/genetics , Bacillaceae/ultrastructure , Base Sequence , DNA, Bacterial/genetics , DNA, Ribosomal/genetics , Ethane/metabolism , Microscopy, Electron , Oxidoreductases/antagonists & inhibitors , Oxidoreductases/metabolism , Soil Microbiology
20.
Can J Microbiol ; 47(3): 264-8, 2001 Mar.
Article in English | MEDLINE | ID: mdl-11315117

ABSTRACT

Previous studies on Tuber borchii fruit bodies in early maturation stages suggested a role of bacteria in sporocarp structural modifications. In order to verify this hypothesis, in the present study we investigated by means of microbial and ultrastructural approaches, the bacterial population of T. borchii sporocarps from intermediate maturation phases to advanced decomposition stages, paying particular attention to chitinolytic and cellulolytic bacteria and to their relationships with ascii and ascospores. We found that Pseudomonas fluorescens and spore-forming Bacillaceae, both able to degrade cellulose and chitin, are present inside the sporocarps in all maturation stages investigated. Moreover, rod-shaped bacteria seem able to erode ascus walls and colonize the interior of ascii containing mature spores. These results suggest a possible role of these bacteria in the process of ascus opening. Moreover, the presence of P. fluorescens and Bacillaceae on isolated mature spores after decontamination suggests an intimate association between these bacteria and the ascospores.


Subject(s)
Ascomycota/growth & development , Bacillaceae , Bacillaceae/isolation & purification , Pseudomonas fluorescens/isolation & purification , Symbiosis , Ascomycota/ultrastructure , Bacillaceae/ultrastructure , Pseudomonas fluorescens/ultrastructure
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