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1.
Curr Microbiol ; 81(7): 207, 2024 Jun 04.
Article in English | MEDLINE | ID: mdl-38831110

ABSTRACT

The current study aimed to evaluate the plant growth-promoting (PGP) potential of endophytic strain Bacillus subtilis KU21 isolated from the roots of Rosmarinus officinalis. The strain exhibited multiple traits of plant growth promotion viz., phosphate (P) solubilization, nitrogen fixation, indole-3-acetic acid (IAA), siderophore, hydrogen cyanide (HCN), lytic enzymes production, and 1-aminocyclopropane-1-carboxylate (ACC) deaminase activity. The isolate also exhibited antagonistic activity against phytopathogenic fungi, i.e., Fusarium oxysporum, Fusarium graminiarum, and Rhizoctonia solani. The P-solubilization activity of B. subtilis KU21 was further elucidated via detection of glucose dehydrogenase (gdh) gene involved in the production of gluconic acid which is responsible for P-solubilization. Further, B. subtilis KU21 was evaluated for in vivo growth promotion studies of tomato (test crop) under net house conditions. A remarkable increase in seed germination, plant growth parameters, nutrient acquisition, and soil quality parameters (NPK) was observed in B. subtilis KU21-treated plants over untreated control. Hence, the proposed module could be recommended for sustainable tomato production in the Northwest Himalayan region without compromising soil health and fertility.


Subject(s)
Bacillus subtilis , Endophytes , Plant Roots , Rosmarinus , Bacillus subtilis/genetics , Bacillus subtilis/growth & development , Bacillus subtilis/isolation & purification , Bacillus subtilis/metabolism , Endophytes/isolation & purification , Endophytes/metabolism , Endophytes/genetics , Endophytes/classification , Rosmarinus/chemistry , Rosmarinus/microbiology , Plant Roots/microbiology , Plant Roots/growth & development , Solanum lycopersicum/microbiology , Solanum lycopersicum/growth & development , Fusarium/growth & development , Fusarium/genetics , Fusarium/metabolism , Soil Microbiology , Plant Development , Germination , Indoleacetic Acids/metabolism , Rhizoctonia/growth & development , Rhizoctonia/drug effects , Nitrogen Fixation , Phosphates/metabolism
2.
Protein Expr Purif ; 220: 106490, 2024 Aug.
Article in English | MEDLINE | ID: mdl-38697589

ABSTRACT

The production of fermentable sugars from lignocellulosic biomass is achieved by the synergistic action of a group of enzymes called cellulases. Cellulose is a long chain of chemically linked glucoses by ß-1,4 bonds. The enzyme ß-1,4-endoglucanase is the first cellulase involved in the degradation, breaking the bond of the amorphous regions. A ß-1,4-endoglucanase enzyme with high activity was obtained from a Bacillus subtilis strain isolated from wastewater of a pulp and paper mill. Sequencing and bioinformatic analysis showed that the gene amplified by PCR consisting of 1407 nucleotides and coding for a ß-1,4-endoglucanase enzyme of approximately 55 kDa. The open reading frame (ORF) encoding the mature endoglucanase (eglS) was successfully inserted in a modified cloning plasmid (pITD03) and into the pYD1 plasmid used for its expression in yeast. Carboxymethylcellulose (CMC) plate assay, SDS-PAGE, and zymogram confirmed the production and secretion by the transformed E. coli BL21-SI strain of a 39 kDa ß-1,4-endoglucanase consistent with the catalytic domain without the cellulose-binding module (CBM). The results showed that the truncated ß-1,4-endoglucanase had higher activity and stability.


Subject(s)
Bacillus subtilis , Cellulase , Paper , Recombinant Proteins , Wastewater , Bacillus subtilis/genetics , Bacillus subtilis/enzymology , Bacillus subtilis/isolation & purification , Wastewater/microbiology , Wastewater/chemistry , Cellulase/genetics , Cellulase/chemistry , Cellulase/biosynthesis , Cellulase/isolation & purification , Cellulase/metabolism , Recombinant Proteins/genetics , Recombinant Proteins/chemistry , Recombinant Proteins/isolation & purification , Recombinant Proteins/metabolism , Recombinant Proteins/biosynthesis , Bacterial Proteins/genetics , Bacterial Proteins/chemistry , Bacterial Proteins/isolation & purification , Bacterial Proteins/biosynthesis , Bacterial Proteins/metabolism , Escherichia coli/genetics , Escherichia coli/metabolism , Cloning, Molecular , Gene Expression
3.
Sci Rep ; 12(1): 1383, 2022 01 26.
Article in English | MEDLINE | ID: mdl-35082324

ABSTRACT

Bacillus subtilis, a probiotic, has been applied in the medical, food, and feed industries among others. However, the mechanisms of its benefits to hosts are not yet fully understood. Here the characterization and bioactivities of an extracellular polymeric substance (EPS) from Bacillus subtilis were investigated to reveal its partial mechanisms and provide the theoretical basics for further development and utilization of Bacillus subtilis. In this study, the novel strain Bacillus subtilis xztubd1 (GenBank: MG458322.1) was isolated from a housefly's body, identified according to phenotypical and genotypical analyses, and found to produce large amounts of an EPS. Through ultraviolet spectroscopy and Fourier transform infrared spectroscopy (FTIR spectroscopy), the EPS was found to contain a variety of chemical functional groups, such as O-H groups, C=C, C=O, CH3, C-O-H and C-O-C bonds, and alpha-type pyranose. Furthermore, the in vitro antioxidant activity of the EPS on DPPH radicals at a concentration of 90 µg/ml was 62%; on the superoxide radical at a concentration of 90 µg/ml, this value was 75%; and on hydroxyl radicals at a concentration of 90 µg/ml, the activity was 54%. EPS also enhanced significantly phagocytosis, lysozyme activity in macrophages, IL-2 content in mice and inhibited dramatically the growth of HeLa cells. These results showed that the EPS with reductive groups have the strong capacity to scavenge reactive oxygen species (ROS), reinforce the immune system and inhibit the growth of cancer cell, which helps theirs hosts defence against many diseases, including inflammation and cancer. The EPS from Bacillus subtilis has the potential to be an anticancer and anti-inflammatory drug candidate in the pharmaceutical industries, which provide scientific evidence for the development and utilization of probiotic-derived medicines.


Subject(s)
Anti-Inflammatory Agents/administration & dosage , Antineoplastic Agents/administration & dosage , Bacillus subtilis/isolation & purification , Bacillus subtilis/metabolism , Houseflies/microbiology , Polysaccharides, Bacterial/administration & dosage , Probiotics/administration & dosage , Animals , Animals, Outbred Strains , Anti-Inflammatory Agents/chemistry , Anti-Inflammatory Agents/metabolism , Antineoplastic Agents/chemistry , Antineoplastic Agents/metabolism , Antioxidants/administration & dosage , Antioxidants/chemistry , Antioxidants/metabolism , Cell Proliferation/drug effects , Extracellular Polymeric Substance Matrix/chemistry , Extracellular Polymeric Substance Matrix/metabolism , HeLa Cells , Humans , Interleukin-2/metabolism , Macrophages/drug effects , Macrophages/enzymology , Male , Mice , Muramidase/metabolism , Phagocytosis/drug effects , Polysaccharides, Bacterial/biosynthesis , Probiotics/metabolism , Signal Transduction/drug effects , Spectroscopy, Fourier Transform Infrared/methods
4.
Electron. j. biotechnol ; 53: 71-79, Sep.2021. ilus, tab, graf
Article in English | LILACS | ID: biblio-1451302

ABSTRACT

BACKGROUND The extracellular expression of enzymes in a secretion host such as Bacillus subtilis is a useful strategy in reducing the cost of downstream processing of industrial enzymes. Here, we present the first report of the successful extracellular expression in Bacillus subtilis WB800 of Geobacillus stearothermophilus lipase (T1.2RQ), a novel industriallydesirable thermostable lipolytic enzyme which has an excellent hydrolytic and transesterification activity. Signal peptides of a-amylase, extracellular protease, and lipase A, as well as two different promoters, were used in the secretion and expression of lipase T1.2RQ. RESULTS Lipase activity assay using p-nitrophenyl laurate showed that all three signal peptides directed the secretion of lipase T1.2RQ into the extracellular medium. The signal peptide of lipase A, resulted in the highest extracellular yield of 5.6 U/ml, which corresponds to a 6-fold increase over the parent Bacillus subtilis WB800 strain. SDS-PAGE and zymogram analysis confirmed that lipase T1.2RQ was correctly processed and secreted in its original size of 44 kDa. A comparison of the expression levels of lipase T1.2RQ in rich medium and minimal media showed that the enzyme was better expressed in rich media, with up to an 8-fold higher yield over minimal media. An attempt to further increase the lipase expression level by promoter optimization showed that, contrary to expectation, the optimized promoter exhibited similar expression levels as the original one, suggesting the need for the optimization of downstream factors. CONCLUSIONS The successful extracellular secretion of lipase T1.2RQ in Bacillus subtilis represents a remarkable feat in the industrial-scale production of this enzyme


Subject(s)
Geobacillus stearothermophilus/metabolism , Geobacillus stearothermophilus/chemistry , Bacillus subtilis/metabolism , Bacillus subtilis/chemistry , Geobacillus stearothermophilus/isolation & purification , Geobacillus stearothermophilus/genetics , Bacillus subtilis/isolation & purification , Bacillus subtilis/genetics , Lipase/chemistry
5.
PLoS One ; 16(7): e0253595, 2021.
Article in English | MEDLINE | ID: mdl-34214092

ABSTRACT

Slightly acidic electrolyzed water (SAEW) was developed by Japanese companies over 20 years ago. SAEW has the advantage of potent sterilizing action while being relatively safe. This study evaluated the potential application of SAEW in spatial disinfection. Prior to experiments involving spatial spraying, the ability of SAEW to remove seven type of microorganisms that cause food poisoning was studied in vitro. Results indicated that free chlorine in SAEW, even at a low concentration (30 mg/L), was able to remove Cladosporium cladosporioides, a typical airborne fungus that degrades food, and spores such as Bacillus subtilis, a hardy bacterium. In an experiment involving spatial spraying, 3.43 log10 CFU/100 L of Staphylococcus epidermidis was sprayed in a room-sized space; the same space was then sprayed with SAEW. The number of settling microbes was measured and the sterilizing ability of SAEW was assessed. Results indicated that the concentration of S. epidermidis in the space was completely removed after 20 minutes of SAEW spraying. The above findings indicate that SAEW may be used to remove airborne microorganisms via spatial spraying.


Subject(s)
Disinfectants/chemistry , Disinfection/methods , Food Microbiology/methods , Foodborne Diseases/prevention & control , Water/chemistry , Air Microbiology , Bacillus subtilis/isolation & purification , Cladosporium/isolation & purification , Electrolysis , Foodborne Diseases/microbiology , Hydrogen-Ion Concentration , Staphylococcus epidermidis/isolation & purification
6.
Int J Biol Macromol ; 186: 800-810, 2021 Sep 01.
Article in English | MEDLINE | ID: mdl-34284053

ABSTRACT

Bacillus subtilis CW14, isolated from fresh elk droppings in Beijing Zoo, is a Gram-positive, conferred Generally Recognized as Safe (GRAS) bacterium with the capacity of ochratoxin A (OTA) detoxification. The genome sequence of the CW14 strain showed a size of 4,287,522 bp with 44.06% GC content. It was predicted many putative enzymes involved in degrading mycotoxin by analyzing the signal peptides and the transmembrane regions. Nine extracellular enzymes were predicted relating to OTA detoxification, including four D-Ala-D-Ala carboxypeptidases, two hydrolases, two amidases, and one lactamase. Indeed, two of the carboxypeptidase genes dacA and dacB, expressed in Escherichia coli, were verified contributing to OTA detoxification. DacA and OTA were mixed incubated for 24 h, and the degradation rate reached 71.3%. After purification, the concentration of recombinant DacA protein was 0.5 mg/mL. Bacillus subtilis CW14 and its carboxypeptidases may be used as OTA detoxification agents in food and feed industry production.


Subject(s)
Bacillus subtilis/genetics , Bacterial Proteins/genetics , Carboxypeptidases/genetics , Genome, Bacterial , Genomics , Ochratoxins/metabolism , Animals , Bacillus subtilis/enzymology , Bacillus subtilis/isolation & purification , Bacterial Proteins/metabolism , Carboxypeptidases/metabolism , Deer/microbiology , Feces/microbiology , Inactivation, Metabolic , Phylogeny , Substrate Specificity
7.
Sci Rep ; 11(1): 9754, 2021 05 07.
Article in English | MEDLINE | ID: mdl-33963217

ABSTRACT

Endoglucanase producing bacteria were isolated from Egyptian soils and the most active bacterial strain was identified as Bacillus subtilis strain Fatma/1. Plackett-Burman statistical design was carried out to assess the effect of seven process variables on endoglucanase production. Carboxymethyl cellulose (CMC), yeast extract and peptone were the most significant variables that enhanced the endoglucanase production and thus were selected for further optimization using face-centered central composite design. The highest yield of endoglucanase (32.37 U/mL) was obtained in run no. 9, using 18 g/L CMC, 8 g/L peptone, 7 g/L yeast extract and 0.1 g/L FeSO4.7H2O. The optimized medium showed about eightfold increase in endoglucanase production compared to the unoptimized medium. The produced crude enzyme was further purified by ammonium sulfate precipitation, then DEAE-Sepharose CL6B column. The purified enzyme was shown to have a molecular weight of 37 kDa. The enzyme showed maximum activity at pH 8.0, temperature of 50 °C, incubation time of 60 min. The half-life time (T1/2) was 139.53 min at 50 °C, while being 82.67 min at 60 °C. Endoglucanase at concentration of 12 U/mL effectively removed 84.61% of biofilm matrix of Pseudomonas aeruginosa with marked reduction in carbohydrate content of the biofilm from 63.4 to 7.9 µg.


Subject(s)
Bacillus subtilis , Bacterial Proteins , Biofilms/drug effects , Cellulase , Pseudomonas aeruginosa/physiology , Bacillus subtilis/enzymology , Bacillus subtilis/isolation & purification , Bacterial Proteins/chemistry , Bacterial Proteins/isolation & purification , Bacterial Proteins/pharmacology , Biofilms/growth & development , Cellulase/chemistry , Cellulase/isolation & purification , Cellulase/pharmacology
8.
Molecules ; 26(7)2021 Mar 26.
Article in English | MEDLINE | ID: mdl-33810551

ABSTRACT

Bacillus subtilis fmb60, which has broad-spectrum antimicrobial activities, was isolated from plant straw compost. A hybrid NRPS/PKS cluster was screened from the genome. Sixteen secondary metabolites produced by the gene cluster were isolated and identified using LC-HRMS and NMR. Three lipoamides D-F (1-3) and two amicoumacin derivatives, amicoumacins D, E (4, 5), were identified, and are reported here for the first time. Lipoamides D-F exhibited strong antibacterial activities against harmful foodborne bacteria, with the MIC ranging from 6.25 to 25 µg/mL. Amicoumacin E scavenged 38.8% of ABTS+ radicals at 1 mg/mL. Direct cloning and heterologous expression of the NRPS/PKS and ace gene cluster identified its importance for the biosynthesis of amicoumacins. This study demonstrated that there is a high potential for biocontrol utilization of B. subtilis fmb60, and genome mining for clusters of secondary metabolites of B. subtilis fmb60 has revealed a greater biosynthetic potential for the production of novel natural products than previously anticipated.


Subject(s)
Anti-Bacterial Agents , Antioxidants , Bacillus subtilis , Biological Products , Coumarins , Thioctic Acid/analogs & derivatives , Anti-Bacterial Agents/chemistry , Anti-Bacterial Agents/metabolism , Antioxidants/chemistry , Antioxidants/metabolism , Bacillus subtilis/genetics , Bacillus subtilis/isolation & purification , Bacillus subtilis/metabolism , Biological Products/chemistry , Biological Products/metabolism , Composting , Coumarins/chemistry , Coumarins/metabolism , Genome, Bacterial , Multigene Family , Secondary Metabolism , Thioctic Acid/chemistry , Thioctic Acid/metabolism
9.
Pak J Biol Sci ; 24(2): 227-234, 2021 Jan.
Article in English | MEDLINE | ID: mdl-33683052

ABSTRACT

BACKGROUND AND OBJECTIVE: Chitosan can be produced through the enzymatic process catalyzed by chitin deacetylase which can be produced by bacteria. The biotransformation of chitin to chitosan by bacteria is interesting because the process is economical and environmentally friendly. This study described the potential of sponge-associated bacterium capability in degrading chitin and forming chitosan. MATERIALS AND METHODS: The bacteria were isolated from sponge Cribrochalina sp. at Manado Bay, Indonesia. In the screening of the chitinase activity of bacteria, chitin media was used. Meanwhile, the transformation of chitin to chitosan was tested by using Chitinase Degrading Activity media. Molecular identification of bacteria was based on 16S rRNA gene sequences. RESULTS: The results showed that the SS1, SS2, SS3, SS4 and SS5 bacterial isolates could degrade chitin based on chitinolytic indexes. These five bacteria could also form chitosan exhibited through the presence of chitosan in the form of precipitation in the fermented broth of bacteria. SS1 had the highest chitinase activity based on the chitinolytic index identified as Bacillus subtilis (100% identity), hence it is called B. subtilis strain SS1. The partial rRNA gene sequences data were deposited at GenBank under accession number MN999892. CONCLUSION: The bacteria strain isolated from Cribrochalina sp. can be utilized in degrading chitin and form chitosan which could be a promising candidate for an economical and eco-friendly process of chitosan.


Subject(s)
Amidohydrolases/metabolism , Bacillus subtilis/enzymology , Bacterial Proteins/metabolism , Chitin/metabolism , Chitosan/metabolism , Porifera/microbiology , Animals , Bacillus subtilis/genetics , Bacillus subtilis/isolation & purification , Indonesia , Phylogeny , Ribotyping , Substrate Specificity
10.
Microbiol Res ; 247: 126733, 2021 Jun.
Article in English | MEDLINE | ID: mdl-33676313

ABSTRACT

Since sugarcane is a ratoon crop, genome analysis of plant growth-promoting bacteria that exist in its soil rhizosphere, can provide opportunity to better understand their characteristics and use of such bacteria in turn, may especially improve perennial crop productivity. In the present study, genome of two bacterial strains, one each of B. megaterium (BM89) and B. subtilis (BS87), isolated and reported earlier (Chandra et al., 2018), were sequenced and characterized. Though both strains have demonstrated plant growth promoting properties and enhanced in-vitro plant growth responses, functional annotation and analysis of genes indicated superiority of BS87 as it possessed more plant growth promotion attributable genes over BM89. Apart from some common genes, trehalose metabolism, glycine betaine production, peroxidases, super oxide dismutase, cold shock proteins and phenazine production associated genes were selectively identified in BS87 genome indicating better plant growth performances and survival potential under harsh environmental conditions. Genes for chitinase, d-cysteine desulfhydrase and γ-aminobutyric acid (GABA), as found in BM89, propose its selective utilization in defense and bio-control measures. Concomitant with better settlings' growth, scanning electron micrographs indicated these isolated and characterized bacteria exhibiting healthy colonization within root of sugarcane crop. Kegg pathways' assignment also revealed added pathways namely carbohydrate and amino acid metabolism attached to B. subtilis strain BS87, a preferable candidate for bio-fertilizer and its utilization to promote growth of both plant and ratoon crops of sugarcane usually experiencing harsh environmental conditions.


Subject(s)
Bacillus megaterium/genetics , Bacillus subtilis/genetics , Plant Development , Rhizosphere , Saccharum/growth & development , Saccharum/microbiology , Whole Genome Sequencing , Bacillus megaterium/classification , Bacillus megaterium/isolation & purification , Bacillus megaterium/physiology , Bacillus subtilis/classification , Bacillus subtilis/isolation & purification , Bacillus subtilis/physiology , Cold Shock Proteins and Peptides , Crop Production , Crops, Agricultural/microbiology , Fertilizers , Genome, Bacterial , Phylogeny , Soil , Soil Microbiology
11.
Arch Microbiol ; 203(5): 1995-2006, 2021 Jul.
Article in English | MEDLINE | ID: mdl-33544157

ABSTRACT

A bacteriocin from Bacillus subtilis (MK733983) originated from ethnomedicinal plant was purified using Preparative RP-HPLC. The HPLC fraction eluted with 65% acetonitrile showed the highest antimicrobial activity with Mycobacterium smegmatis as an indicator. Its specific activity and purification fold increased by 70.5% and 44%, respectively, compared to the crude bacteriocin. The bacteriocin showed stability over a wide range of pH (3.0-8.0) and preservation (- 20 °C and 4 °C), also thermal stability up to 80 °C for 20 min. Its proteinaceous nature was confirmed with complete loss of activity on its treatment with Trypsin, Proteinase K, and α-Chymotrypsin. Nevertheless, the bacteriocin retained up to 45% activity with Papainase treatment and was unaffected by salivary Amylase. It maintained ~ 95% activity on UV exposure up to 3 h and its activity was augmented by ethyl alcohol and metal ions like Fe2+ and Mn2+. Most of the common organic solvents, general surfactants, preservatives, and detergents like Sulfobetaine-14, Deoxy-cholic-acid did not affect the bacteriocin's action. Its molecular weight was estimated to be 3.4KDa by LC-ESI-MS/MS analysis. The bacteriocin is non-hemolytic and exhibited a broad inhibition spectrum with standard strains of Staphylococcus aureus, Pseudomonas aeruginosa, Klebsiella pneumoniae, Escherichia coli and Chromobacterium violaceum with MICs ranging 0.225 ± 0.02-0.55 ± 0.05 mg/mL. Scanning Electron Microscopy showed cell annihilation with pores in cell membranes of S. aureus and P. aeruginosa treated with the bacteriocin, implicating bactericidal mode of action. These promising results suggest that the bacteriocin is significant and has wide-ranging application prospects.


Subject(s)
Anti-Bacterial Agents/pharmacology , Bacillus subtilis/metabolism , Bacteriocins/pharmacology , Plants, Medicinal/microbiology , Anti-Bacterial Agents/chemistry , Anti-Bacterial Agents/isolation & purification , Anti-Bacterial Agents/metabolism , Bacillus subtilis/isolation & purification , Bacteria/classification , Bacteria/drug effects , Bacteriocins/chemistry , Bacteriocins/isolation & purification , Bacteriocins/metabolism , Hydrogen-Ion Concentration , Microbial Sensitivity Tests , Molecular Weight , Tandem Mass Spectrometry , Temperature
12.
Dev Comp Immunol ; 119: 104037, 2021 06.
Article in English | MEDLINE | ID: mdl-33545212

ABSTRACT

Bacillus subtilis subsp. subtilis G7 was isolated from a deep-sea hydrothermal vent and is pathogenic to pathogenic to fish (Japanese flounder) and mice. G7 is able to survive in host sera and phagocytes. In this study, we investigated the underlying mechanism of G7 serum resistance. We found that (i) the remaining complement activity was very low in G7-incubated flounder serum but high in G7-incubated mouse serum; (ii) cleaved C3 and C5 components were detected on flounder serum-incubated G7 but not on mouse serum-incubated G7; (iii) abundant uncleaved C5 was localized in G7-incubated mouse, but not flounder, serum; (iv) G7-incubated flounder, but not mouse, serum exhibited strong chemotactic activity; (v) pre-treatment with low-dose lysozyme abolished the serum resistance of G7. Hence, G7 activates flounder complement but is protected from complement-mediated destruction by its cell wall structure, while G7 prevents the activation of mouse complement. These results indicate that G7 employs different mechanisms to avoid the complement killing of different hosts.


Subject(s)
Bacillaceae Infections/immunology , Bacillus subtilis/immunology , Complement System Proteins/immunology , Fish Diseases/immunology , Flounder/immunology , Immune Evasion/immunology , Animals , Bacillaceae Infections/blood , Bacillaceae Infections/microbiology , Bacillus subtilis/isolation & purification , Bacillus subtilis/pathogenicity , Blotting, Western , Enzyme-Linked Immunosorbent Assay , Fish Diseases/microbiology , Flounder/blood , Flounder/microbiology , Host-Pathogen Interactions/immunology , Hydrothermal Vents/microbiology , Mice , Mice, Inbred BALB C , RAW 264.7 Cells , Virulence/immunology
13.
Int J Food Microbiol ; 343: 109088, 2021 Apr 02.
Article in English | MEDLINE | ID: mdl-33621831

ABSTRACT

Bacterial spores are a major challenge in industrial decontamination processes owing to their extreme resistance. High-pressure (HP) of 150 MPa at 37 °C can trigger the germination of spores, making them lose their extreme resistance. Once their resistance is lost, germinated spores can easily be inactivated by a mild decontamination step. The implementation of this gentle germination-inactivation strategy is hindered by the presence of a subpopulation of so-called high-pressure superdormant (HPSD) spores, which resist germination or germinate only very slowly in response to HP. It is essential to understand the properties of HPSD spores and the underlying causes of superdormancy to tackle superdormant spores and further develop germination-inactivation strategies involving HP. This study investigated factors influencing the prevalence of HPSD spores and successfully isolated them by combining buoyant density centrifugation and fluorescence-activated cell sorting, which allowed further characterisation of HPSD spores for the first time. The prevalence of HPSD spores was shown to be strongly dependent on the HP dwell time, with increasing treatment times reducing their prevalence. Spore mutants lacking major germinant receptors further showed a highly increased prevalence of HPSD spores; 93% of the spores remained dormant even after a prolonged HP dwell time of 40 min. In contrast to nutrient germination, sublethal heat treatment of 75 °C for 30 min prior to pressure treatment did not induce spore activation and increase germination. The isolated HPSD spores did not show visible structural differences compared to the initial dormant spores when investigated with transmission electron microscopy. Re-sporulated HPSD spores showed similar germination capacity compared to the initial dormant spores, indicating that HPSD spores are most likely not genetically different from the rest of the population. Moreover, the majority of HPSD spores germinated when exposed a second time to the same germination treatment; however, the germination capacity was lower than that of the initial population. The fact that the majority of spores lost superdormancy when exposed a second time to the same trigger makes it unlikely that there is one factor that determines whether a spore germinates with a certain HP treatment or not. Instead, it seems possible that there are other reversible or cumulative causes. This study investigated the factors influencing spore HP superdormancy to improve the understanding of HPSD spores with regard to their stability, germination capacity, and potential underlying causes of spore HP superdormancy. This knowledge will contribute to the development of HP-based germination-inactivation strategies for gentle but effective spore control.


Subject(s)
Bacillus subtilis/physiology , Spores, Bacterial/growth & development , Spores, Bacterial/isolation & purification , Spores, Bacterial/physiology , Bacillus subtilis/genetics , Bacillus subtilis/growth & development , Bacillus subtilis/isolation & purification , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Decontamination , Flow Cytometry , Mutation , Pressure , Spores, Bacterial/genetics , Temperature , Time Factors
14.
Food Microbiol ; 95: 103715, 2021 May.
Article in English | MEDLINE | ID: mdl-33397628

ABSTRACT

The objective of this study was the characterization of the microbiota associated with spoilage of vanilla cream pudding during storage at different temperatures. Commercial cream samples were stored aerobically at 4, 8, 12 and 15 °C for a maximum time period of 40 days. At appropriate time intervals, cream samples were subjected to: (i) microbiological analyses, and (ii) high-performance liquid chromatography (HPLC). Furthermore, the spoilage microbiota was identified through repetitive extragenic palindrome-PCR, while selected isolates were further characterized based on sequencing of the V1-V3 region of the 16S rRNA gene. Microbial growth was observed only during storage of cream samples at 12 and 15 °C, with the applied genotypic analysis demonstrating that Bacillus subtilis subsp. subtilis was the dominant spoilage microorganism of this product. Based on the HPLC analysis results, citric acid and sucrose were the most abundant organic acid and sugar, respectively throughout storage of cream pudding, whereas notable changes mainly included: (i) increase in the concentration of lactic acid and to a lesser extent of formic and acetic acids, and (ii) increase in the concentration of glucose and fructose at the expense of sucrose and lactose. The results of this study should be useful for the dairy industry in detecting and controlling microbiological spoilage in cream pudding and other chilled, neutral-pH dairy desserts.


Subject(s)
Bacillus subtilis/growth & development , Bacillus subtilis/isolation & purification , Dairy Products/microbiology , Bacillus subtilis/classification , Bacillus subtilis/genetics , Colony Count, Microbial , Dairy Products/analysis , Food Contamination/analysis , Food Microbiology , Food Storage , Hydrogen-Ion Concentration
15.
Anal Chem ; 93(3): 1569-1577, 2021 01 26.
Article in English | MEDLINE | ID: mdl-33369400

ABSTRACT

Herein, an interference-free surface-enhanced Raman scattering (SERS) platform with a "sandwich" structure has been developed for reliable detection and photothermal killing of bacteria with whole blood as the real sample. The multifunctional platform comprised a plasmonic gold film (pAu) functionalized with bacteria-capturing units of 4-mercaptophenylboronic acid and internal reference of 4-mercaptobenzonitrile as the SERS substrate and vancomycin-modified core (gold)-shell (Prussian blue) nanoparticles (Au@PB@Van NPs) as the SERS tag. The detected SERS signals were from the Raman-silent region where no background signals occurred from biological sources, eliminating the interference and improving the detection sensitivity and accuracy. As a proof-of-concept, model bacterial strain, Staphylococcus aureus, was captured and detected in the whole blood samples. Furthermore, high antibacterial efficiency of approximately 100% was reached under the synergistic photothermal effect from pAu and Au@PB@Van NPs. This study provides a new avenue for bacteria detection in real samples and their subsequent in situ elimination.


Subject(s)
Anti-Bacterial Agents/chemistry , Bacillus subtilis/isolation & purification , Escherichia coli/isolation & purification , Salmonella typhimurium/isolation & purification , Staphylococcus aureus/isolation & purification , Vancomycin/chemistry , Anti-Bacterial Agents/pharmacology , Bacillus subtilis/drug effects , Boronic Acids/chemistry , Escherichia coli/drug effects , Gold/chemistry , Humans , Nitriles/chemistry , Particle Size , Photochemical Processes , Salmonella typhimurium/drug effects , Spectrum Analysis, Raman , Staphylococcus aureus/drug effects , Sulfhydryl Compounds/chemistry , Surface Properties , Temperature , Vancomycin/pharmacology
16.
J Basic Microbiol ; 61(2): 110-121, 2021 Feb.
Article in English | MEDLINE | ID: mdl-33368461

ABSTRACT

Bacillus subtilis strain CL2 is antagonistic to wolfberry postharvest pathogenic fungi. In this study, we isolated and screened this strain for in vitro experiments. The result of the two-sealed-base-plates method revealed that volatile organic compounds (VOCs) emitted from the strain CL2 inhibited the hyphal growth of four pathogenic fungi Mucor circinelloides LB1, Fusarium arcuatisporum LB5, Alternaria iridiaustralis LB7, and Colletotrichum fioriniae LB8. After exposure to VOCs for 5 days, the hyphal growth of the pathogen C. fioriniae LB8 was inhibited by 73%. Scanning electron microscopy revealed that the VOCs produced by B. subtilis CL2 caused the mycelium morphology of the pathogenic fungi to deform, twist, fold, and shrink. In the in vivo experiments, we noticed that VOCs could significantly reduce the weight loss rate of wolfberry fruits caused by the pathogenic fungus M. circinelloides LB1 and that the decay incidence rate were caused by the pathogenic fungi F. arcuatisporum LB5, A. iridiaustralis LB7, and C. fioriniae LB8. On the basis of the headspace-gas chromatography-ion mobility spectrometry analysis, seven VOCs produced by strain CL2 were identified. Among them, 2,3-butanedione and 3-methylbutyric acid are the main antifungal active substances. This study investigated the antifungal properties of VOCs produced by the strain CL2 on postharvest pathogenic fungi isolated from wolfberry fruits both in vivo and in vitro, thereby providing the theoretical basis for its future applications.


Subject(s)
Bacillus subtilis/metabolism , Fungicides, Industrial/pharmacology , Lycium/microbiology , Plant Diseases/microbiology , Volatile Organic Compounds/pharmacology , Bacillus subtilis/isolation & purification , Diacetyl/pharmacology , Fruit/microbiology , Fungi/drug effects , Fungi/growth & development , Fungi/ultrastructure , Fungicides, Industrial/chemistry , Fungicides, Industrial/metabolism , Hemiterpenes/pharmacology , Mycelium/drug effects , Mycelium/growth & development , Mycelium/ultrastructure , Pentanoic Acids/pharmacology , Plant Diseases/prevention & control , Volatile Organic Compounds/chemistry , Volatile Organic Compounds/metabolism
17.
J Appl Microbiol ; 131(1): 339-359, 2021 Jul.
Article in English | MEDLINE | ID: mdl-33269514

ABSTRACT

AIMS: The aim of this study was to identify the best combination of plant growth promoting bacteria (PGPB) and arbuscular mycorrhizal fungi (AMF) for biofortification and enhancing yield in wheat as well as improve soil health under field conditions. Another aim was to get insights into metabolite dynamics in plants treated with PGPB and AMF. METHODS AND RESULTS: Different combinations of PGPB and AMF that gave good results in greenhouse study were used in a field study. The combined application of Bacillus subtilis CP4 (native PGPB) and AMF gave the best results with a significant increase in biomass, macronutrient and micronutrient content in wheat grains and improvement in yield-related parameters relative to the untreated control. PGPB and AMF treatment increased antioxidant enzymes and compounds and decreased the level of an oxidation marker. Metabolite profiling performed using Gas Chromatography-Mass Spectrometry (GC-MS) showed significant upregulation of specific organic acids, amino acids, sugars and sugar alcohols in plants treated with CP4 and AMF. The altered pathways due to CP4 and AMF inoculation mainly belong to carbohydrate and amino acid metabolism. A positive correlation was observed between some organic acids, sugars and amino acids with wheat growth and yield parameters. The activities of soil enzymes increased significantly with the best results shown by native PGPB and AMF combination. CONCLUSIONS: A native bacterial isolate Bacillus subtilis CP4 in combination with AMF showed exceptional ability for biofortification and yield enhancement under field conditions. The upregulation of a number of metabolites showed correlation plant growth promotion and nutrients. SIGNIFICANCE AND IMPACT OF THE STUDY: The combined application of native B. subtilis CP4 and AMF could offer a more sustainable approach for the development of a biofertilizer to enhance wheat nutrient content and production and soil health thereby advancing agriculture.


Subject(s)
Bacillus subtilis/physiology , Mycorrhizae/physiology , Soil Microbiology , Triticum/growth & development , Agriculture/methods , Bacillus subtilis/isolation & purification , Biofortification , Biomass , Mycorrhizae/isolation & purification , Plant Roots/microbiology , Seeds/microbiology , Soil/chemistry , Triticum/chemistry , Triticum/metabolism , Triticum/microbiology
18.
Lett Appl Microbiol ; 72(1): 74-81, 2021 Jan.
Article in English | MEDLINE | ID: mdl-32970874

ABSTRACT

The present research aims to enhance the biosurfactant (BS) production using agricultural by-products as a low-cost substrate with the statistical approach. BS production from Bacillus subtilis SASCBT01 was carried out with four different variables such as pH, incubation time, cassava peel waste (CPW) and palmira sprout (PS). The model expected the highest emulsification activity of 65 ± 1·2% after 96-h incubation with 3·0 g l-1 of CPW and PS at pH 7·0. The SASCBT01 strain-based BS was successful at retrieving up to 18% and the highest Pb removal rates were found at 65%. These BS have considered high quality in bioremediation applications.


Subject(s)
Bacillus subtilis/metabolism , Soil Microbiology , Soil Pollutants/metabolism , Surface-Active Agents/metabolism , Bacillus subtilis/genetics , Bacillus subtilis/isolation & purification , Environmental Restoration and Remediation , Hydrogen-Ion Concentration , Industrial Oils , Industrial Waste , Lead/metabolism , Petroleum Pollution
19.
Probiotics Antimicrob Proteins ; 13(1): 60-71, 2021 02.
Article in English | MEDLINE | ID: mdl-32607730

ABSTRACT

Unveiling and understanding differences in physiological features below the species level may serve as an essential fast-screening tool for selecting strains that can promote a specific probiotic effect. To study the intra-species diversity of Bacillus, a genus with a wide range of enzyme activities and specificity, 190 Bacillus strains were isolated from traditional Korean fermented food products. Altogether, in the preliminary safety screening, 8 of these strains were found negative for lecithinase and hemolysis activity and were selected for further investigations. On the basis of different levels of enzyme functionalities (high or low proteolytic, amylolytic, and lipolytic (PAL) activities), two Bacillus subtilis strains were selected for an in vivo study. Each of the two strains was separately administered at a level of 1 × 108 CFU per day to C57BL/6 mice that were fed 60% high-fat diet ad libitum for 8 weeks, while Xenical, an anti-obesity drug, was used as a positive control in the experimental setup. B. subtilis M34 and B. subtilis GS40a with low and high amylolytic activities, respectively, induced significantly different and contrasting physiological effects. The production of short-chain fatty acids appeared to be closely associated with a shift in the gut microbiota.


Subject(s)
Bacillus subtilis/isolation & purification , Diet, High-Fat/adverse effects , Fermented Foods/microbiology , Gastrointestinal Microbiome , Obesity , Probiotics , Safety , Animals , Bacillus subtilis/classification , Mice , Mice, Inbred C57BL , Obesity/chemically induced , Obesity/metabolism , Obesity/microbiology , Obesity/therapy , Probiotics/isolation & purification , Probiotics/pharmacology , Republic of Korea
20.
Int J Biol Macromol ; 166: 1471-1479, 2021 Jan 01.
Article in English | MEDLINE | ID: mdl-33171181

ABSTRACT

In this study, the sponge-associated a potential endosymbiotic bacterium, Bacillus subtilis MKU SERB2 was identified and optimized the production of exopolysaccharide (EPS) by using response surface methodology (RSM). The central composite rotatable design (CCRD) exhibited the highest yield of EPS (617.81 µg/mL) obtained from the optimized medium containing 11.5 g/L of sucrose, 3.5 g/L of yeast extract, 3.0 g/L of peptone, and 2.5 g/L of calcium chloride. Fourier transform infrared (FTIR) spectrum of purified EPS indicated that the presence of carboxyl, hydroxyl, and amide as functional groups, and their structural composition was confirmed by 1H and 13C nuclear magnetic resonance (NMR) analysis. Moreover, the fibrous, porous and semi-crystalline nature of EPS was confirmed by SEM and X-ray powder diffraction (XRD) analysis and the EDX inferred demonstrated the presence of C, Na, O, N, S, and Cl respectively. Further, the isolated EPS exhibited potent antioxidant activity and moderate anticoagulant efficacy whereas there was no hemolytic and lymphocytes toxicity. Overall, our result suggests that the functional and biological properties of the EPS imply the potential applications in food and pharmaceutical industries in the future.


Subject(s)
Anticoagulants/chemistry , Antioxidants/chemistry , Bacillus subtilis/chemistry , Polysaccharides, Bacterial/chemistry , Animals , Anticoagulants/pharmacology , Anticoagulants/toxicity , Antioxidants/pharmacology , Antioxidants/toxicity , Bacillus subtilis/isolation & purification , Bacillus subtilis/pathogenicity , Erythrocytes/drug effects , Hemolysis , Humans , Lymphocytes/drug effects , Polysaccharides, Bacterial/pharmacology , Polysaccharides, Bacterial/toxicity , Porifera/microbiology
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