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1.
Int J Food Microbiol ; 418: 110730, 2024 Jun 16.
Article in English | MEDLINE | ID: mdl-38714095

ABSTRACT

Aerobic spore-forming (ASF) bacteria have been reported to cause ropiness in bread. Sticky and stringy degradation, discoloration, and an odor reminiscent of rotting fruit are typical characteristics of ropy bread spoilage. In addition to economic losses, ropy bread spoilage may lead to health risks, as virulent strains of ASF bacteria are not uncommon. However, the lack of systematic approaches to quantify physicochemical spoilage characteristics makes it extremely difficult to assess rope formation in bread. To address this problem, the aim of this study was to identify, characterize and objectively assess the spoilage potential of ASF bacteria associated with ropy bread. Hence, a set of 82 ASF bacteria, including isolates from raw materials and bakery environments as well as strains from international culture collections, were identified by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF-MS) and their species identity confirmed by 16S rRNA and gyrA or panC gene sequencing. A standardized approach supported by objective colorimetric measurements was developed to assess the rope-inducing potential (RIP) of a strain by inoculating autoclaved bread slices with bacterial spores. In addition, the presence of potential virulence factors such as swarming motility or hemolysis was investigated. This study adds B. velezensis, B. inaquosorum and B. spizizenii to the species potentially implicated of causing ropy bread spoilage. Most importantly, this study introduces a standardized classification protocol for assessing the RIP of a bacterial strain. Colorimetric measurements are used to objectively quantify the degree of breadcrumb discoloration. Furthermore, our results indicate that strains capable of inducing rope spoilage in bread often exhibit swarming motility and virulence factors such as hemolysis, raising important food quality considerations.


Subject(s)
Bread , Food Microbiology , Bread/microbiology , Spores, Bacterial/growth & development , Bacteria, Aerobic/isolation & purification , Bacteria, Aerobic/classification , Bacteria, Aerobic/genetics , Bacteria, Aerobic/growth & development , RNA, Ribosomal, 16S/genetics , Virulence Factors/genetics , Food Contamination/analysis , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
2.
BMC Microbiol ; 21(1): 19, 2021 01 09.
Article in English | MEDLINE | ID: mdl-33422011

ABSTRACT

BACKGROUND: The porcine respiratory tract harbours multiple microorganisms, and the interactions between these organisms could be associated with animal health status. Pasteurella multocida is a culturable facultative anaerobic bacterium isolated from healthy and diseased porcine respiratory tracts. The interaction between P. multocida and other aerobic commensal bacteria in the porcine respiratory tract is not well understood. This study aimed to determine the interactions between porcine P. multocida capsular serotype A and D strains and other culturable aerobic bacteria isolated from porcine respiratory tracts using a coculture assay in conditioned media followed by calculation of the growth rates and interaction parameters. RESULTS: One hundred and sixteen bacterial samples were isolated from five porcine respiratory tracts, and 93 isolates were identified and phylogenetically classified into fourteen genera based on 16S rRNA sequences. Thirteen isolates from Gram-negative bacterial genera and two isolates from the Gram-positive bacterial genus were selected for coculture with P. multocida. From 17 × 17 (289) interaction pairs, the majority of 220 pairs had negative interactions indicating competition for nutrients and space, while 17 pairs were identified as mild cooperative or positive interactions indicating their coexistence. All conditioned media, except those of Acinetobacter, could inhibit P. multocida growth. Conversely, the conditioned media of P. multocida also inhibited the growth of nine isolates plus themselves. CONCLUSION: Negative interaction was the major interactions among the coculture of these 15 representative isolates and the coculture with P. multocida. The conditioned media in this study might be further analysed to identify critical molecules and examined by the in vivo experiments. The study proposed the possibility of using these molecules in conditioned media to control P. multocida growth.


Subject(s)
Bacteria, Aerobic/growth & development , Culture Media, Conditioned/pharmacology , Pasteurella multocida/growth & development , Respiratory System/microbiology , Sequence Analysis, DNA/methods , Animals , Bacteria, Aerobic/classification , Bacteria, Aerobic/physiology , Coculture Techniques , Culture Media, Conditioned/chemistry , DNA, Bacterial/genetics , DNA, Ribosomal/genetics , Microbial Interactions , Microbial Viability/drug effects , Pasteurella multocida/drug effects , Phylogeny , RNA, Ribosomal, 16S/genetics , Swine
3.
mSphere ; 5(4)2020 07 01.
Article in English | MEDLINE | ID: mdl-32611696

ABSTRACT

Phytoplankton is a key component of aquatic microbial communities, and metabolic coupling between phytoplankton and bacteria determines the fate of dissolved organic carbon (DOC). Yet, the impact of primary production on bacterial activity and community composition remains largely unknown, as, for example, in the case of aerobic anoxygenic phototrophic (AAP) bacteria that utilize both phytoplankton-derived DOC and light as energy sources. Here, we studied how reduction of primary production in a natural freshwater community affects the bacterial community composition and its activity, focusing primarily on AAP bacteria. The bacterial respiration rate was the lowest when photosynthesis was reduced by direct inhibition of photosystem II and the highest in ambient light condition with no photosynthesis inhibition, suggesting that it was limited by carbon availability. However, bacterial assimilation rates of leucine and glucose were unaffected, indicating that increased bacterial growth efficiency (e.g., due to photoheterotrophy) can help to maintain overall bacterial production when low primary production limits DOC availability. Bacterial community composition was tightly linked to light intensity, mainly due to the increased relative abundance of light-dependent AAP bacteria. This notion shows that changes in bacterial community composition are not necessarily reflected by changes in bacterial production or growth and vice versa. Moreover, we demonstrated for the first time that light can directly affect bacterial community composition, a topic which has been neglected in studies of phytoplankton-bacteria interactions.IMPORTANCE Metabolic coupling between phytoplankton and bacteria determines the fate of dissolved organic carbon in aquatic environments, and yet how changes in the rate of primary production affect the bacterial activity and community composition remains understudied. Here, we experimentally limited the rate of primary production either by lowering light intensity or by adding a photosynthesis inhibitor. The induced decrease had a greater influence on bacterial respiration than on bacterial production and growth rate, especially at an optimal light intensity. This suggests that changes in primary production drive bacterial activity, but the effect on carbon flow may be mitigated by increased bacterial growth efficiencies, especially of light-dependent AAP bacteria. Bacterial activities were independent of changes in bacterial community composition, which were driven by light availability and AAP bacteria. This direct effect of light on composition of bacterial communities has not been documented previously.


Subject(s)
Bacteria, Aerobic/metabolism , Ecosystem , Microbiota , Phototrophic Processes , Bacteria, Aerobic/growth & development , Bacterial Physiological Phenomena , Fresh Water/microbiology , Light , Photosynthesis , Seawater/microbiology
4.
World J Microbiol Biotechnol ; 36(3): 37, 2020 Feb 22.
Article in English | MEDLINE | ID: mdl-32088780

ABSTRACT

Saline wastewaters are usually generated by various industries, including the chemical, pharmaceutical, agricultural, and aquacultural industries. The discharge of untreated high-salinity wastewater may cause serious environmental pollution and damage the aquatic, terrestrial, and wetland ecosystems. For many countries, the treatment of saline wastewater has become an important task. Generally, saline wastewaters are treated through physical and chemical methods. However, these traditional techniques are associated with higher treatment costs and the generation of byproducts. In contrast, biotreatment techniques are environmentally friendly and inexpensive. This review highlights the sources and environmental concerns of high-salinity wastewater and illustrates the latest problems and solutions to the use of biological approaches for treating saline wastewater. Although high salinity may inhibit the effectiveness of aerobic and anaerobic biological wastewater treatment methods, such strategies as selecting salt-adapted microorganisms capable of degrading pollutants with tolerance to high salinity and optimizing operating conditions can be effective. This mini-review may serve as a reference for future efforts to treat high-salinity wastewater.


Subject(s)
Bacteria, Aerobic/growth & development , Bacteria, Anaerobic/growth & development , Wastewater/analysis , Aerobiosis , Anaerobiosis , Bacteria, Aerobic/metabolism , Bacteria, Anaerobic/metabolism , Biodegradation, Environmental , Bioreactors/microbiology , Salinity
5.
PLoS One ; 15(1): e0215341, 2020.
Article in English | MEDLINE | ID: mdl-31945063

ABSTRACT

Geobacter sulfurreducens was originally considered a strict anaerobe. However, this bacterium was later shown to not only tolerate exposure to oxygen but also to use it as terminal electron acceptor. Research performed has so far only revealed the general ability of G. sulfurreducens to reduce oxygen, but the oxygen uptake rate has not been quantified yet, nor has evidence been provided as to how the bacterium achieves oxygen reduction. Therefore, microaerobic growth of G. sulfurreducens was investigated here with better defined operating conditions as previously performed and a transcriptome analysis was performed to elucidate possible metabolic mechanisms important for oxygen reduction in G. sulfurreducens. The investigations revealed that cell growth with oxygen is possible to the same extent as with fumarate if the maximum specific oxygen uptake rate (sOUR) of 95 mgO2 gCDW-1 h-1 is not surpassed. Hereby, the entire amount of introduced oxygen is reduced. When oxygen concentrations are too high, cell growth is completely inhibited and there is no partial oxygen consumption. Transcriptome analysis suggests a menaquinol oxidase to be the enzyme responsible for oxygen reduction. Transcriptome analysis has further revealed three different survival strategies, depending on the oxygen concentration present. When prompted with small amounts of oxygen, G. sulfurreducens will try to escape the microaerobic area; if oxygen concentrations are higher, cells will focus on rapid and complete oxygen reduction coupled to cell growth; and ultimately cells will form protective layers if a complete reduction becomes impossible. The results presented here have important implications for understanding how G. sulfurreducens survives exposure to oxygen.


Subject(s)
Bacteria, Aerobic/genetics , Bacterial Proteins/genetics , Geobacter/genetics , Transcriptome/genetics , Bacteria, Aerobic/growth & development , Bacteria, Anaerobic/genetics , Ferric Compounds/metabolism , Fumarates/metabolism , Gene Expression Profiling , Gene Expression Regulation, Bacterial/genetics , Geobacter/growth & development , Oxidation-Reduction , Oxygen/metabolism
6.
PLoS One ; 15(1): e0227151, 2020.
Article in English | MEDLINE | ID: mdl-31986161

ABSTRACT

Soaking hay fodder to reduce dust and soluble carbohydrate (WSC) contents prior to feeding is common practice among horse owners. Soaking can increase bacteria load in hay but no information exists on how this process alters the bacteria profile, which could pose a health risk or digestive challenge, to horses by introducing foreign bacteria into the gastrointestinal tract and so altering the normal profile. The current objectives were to map the bacterial profile of 3 different hays and determine how soaking alters this with the aim of improving best practice when feeding stabled horses. A Perennial Rye grass hay and two meadow s hays were soaked for 0, 1.5, 9 or 16 hours. Pre and post treatment, hays were analysed for WSC and total aerobic bacteria (CFU/g), and differences in bacteria family profiles were determined using ANOVA with significance set at P<0.05. Bacteria were identified via genomic DNA extraction and 16S library preparation (V3 and V4 variable region of 16S rRNA) according to the Illumina protocol. Differences in family operational taxonomic units (OTUs) between individual dry hays and different soaking times were identified via paired t-tests on the DESeq2 normalised data and false discovery rates accounted for using Padj (P<0.05). Mean % WSC losses and actual g/kg lost on DM basis (+/- SE) increased with soaking time being 18% = 30 (10.7), 38% = 72 (43.7), and 42% = 80 (38.8) for 1.5, 9 and 16 hours soak respectively. No relationship existed between WSC leaching and bacteria growth or profile. Grass type influenced bacterial profiles and their responses to soaking, but no differences were seen in richness or Shannon diversity indices. PCA analyses showed clustering of bacteria between meadow hays which differed from the perennial rye grass hay and this difference increased post soaking. Soaking hay pre-feeding causes inconsistent WSC leaching, bacteria growth and alterations in bacterial profiles which are unpredictable but may decrease the hygienic quality of the fodder.


Subject(s)
Animal Feed/microbiology , Bacteria, Aerobic/growth & development , Bacteria, Aerobic/genetics , Lolium/microbiology , Wettability , Animals , Animals, Domestic , Base Sequence , Carbohydrates/analysis , DNA, Bacterial/genetics , Horses , Polymerase Chain Reaction , Principal Component Analysis , RNA, Ribosomal, 16S , Water
7.
Meat Sci ; 162: 107961, 2020 Apr.
Article in English | MEDLINE | ID: mdl-31706632

ABSTRACT

Beef is an animal food sensitive to deterioration due to its rich nutrient content. Therefore, some preservation techniques are applied. These include vacuum packaging, a modified atmosphere, a controlled atmosphere and an edible film coating. In this study, it was aimed to extend the shelf life of beef using vacuum packaging (VP) and chitosan coating with vacuum packaging (CC + VP). For this purpose, total mesophilic aerobic bacteria (TMAB), Stapylococcus aureus, lactic acid bacteria (LAB) counts, thiobarbituric acid (TBA) values and total volatile basic nitrogen (TVB-N) content were analyzed in beef obtained from local markets. As a result, it was found that the chitosan coating reduced the TMAB, LAB and TVB-N values and inhibited all S. aureus up to day 15 of storage. In addition, it was seen that the application of CC + VP was significantly more effective (p˂0.05) on the reduction of the TBA value, compared to the VP application over a long period of storage (45 days). The combined use of the two technologies is more effective on TVB-N. According to the data obtained from this study, because of the antimicrobial and antioxidant properties of chitosan, it has been concluded that it can be used as a bio-preservative in the meat industry.


Subject(s)
Chitosan , Food Packaging/methods , Food Preservation/methods , Red Meat/microbiology , Animals , Bacteria, Aerobic/growth & development , Cattle , Colony Count, Microbial , Food Microbiology , Lactobacillales/growth & development , Red Meat/analysis , Staphylococcus aureus/growth & development , Thiobarbituric Acid Reactive Substances/analysis , Vacuum
8.
Appl Microbiol Biotechnol ; 104(1): 365-375, 2020 Jan.
Article in English | MEDLINE | ID: mdl-31768610

ABSTRACT

Microbially induced CaCO3 precipitation (MICP) can give concrete self-healing properties. MICP agents are typically bacterial endospores which are coated into shelled granules, infused into expanded clay, or embedded into superabsorbent polymer (SAP). When small cracks appear in the cured concrete, the encapsulation is broken and the metabolic CO2 production from the germinated bacteria causes healing of the cracks by precipitation of CaCO3. Such systems are being tested empirically at large scales, but survival of endospores through preparation and application, as well as germination and growth kinetics of the germinated vegetative cells, remains poorly resolved. We encapsulated endospores of Bacillus subtilis and Bacillus alkalinitrilicus in crosslinked acrylamide-based SAP and quantified their germination, growth, and, in the case of B. alkalinitrilicus, CaCO3 precipitation potential. The endospores survived crosslinking and desiccation inside the polymer matrix. Microcalorimetry and microscopy showed that ~ 80% of the encapsulated endospores of both strains readily germinated after rehydration of freeze-dried SAP. Germinated cells grew into dense colonies of cells inside the SAP, and those of B. alkalinitrilicus calcified with up to 0.3 g CaCO3 produced per g desiccated SAP when incubated aerobically. Measurements by planar optodes indicated that the precipitation rates were inherently oxygen limited due to diffusional constraints, rather than limited by electron donor or Ca2+ availability. Such oxygen limitation will limit MICP in all water-saturated and oxygen-dependent systems, and MICP agents based on anaerobic bacteria, e.g., nitrate reducers, should be developed to broaden the applicability of bioactive self-healing concretes to wet and waterlogged environments.


Subject(s)
Bacillus subtilis/metabolism , Bacillus/metabolism , Calcium Carbonate/metabolism , Chemical Precipitation , Polymers/chemistry , Acrylamide/chemistry , Bacillus/growth & development , Bacillus subtilis/growth & development , Bacteria, Aerobic/growth & development , Bacteria, Aerobic/metabolism , Biochemical Phenomena , Carbon Dioxide/metabolism , Oxygen/metabolism , Spores, Bacterial/metabolism , Water/metabolism
9.
BMC Microbiol ; 19(1): 189, 2019 08 16.
Article in English | MEDLINE | ID: mdl-31419942

ABSTRACT

BACKGROUND: Human skin is an appropriate environment for the growth of different types of microbes that may inhabit the skin as commensal flora. This study aims at identifying the diversity of skin microbiota in healthy Saudi population. In this study, 80 Saudi subjects of both males and females, from different habitat, and different ages (elderly and young), were recruited to determine the aerobic bacterial flora from their three skin sites; hand, scalp and foot. A single colony obtained from aerobic culture was identified using Biomérieux VITEK® 2 system. For those not being identified by VITEK® 2 system, the identification was conducted using 16 s rRNA sequence. RESULTS: Thirty-three bacterial species were isolated from males, whilst 24 species were isolated from females. Micrococci are the predominant organisms, followed by Staphylococci, Pantoea species, and lastly Enterococcus faecium. Acinetobacter baumannii, Enterococcus faecalis, and Klebsiella pneumoniae were only found in elder subjects, while Pseudomonas aeruginosa was isolated from the young only. The number of bacterial isolates in the elders was higher that of the young. The average number of flora was larger in foot, then hand and lastly scalp. CONCLUSION: Here we show the difference in the number of cultivable bacteria across age and gender that may result in the variety of local skin infection. This study paves the way to further investigation in the aspect of in-depth metagenomics analysis and host-pathogen interaction.


Subject(s)
Bacteria, Aerobic/isolation & purification , Skin/microbiology , Adolescent , Adult , Aged , Aged, 80 and over , Bacteria, Aerobic/classification , Bacteria, Aerobic/genetics , Bacteria, Aerobic/growth & development , Child , Female , Humans , Male , Microbiota , Middle Aged , Saudi Arabia , Young Adult
10.
J Agric Food Chem ; 67(14): 4043-4053, 2019 Apr 10.
Article in English | MEDLINE | ID: mdl-30883111

ABSTRACT

Cold plasma technology offers new opportunities to the decontamination and preservation of fruits and vegetables. In the present research, strawberries were cut into four wedges and then treated with dielectric barrier discharge plasma at 45 kV for 1 min and stored for 1 week (4 °C). Metabolomic analysis suggested that plasma treatment improved the biosynthesis of the metabolites in the "flavones and flavonol biosynthesis" pathway and "biosynthesis of phenylpropanoids" pathway in fresh-cut strawberries. Physiological assay demonstrated that plasma treatment maintained the texture properties and inhibited microbial growth of fresh-cut strawberries. In addition, plasma treatment also promoted the accumulation of total phenolics, total flavonoid, and anthocyanin by enhancing the critical enzyme activities and activating related gene expression in phenylpropanoid as well as reactive oxygen species metabolism, which contributed greatly to the enhancement of antioxidant capacity of strawberry wedges. Our investigation provided a new perspective of the effect of plasma treatment on the safety and quality of strawberry wedges and suggested that cold plasma treatment holds promise as an emerging processing technology for improving the quality and antioxidant activity of postharvest fruits and vegetables.


Subject(s)
Food Preservation/methods , Fragaria/chemistry , Fruit/drug effects , Plasma Gases/pharmacology , Antioxidants/metabolism , Bacteria, Aerobic/genetics , Bacteria, Aerobic/growth & development , Bacteria, Aerobic/isolation & purification , Fragaria/drug effects , Fragaria/metabolism , Fragaria/microbiology , Fruit/chemistry , Fruit/metabolism , Fruit/microbiology , Metabolomics , Reactive Oxygen Species/metabolism
11.
Meat Sci ; 149: 79-84, 2019 Mar.
Article in English | MEDLINE | ID: mdl-30481616

ABSTRACT

The effect of superchilled storage (SC, -4 °C) on shelf life and quality characteristics of M. longissimus lumborum from Chinese Yellow cattle compared with traditional chilling (TC, 2 °C) and frozen storage (-18 °C) was studied. The shelf life of beef steaks held at -4 °C extended to 12 weeks based on the total volatile basic nitrogen (TVB-N) value, which was 2.4 times longer than steaks stored at 2 °C. As the storage time increased, SC samples showed a lower increase of the total aerobic count (TAC), pH and thiobarbituric acid reactive substances (TBARS) values compared to TC samples. Further, L⁎ and a⁎ values of SC samples changed more slowly than that of TC samples. Beef steaks held frozen had a longer shelf life than SC steaks, however, the shear force of frozen steaks remained above 55 N throughout the storage time indicative of toughness. Consequently, SC offers an effective approach for maintaining better shelf life and quality of beef steaks.


Subject(s)
Food Storage/methods , Freezing , Red Meat/analysis , Animals , Bacteria, Aerobic/growth & development , Bacterial Load , Cattle , Cold Temperature , Color , Muscle, Skeletal/chemistry , Nitrogen/analysis , Red Meat/microbiology , Shear Strength , Thiobarbituric Acid Reactive Substances/analysis
12.
Meat Sci ; 147: 13-19, 2019 Jan.
Article in English | MEDLINE | ID: mdl-30172085

ABSTRACT

The effect of pH and the spoilage of black wildebeest Longissimus thoracis et lumborum (LTL) muscles with normal (pH > 6.06) and high pH (DFD; pH < 6.06) was investigated for 12 days under refrigerated (5 ±â€¯1 °C) aerobic conditions. Results showed that pH affected colour, as initial values from Normal samples (L* = 33.08, a* = 13.60, b* = 10.29, C* = 17.10 and Hab = 36.85) were greater than values for DFD meat (L* = 27.21, a* = 11.10, b* = 6.97, C* = 13.12 and Hab = 32.08). Initial bacterial counts from DFD and Normal pH samples did not differ significantly. Over time, pH decreased for Normal and DFD samples until the 6th and 9th day, respectively, whilst both samples showed a significant decrease in redness and colour intensity. Aerobic bacteria and Enterobacteriaceae reached 7 log cfu/g > 4 days earlier than Normal pH samples and bacterial growth rate was >1.09-fold faster in DFD than Normal meat.


Subject(s)
Color , Meat/analysis , Muscle, Skeletal/chemistry , Muscle, Skeletal/microbiology , Animals , Bacteria, Aerobic/growth & development , Bacteria, Aerobic/isolation & purification , Bacterial Load , Enterobacteriaceae/growth & development , Enterobacteriaceae/isolation & purification , Food Storage , Hydrogen-Ion Concentration , Meat/microbiology , Refrigeration , Ruminants
13.
Food Sci Technol Int ; 25(2): 160-170, 2019 Mar.
Article in English | MEDLINE | ID: mdl-30426798

ABSTRACT

The objective of this work was to determine the effects of infrared radiation combined with heating on grape seeds and oil quality. Experimental results showed that high moisture removal was achieved through infrared radiation heating. After infrared radiation heating for 108 s, the inactivation rates of total aerobic bacterial and total mold-yeast counts of the grape seeds were 1.97 ± 0.12 and 0.62 ± 0.09 log CFU/g, respectively. The maximum microbial reduction was achieved after infrared radiation heating of the grape seeds to 135 ℃ and subsequent holding at 75 ℃ for 60 min. The crude oil yield of samples subjected to these conditions was 10.39%, which was significantly higher ( p < 0.05) than that of the control sample, and their final moisture content was 7.20%. Additionally, increases in the free fatty acid content and peroxide value of the oil were achieved. The iodine value of the oil decreased. In conclusion, surface pasteurization with a high oil yield could be achieved by the combination of infrared radiation heating and the holding process. Consequently, infrared radiation treatment is suggested to be a promising method for the surface pasteurization of grape seeds.


Subject(s)
Grape Seed Extract , Hot Temperature , Infrared Rays , Pasteurization/methods , Plant Oils , Seeds/microbiology , Vitis , Bacteria, Aerobic/growth & development , Fatty Acids/analysis , Fungi/growth & development , Heating , Iodine/analysis , Lipid Peroxidation , Water/analysis , Yeasts/growth & development
14.
J Hazard Mater ; 359: 222-230, 2018 10 05.
Article in English | MEDLINE | ID: mdl-30036752

ABSTRACT

Wastewater treatment by means of algal-bacterial granules has become a hot topic worldwide recently. Rapid granulation of algal-bacterial granules was achieved in an aerobic bacterial granular sequencing batch reactor (SBR) under natural sunlight exposure. Occurrence of abundant filamentous bacteria bridging the water-born algae, and overproduction of extracellular polymeric substances (EPS) (especially polysaccharides (PS), tryptophan & protein-like, and humic acid-like substances) were observed on the first 3 days, while the algae grew into the inner side of the granules and mature granules were obtained on day 7. The growth of the water-born algae slightly decreased the settleability, mean sizes of the granules, but stimulated the bioactivity significantly. Whereas, the biomass retention decreased before day 3, and got stable soon with the maturation period with symbiotic growth of algal-bacterial biomass. Illumina results revealed that the introduction of algae reduced the richness and diversity of bacterial community. Besides, few changes in structure and some compositions shifts in bacterial communities were found, while the predominant algae shifted from Diatomea to green algae Chlorophyceae. The possible mechanism for natural sunlight induced granulation of algal-bacterial granules was thus proposed based on the interactions between algae and bacteria.


Subject(s)
Bacteria, Aerobic/radiation effects , Bioreactors , Chlorophyta/radiation effects , Sunlight , Bacteria, Aerobic/growth & development , Bacteria, Aerobic/metabolism , Chlorophyta/growth & development , Diatoms/growth & development , Extracellular Polymeric Substance Matrix/metabolism , Microbial Consortia , Sewage , Water Microbiology
15.
Sci Rep ; 8(1): 8862, 2018 06 11.
Article in English | MEDLINE | ID: mdl-29892072

ABSTRACT

The increase of extreme drought and precipitation events due to climate change will alter microbial processes. Perturbation experiments demonstrated that microbes are sensitive to environmental alterations. However, only little is known on the legacy effects in microbial systems. Here, we designed a laboratory microcosm experiment using aerobic methane-consuming communities as a model system to test basic principles of microbial resilience and the role of changes in biomass and the presence of non-methanotrophic microbes in this process. We focused on enrichments from soil, sediment, and water reflecting communities with different legacy with respect to exposure to drought. Recovery rates, a recently proposed early warning indicator of a critical transition, were utilized as a measure to detect resilience loss of methane consumption during a series of dry/wet cycle perturbations. We observed a slowed recovery of enrichments originating from water samples, which suggests that the community's legacy with a perturbation is a contributing factor for the resilience of microbial functioning.


Subject(s)
Bacteria, Aerobic/growth & development , Bacteria, Aerobic/metabolism , Methane/metabolism , Microbiota , Soil Microbiology , Water Microbiology , Biodiversity , Biomass , Climate Change , Droughts , Soil , Water
16.
Environ Sci Pollut Res Int ; 25(21): 20732-20742, 2018 Jul.
Article in English | MEDLINE | ID: mdl-29754302

ABSTRACT

Microalgae-based treatment systems have been successfully used for the polishing of domestic wastewater. Research is underway in studying the suitability of using these systems as main treatment units. This study focuses on comparing the performances of a mixed microalgal culture and an aerobic bacterial culture, based on the kinetic evaluation, in removing organic carbon from a kitchen wastewater. The two systems were operated at six different solid retention times (SRTs)-2, 4, 6, 8, 10, and 12 days in continuous mode. The influent and effluent samples were analyzed for chemical oxygen demand (COD), total organic carbon (TOC), total nitrogen (TN), phosphates, and surfactants. Steady-state kinetics (k, Ks, Y, and kd) for organic carbon removal were obtained by fitting experimental data in linearized Michaelis-Menten and Monod equations. The mixed microalgal system showed similar or better performance in COD and TN removal (88 and 85%, respectively) when compared with the COD and TN removal by the aerobic bacterial system (89 and 48%). A maximum lipid yield of 40% (w/w of dry biomass) was observed in the microalgal system. Saturated fatty acids accounted for 50% of the total observed FAME species. The study indicates that the mixed microalgal culture is capable of treating kitchen wastewater and has the potential to replace aerobic bacteria in biological treatment systems in certain cases.


Subject(s)
Bacteria, Aerobic/growth & development , Microalgae/growth & development , Waste Disposal, Fluid/methods , Wastewater/microbiology , Biological Oxygen Demand Analysis , Biomass , Kinetics , Lipids/analysis , Water Pollutants, Chemical/analysis
17.
Meat Sci ; 139: 49-55, 2018 May.
Article in English | MEDLINE | ID: mdl-29413676

ABSTRACT

The objective of the current study was to determine the effects of deboning time, three steps of sausage processing (grinding, salting, and batter formulation), and storage time (of raw materials and cooked sausage) on the growth (log CFU/g) of aerobic bacteria, lactic acid bacteria, and inoculated Salmonella and E. coli. Beef deboning time did not influence bacterial counts (P≥0.138). However, salting of raw ground beef resulted in a 0.4-log reduction in both aerobic plate count (APC) and Salmonella (P≤0.001). Lactic acid bacteria were increased from non-detectable concentration (0.54 log) on d 0 to 3.8 log on d 120 of vacuum storage (P≤0.019). Salmonella counts were increased (P<0.001) over storage time (3.2 to 3.3 log CFU/g from d 0 to 10). Results indicated that salting and batter formulation had a greater impact on bacterial counts than rigor state of raw beef.


Subject(s)
Escherichia coli/growth & development , Meat Products/microbiology , Salmonella/growth & development , Animals , Bacteria, Aerobic/growth & development , Cattle , Colony Count, Microbial , Food Handling/methods , Food Storage , Lactobacillales/growth & development
18.
PLoS One ; 13(1): e0190663, 2018.
Article in English | MEDLINE | ID: mdl-29304141

ABSTRACT

As important pests, scarab beetle larvae survive on plant biomass and the microbiota of the fermentation chamber play an important role in the digestion of lignocellulose-rich diets. However, the cultivable microbes, especially the anaerobic cultivable microbes, are still largely unknown. Here, both cultivable anaerobic and aerobic bacterial communities associated with the fermentation chamber of Holotrichia parallela larvae were investigated. In total bacteria cells directly enumerated by the 4', 6-diamidino-2-phenylindole (DAPI) staining method, the viable plate counts of cultivable bacteria in the fermentation chamber accounted for 0.92% of proportion. These cultivable bacteria were prone to attach to the fermentation chamber wall (88.41%) compared to the chamber contents. Anaerobic bacteria were dominant in the cultivable bacteria attaching to the fermentation chamber wall (70.20%), while the quantities of anaerobes and aerobes were similar in the chamber contents. Polymerase chain reaction-denaturing gradient gel electrophoresis (PCR-DGGE), fingerprinting and sequence analysis of isolated colonies revealed that the cultivable bacteria are affiliated with class γ-Proteobacteria, Bacteroidia, Actinobacteria, Clostridia and ß-Proteobacteria. γ-Proteobacteria was the major type of anaerobic cultivable bacteria and even the only one type of aerobic cultivable bacteria. Taken together, our results suggest, for the first time, that anaerobic microbiota are dominant in cultivable bacteria in the special anoxia niche of the fermentation chamber from H. parallela larvae. These bacterial isolates could be a treasure trove for screening lignocellulytic microbes which are essential for the plant biomass digestion of this scarab species.


Subject(s)
Bacteria, Aerobic/isolation & purification , Bacteria, Anaerobic/isolation & purification , Coleoptera/microbiology , Fermentation , Larva/microbiology , Animals , Bacteria, Aerobic/genetics , Bacteria, Aerobic/growth & development , Bacteria, Anaerobic/genetics , Bacteria, Anaerobic/growth & development , Coleoptera/growth & development , Colony Count, Microbial , Denaturing Gradient Gel Electrophoresis , Polymerase Chain Reaction , RNA, Ribosomal, 16S/genetics
19.
Food Sci Technol Int ; 24(4): 351-360, 2018 Jun.
Article in English | MEDLINE | ID: mdl-29338336

ABSTRACT

To avoid the loss of carotenoids and increasing the tannin content associated with pasteurization, we tested ultra-high pressure treatment of ripe persimmon beverage. We compared microbial counts (aerobic bacteria, coliforms, and mould), carotenoid contents, and water-soluble tannin contents between heat- and ultra-high pressure-treated beverages. No microbial contamination was detected after pasteurization or ultra-high pressure treatment at 400 MPa for more than 5 min. Ultra-high pressure treatment significantly prevented the reduction in carotenoids (lutein, zeaxanthin, ß-cryptoxanthin, ß-carotene, lycopene), with losses of 3.9-28.7%, as compared to the 65% loss after pasteurization. Moreover, ultra-high pressure did not induce an increase in water-soluble tannin, which causes astringent taste, whereas water-soluble tannins were increased three times by heat treatment. In conclusion, ultra-high pressure showed the same microbial control effect as pasteurization, while it did not cause carotenoid degeneration and increased tannin and thus, it better maintained the quality of ripe persimmon beverage.


Subject(s)
Bacteria, Aerobic/growth & development , Carotenoids/analysis , Diospyros/chemistry , Fruit and Vegetable Juices/analysis , Fruit and Vegetable Juices/microbiology , Fungi/growth & development , Tannins/analysis , Bacteria, Aerobic/isolation & purification , Colony Count, Microbial , Food Contamination/analysis , Food Handling , Food Microbiology , Fruit/chemistry , Fungi/isolation & purification , Hot Temperature , Hydrogen-Ion Concentration , Pasteurization , Pressure , Taste
20.
Chemosphere ; 195: 742-748, 2018 Mar.
Article in English | MEDLINE | ID: mdl-29289020

ABSTRACT

Remediation of polluted groundwater often requires oxygen delivery into subsurface to sustain aerobic bacteria. Air sparging or injection of oxygen containing solutions (e.g., hydrogen peroxide) into the subsurface are common. In this study visible light was delivered into the subsurface using radially emitting optical fibers. Phototrophic organisms grew near the optical fiber in a saturated sand column. When applying light in on-off cycles, dissolved oxygen (DO) varied from super saturation levels of >15 mg DO/L in presence of light to under-saturation (<5 mg DO/L) in absence of light. Non-photosynthetic bacteria dominated at longer radial distances from the fiber, presumably supported by soluble microbial products produced by the photosynthetic microorganisms. The dissolved oxygen variations alter redox condition changes in response to light demonstrate the potential to biologically deliver oxygen into the subsurface and support a diverse microbial community. The ability to deliver oxygen and modulate redox conditions on diurnal cycles using solar light may provide a sustainable, long term strategy for increasing dissolved oxygen levels in subsurface environments and maintaining diverse biological communities.


Subject(s)
Bacteria, Aerobic/metabolism , Biodegradation, Environmental , Optical Fibers , Oxygen/metabolism , Photobioreactors/microbiology , Photosynthesis/physiology , Bacteria, Aerobic/growth & development , Groundwater/chemistry , Hydrogen Peroxide/chemistry , Light , Oxidation-Reduction
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