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1.
Infect Genet Evol ; 121: 105606, 2024 Jul.
Article in English | MEDLINE | ID: mdl-38768878

ABSTRACT

We aimed to determine the importance of selection (mostly dependent on the anthropogenic use of antimicrobials) and transmission (mostly dependent on hygiene and sanitation) as drivers of the spread of antibiotic-resistant bacterial populations. The first obstacle to estimating the relative weight of both independent variables is the lack of detailed quantitative data concerning the number of bacterial cells, potentially either pathogenic or harmless, and bacterial species exposed to antimicrobial action in the microbiotas of specific environments. The second obstacle is the difficulty of considering the relative importance of the transmission and selection exerting their combined effects on antibiotic resistance across eco-biological levels. As a consequence, advances are urgently required in quantitative biology and organismic biology of antimicrobial resistance. The absolute number of humans exposed to antibiotics and the absolute number of potentially pathogenic and commensal bacteria in their microbiomes should influence both the selection and transmission of resistant bacterial populations. The "whole Earth" microbiome, with astonishingly high numbers of bacterial cells and species, which are also exposed to anthropogenic antimicrobials in various biogeographical spaces, shapes the antibiotic resistance landscape. These biogeographical spaces influence various intensities of selection and transmission of potentially pathogenic bacteria. While waiting for more precise data, biostatistics analysis and mathematical or computational modeling can provide proxies to compare the influence of selection and transmission in resistant bacteria. In European countries with lower sanitation levels, antibiotic consumption plays a major role in increasing antibiotic resistance; however, this is not the case in countries with high sanitation levels. Although both independent variables are linked, their relative influence on the level of antibiotic resistance varies according to the particular location. Therefore, interventions directed to decrease antibiotic resistance should be designed "a la carte" for specific locations with particular ecological conditions, including sanitation facilities.


Subject(s)
Anti-Bacterial Agents , Humans , Anti-Bacterial Agents/pharmacology , Bacteria/drug effects , Bacteria/classification , Drug Resistance, Bacterial , Microbiota/drug effects , Bacterial Infections/transmission , Bacterial Infections/microbiology , Selection, Genetic
2.
J Hosp Infect ; 131: 181-189, 2023 Jan.
Article in English | MEDLINE | ID: mdl-36347399

ABSTRACT

Carbapenemase-producing Enterobacterales (CPE) is an increasing public health concern; these bacteria are highly transmissible in hospital environments and the number of patients with these multidrug-resistant bacteria is rising. Healthcare workers caring for patients colonized with CPE offer insight into care delivery and processes in the hospital setting. The aim of this review was to explore healthcare workers' experiences of caring for patients colonized with CPE. A scoping review method was employed and seven electronic databases (CINAHL, Academic Search Complete, Cochrane, Embase, Medline, Web of Science and Scopus) and four grey literature databases (Open Grey, Grey Literature Report, Clinical trials. gov and WHO International Clinical Trials Registry Platform) were searched using specific search terms and inclusion/exclusion criteria. A PRISMA flow diagram was used to illustrate the process of article selection and thematic analysis used to form themes. Three studies met the criteria to be included in this review. Two main themes were identified from analysing the articles: 'Safeguarding' and 'Power of Knowledge'. The desire to protect themselves, their families and patients was evident from the studies. Healthcare workers were aware of the importance on infection prevention and control measures such as hand hygiene, in preventing the transmission of CPE, however barriers to these were identified, such as time constraints. In conclusion, healthcare workers have negative associations when it comes to caring for patients with CPE. Very little research has been conducted in the area and there is an opportunity to further explore the experience of healthcare workers caring for patients with CPE to identify opportunities for improvement and support of staff.


Subject(s)
Bacterial Infections , Gammaproteobacteria , Health Personnel , Infection Control , Humans , Bacterial Proteins , Gammaproteobacteria/pathogenicity , Health Personnel/psychology , Hospitals , Patient Care , Infection Control/methods , Bacterial Infections/prevention & control , Bacterial Infections/transmission
3.
Nat Commun ; 13(1): 586, 2022 01 31.
Article in English | MEDLINE | ID: mdl-35102136

ABSTRACT

Bacterial bloodstream infections are a major cause of morbidity and mortality among patients undergoing hematopoietic cell transplantation (HCT). Although previous research has demonstrated that pathogens may translocate from the gut microbiome into the bloodstream to cause infections, the mechanisms by which HCT patients acquire pathogens in their microbiome have not yet been described. Here, we use linked-read and short-read metagenomic sequencing to analyze 401 stool samples collected from 149 adults undergoing HCT and hospitalized in the same unit over three years, many of whom were roommates. We use metagenomic assembly and strain-specific comparison methods to search for high-identity bacterial strains, which may indicate transmission between the gut microbiomes of patients. Overall, the microbiomes of patients who share time and space in the hospital do not converge in taxonomic composition. However, we do observe six pairs of patients who harbor identical or nearly identical strains of the pathogen Enterococcus faecium, or the gut commensals Akkermansia muciniphila and Hungatella hathewayi. These shared strains may result from direct transmission between patients who shared a room and bathroom, acquisition from a common hospital source, or transmission from an unsampled intermediate. We also identify multiple patients with identical strains of species commonly found in commercial probiotics, including Lactobacillus rhamnosus and Streptococcus thermophilus. In summary, our findings indicate that sharing of identical pathogens between the gut microbiomes of multiple patients is a rare phenomenon. Furthermore, the observed potential transmission of commensal, immunomodulatory microbes suggests that exposure to other humans may contribute to microbiome reassembly post-HCT.


Subject(s)
Bacteria/metabolism , Bacterial Infections/transmission , Gastrointestinal Microbiome , Hospitalization , Adult , Aged , Anti-Bacterial Agents/pharmacology , Cross Infection/microbiology , Cross Infection/transmission , Drug Resistance, Microbial/drug effects , Drug Resistance, Microbial/genetics , Enterococcus faecium/drug effects , Enterococcus faecium/isolation & purification , Escherichia coli/drug effects , Escherichia coli/isolation & purification , Female , Gastrointestinal Microbiome/drug effects , Hematopoietic Stem Cell Transplantation , Hospitals , Humans , Length of Stay , Male , Metagenome/genetics , Metagenomics , Middle Aged , Phylogeny , Probiotics , Sequence Analysis, DNA , Time Factors
4.
Front Immunol ; 12: 774018, 2021.
Article in English | MEDLINE | ID: mdl-34925344

ABSTRACT

The epidermis constitutes a continuous external layer covering the body, offering protection against bacteria, the most abundant living organisms that come into contact with this barrier. The epidermis is heavily colonized by commensal bacterial organisms that help protect against pathogenic bacteria. The highly regulated and dynamic interaction between the epidermis and commensals involves the host's production of nutritional factors promoting bacterial growth together to chemical and immunological bacterial inhibitors. Signal trafficking ensures the system's homeostasis; conditions that favor colonization by pathogens frequently foster commensal growth, thereby increasing the bacterial population size and inducing the skin's antibacterial response, eliminating the pathogens and re-establishing the normal density of commensals. The microecological conditions of the epidermis favors Gram-positive organisms and are unsuitable for long-term Gram-negative colonization. However, the epidermis acts as the most important host-to-host transmission platform for bacteria, including those that colonize human mucous membranes. Bacteria are frequently shared by relatives, partners, and coworkers. The epidermal bacterial transmission platform of healthcare workers and visitors can contaminate hospitalized patients, eventually contributing to cross-infections. Epidermal transmission occurs mostly via the hands and particularly through fingers. The three-dimensional physical structure of the epidermis, particularly the fingertips, which have frictional ridges, multiplies the possibilities for bacterial adhesion and release. Research into the biology of bacterial transmission via the hands is still in its infancy; however, tribology, the science of interacting surfaces in relative motion, including friction, wear and lubrication, will certainly be an important part of it. Experiments on finger-to-finger transmission of microorganisms have shown significant interindividual differences in the ability to transmit microorganisms, presumably due to genetics, age, sex, and the gland density, which determines the physical, chemical, adhesive, nutritional, and immunological status of the epidermal surface. These studies are needed to optimize interventions and strategies for preventing the hand transmission of microorganisms.


Subject(s)
Bacterial Infections/transmission , Epidermis/microbiology , Bacteria/growth & development , Epidermis/immunology , Fingers/microbiology , Hand/microbiology , Humans , Microbiota
5.
PLoS One ; 16(12): e0258290, 2021.
Article in English | MEDLINE | ID: mdl-34914704

ABSTRACT

We studied farmworker practices and beliefs potentially contributing to transmission of bacteria and their associated antibiotic resistance genes (ARGs) among animals and farm workers to identify potential behavioral interventions to reduce the risk of bacterial transmission. Ten focus groups were conducted on eight Wisconsin dairy farms to assess potentially high-risk practices and farmworker knowledge and experiences with antibiotic use and resistance using the Systems Engineering in Patient Safety (SEIPS) framework. Farmworkers were asked to describe common on-farm tasks and the policies guiding these practices. We found workers demonstrated knowledge of the role of antibiotic stewardship in preventing the spread of ARGs. Worker knowledge of various forms of personal protective equipment was higher for workers who commonly reported glove-use. Additionally, workers knowledge regarding the importance of reducing ARG transmission varied but was higher than we had hypothesized. Programs to reduce ARG spread on dairy farms should focus on proper hand hygiene and personal protective equipment use at the level of knowledge, beliefs, and practices.


Subject(s)
Anti-Bacterial Agents , Bacterial Infections , Dairying , Drug Resistance, Bacterial , Farmers , Farms , Health Knowledge, Attitudes, Practice , Animals , Cattle , Female , Male , Anti-Bacterial Agents/therapeutic use , Bacterial Infections/prevention & control , Bacterial Infections/transmission , Bacterial Infections/veterinary , Wisconsin
6.
Microbiol Spectr ; 9(3): e0087221, 2021 12 22.
Article in English | MEDLINE | ID: mdl-34878304

ABSTRACT

Owing to their significant impact on children's long-term health, familial factors in the microbiomes of children have attracted increasing attention. However, the mechanism underlying microbiome transmission across generations remains unclear. A significantly lower alpha diversity was observed in the gut flora of children than in the gut flora of parents and grandparents; the alpha diversity of oral and skin microbiota was relatively higher in children than in their predecessors. Gut, oral, and skin microbiome was more similar between family members than between unrelated individuals. Meanwhile, 55.05%, 61.09%, and 76.73% of amplicon sequence variants (ASVs) in children's gut, oral, and skin microbiomes, respectively, were transmitted from all family members. Among these, the most transmissible ASVs belonged to Methylophilaceae, Solimonadaceae, Neisseriaceae, and Burkholderiaceae, which were defined as "putative familial transmissible bacteria." Furthermore, we found that the time spent with parents/grandparents and children's dietary preferences were important factors that influenced the proportion of the transmissible microbiome. Moreover, the majority of transmissible ASVs (85.06%), especially those of Ruminococcaceae and Lachnospiraceae, were significantly associated with the immune indices, such as CD3+, CD4+, CD8+, IgG, and IgA. IMPORTANCE Our study revealed that the children's microbiota was partially transmitted from their family members and specific putative transmissible ASVs were associated with the immune system of children. These findings suggest that home life plays a key role in the shaping of young children's microbiomes and has long-term health benefits.


Subject(s)
Bacteria/classification , Bacterial Infections/transmission , Gastrointestinal Microbiome/physiology , Mouth/microbiology , Skin/microbiology , Adult , Antibodies, Bacterial/blood , Bacteria/isolation & purification , Bacterial Infections/microbiology , Bacterial Load , Child , Child, Preschool , Grandparents , Home Environment , Humans , Middle Aged , Parents
8.
Biochim Biophys Acta Mol Basis Dis ; 1867(12): 166264, 2021 12 01.
Article in English | MEDLINE | ID: mdl-34481867

ABSTRACT

The molecular evolution of life on earth along with changing environmental, conditions has rendered mankind susceptible to endemic and pandemic emerging infectious diseases. The effects of certain systemic viral and bacterial infections on morbidity and mortality are considered as examples of recent emerging infections. Here we will focus on three examples of infections that are important in pregnancy and early childhood: SARS-CoV-2 virus, Zika virus, and Mycoplasma species. The basic structural characteristics of these infectious agents will be examined, along with their general pathogenic mechanisms. Coronavirus infections, such as caused by the SARS-CoV-2 virus, likely evolved from zoonotic bat viruses to infect humans and cause a pandemic that has been the biggest challenge for humanity since the Spanish Flu pandemic of the early 20th century. In contrast, Zika Virus infections represent an expanding infectious threat in the context of global climate change. The relationship of these infections to pregnancy, the vertical transmission and neurological sequels make these viruses highly relevant to the topics of this special issue. Finally, mycoplasmal infections have been present before mankind evolved, but they were rarely identified as human pathogens until recently, and they are now recognized as important coinfections that are able to modify the course and prognosis of various infectious diseases and other chronic illnesses. The infectious processes caused by these intracellular microorganisms are examined as well as some general aspects of their pathogeneses, clinical presentations, and diagnoses. We will finally consider examples of treatments that have been used to reduce morbidity and mortality of these infections and discuss briefly the current status of vaccines, in particular, against the SARS-CoV-2 virus. It is important to understand some of the basic features of these emerging infectious diseases and the pathogens involved in order to better appreciate the contributions of this special issue on how infectious diseases can affect human pregnancy, fetuses and neonates.


Subject(s)
Bacterial Infections/prevention & control , Communicable Diseases/transmission , Virus Diseases/prevention & control , Bacterial Infections/history , Bacterial Infections/transmission , COVID-19/metabolism , COVID-19/prevention & control , Communicable Diseases/virology , Female , History, 19th Century , History, 20th Century , History, 21st Century , Humans , Infant, Newborn , Infectious Disease Transmission, Vertical/history , Mycoplasma/pathogenicity , Mycoplasma Infections/metabolism , Mycoplasma Infections/prevention & control , Pregnancy , Pregnant Women , SARS-CoV-2/pathogenicity , Virus Diseases/history , Virus Diseases/transmission , Zika Virus/pathogenicity , Zika Virus Infection/metabolism , Zika Virus Infection/prevention & control
9.
Infect Dis Clin North Am ; 35(3): 789-802, 2021 09.
Article in English | MEDLINE | ID: mdl-34362544

ABSTRACT

A great clinical microbiology laboratory supporting a great infection prevention program requires focusing on the following services: rapid and accurate identification of pathogens associated with health care-associated infections; asymptomatic surveillance for health care-acquired pathogens before infections arise; routine use of broad and flexible antimicrobial susceptibility testing to direct optimal therapy; implementation of epidemiologic tracking tools to identify outbreaks; development of clear result communication with interpretative comments for clinicians. These goals are best realized in a collaborative relationship with the infection prevention program so that both can benefit from the shared priorities of providing the best patient care.


Subject(s)
Bacterial Infections/prevention & control , Cross Infection/prevention & control , Disease Outbreaks/prevention & control , Infection Control/methods , Laboratories, Hospital , Bacterial Infections/transmission , Humans , Laboratories/organization & administration
10.
JAMA Netw Open ; 4(8): e2119212, 2021 08 02.
Article in English | MEDLINE | ID: mdl-34347060

ABSTRACT

Importance: Multidrug-resistant organisms (MDROs) can spread across health care facilities in a region. Because of limited resources, certain interventions can be implemented in only some facilities; thus, decision-makers need to evaluate which interventions may be best to implement. Objective: To identify a group of target facilities and assess which MDRO intervention would be best to implement in the Shared Healthcare Intervention to Eliminate Life-threatening Dissemination of MDROs in Orange County, a large regional public health collaborative in Orange County, California. Design, Setting, and Participants: An agent-based model of health care facilities was developed in 2016 to simulate the spread of methicillin-resistant Staphylococcus aureus (MRSA) and carbapenem-resistant Enterobacteriaceae (CRE) for 10 years starting in 2010 and to simulate the use of various MDRO interventions for 3 years starting in 2017. All health care facilities (23 hospitals, 5 long-term acute care hospitals, and 74 nursing homes) serving adult inpatients in Orange County, California, were included, and 42 target facilities were identified via network analyses. Exposures: Increasing contact precaution effectiveness, increasing interfacility communication about patients' MDRO status, and performing decolonization using antiseptic bathing soap and a nasal product in a specific group of target facilities. Main Outcomes and Measures: MRSA and CRE prevalence and number of new carriers (ie, transmission events). Results: Compared with continuing infection control measures used in Orange County as of 2017, increasing contact precaution effectiveness from 40% to 64% in 42 target facilities yielded relative reductions of 0.8% (range, 0.5%-1.1%) in MRSA prevalence and 2.4% (range, 0.8%-4.6%) in CRE prevalence in health care facilities countywide after 3 years, averting 761 new MRSA transmission events (95% CI, 756-765 events) and 166 new CRE transmission events (95% CI, 158-174 events). Increasing interfacility communication of patients' MDRO status to 80% in these target facilities produced no changes in the prevalence or transmission of MRDOs. Implementing decolonization procedures (clearance probability: 39% in hospitals, 27% in long-term acute care facilities, and 3% in nursing homes) yielded a relative reduction of 23.7% (range, 23.5%-23.9%) in MRSA prevalence, averting 3515 new transmission events (95% CI, 3509-3521 events). Increasing the effectiveness of antiseptic bathing soap to 48% yielded a relative reduction of 39.9% (range, 38.5%-41.5%) in CRE prevalence, averting 1435 new transmission events (95% CI, 1427-1442 events). Conclusions and Relevance: The findings of this study highlight the ways in which modeling can inform design of regional interventions and suggested that decolonization would be the best strategy for the Shared Healthcare Intervention to Eliminate Life-threatening Dissemination of MDROs in Orange County.


Subject(s)
Bacterial Infections/prevention & control , Bacterial Infections/transmission , Disease Transmission, Infectious/prevention & control , Drug Resistance, Multiple, Bacterial , Practice Guidelines as Topic , Skilled Nursing Facilities/standards , California , Humans
11.
Pan Afr Med J ; 38: 410, 2021.
Article in French | MEDLINE | ID: mdl-34381554

ABSTRACT

INTRODUCTION: synanthropic flies are sometimes involved in the transmission of diarrheal diseases as mechanical vectors of pathogenic bacteria. The purpose of this study was to assess the diversity of synanthropic flies and to determine their potential involvement in the transmission of diarrheal diseases in the city of Maroua. METHODS: fly catching sessions were carried out per season in 12 wards, in five different sites and in three moments of the day, corresponding to the different daily sunshine hours. Multiple keys for the identification of diptera and of microbiological analyzes in the laboratory were used to estimate the biodiversity and the portage of microorganisms by the synanthropic flies. We carried out an ecological and statistical analyses of collected data. RESULTS: eight species of synanthropic flies belonging to four families were identified in the city of Maroua and the distribution of these species varied according to the seasons, sites and moment of the day (p<0.05). Musca domestica and Chrysomya putoria were the most numerous species detected in the sites where the activities of agri-food processing and livestock were intense, notably Hardé, Pont-vert, Doualaré, Kongola and Makabaye. Escherichia coli was more involved than Salmonella spp.in the transmission of diarrheal diseases and the portage of bacteria by synanthropic flies was abundance-dependent. CONCLUSION: the diversity of synanthropic flies varies as a function of anthropogenic activities, season of the year and moment of the day. These flies are important potential mechanical vectors of fecal pathogenic bacteria in Maroua.


Subject(s)
Bacteria/isolation & purification , Diarrhea/epidemiology , Diptera/microbiology , Insect Vectors , Animals , Bacterial Infections/epidemiology , Bacterial Infections/microbiology , Bacterial Infections/transmission , Cameroon/epidemiology , Diarrhea/microbiology , Humans
12.
Sci Rep ; 11(1): 13858, 2021 07 05.
Article in English | MEDLINE | ID: mdl-34226601

ABSTRACT

The disease caused by Enterococcus lacertideformus is multisystemic and ultimately fatal. Since its emergence, the bacterium has significantly impacted the captive breeding programs of the extinct in the wild Christmas Island Lister's gecko (Lepidodactylus listeri) and blue-tailed skink (Cryptoblepharus egeriae). The bacterium's pathogenicity, inability to grow in-vitro, and occurrence beyond the confines of Christmas Island necessitated the development of an experimental infection and treatment model. Asian house geckos (Hemidactylus frenatus) were challenged with a single dose of E. lacertideformus inoculum either by mouth, application to mucosal abrasion or skin laceration, subcutaneous injection, coelomic injection, or via co-housing with an infected gecko. Five healthy geckos acted as controls. Each transmission route resulted in disease in at least 40% (n = 2) geckos, expanding to 100% (n = 5) when E. lacertideformus was applied to skin laceration and mucosal abrasion groups. Incubation periods post-infection ranged between 54 and 102 days. To determine the efficacy of antibiotic treatment, infected geckos were divided into six groups (enrofloxacin 10 mg/kg, per os (PO), every 24 h (q24), amoxicillin-clavulanic acid 10 mg/kg, PO, q24, enrofloxacin 10 mg/kg combined with amoxicillin-clavulanic acid 10 mg/kg, PO, q24, rifampicin 15 mg/kg, PO, q24, clarithromycin 15 mg/kg, PO, q24, and untreated controls) for 21 days. Response to treatment was assessed by the change in lesion size, bacterial dissemination, and histological evidence of a host immune response. Irrespective of the antibiotic given, histology revealed that geckos inoculated by skin laceration were observed to have more extensive disease spread throughout the animal's body compared to other inoculation routes. The reduction in the average surface area of gross lesions was 83.6% for geckos treated with enrofloxacin, followed by the combination therapy amoxicillin-clavulanic acid and enrofloxacin (62.4%), amoxicillin-clavulanic acid (58.2%), rifampicin (45.5%), and clarithromycin (26.5%). Lesions in geckos untreated with antibiotics increased in size between 100 and 300%. In summary, enrofloxacin and amoxicillin-clavulanic acid show promising properties for the treatment of E. lacertideformus infection in geckos. The Asian house gecko E. lacertideformus infection model therefore provides foundational findings for the development of effective therapeutic treatment protocols aimed at conserving the health of infected and at-risk reptiles.


Subject(s)
Anti-Bacterial Agents/pharmacology , Bacterial Infections/microbiology , Enterococcus/pathogenicity , Lizards/microbiology , Amoxicillin-Potassium Clavulanate Combination/pharmacology , Animals , Bacterial Infections/drug therapy , Bacterial Infections/transmission , Clarithromycin/pharmacology , Disease Models, Animal , Enrofloxacin/pharmacology , Humans
13.
PLoS One ; 16(6): e0250854, 2021.
Article in English | MEDLINE | ID: mdl-34086691

ABSTRACT

The use of personal protective equipment (PPE) has been considered the most effective way to avoid the contamination of healthcare workers by different microorganisms, including SARS-CoV-2. A spray disinfection technology (chamber) was developed, and its efficacy in instant decontamination of previously contaminated surfaces was evaluated in two exposure times. Seven test microorganisms were prepared and inoculated on the surface of seven types of PPE (respirator mask, face shield, shoe, glove, cap, safety glasses and lab coat). The tests were performed on previously contaminated PPE using a manikin with a motion device for exposure to the chamber with biocidal agent (sodium hypochlorite) for 10 and 30s. In 96.93% of the experimental conditions analyzed, the percentage reduction was >99% (the number of viable cells found on the surface ranged from 4.3x106 to <10 CFU/mL). The samples of E. faecalis collected from the glove showed the lowest percentages reduction, with 86.000 and 86.500% for exposure times of 10 and 30 s, respectively. The log10 reduction values varied between 0.85 log10 (E. faecalis at 30 s in glove surface) and 9.69 log10 (E. coli at 10 and 30 s in lab coat surface). In general, E. coli, S. aureus, C. freundii, P. mirabilis, C. albicans and C. parapsilosis showed susceptibility to the biocidal agent under the tested conditions, with >99% reduction after 10 and 30s, while E. faecalis and P. aeruginosa showed a lower susceptibility. The 30s exposure time was more effective for the inactivation of the tested microorganisms. The results show that the spray disinfection technology has the potential for instant decontamination of PPE, which can contribute to an additional barrier for infection control of healthcare workers in the hospital environment.


Subject(s)
COVID-19/prevention & control , Decontamination , Infection Control , Infectious Disease Transmission, Patient-to-Professional/prevention & control , Protective Clothing , Respiratory Protective Devices , SARS-CoV-2 , Bacteria , Bacterial Infections/epidemiology , Bacterial Infections/prevention & control , Bacterial Infections/transmission , COVID-19/epidemiology , COVID-19/transmission , Decontamination/instrumentation , Decontamination/methods , Humans
15.
Lancet Digit Health ; 3(6): e360-e370, 2021 06.
Article in English | MEDLINE | ID: mdl-34045002

ABSTRACT

BACKGROUND: Streptococcus pneumoniae, Haemophilus influenzae, and Neisseria meningitidis, which are typically transmitted via respiratory droplets, are leading causes of invasive diseases, including bacteraemic pneumonia and meningitis, and of secondary infections subsequent to post-viral respiratory disease. The aim of this study was to investigate the incidence of invasive disease due to these pathogens during the early months of the COVID-19 pandemic. METHODS: In this prospective analysis of surveillance data, laboratories in 26 countries and territories across six continents submitted data on cases of invasive disease due to S pneumoniae, H influenzae, and N meningitidis from Jan 1, 2018, to May, 31, 2020, as part of the Invasive Respiratory Infection Surveillance (IRIS) Initiative. Numbers of weekly cases in 2020 were compared with corresponding data for 2018 and 2019. Data for invasive disease due to Streptococcus agalactiae, a non-respiratory pathogen, were collected from nine laboratories for comparison. The stringency of COVID-19 containment measures was quantified using the Oxford COVID-19 Government Response Tracker. Changes in population movements were assessed using Google COVID-19 Community Mobility Reports. Interrupted time-series modelling quantified changes in the incidence of invasive disease due to S pneumoniae, H influenzae, and N meningitidis in 2020 relative to when containment measures were imposed. FINDINGS: 27 laboratories from 26 countries and territories submitted data to the IRIS Initiative for S pneumoniae (62 837 total cases), 24 laboratories from 24 countries submitted data for H influenzae (7796 total cases), and 21 laboratories from 21 countries submitted data for N meningitidis (5877 total cases). All countries and territories had experienced a significant and sustained reduction in invasive diseases due to S pneumoniae, H influenzae, and N meningitidis in early 2020 (Jan 1 to May 31, 2020), coinciding with the introduction of COVID-19 containment measures in each country. By contrast, no significant changes in the incidence of invasive S agalactiae infections were observed. Similar trends were observed across most countries and territories despite differing stringency in COVID-19 control policies. The incidence of reported S pneumoniae infections decreased by 68% at 4 weeks (incidence rate ratio 0·32 [95% CI 0·27-0·37]) and 82% at 8 weeks (0·18 [0·14-0·23]) following the week in which significant changes in population movements were recorded. INTERPRETATION: The introduction of COVID-19 containment policies and public information campaigns likely reduced transmission of S pneumoniae, H influenzae, and N meningitidis, leading to a significant reduction in life-threatening invasive diseases in many countries worldwide. FUNDING: Wellcome Trust (UK), Robert Koch Institute (Germany), Federal Ministry of Health (Germany), Pfizer, Merck, Health Protection Surveillance Centre (Ireland), SpID-Net project (Ireland), European Centre for Disease Prevention and Control (European Union), Horizon 2020 (European Commission), Ministry of Health (Poland), National Programme of Antibiotic Protection (Poland), Ministry of Science and Higher Education (Poland), Agencia de Salut Pública de Catalunya (Spain), Sant Joan de Deu Foundation (Spain), Knut and Alice Wallenberg Foundation (Sweden), Swedish Research Council (Sweden), Region Stockholm (Sweden), Federal Office of Public Health of Switzerland (Switzerland), and French Public Health Agency (France).


Subject(s)
Bacterial Infections/epidemiology , COVID-19 , Respiratory Tract Infections/epidemiology , Bacterial Infections/transmission , COVID-19/prevention & control , Haemophilus influenzae , Humans , Incidence , Interrupted Time Series Analysis , Neisseria meningitidis , Population Surveillance , Prospective Studies , Public Health Practice , Streptococcus agalactiae , Streptococcus pneumoniae
16.
mBio ; 12(3)2021 05 18.
Article in English | MEDLINE | ID: mdl-34006664

ABSTRACT

Pathogen transmission is a key point not only for infection control and public health interventions but also for understanding the selective pressures in pathogen evolution. The "success" of a pathogen lies not in its ability to cause signs and symptoms of illness but in its ability to be shed from the initial hosts, survive between hosts, and then establish infection in a new host. Recent insights have shown the importance of the interaction between the pathogen and both the commensal microbiome and coinfecting pathogens on shedding, environmental survival, and acquisition of infection. Pathogens have evolved in the context of cooperation and competition with other microbes, and the roles of these cooperations and competitions in transmission can inform novel preventative and therapeutic strategies.IMPORTANCE Transmission of pathogens from one host to another is an essential event in pathogenesis. Transmission is driven by factors intrinsic to the host and to the pathogen. In addition, transmission is altered by interactions of the pathogen with the commensal microbiota of the host and coinfecting pathogens. Recent insights into these interactions have shown both enhanced and reduced transmission efficiencies depending on the makeup of the polymicrobial community. This review will discuss polymicrobial interactions during shedding from the initial host, time in the environment, and acquisition by the new host.


Subject(s)
Bacteria/pathogenicity , Bacterial Infections/transmission , Coinfection/microbiology , Host-Pathogen Interactions , Microbial Interactions , Animals , Bacterial Infections/microbiology , Humans , Microbiota
17.
Food Microbiol ; 98: 103768, 2021 Sep.
Article in English | MEDLINE | ID: mdl-33875204

ABSTRACT

Game birds may carry zoonotic bacteria in their intestines and transmit them to hunters through bird handling or through the handling and consumption of contaminated meat. In this study, the prevalence of foodborne bacteria was screened from game bird faeces and mallard breast meat using PCR. The sampling occurred in southern Finland from August to December during the hunting season. Isolates were characterized by multi-locus sequence typing. Mesophilic aerobic bacteria and Escherichia coli counts were used to assess the microbial contamination of mallard meat. In total, 100 woodpigeon (Columba palumbus), 101 pheasants (Phasianus colchicus), 110 mallards (Anas platyrhynchos), and 30 teals (Anas crecca) were screened during the hunting season. Additionally, 100 mallard breast meat samples were collected. Campylobacter and Listeria were commonly detected in the faeces and Listeria on mallard meat. L. monocytogenes of sequence types associated with human listeriosis were frequently found in game bird faeces and on mallard meat. Good hygiene during game bird handling, storing the game bird meat frozen, and proper heat treatment are important measures to minimize the health risk for hunters and consumers.


Subject(s)
Bacteria/isolation & purification , Bacterial Infections/microbiology , Bacterial Zoonoses/microbiology , Birds/microbiology , Foodborne Diseases/microbiology , Animals , Animals, Wild/classification , Animals, Wild/microbiology , Bacteria/classification , Bacteria/genetics , Bacterial Infections/metabolism , Bacterial Infections/transmission , Bacterial Zoonoses/metabolism , Bacterial Zoonoses/transmission , Birds/classification , Feces/microbiology , Finland , Food Contamination/analysis , Foodborne Diseases/metabolism , Humans , Meat/microbiology , Multilocus Sequence Typing
18.
J Infect Dev Ctries ; 15(2): 179-184, 2021 03 07.
Article in English | MEDLINE | ID: mdl-33690197

ABSTRACT

The rapid emergence of bacterial resistance worldwide is a serious problem, leading to many therapeutic failures and rendering inactive effective antibiotics currently used . This problem has recently been accelerated by conflicts and its related migration. The antibiotic resistance phenomenon is diffused in Syria with a high rate of multi drug resistance cases in gram negative and gram positive organisms during and after the Syrian crisis as a result of misprescribing and overprescribing of antibiotics. The inappropriate use of antibiotic plays an important role in resistance generation. Hence, big efforts are urgently needed by using phenotypic and genetic analysis of bacterial strains against antibiotics to increase characterization and identification of mutant resistant strains and find new strategies to control the spread of antimicrobial resistance infections. This review highlights the antibacterial resistance problem in Syria, showing its negative impact and presenting a sum of efforts that are urgently needed to overcome this problem.


Subject(s)
Bacteria/drug effects , Bacterial Infections/epidemiology , Drug Resistance, Multiple, Bacterial , Anti-Bacterial Agents/pharmacology , Bacteria/classification , Bacterial Infections/transmission , Global Health , Humans , Longitudinal Studies , Syria/epidemiology
19.
Folia Microbiol (Praha) ; 66(3): 293-302, 2021 Jun.
Article in English | MEDLINE | ID: mdl-33768506

ABSTRACT

Biofilm formation (BF) and production in the food processing industry (FPI) is a continual threat to food safety and quality. Various bacterial pathogens possess the ability to adhere and produce biofilms on stainless steel (SS) in the FPI due to flagella, curli, pili, fimbrial adhesins, extra polymeric substances, and surface proteins. The facilitating environmental conditions (temperature, pressure, variations in climatic conditions), SS properties (surface energy, hydrophobicity, surface roughness, topography), type of raw food materials, pre-processing, and processing conditions play a significant role in the enhancement of bacterial adhesion and favorable condition for BF. Furthermore, biofilm formers can tolerate different sanitizers and cleaning agents due to the constituents, concentration, contact time, bacterial cluster distribution, and composition of bacteria within the biofilm. Also, bacterial biofilms' ability to produce various endotoxins and exotoxins when consumed cause food infections and intoxications with serious health implications. It is thus crucial to understand BF's repercussions and develop effective interventions against these phenomena that make persistent pathogens difficult to remove in the food processing environment.


Subject(s)
Bacterial Physiological Phenomena , Biofilms , Food Handling , Food Microbiology , Stainless Steel , Bacterial Adhesion , Bacterial Infections/prevention & control , Bacterial Infections/transmission , Biofilms/growth & development , Disinfection , Food Handling/instrumentation , Food Handling/standards , Humans
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