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1.
Anal Biochem ; 616: 114088, 2021 03 01.
Article in English | MEDLINE | ID: mdl-33358938

ABSTRACT

Endosomal escape is considered a crucial barrier that needs to be overcome by integrin-mediated E. coli for gene delivery into mammalian cells. Bafilomycin, a potent inhibitor of the H+ proton pump commonly employed to lower endosomal pH, was evaluated as part of the E. coli protocol during delivery. We found an increase in green fluorescent protein expression up 6.9, 3.2, 5.0, 2.8, and 4.5 fold in HeLa, HEK-293, A549, HT1080, and MCF-7 respectively, compared to untreated cells. Our result showed for the first time that Inhibition of lysosomal V-ATPase enhances E. coli efficiency.


Subject(s)
Bacterial Proton-Translocating ATPases/antagonists & inhibitors , Escherichia coli/enzymology , Lysosomes/enzymology , Vacuolar Proton-Translocating ATPases/antagonists & inhibitors , Cell Line, Transformed , Cell Line, Tumor , Down-Regulation/drug effects , Escherichia coli/genetics , Genetic Vectors/metabolism , Green Fluorescent Proteins/biosynthesis , Homeostasis/drug effects , Humans , Hydrogen-Ion Concentration , Lysosomes/drug effects , Macrolides/pharmacology , Transfection/methods
2.
Angew Chem Int Ed Engl ; 59(32): 13295-13304, 2020 08 03.
Article in English | MEDLINE | ID: mdl-32337801

ABSTRACT

The F1 FO -ATP synthase is required for growth and viability of Mycobacterium tuberculosis and is a validated clinical target. A mycobacterium-specific loop of the enzyme's rotary γ subunit plays a role in the coupling of ATP synthesis within the enzyme complex. We report the discovery of a novel antimycobacterial, termed GaMF1, that targets this γ subunit loop. Biochemical and NMR studies show that GaMF1 inhibits ATP synthase activity by binding to the loop. GaMF1 is bactericidal and is active against multidrug- as well as bedaquiline-resistant strains. Chemistry efforts on the scaffold revealed a dynamic structure activity relationship and delivered analogues with nanomolar potencies. Combining GaMF1 with bedaquiline or novel diarylquinoline analogues showed potentiation without inducing genotoxicity or phenotypic changes in a human embryonic stem cell reporter assay. These results suggest that GaMF1 presents an attractive lead for the discovery of a novel class of anti-tuberculosis F-ATP synthase inhibitors.


Subject(s)
Bacterial Proteins/antagonists & inhibitors , Bacterial Proton-Translocating ATPases/antagonists & inhibitors , Diarylquinolines/pharmacology , Enzyme Inhibitors/pharmacology , Mycobacterium tuberculosis/drug effects , Benzamides/chemistry , Benzamides/pharmacology , Benzamides/toxicity , Drug Synergism , Embryonic Stem Cells/drug effects , Enzyme Inhibitors/chemistry , Enzyme Inhibitors/toxicity , Humans , Microbial Sensitivity Tests , Molecular Structure , Mycobacterium tuberculosis/enzymology , Pyrimidines/chemistry , Pyrimidines/pharmacology , Pyrimidines/toxicity , Structure-Activity Relationship
3.
Mar Drugs ; 17(2)2019 Feb 12.
Article in English | MEDLINE | ID: mdl-30759807

ABSTRACT

The cyclic peptides portoamides produced by the cyanobacterium Phormidium sp. LEGE 05292 were previously isolated and their ability to condition microcommunities by allelopathic effect was described. These interesting bioactive properties are, however, still underexplored as their biotechnological applications may be vast. This study aims to investigate the antifouling potential of portoamides, given that a challenge in the search for new environmentally friendly antifouling products is to find non-toxic natural alternatives with the ability to prevent colonization of different biofouling species, from bacteria to macroinvertebrates. A multi-bioassay approach was applied to assess portoamides antifouling properties, marine ecotoxicity and molecular mode of action. Results showed high effectiveness in the prevention of mussel larvae settlement (EC50 = 3.16 µM), and also bioactivity towards growth and biofilm disruption of marine biofouling bacterial strains, while not showing toxicity towards both target and non-target species. Antifouling molecular targets in mussel larvae include energy metabolism modifications (failure in proton-transporting ATPases activity), structural alterations of the gills and protein and gene regulatory mechanisms. Overall, portoamides reveal a broad-spectrum bioactivity towards diverse biofouling species, including a non-toxic and reversible effect towards mussel larvae, showing potential to be incorporated as an active ingredient in antifouling coatings.


Subject(s)
Amides/pharmacology , Biofilms/drug effects , Biofouling/prevention & control , Biological Products/pharmacology , Cyanobacteria/metabolism , Animals , Anti-Bacterial Agents/pharmacology , Artemia , Bacterial Proton-Translocating ATPases/antagonists & inhibitors , Biological Assay/methods , Cyanobacteria/chemistry , Dose-Response Relationship, Drug , Energy Metabolism/drug effects , Gene Expression Regulation/drug effects , Gills/drug effects , Larva , Microalgae/drug effects , Mytilus , Quorum Sensing/drug effects
4.
J Food Sci ; 84(1): 138-146, 2019 Jan.
Article in English | MEDLINE | ID: mdl-30569590

ABSTRACT

Many novel bacterial targets and natural inhibitors of enzymes are currently being considered to overcome antibiotic resistance of Escherichia coli. Hence, in this study, 20 essential oil constituents were screened for their potential inhibitory effect on E. coli ATP synthase. This enzyme is involved in the hydrolysis of ATP into ADP and inorganic phosphate (Pi). First, E. coli membrane ATP synthase was isolated via cell lysis. A spectrophotometric method was optimized to quantify the released phosphate from ATP hydrolysis in order to follow the enzymatic activity. The method was validated by determining the kinetic parameters of this reaction (Km = 144.66 µM and Vmax = 270.27 µM/min), and through the inhibition assays of ATP synthase using three reference inhibitors, thymoquinone (half maximal inhibitory concentration [IC50 ] = 50.93 µM), resveratrol (maximum inhibition of 40%), and quercetin (IC50 = 29.01 µM). Among the studied essential oil components, α-terpinene was the most potent inhibitor (IC50 = 19.74 µM) followed by ß-pinene, isoeugenol, eugenol, and estragole.


Subject(s)
Bacterial Proton-Translocating ATPases/antagonists & inhibitors , Escherichia coli/drug effects , Oils, Volatile/analysis , Adenosine Triphosphate/metabolism , Bacterial Proton-Translocating ATPases/metabolism , Escherichia coli/enzymology , Hydrogen-Ion Concentration , Hydrolysis , Inhibitory Concentration 50 , Phosphates/analysis
5.
Tuberculosis (Edinb) ; 108: 56-63, 2018 01.
Article in English | MEDLINE | ID: mdl-29523328

ABSTRACT

A limited number of anti-tuberculosis drug candidates with novel mode of action have entered clinical trials in recent years. ATP synthase is one such validated drug target which has yielded a drug recently. The aim of this study was to identify the novel chemical scaffolds targeting the Mycobacterium tuberculosis (M. tuberculosis) ATP synthase. In this study, inverted membrane vesicles of Mycobacterium smegmatis were prepared to establish luciferin based ATP estimation assay. This assay was used to screen 700 compounds which were earlier found to be active on the whole cell of M. tuberculosis. Antibacterial activity of hits against various susceptible and drug-resistant strains of M. tuberculosis was evaluated using the microplate alamar blue assay and their cytotoxicity was also determined to select the safe compounds for further study. Screening of 700 compounds resulted in the identification of two compounds (5228485 and 5220632) exhibiting an IC50 of 0.32 and 4.0 µg/ml respectively. Both compounds showed excellent anti-TB activity (MIC of 0.5-2.0 µg/ml against Mtb H37Rv) and low cytotoxicity in human cell line and sub-mitochondrial particles. The three-dimensional structure of M. tuberculosis ATPase was predicted using in-silico approach and docking studies were performed with the active compounds. The interaction between compounds and bacterial ATP synthase was confirmed by molecular docking analysis. In conclusion screening of compound library has resulted in the identification of two novel chemical scaffolds targeting mycobacterial ATP synthase.


Subject(s)
Antitubercular Agents/pharmacology , Bacterial Proton-Translocating ATPases/antagonists & inhibitors , Energy Metabolism/drug effects , Enzyme Inhibitors/pharmacology , Molecular Docking Simulation , Mycobacterium smegmatis/drug effects , Mycobacterium tuberculosis/drug effects , Small Molecule Libraries , Adenosine Triphosphate/biosynthesis , Animals , Antitubercular Agents/chemistry , Antitubercular Agents/metabolism , Bacterial Proton-Translocating ATPases/metabolism , Binding Sites , Dose-Response Relationship, Drug , Drug Resistance, Bacterial , Enzyme Inhibitors/chemistry , Enzyme Inhibitors/metabolism , Hep G2 Cells , Humans , Mice , Microbial Sensitivity Tests , Mycobacterium smegmatis/enzymology , Mycobacterium tuberculosis/enzymology , Protein Binding , Protein Conformation , Time Factors
6.
Article in English | MEDLINE | ID: mdl-28807917

ABSTRACT

Pulmonary infections caused by Mycobacterium abscessus are emerging as a global threat, especially in cystic fibrosis patients. Further intensifying the concern of M. abscessus infection is the recent evidence of human-to-human transmission of the infection. M. abscessus is a naturally multidrug-resistant fast-growing pathogen for which pharmacological options are limited. Repurposing antitubercular drugs represents an attractive option for the development of chemotherapeutic alternatives against M. abscessus infections. Bedaquiline (BDQ), an ATP synthase inhibitor, has recently been approved for the treatment of multidrug-resistant tuberculosis. Herein, we show that BDQ has a very low MIC against a vast panel of clinical isolates. Despite being bacteriostatic in vitro, BDQ was highly efficacious in a zebrafish model of M. abscessus infection. Remarkably, a very short period of treatment was sufficient to protect the infected larvae from M. abscessus-induced killing. This was corroborated with reduced numbers of abscesses and cords, considered to be major pathophysiological signs in infected zebrafish. Mode-of-action studies revealed that BDQ triggered a rapid depletion of ATP in M. abscessusin vitro, consistent with the drug targeting the FoF1 ATP synthase. Importantly, despite a failure to select in vitro for spontaneous mutants that are highly resistant to BDQ, the transfer of single nucleotide polymorphisms leading to D29V or A64P substitutions in atpE conferred high resistance, thus resolving the target of BDQ in M. abscessus Overall, this study indicates that BDQ is active against M. abscessusin vitro and in vivo and should be considered for clinical use against the difficult-to-manage M. abscessus pulmonary infections.


Subject(s)
Antitubercular Agents/pharmacology , Bacterial Proton-Translocating ATPases/antagonists & inhibitors , Diarylquinolines/pharmacology , Mycobacterium abscessus/drug effects , Adenosine Triphosphate/metabolism , Animals , Bacterial Proton-Translocating ATPases/genetics , Bacterial Proton-Translocating ATPases/metabolism , Drug Resistance, Bacterial/drug effects , Drug Resistance, Bacterial/genetics , Microbial Sensitivity Tests , Mycobacterium Infections, Nontuberculous/drug therapy , Mycobacterium Infections, Nontuberculous/microbiology , Mycobacterium abscessus/metabolism , Polymorphism, Single Nucleotide , Zebrafish/microbiology
7.
Rev Mal Respir ; 32(8): 784-90, 2015 Oct.
Article in French | MEDLINE | ID: mdl-26169235

ABSTRACT

Incidence of pulmonary tuberculosis, a contagious infectious disease, decreases in France with 4934 reported cases in 2013. Tuberculosis remains a global health problem as smear is positive in only 50% cases and culture methods require time. In such a context, genotypic diagnostic tools such as Xpert® MTB/RIF gained interest. This rapid and simple-to-use nucleic acid amplification test allows a diagnosis in two hours and prevents further invasive investigations in pulmonary and mediastinal tuberculosis. Because of its low sensitivity, it cannot be used in pleural fluid. Indirect immunologic tests are of no use to diagnose active tuberculosis disease. Another current area of interest is the emergence of resistant tuberculosis. In France, approximately 100 cases of multidrug resistant tuberculosis and a few extensively drug resistant tuberculosis have been reported in 2014. Even though these forms of tuberculosis are imported, it is crucial to identify hazardous situations and to optimize care of these patients. Xpert® MTB/RIF is again of marked interest here as it detects rifampin resistance with a 95% sensitivity and a 98% specificity. Interpretation of genotypic tests such as Genotype® MTBDR or Xpert® MTB/RIF depends on known detected mutations, although they do not always have a clinical or phenotypic expression. In multidrug resistant tuberculosis, the new drug bedaquiline obtained approval for temporarily use in combination with other molecules when there is no other treatment option. Results of bedaquiline are encouraging but adverse events like QT prolongation or the development of new specific drug resistance should convince clinicians to use it with caution.


Subject(s)
Tuberculosis/diagnosis , Antitubercular Agents/pharmacology , Antitubercular Agents/therapeutic use , Bacterial Proteins/antagonists & inhibitors , Bacterial Proton-Translocating ATPases/antagonists & inhibitors , DNA, Bacterial/genetics , DNA, Bacterial/isolation & purification , Diarylquinolines/adverse effects , Diarylquinolines/therapeutic use , France/epidemiology , Genotyping Techniques , Humans , Incidence , Interferon-gamma Release Tests , Microbial Sensitivity Tests , Mycobacterium tuberculosis/genetics , Mycobacterium tuberculosis/isolation & purification , Nucleic Acid Amplification Techniques , Phenotype , Predictive Value of Tests , Rifampin/pharmacology , Sensitivity and Specificity , Sputum/microbiology , Tuberculin Test , Tuberculosis/drug therapy , Tuberculosis/epidemiology , Tuberculosis, Multidrug-Resistant/diagnosis , Tuberculosis, Multidrug-Resistant/drug therapy
8.
Int J Biol Macromol ; 70: 241-5, 2014 Sep.
Article in English | MEDLINE | ID: mdl-25010476

ABSTRACT

Curcumin, a dietary phytopolyphenol isolated from a perennial herb (Curcuma longa), is a well-known compound effective for bacterial infections and tumors, and also as an antioxidant. In this study, we report the inhibitory effects of curcumin and its analogs on the Escherichia coli ATP synthase F1 sector. A structure-activity relationship study indicated the importance of 4'-hydroxy groups and a ß-diketone moiety for the inhibition. The 3'-demethoxy analog (DMC) inhibited F1 more strongly than curcumin did. Furthermore, these compounds inhibited E. coli growth through oxidative phosphorylation, consistent with their effects on ATPase activity. These results suggest that the two compounds affected bacterial growth through inhibition of ATP synthase. Derivatives including bis(arylmethylidene)acetones (C5 curcuminoids) exhibited only weak activity toward ATPase and bacterial growth.


Subject(s)
Bacterial Proton-Translocating ATPases/antagonists & inhibitors , Curcumin/analogs & derivatives , Curcumin/pharmacology , Escherichia coli/drug effects , Escherichia coli/enzymology , Bacterial Proton-Translocating ATPases/chemistry , Bacterial Proton-Translocating ATPases/metabolism , Curcumin/chemistry , Dose-Response Relationship, Drug , Enzyme Activation/drug effects , Escherichia coli/growth & development , Oxidative Phosphorylation/drug effects , Structure-Activity Relationship
9.
Mol Microbiol ; 92(5): 973-84, 2014 Jun.
Article in English | MEDLINE | ID: mdl-24707994

ABSTRACT

In the c-ring rotor of ATP synthases ions are shuttled across the membrane during ATP synthesis by a unique rotary mechanism. We investigated characteristics of the c-ring from the alkaliphile Bacillus pseudofirmus OF4 with respect to evolutionary adaptations to operate with protons at high environmental pH. The X-ray structures of the wild-type c13 ring at pH 9.0 and a 'neutralophile-like' mutant (P51A) at pH 4.4, at 2.4 and 2.8 Šresolution, respectively, reveal a dependency of the conformation and protonation state of the proton-binding glutamate (E(54) ) on environmental hydrophobicity. Faster labelling kinetics with the inhibitor dicyclohexylcarbodiimide (DCCD) demonstrate a greater flexibility of E(54) in the mutant due to reduced water occupancy within the H(+) binding site. A second 'neutralophile-like' mutant (V21N) shows reduced growth at high pH, which is explained by restricted conformational freedom of the mutant's E(54) carboxylate. The study directly connects subtle structural adaptations of the c-ring ion binding site to in vivo effects of alkaliphile cell physiology.


Subject(s)
Bacillus/enzymology , Bacterial Proton-Translocating ATPases/chemistry , Bacterial Proton-Translocating ATPases/metabolism , Bacterial Proton-Translocating ATPases/antagonists & inhibitors , Binding Sites , Crystallography, X-Ray , Dicyclohexylcarbodiimide/pharmacology , Hydrogen-Ion Concentration
10.
Biochim Biophys Acta ; 1837(7): 1208-18, 2014 Jul.
Article in English | MEDLINE | ID: mdl-24513197

ABSTRACT

ATP synthase is a ubiquitous enzyme that is largely conserved across the kingdoms of life. This conservation is in accordance with its central role in chemiosmotic energy conversion, a pathway utilized by far by most living cells. On the other hand, in particular pathogenic bacteria whilst employing ATP synthase have to deal with energetically unfavorable conditions such as low oxygen tensions in the human host, e.g. Mycobacterium tuberculosis can survive in human macrophages for an extended time. It is well conceivable that such ATP synthases may carry idiosyncratic features that contribute to efficient ATP production. In this review genetic and biochemical data on mycobacterial ATP synthase are discussed in terms of rotary catalysis, stator composition, and regulation of activity. ATP synthase in mycobacteria is of particular interest as this enzyme has been validated as a target for promising new antibacterial drugs. A deeper understanding of the working of mycobacterial ATP synthase and its atypical features can provide insight in adaptations of bacterial energy metabolism. Moreover, pinpointing and understanding critical differences as compared with human ATP synthase may provide input for the design and development of selective ATP synthase inhibitors as antibacterials. This article is part of a Special Issue entitled: 18th European Bioenergetic Conference.


Subject(s)
Bacterial Proton-Translocating ATPases/metabolism , Mitochondrial Proton-Translocating ATPases/metabolism , Mycobacterium tuberculosis/enzymology , Amino Acid Sequence , Anti-Bacterial Agents/pharmacology , Bacterial Proton-Translocating ATPases/antagonists & inhibitors , Bacterial Proton-Translocating ATPases/chemistry , Mitochondrial Proton-Translocating ATPases/antagonists & inhibitors , Mitochondrial Proton-Translocating ATPases/chemistry , Molecular Sequence Data , Mycobacterium tuberculosis/drug effects , Protein Structure, Tertiary
11.
Peptides ; 36(1): 121-8, 2012 Jul.
Article in English | MEDLINE | ID: mdl-22569076

ABSTRACT

The potential usefulness of antimicrobial peptides (AMPs) as antimycobacterial compounds has not been extensively explored. Although a myriad of studies on AMPs from different sources have been done, some of its mechanisms of action are still unknown. Maganins are of particular interest since they do not lyse non-dividing mammalian cells. In this work, AMPs with well-recognized activity against bacteria were synthesized, characterized, purified and their antimycobacterial activity and influence on ATPase activity in mycobacterial plasma membrane vesicles were assessed. Using bioinformatics tools, a magainin-I analog peptide (MIAP) with improved antimicrobial activity was designed. The influence of MIAP on proton (H(+)) pumping mediated by F(1)F(0)-ATPase in plasma membrane vesicles obtained from Mycobacterium tuberculosis was evaluated. We observed that the antimycobacterial activity of AMPs was low and variable. However, the activity of the designed peptide MIAP against M. tuberculosis was 2-fold higher in comparison to magainin-I. The basal ATPase activity of mycobacterial plasma membrane vesicles decreased approximately 24-30% in the presence of AMPs. On the other hand, the MIAP peptide completely abolished the F(1)F(0)-ATPase activity involved in H(+) pumping across M. tuberculosis plasma membranes vesicles at levels similar to the specific inhibitor N,N' dicyclohexylcarbodiimide. These finding suggest that AMPs can inhibit the H(+) pumping F(1)F(0)-ATPase of mycobacterial plasma membrane that potentially interferes the internal pH and viability of mycobacteria.


Subject(s)
Anti-Bacterial Agents/pharmacology , Antimicrobial Cationic Peptides/pharmacology , Bacterial Proton-Translocating ATPases/metabolism , Cell Membrane/enzymology , Mycobacterium smegmatis/enzymology , Mycobacterium tuberculosis/enzymology , Amino Acid Sequence , Anti-Bacterial Agents/chemistry , Anti-Bacterial Agents/isolation & purification , Antimicrobial Cationic Peptides/chemical synthesis , Antimicrobial Cationic Peptides/isolation & purification , Bacterial Proton-Translocating ATPases/antagonists & inhibitors , Cell Membrane/drug effects , Disk Diffusion Antimicrobial Tests , Molecular Sequence Data , Mycobacterium smegmatis/drug effects , Mycobacterium tuberculosis/drug effects , Protein Structure, Secondary , Subcellular Fractions/drug effects , Subcellular Fractions/enzymology
12.
Biochem Biophys Res Commun ; 417(1): 541-5, 2012 Jan 06.
Article in English | MEDLINE | ID: mdl-22166211

ABSTRACT

Enterococcus hirae is able to grow under anaerobic conditions during glucose fermentation (pH 8.0) which is accompanied by acidification of the medium and drop in its oxidation-reduction potential (E(h)) from positive values to negative ones (down to ∼-200 mV). In this study, iron (III) ions (Fe(3+)) have been shown to affect bacterial growth in a concentration-dependent manner (within the range of 0.05-2 mM) by decreasing lag phase duration and increasing specific growth rate. While iron(II) ions (Fe(2+)) had opposite effects which were reflected by suppressing bacterial growth. These ions also affected the changes in E(h) values during bacterial growth. It was revealed that ATPase activity with and without N,N'-dicyclohexylcarbodiimide (DCCD), an inhibitor of the F(0)F(1)-ATPase, increased in the presence of even low Fe(3+) concentration (0.05 mM) but decreased in the presence of Fe(2+). It was established that Fe(3+) and Fe(2+) both significantly inhibited the proton-potassium exchange of bacteria, but stronger effects were in the case of Fe(2+) with DCCD. Such results were observed with both wild-type ATCC9790 and atpD mutant (with defective F(0)F(1)) MS116 strains but they were different with Fe(3+) and Fe(2+). It is suggested that the effects of Fe(3+) might be due to interaction of these ions with F(0)F(1) or there might be a Fe(3+)-dependent ATPase different from F(0)F(1) in these bacteria that is active even in the presence of DCCD. Fe(2+) inhibits E. hirae cell growth probably by strong effect on E(h) leading to changes in F(0)F(1) and decreasing its activity.


Subject(s)
Bacterial Proton-Translocating ATPases/metabolism , Cell Membrane/enzymology , Cell Proliferation/drug effects , Enterococcus/drug effects , Iron/pharmacology , Bacterial Proton-Translocating ATPases/antagonists & inhibitors , Dicyclohexylcarbodiimide/pharmacology , Enterococcus/growth & development , Ions/pharmacology
13.
Biochemistry (Mosc) ; 76(11): 1253-61, 2011 Nov.
Article in English | MEDLINE | ID: mdl-22117552

ABSTRACT

MgADP and MgATP binding to catalytic sites of ßY341W-α(3)ß(3)γ subcomplex of F(1)-ATPase from thermophilic Bacillus PS3 has been assessed using their effect on the enzyme inhibition by 7-chloro-4-nitrobenz-2-oxa-1,3-diazole (NBD-Cl). It was assumed that NBD-Cl can inhibit only when catalytic sites are empty, and inhibition is prevented if a catalytic site is occupied with a nucleotide. In the absence of an activator, MgADP and MgATP protect ßY341W-α(3)ß(3)γ subcomplex from inhibition by NBD-Cl by binding to two catalytic sites with an affinity of 37 µM and 12 mM, and 46 µM and 15 mM, respectively. In the presence of an activator lauryldimethylamine-N-oxide (LDAO), MgADP protects ßY341W-α(3)ß(3)γ subcomplex from inhibition by NBD-Cl by binding to a catalytic site with a K(d) of 12 mM. Nucleotide binding to a catalytic site with affinity in the millimolar range has not been previously revealed in the fluorescence quenching experiments with ßY341W-α(3)ß(3)γ subcomplex. In the presence of activators LDAO or selenite, MgATP protects ßY341W-α(3)ß(3)γ subcomplex from inhibition by NBD-Cl only partially, and the enzyme remains sensitive to inhibition by NBD-Cl even at MgATP concentrations that are saturating for ATPase activity. The results support a bi-site mechanism of catalysis by F(1)-ATPases.


Subject(s)
Adenosine Diphosphate/chemistry , Adenosine Triphosphate/chemistry , Bacillus/enzymology , Bacterial Proton-Translocating ATPases/chemistry , Mutant Proteins/chemistry , Bacterial Proton-Translocating ATPases/antagonists & inhibitors , Binding Sites , Catalysis , Catalytic Domain , Dimethylamines/chemistry , Kinetics , Mutant Proteins/metabolism , Nitrobenzenes/chemistry , Oxazoles/chemistry , Protein Subunits/chemistry
14.
Prikl Biokhim Mikrobiol ; 47(1): 16-22, 2011.
Article in Russian | MEDLINE | ID: mdl-21442915

ABSTRACT

When the roots of Vicia faba L. beans were subjected to hypoxic stress, the activity of H(+)-ATPase on the peribacteroid membrane, as well as the transport of dicarboxylates (malate and succinate) mediated by this enzyme, decreased. Since malate and succinate are the main carbon-containing metabolites involved in the energy supply to bacteroids, this caused a change of the relation type from mutualism to commensalism, and the domination of the eukaryote over the prokaryote consequently increased.


Subject(s)
Bacterial Proteins/metabolism , Bacterial Proton-Translocating ATPases/metabolism , Oxygen/metabolism , Rhizobium leguminosarum/metabolism , Root Nodules, Plant/microbiology , Anaerobiosis , Bacterial Proteins/antagonists & inhibitors , Bacterial Proton-Translocating ATPases/antagonists & inhibitors , Biological Transport , Cell Membrane/metabolism , Glutamic Acid/metabolism , Malates/metabolism , Nitrogen Fixation/physiology , Stress, Physiological , Succinic Acid/metabolism , Symbiosis/physiology , Vicia faba/microbiology
15.
Int J Biol Macromol ; 46(3): 367-74, 2010 Apr 01.
Article in English | MEDLINE | ID: mdl-20100509

ABSTRACT

Previously melittin, the alpha-helical basic honey bee venom peptide, was shown to inhibit F(1)-ATPase by binding at the beta-subunit DELSEED motif of F(1)F(o)-ATP synthase. Herein, we present the inhibitory effects of the basic alpha-helical amphibian antimicrobial peptides, ascaphin-8, aurein 2.2, aurein 2.3, carein 1.8, carein 1.9, citropin 1.1, dermaseptin, maculatin 1.1, maganin II, MRP, or XT-7, on purified F(1) and membrane bound F(1)F(0)Escherichia coli ATP synthase. We found that the extent of inhibition by amphibian peptides is variable. Whereas MRP-amide inhibited ATPase essentially completely (approximately 96% inhibition), carein 1.8 did not inhibit at all (0% inhibition). Inhibition by other peptides was partial with a range of approximately 13-70%. MRP-amide was also the most potent inhibitor on molar scale (IC(50) approximately 3.25 microM). Presence of an amide group at the c-terminal of peptides was found to be critical in exerting potent inhibition of ATP synthase ( approximately 20-40% additional inhibition). Inhibition was fully reversible and found to be identical in both F(1)F(0) membrane preparations as well as in isolated purified F(1). Interestingly, growth of E. coli was abrogated in the presence of ascaphin-8, aurein 2.2, aurein 2.3, citropin 1.1, dermaseptin, magainin II-amide, MRP, MRP-amide, melittin, or melittin-amide but was unaffected in the presence of carein 1.8, carein 1.9, maculatin 1.1, magainin II, or XT-7. Hence inhibition of F(1)-ATPase and E. coli cell growth by amphibian antimicrobial peptides suggests that their antimicrobial/anticancer properties are in part linked to their actions on ATP synthase.


Subject(s)
Amphibians/metabolism , Antimicrobial Cationic Peptides/pharmacology , Bacterial Proton-Translocating ATPases/antagonists & inhibitors , Escherichia coli/enzymology , Amino Acid Sequence , Animals , Antimicrobial Cationic Peptides/chemistry , Bacterial Proton-Translocating ATPases/chemistry , Bacterial Proton-Translocating ATPases/isolation & purification , Cell Membrane/drug effects , Cell Membrane/enzymology , Culture Media , Escherichia coli/drug effects , Escherichia coli/growth & development , Glucose/pharmacology , Melitten/chemistry , Melitten/pharmacology , Microbial Sensitivity Tests , Molecular Sequence Data , Protein Binding/drug effects
16.
J Bioenerg Biomembr ; 42(1): 1-10, 2010 Feb.
Article in English | MEDLINE | ID: mdl-20082212

ABSTRACT

Subunit alpha of the Escherichia coli F(1)F(O) ATP synthase has been produced, and its low-resolution structure has been determined. The monodispersity of alpha allowed the studies of nucleotide-binding and inhibitory effect of 4-Chloro-7-nitrobenzofurazan (NBD-Cl) to ATP/ADP-binding. Binding constants (K ( d )) of 1.6 microM of bound MgATP-ATTO-647N and 2.9 microM of MgADP-ATTO-647N have been determined from fluorescence correlation spectroscopy data. A concentration of 51 microM and 55 microM of NBD-Cl dropped the MgATP-ATTO-647N and MgADP-ATTO-647N binding capacity to 50% (IC(50)), respectively. In contrast, no effect was observed in the presence of N,N'-dicyclohexylcarbodiimide. As subunit alpha is the homologue of subunit B of the A(1)A(O) ATP synthase, the interaction of NBD-Cl with B of the A-ATP synthase from Methanosarcina mazei Gö1 has also been shown. The data reveal a reduction of nucleotide-binding of B due to NBD-Cl, resulting in IC(50) values of 41 microM and 42 microM for MgATP-ATTO-647N and MgADP-ATTO-647N, respectively.


Subject(s)
4-Chloro-7-nitrobenzofurazan/pharmacology , Archaeal Proteins/chemistry , Archaeal Proteins/metabolism , Bacterial Proton-Translocating ATPases/chemistry , Bacterial Proton-Translocating ATPases/metabolism , Escherichia coli Proteins/chemistry , Escherichia coli Proteins/metabolism , Proton-Translocating ATPases/chemistry , Proton-Translocating ATPases/metabolism , Adenosine Diphosphate/metabolism , Adenosine Triphosphate/metabolism , Archaeal Proteins/antagonists & inhibitors , Bacterial Proton-Translocating ATPases/antagonists & inhibitors , Bacterial Proton-Translocating ATPases/genetics , Base Sequence , DNA Primers/genetics , Enzyme Inhibitors/pharmacology , Escherichia coli/enzymology , Escherichia coli/genetics , Escherichia coli Proteins/antagonists & inhibitors , Escherichia coli Proteins/genetics , Kinetics , Models, Molecular , Molecular Motor Proteins/antagonists & inhibitors , Molecular Motor Proteins/chemistry , Molecular Motor Proteins/metabolism , Protein Subunits , Proton-Translocating ATPases/antagonists & inhibitors , Scattering, Small Angle , Spectrometry, Fluorescence , X-Ray Diffraction
17.
Cell Biochem Biophys ; 51(2-3): 97-103, 2008.
Article in English | MEDLINE | ID: mdl-18633580

ABSTRACT

The coherent electromagnetic radiation (EMR) of the frequency of 51.8 and 53 GHz with low intensity (the power flux density of 0.06 mW/cm(2)) affected the growth of Escherichia coli K12(lambda) under fermentation conditions: the lowering of the growth specific rate was considerably (approximately 2-fold) increased with exposure duration of 30-60 min; a significant decrease in the number of viable cells was also shown. Moreover, the enforced effects of the N,N'-dicyclohexylcarbodiimide (DCCD), inhibitor of H(+)-transporting F(0)F(1)-ATPase, on energy-dependent H(+) efflux by whole cells and of antibiotics like tetracycline and chloramphenicol on the following bacterial growth and survival were also determined after radiation. In addition, the lowering in DCCD-inhibited ATPase activity of membrane vesicles from exposed cells was defined. The results confirmed the input of membranous changes in bacterial action of low intensity extremely high frequency EMR, when the F(0)F(1)-ATPase is probably playing a key role. The radiation of bacteria might lead to changed metabolic pathways and to antibiotic resistance. It may also give bacteria with a specific role in biosphere.


Subject(s)
Anti-Bacterial Agents/pharmacology , Dicyclohexylcarbodiimide/pharmacology , Escherichia coli K12/growth & development , Escherichia coli K12/radiation effects , Radiation , Bacterial Proton-Translocating ATPases/antagonists & inhibitors , Bacterial Proton-Translocating ATPases/metabolism , Drug Resistance, Bacterial/radiation effects , Escherichia coli K12/drug effects , Escherichia coli K12/metabolism , Sensitivity and Specificity
18.
Biochim Biophys Acta ; 1767(11): 1340-52, 2007 Nov.
Article in English | MEDLINE | ID: mdl-17961501

ABSTRACT

The density distribution of photosynthetic membrane vesicles (chromatophores) from Rhodobacter capsulatus has been studied by isopicnic centrifugation. The average vesicle diameters, examined by electron microscopy, varied between 61 and 72 nm in different density fractions (70 nm in unfractionated chromatophores). The ATP synthase catalytic activities showed maxima displaced toward the higher density fractions relative to bacteriochlorophyll, resulting in higher specific activities in those fractions (about threefold). The amount of ATP synthase, measured by quantitative Western blotting, paralleled the catalytic activities. The average number of ATP synthases per chromatophore, evaluated on the basis of the Western blotting data and of vesicle density analysis, ranged between 8 and 13 (10 in unfractionated chromatophores). Poisson distribution analysis indicated that the probability of chromatophores devoid of ATP synthase was negligible. The effects of ATP synthase inhibition by efrapeptin on the time course of the transmembrane electric potential (evaluated as carotenoid electrochromic response) and on ATP synthesis were studied comparatively. The ATP produced after a flash and the total charge associated with the proton flow coupled to ATP synthesis were more resistant to efrapeptin than the initial value of the phosphorylating currents, indicating that several ATP synthases are fed by protons from the same vesicle.


Subject(s)
Bacterial Chromatophores/enzymology , Bacterial Proton-Translocating ATPases/metabolism , Rhodobacter capsulatus/enzymology , Adenosine Triphosphate/chemistry , Adenosine Triphosphate/metabolism , Bacterial Chromatophores/chemistry , Bacterial Chromatophores/ultrastructure , Bacterial Proton-Translocating ATPases/antagonists & inhibitors , Bacterial Proton-Translocating ATPases/chemistry , Blotting, Western , Carotenoids/chemistry , Carotenoids/metabolism , Centrifugation, Density Gradient , Hydrolysis/drug effects , Kinetics , Light , Microscopy, Electron , Peptides/pharmacology , Phosphorylation/drug effects , Rhodobacter capsulatus/chemistry , Rhodobacter capsulatus/ultrastructure , Scattering, Radiation , Spectrophotometry, Ultraviolet , Sucrose/chemistry
19.
Adv Exp Med Biol ; 603: 167-77, 2007.
Article in English | MEDLINE | ID: mdl-17966413

ABSTRACT

The phage-shock-protein (Psp) system of Yersinia enterocolitica encodes a stress response that is essential for viability when the secretin component of its Ysc type III secretion system is produced. Therefore, Y enterocolitica psp null mutants are completely avirulent in a mouse model of infection. This article summarizes what is known about the regulation of the Y. enterocolitica Psp system. psp gene expression is induced by the overproduction of secretins, some cytoplasmic membrane proteins, or disruption of the F0F1-ATPase. All of these may deplete the proton-motive force, which could be the inducing signal for the Psp system. None of these Psp triggers induce two other extracytoplasmic stress responses (RpoE and Cpx), which suggests that the inducing signal of the Psp system is specific. The induction of psp gene expression requires the cytoplasmic membrane proteins PspB and PspC, which interact and presumably work together to achieve their regulatory function. However, the regulatory role of PspBC does not completely explain why they are essential for survival during secretin-stress, suggesting that they have a second unrelated role. Finally, current ideas about how PspB/C might sense the inducing trigger(s) are briefly discussed, including a consideration of whether there might be any unidentified signal transduction components that communicate with the Psp system.


Subject(s)
Bacterial Proteins/genetics , Bacterial Proteins/physiology , Heat-Shock Proteins/genetics , Heat-Shock Proteins/physiology , Yersinia enterocolitica/genetics , Yersinia enterocolitica/physiology , Bacterial Proton-Translocating ATPases/antagonists & inhibitors , Bacterial Proton-Translocating ATPases/genetics , Bacterial Proton-Translocating ATPases/metabolism , Genes, Bacterial , Humans , Membrane Proteins/genetics , Membrane Proteins/physiology , Models, Biological , Signal Transduction/genetics , Signal Transduction/physiology , Species Specificity , Transcription Factors/genetics , Transcription Factors/physiology , Virulence/genetics , Yersinia/genetics , Yersinia enterocolitica/pathogenicity , Yersinia enterocolitica/virology
20.
Am J Physiol Cell Physiol ; 293(5): C1437-44, 2007 Nov.
Article in English | MEDLINE | ID: mdl-17715386

ABSTRACT

Mammalian multidrug and toxic compound extrusion (MATE) proteins are classified into three subfamilies: classes I, II, and III. We previously showed that two of these families act as polyspecific H(+)-coupled transporters of organic cations (OCs) at final excretion steps in liver and kidney (Otsuka et al. Proc Natl Acad Sci USA 102: 17923-17928, 2005; Omote et al. Trends Pharmacol Sci 27: 587-593, 2006). Rodent MATE2 proteins are class III MATE transporters, the molecular nature, as well as transport properties, of which remain to be characterized. In the present study, we investigated the transport properties and localization of mouse MATE2 (mMATE2). On expression in human embryonic kidney (HEK)-293 cells, mMATE2 localized to the intracellular organelles and plasma membrane. mMATE2 mediated pH-dependent TEA transport with substrate specificity similar to, but distinct from, that of mMATE1, which prefers N-methylnicotinamide and guanidine as substrates. mMATE2 expressed in insect cells was solubilized and reconstituted with bacterial H(+)-ATPase into liposomes. The resultant proteoliposomes exhibited ATP-dependent uptake of TEA that was sensitive to carbonyl cyanide 3-chlorophenylhydrazone but unaffected by valinomycin in the presence of K(+). Immunologic techniques using specific antibodies revealed that mMATE2 was specifically expressed in testicular Leydig cells. Thus mMATE2 appears to act as a polyspecific H(+)/OC exporter in Leydig cells. It is concluded that all classes of mammalian MATE proteins act as polyspecific and electroneutral transporters of organic cations.


Subject(s)
Antiporters/metabolism , Leydig Cells/metabolism , Organic Cation Transport Proteins/metabolism , Adenosine Triphosphate/metabolism , Amino Acid Sequence , Animals , Antiporters/chemistry , Antiporters/genetics , Bacterial Proton-Translocating ATPases/antagonists & inhibitors , Bacterial Proton-Translocating ATPases/metabolism , Cell Line , Enzyme Inhibitors/pharmacology , Guanidine/metabolism , Humans , Hydrazones/pharmacology , Hydrogen-Ion Concentration , Male , Mice , Molecular Sequence Data , Niacinamide/analogs & derivatives , Niacinamide/metabolism , Organic Cation Transport Proteins/chemistry , Organic Cation Transport Proteins/genetics , Proteolipids/metabolism , Recombinant Proteins/metabolism , Tetraethylammonium/metabolism , Time Factors , Transfection
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