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1.
World J Microbiol Biotechnol ; 40(8): 251, 2024 Jun 24.
Article in English | MEDLINE | ID: mdl-38910228

ABSTRACT

Genetic diversity in Sclerotium rolfsii is useful for understanding its population structure, identifying different mycelial compatibility groups (MCGs), and developing targeted strategies for disease management in affected crops. In our study, a comprehensive genetic analysis was conducted on 50 isolates of S. rolfsii, collected from various geographic regions and host plants. Two specific genes, TEF1α and RPB2, were utilized to assess the genetic diversity and relationships among these isolates. Notably, out of 1225 pairings examined, only 154 exhibited a compatible reaction, while the majority displayed antagonistic reactions, resulting in the formation of a barrier zone. The isolates were grouped into 10 distinct MCGs. These MCGs were further characterized using genetic sequencing. TEF1α sequences distinguished the isolates into 17 distinct clusters, and RPB2 sequences classified them into 20 clusters. Some MCGs shared identical gene sequences within each gene, while others exhibited unique sequences. Intriguingly, when both TEF1α and RPB2 sequences were combined, all 10 MCGs were effectively differentiated, even those that appeared identical with single-gene analysis. This combined approach provided a comprehensive understanding of the genetic diversity and relationships among the S. rolfsii isolates, allowing for precise discrimination between different MCGs. The results shed light on the population structure and genetic variability within this plant pathogenic fungus, providing valuable insights for disease management and control strategies. This study highlights the significance of comprehending the varied virulence characteristics within S. rolfsii isolates, categorizing them into specific virulence groups based on disease severity index (DSI) values. The association with MCGs provides additional insights into the genetic underpinnings of virulence in this pathogen. Furthermore, the identification of geographical patterns in virulence implies the influence of region-specific factors, with potential implications for disease control and crop protection strategies.Please confirm if the author names are presented accurately and in the correct sequence (given name, middle name/initial, family name). Author 1 Given name: [G. M. Sandeep] Last name [Kumar]. Author 2 Given name: [Praveen Kumar] Last name [Singh]. Also, kindly confirm the details in the metadata are correct.I confirm that the given names are accurate and presented in the correct sequence.


Subject(s)
Basidiomycota , Genetic Variation , Multilocus Sequence Typing , Phylogeny , Plant Diseases , Plant Diseases/microbiology , Basidiomycota/genetics , Basidiomycota/isolation & purification , Basidiomycota/classification , Mycelium/genetics , Fungal Proteins/genetics , DNA, Fungal/genetics , Crops, Agricultural/microbiology
2.
Fungal Biol ; 128(4): 1815-1826, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38876534

ABSTRACT

Endophytic fungi, pivotal in facilitating plant co-evolution, significantly enhance plant growth, stress resistance, and environmental adaptability. Despite their importance, the spatial distribution of stem endophytic fungi (SEF) within host plants remains poorly characterized. Here, we employed high-throughput sequencing to conduct a comparative analysis of SEF communities in Mussaenda pubescens on a regional scale. Our findings reveal that whole-SEF communities were overwhelmingly dominated by members of the phylum Ascomycota, accounting for 85.9 %, followed by Basidiomycota at 13.9 %, and that alpha diversity within the whole-SEF community of M. pubescens remains relatively consistent across sampling sites. However, significant variation was observed within conditionally abundant taxa (CAT), conditionally rare or abundant taxa (CRAT), and conditionally rare taxa (CRT). Climatic factors emerged as the primary influence on SEF community distribution, followed by spatial distance and stem chemical properties. Neutral community modeling results suggested that both stochastic and deterministic processes play a role in shaping whole-SEF communities, with deterministic processes having a stronger influence on CRT subcommunities. Furthermore, the CRT co-occurrence network exhibited a more complex structure, characterized by higher values of network betweenness and degree relative to CAT and CRAT subcommunities. These findings enhance our understanding of community assembly and ecological interactions between stem fungal endophytes, presenting opportunities for harnessing fungal resources for the benefit of humanity.


Subject(s)
Endophytes , Plant Stems , Endophytes/classification , Endophytes/isolation & purification , Endophytes/genetics , Plant Stems/microbiology , Ascomycota/classification , Ascomycota/genetics , Ascomycota/isolation & purification , Fungi/classification , Fungi/isolation & purification , Fungi/genetics , High-Throughput Nucleotide Sequencing , Basidiomycota/classification , Basidiomycota/genetics , Basidiomycota/isolation & purification , Biodiversity
3.
J Microbiol Biotechnol ; 34(6): 1249-1259, 2024 Jun 28.
Article in English | MEDLINE | ID: mdl-38938004

ABSTRACT

It remains to be determined whether there is a geographical distribution pattern and phylogenetic signals for the Mycena strains with seed germination of the orchid plant Gastrodia elata. This study analyzed the community composition and phylogenetics of 72 Mycena strains associated with G. elata varieties (G. elata. f. glauca and G. elata. f. viridis) using multiple gene fragments (ITS+nLSU+SSU). We found that (1) these diverse Mycena phylogenetically belong to the Basidiospore amyloid group. (2) There is a phylogenetic signal of Mycena for germination of G. elata. Those strains phylogenetically close to M. abramsii, M. polygramma, and an unclassified Mycena had significantly higher germination rates than those to M. citrinomarginata. (3) The Mycena distribution depends on geographic site and G. elata variety. Both unclassified Mycena group 1 and the M. abramsii group were dominant for the two varieties of G. elata; in contrast, the M. citrinomarginata group was dominant in G. elata f. glauca but absent in G. elata f. viridis. Our results indicate that the community composition of numerous Mycena resources in the Zhaotong area varies by geographical location and G. elata variety. Importantly, our results also indicate that Mycena's phylogenetic status is correlated with its germination rate.


Subject(s)
Gastrodia , Germination , Phylogeny , Gastrodia/microbiology , Gastrodia/genetics , DNA, Fungal/genetics , Seeds/microbiology , Seeds/growth & development , Basidiomycota/genetics , Basidiomycota/classification , Basidiomycota/physiology
4.
Mycologia ; 116(4): 601-620, 2024.
Article in English | MEDLINE | ID: mdl-38847769

ABSTRACT

Three novel species of the genus Leucocoprinus, named Lc. cinnamomeodiscus, Lc. dahranwalanus, and Lc. iqbalii, are described from unexplored regions of southern Punjab, Pakistan, based on comprehensive analyses of morphoanatomical characteristics and molecular phylogenetic data. We provide illustrations of freshly collected basidiomata and detailed line drawings highlighting key anatomical features. The molecular phylogenetic analyses, which are based on the internal transcribed spacer (ITS) region and combined ITS-28S sequences, consistently position these newly described species within the genus Leucocoprinus. Additionally, this study also introduces new taxonomic combinations for previously reported Leucoagaricus species.


Subject(s)
DNA, Fungal , DNA, Ribosomal Spacer , Phylogeny , Pakistan , DNA, Fungal/genetics , DNA, Ribosomal Spacer/genetics , Sequence Analysis, DNA , Spores, Fungal/cytology , Basidiomycota/genetics , Basidiomycota/classification , RNA, Ribosomal, 28S/genetics , Biodiversity
5.
J Microbiol ; 62(6): 429-447, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38753127

ABSTRACT

Hymenochaetales Oberw. is an order classified in Basidiomycota of Fungi, and species in this order display notable diversity. They exhibit various fruiting body shapes, including clavarioid, effused-reflexed, and resupinate basidiomes. Few mycorrhizal species have been reported in Hymenochaetales, but wood-decaying species dominate the order. Hymenochaetaceae Imazeki & Toki and Schizoporaceae Jülich are the most species-rich families within Hymenochaetales, and most species in the Republic of Korea belong to these two families. As such, current taxonomic classification and nomenclature are not reflected upon species in the remaining Hymenochaetales families. For this study, a multifaceted morphological and multigenetic marker-based phylogenetic investigation was conducted to, firstly, comprehensively identify understudied Hymenochaetales specimens in Korea and, secondly, reflect the updates on the species classification. Five genetic markers were assessed for the phylogenetic analysis: nuclear small subunit ribosomal DNA (nSSU), internal transcribed spacer (ITS), nuclear large subunit ribosomal DNA (nLSU), RNA polymerase II subunit 2 gene (RPB2), and translation elongation factor 1 gene (TEF1). The results from phylogenetic analysis supported 18 species classified under eight families (excluding Hymenochaetaceae and Schizoporaceae) in Korea. Species formerly placed in Rickenellaceae and Trichaptum sensu lato have been systematically revised based on recent taxonomic reconstructions. In addition, our findings revealed one new species, Rickenella umbelliformis, and identified five formerly nationally unreported species classified under five understudied families. Our findings contribute to a better understanding of Hymenochaetales diversity and highlight the need for continued research.


Subject(s)
Basidiomycota , DNA, Fungal , Phylogeny , Republic of Korea , DNA, Fungal/genetics , Basidiomycota/genetics , Basidiomycota/classification , DNA, Ribosomal Spacer/genetics , Sequence Analysis, DNA , DNA, Ribosomal/genetics , Peptide Elongation Factor 1/genetics
6.
Mycologia ; 116(4): 509-535, 2024.
Article in English | MEDLINE | ID: mdl-38742888

ABSTRACT

South Africa has an indigenous rust (Pucciniales) funga of approximately 460 species. This funga was sampled with species from as many genera as possible. The nuclear ribosomal large subunit (28S) region was amplified from samples representing 110 indigenous species, as well as the small subunit (18S) region and the cytochrome c oxidase subunit 3 (CO3) in some cases, and these were used in phylogenetic analyses. One new species is described, 12 new combinations made, six names reinstated, and two life history connections made. The life histories of this funga were summarized; it is dominated by species with contracted life histories. The majority of species are autoecious, with a small proportion being heteroecious. Of the autoecious species, many will likely be homothallic with no spermagonia. A shortened life history with homothallism allows for a single basidiospore infection to initiate a local population buildup under the prevailing unpredictable climatic conditions. Suggestions are made as to the possible origin of this funga based on the development of the modern South African flora. It is postulated that the rusts of South Africa are of relatively recent origin, consisting of three groups. Firstly, there is an African tropical element with members of the Mikronegerineae (Hemileia), the Sphaerophragmiaceae (Puccorchidium, Sphaerophragmium), and certain Uredinineae (Stomatisora). Their immediate ancestors likely occurred in the tropical forests of Africa during the Paleogene. Secondly, there is a pantropical element including the Raveneliaceae (e.g., Diorchidium, Maravalia, Ravenelia sensu lato, Uropyxis). This likely diversified during the Neogene, when the mimosoids became the dominant trees of the developing savannas. Thirdly, the Pucciniaceae invaded Africa as this continent pushed northward closing the Tethys Sea. They diversified with the development of the savannas as these become the dominant habitat in most of Africa, and are by far the largest component of the South African rust funga.


Subject(s)
Basidiomycota , DNA, Fungal , Phylogeny , South Africa , Basidiomycota/genetics , Basidiomycota/classification , DNA, Fungal/genetics , Sequence Analysis, DNA , RNA, Ribosomal, 28S/genetics , DNA, Ribosomal/genetics , Electron Transport Complex IV/genetics , RNA, Ribosomal, 18S/genetics
7.
Environ Microbiol Rep ; 16(3): e13213, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38738810

ABSTRACT

Since a significant proportion of plant matter is consumed by herbivores, a necessary adaptation for many phyllosphere microbes could be to survive through the guts of herbivores. While many studies explore the gut microbiome of herbivores by surveying the microbiome in their frass, few studies compare the phyllosphere microbiome to the gut microbiome of herbivores. High-throughput metabarcode sequencing was used to track the fungal community from milkweed (Asclepias spp.) leaves to monarch caterpillar frass. The most commonly identified fungal taxa that dominated the caterpillar frass after the consumption of leaves were yeasts, mostly belonging to the Basidiomycota phylum. While most fungal communities underwent significant bottlenecks and some yeast taxa increased in relative abundance, a consistent directional change in community structure was not identified from leaf to caterpillar frass. These results suggest that some phyllosphere fungi, especially diverse yeasts, can survive herbivory, but whether herbivory is a key stage of their life cycle remains uncertain. For exploring phyllosphere fungi and the potential coprophilous lifestyles of endophytic and epiphytic fungi, methods that target yeast and Basidiomycota fungi are recommended.


Subject(s)
Asclepias , Fungi , Herbivory , Plant Leaves , Animals , Plant Leaves/microbiology , Asclepias/microbiology , Fungi/classification , Fungi/genetics , Fungi/isolation & purification , Fungi/physiology , Yeasts/classification , Yeasts/isolation & purification , Yeasts/genetics , Mycobiome , Basidiomycota/classification , Basidiomycota/genetics , Basidiomycota/physiology , Basidiomycota/isolation & purification , Gastrointestinal Microbiome , Larva/microbiology , Moths/microbiology
8.
Sci Rep ; 14(1): 10601, 2024 05 08.
Article in English | MEDLINE | ID: mdl-38719921

ABSTRACT

A plant parasite associated with the white haze disease in apples, the Basidiomycota Gjaerumia minor, has been found in most samples of the global bathypelagic ocean. An analysis of environmental 18S rDNA sequences on 12 vertical profiles of the Malaspina 2010 expedition shows that the relative abundance of this cultured species increases with depth while its distribution is remarkably different between the deep waters of the Pacific and Atlantic oceans, being present in higher concentrations in the former. This is evident from sequence analysis and a microscopic survey with a species-specific newly designed TSA-FISH probe. Several hints point to the hypothesis that G. minor is transported to the deep ocean attached to particles, and the absence of G. minor in bathypelagic Atlantic waters could then be explained by the absence of this organism in surface waters of the equatorial Atlantic. The good correlation of G. minor biomass with Apparent Oxygen Utilization, recalcitrant carbon and free-living prokaryotic biomass in South Pacific waters, together with the identification of the observed cells as yeasts and not as resting spores (teliospores), point to the possibility that once arrived at deep layers this species keeps on growing and thriving.


Subject(s)
Basidiomycota , Pacific Ocean , Basidiomycota/genetics , Basidiomycota/isolation & purification , Basidiomycota/classification , RNA, Ribosomal, 18S/genetics , Seawater/microbiology , Phylogeny , Atlantic Ocean , DNA, Ribosomal/genetics , DNA, Fungal/genetics
9.
Int J Med Mushrooms ; 26(5): 43-57, 2024.
Article in English | MEDLINE | ID: mdl-38780422

ABSTRACT

Wild resources of Auricularia cornea (A. polytricha) are abundant in China, and genetic diversity and genetic relationships analysis of A. cornea can provide basis for germplasm resource utilization and innovation and molecular marker-assisted breeding. In this study, 22 Auricularia strains collected were identified as A. cornea based on ITS sequence analysis, and its genetic diversity was examined by ISSR and SRAP markers. The results showed that a total of 415 bands were amplified by 11 selected ISSR primers, with an average amplification of 37.73 bands per primer, and the mean values of Ne, I, and H were 1.302, 0.368, and 0.219, respectively. A total of 450 bands were amplified by 10 SRAP primers, with an average of 45 bands per primer, and the average of Ne, I, and H were 1.263, 0.302, and 0.183, respectively. The unweighted pair-group method with arithmetic means analysis based on ISSR-SRAP marker data revealed that the genetic similarity coefficient between the tested strains was 0.73-0.97, and the strains could be divided into five groups at 0.742, which had a certain correlation with regional distribution. The results of PCOA and population structure analysis based on ISSR-SRAP data also produced similar results. These results demonstrate the genetic diversity and distinctness among wild A. cornea and provide a theoretical reference for the classification, breeding, germplasm innovation, utilization, and variety protection of A. cornea resources.


Subject(s)
Basidiomycota , Genetic Variation , China , Basidiomycota/genetics , Basidiomycota/classification , Genetic Markers , Phylogeny , DNA, Fungal/genetics , Microsatellite Repeats , Sequence Analysis, DNA , DNA, Ribosomal Spacer/genetics
10.
Article in English | MEDLINE | ID: mdl-38780584

ABSTRACT

Four yeast strains belonging to the basidiomycetous yeast genus Mrakia were isolated from diverse habitats in the Ny-Ålesund region (Svalbard, High Arctic): two from vascular plants, one from seawater and one from freshwater. Phylogenetic analysis, based on the ITS region and the D1/D2 domain of the 28S rRNA gene, identified these four strains as representing two novel species within the genus Mrakia. The names Mrakia polaris sp. nov. (MycoBank number: MB 852063) and Mrakia amundsenii sp. nov. (MycoBank number: MB 852064) are proposed. These two new species show distinct psychrophilic adaptations, as they exhibit optimal growth at temperatures between 10 and 15°C, while being unable to grow at 25°C. The holotype of M. polaris sp. nov. is CPCC 300345T, and the holotype of M. amundsenii sp. nov. is CPCC 300572T.


Subject(s)
DNA, Fungal , Phylogeny , Seawater , Sequence Analysis, DNA , Arctic Regions , DNA, Fungal/genetics , Seawater/microbiology , Mycological Typing Techniques , Svalbard , RNA, Ribosomal, 28S/genetics , Basidiomycota/genetics , Basidiomycota/classification , Basidiomycota/isolation & purification , Fresh Water/microbiology , Ecosystem , Cold Temperature , Saccharomycetales/classification , Saccharomycetales/genetics , Saccharomycetales/isolation & purification
11.
Sci Rep ; 14(1): 9298, 2024 04 23.
Article in English | MEDLINE | ID: mdl-38654032

ABSTRACT

Agaricales, Russulales and Boletales are dominant orders among the wild mushrooms in Basidiomycota. Boletaceae, one of the major functional elements in terrestrial ecosystem and mostly represented by ectomycorrhizal symbionts of trees in Indian Himalaya and adjoining hills, are extraordinarily diverse and represented by numerous genera and species which are unexplored or poorly known. Therefore, their hidden diversity is yet to be revealed. Extensive macrofungal exploration by the authors to different parts of Himalaya and surroundings, followed by through morphological studies and multigene molecular phylogeny lead to the discovery of five new species of wild mushrooms: Leccinellum bothii sp. nov., Phylloporus himalayanus sp. nov., Phylloporus smithii sp. nov., Porphyrellus uttarakhandae sp. nov., and Retiboletus pseudoater sp. nov. Present communication deals with morphological details coupled with illustrations and phylogenetic inferences. Besides, Leccinellum sinoaurantiacum and Xerocomus rugosellus are also reported for the first time from this country.


Subject(s)
Agaricales , Phylogeny , India , Agaricales/genetics , Agaricales/classification , DNA, Fungal/genetics , Basidiomycota/genetics , Basidiomycota/classification
12.
Mycologia ; 116(3): 418-430, 2024.
Article in English | MEDLINE | ID: mdl-38530332

ABSTRACT

In 1895 and 2001, rust fungi affecting Licania trees (Chrysobalanchaceae) in Brazil were described as Uredo licaniae by Hennings in the state of Goiás and as Phakopsora tomentosae by Ferreira et al. in the state of Amazonas, respectively. Recently, a Licania rust fungus collected close to the Amazonian type location sharing symptoms with the former two species was subjected to morphological examinations and molecular phylogenetic analyses using 28S nuc rDNA (ITS2-28S) and cytochrome c oxidase subunit III (CO3) gene sequences. Since the original type specimen of Ph. tomentosae is considered lost, we carefully reviewed the type description and questioned the identity of the telium, which justified the description of the fungus as a Phakopsora species. Furthermore, the additional revision of the type material described by Hennings revealed that Ph. tomentosae is a synonym of U. licaniae. Based on the morphological examinations, disease symptoms, and shared hosts, we concluded that the newly collected material is conspecific with U. licaniae. However, the phylogenetic analyses rejected allocation in Phakopsora and instead assigned the Licania rust fungus in a sister relationship with Austropuccinia psidii (Sphaerophragmiaceae), the causal agent of the globally invasive myrtle rust pathogen. We therefore favored a recombination of U. licaniae (syn. Ph. tomentosae) into Austropuccinia and proposed the new name Austropuccina licaniae for the second species now identified for this genus. The fungus shares conspicuous symptoms with A. psidii, causing often severe infections of growing leaves and shoots that lead to leaf necrosis, leaf shedding, and eventually to the dieback of entire shoots. In view of the very similar symptoms of its aggressively invasive sister species, we briefly discuss the current state of knowledge about A. licaniae and the potential risks, and the opportunity of its identification.


Subject(s)
Basidiomycota , DNA, Fungal , Phylogeny , Plant Diseases , Basidiomycota/genetics , Basidiomycota/classification , Basidiomycota/isolation & purification , Plant Diseases/microbiology , DNA, Fungal/genetics , Brazil , Sequence Analysis, DNA , RNA, Ribosomal, 28S/genetics , DNA, Ribosomal/genetics , DNA, Ribosomal Spacer/genetics , Electron Transport Complex IV/genetics , Trees/microbiology
13.
Plant Dis ; 108(7): 1969-1971, 2024 Jul.
Article in English | MEDLINE | ID: mdl-38381970

ABSTRACT

Yellow Star-of-Bethlehem (Gagea lutea) is a rare and threatened bulbous plant in the Netherlands, with its largest stronghold in the northern province of Drenthe. In 2022, numerous plants within a population of G. lutea were found to be infected by a rust fungus, which was identified as Uromyces gageae based on morphological characteristics. Further examination of collected teliospores revealed differences from U. acutatus, a closely related rust species known to infect Ornithogalum and Gagea species. Rust symptoms on G. lutea plants were observed within the same population in April 2023, suggesting that teliospores surviving winter conditions serve as a viable source for recurrent infection. DNA of U. gageae and U. acutatus extracted from teliospores was used to obtain partial ribosomal DNA gene fragments by PCR. Amplicon sequencing revealed nucleotide variation between both rust species and verified the identity of the rust fungus on G. lutea as U. gageae. This confirmation substantiates the first documentation of U. gageae in the Netherlands. This study raises new avenues for research on the distribution and host range of U. gageae, as well as additional studies on the population dynamics of this potentially rare, wild plant-rust interaction.


Subject(s)
Basidiomycota , DNA, Fungal , Phylogeny , Plant Diseases , Basidiomycota/genetics , Basidiomycota/physiology , Basidiomycota/classification , Netherlands , Plant Diseases/microbiology , DNA, Fungal/genetics , Spores, Fungal/genetics
14.
Plant Dis ; 108(6): 1437-1444, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38100673

ABSTRACT

Rust fungi are the largest group of obligate plant pathogens and cause severe damage to global forests and agricultural security. Meliosma myriantha, a tree species native to East Asia (China, Japan, and Korea), is vulnerable to three rust species: Neophysopella meliosmae, N. meliosmae-myrianthae, and N. vitis. The early symptoms of infection are indistinguishable between these species, making an accurate and rapid diagnosis challenging. The urediniospores of N. meliosmae-myrianthae and N. vitis are also known to infect economically relevant grapevines (Vitis spp.) and ivies (Parthenocissus spp.), respectively, rendering early detection and identification even more important. To address this issue, we developed a multiplex quantitative polymerase chain reaction assay equipped with TaqMan probes targeting the internal transcribed spacer rDNA sequences specific to the three rust pathogens. This assay successfully detected minute quantities (5 fg for N. meliosmae-myrianthae and 50 fg for N. meliosmae and N. vitis) of DNA from the three Neophysopella species and demonstrated consistent reliability when applied to fresh and herbarium samples collected from M. myriantha, grapevines, and ivies. In conclusion, this novel assay is a rapid and robust diagnostic tool for the three rust pathogens, N. meliosmae, N. meliosmae-myrianthae, and N. vitis, and offers the potential to identify and detect their global movement and spread to grapevines, ivies, and trees.


Subject(s)
Basidiomycota , DNA, Fungal , Multiplex Polymerase Chain Reaction , Plant Diseases , Basidiomycota/genetics , Basidiomycota/isolation & purification , Basidiomycota/classification , Plant Diseases/microbiology , DNA, Fungal/genetics , Multiplex Polymerase Chain Reaction/methods , DNA, Ribosomal Spacer/genetics , Real-Time Polymerase Chain Reaction/methods , Reproducibility of Results , Vitis/microbiology
15.
J Ind Microbiol Biotechnol ; 50(1)2023 Feb 17.
Article in English | MEDLINE | ID: mdl-37580133

ABSTRACT

Astaxanthin has high utilization value in functional food because of its strong antioxidant capacity. However, the astaxanthin content of Phaffia rhodozyma is relatively low. Adaptive laboratory evolution is an excellent method to obtain high-yield strains. TiO2 is a good inducer of oxidative stress. In this study, different concentrations of TiO2 were used to domesticate P. rhodozyma, and at a concentration of 1000 mg/L of TiO2 for 105 days, the optimal strain JMU-ALE105 for astaxanthin production was obtained. After fermentation, the astaxanthin content reached 6.50 mg/g, which was 41.61% higher than that of the original strain. The ALE105 strain was fermented by batch and fed-batch, and the astaxanthin content reached 6.81 mg/g. Transcriptomics analysis showed that the astaxanthin synthesis pathway, and fatty acid, pyruvate, and nitrogen metabolism pathway of the ALE105 strain were significantly upregulated. Based on the nitrogen metabolism pathway, the nitrogen source was adjusted by ammonium sulphate fed-batch fermentation, which increased the astaxanthin content, reaching 8.36 mg/g. This study provides a technical basis and theoretical research for promoting industrialization of astaxanthin production of P. rhodozyma. ONE-SENTENCE SUMMARY: A high-yield astaxanthin strain (ALE105) was obtained through TiO2 domestication, and its metabolic mechanism was analysed by transcriptomics, which combined with nitrogen source regulation to further improve astaxanthin yield.


Subject(s)
Xanthophylls , Directed Molecular Evolution , Gene Expression Profiling , Basidiomycota/chemistry , Basidiomycota/classification , Basidiomycota/genetics , Basidiomycota/growth & development , Biomass , Glucose/analysis , Carotenoids/analysis , Fermentation , Batch Cell Culture Techniques , Nitrogen/metabolism , Xanthophylls/chemistry , Xanthophylls/metabolism
16.
Article in English | MEDLINE | ID: mdl-37022743

ABSTRACT

Four strains (NYNU 178247, NYNU 178251, DMKU-PAL160 and DMKU-PAL137) representing a novel yeast species were isolated from the external surfaces of rice and pineapple leaves collected in China and Thailand. Phylogenetic analysis based on the concatenated sequences of the internal transcribed spacer (ITS) regions and the D1/D2 domains of the large subunit rRNA gene revealed that the novel species belonged to the genus Spencerozyma. The D1/D2 sequence of the novel species differed from its closest relative, Spencerozyma acididurans SYSU-17T, by 3.2 % sequence divergence. The species also differed from Spencerozyma crocea CBS 2029T and Spencerozyma siamensis DMKU13-2T, by 3.0-6.9 % sequence divergence in the D1/D2 sequences out of 592 bp. In the ITS regions, the novel species displayed 19.8-29.2% sequence divergence from S. acididurans SYSU-17T, S. crocea CBS 2029T and S. siamensis DMKU13-2T out of 655 bp. Furthermore, the novel species could also be differentiated from the closely related species by some physiological characteristics. The species name of Spencerozyma pingqiaoensis sp. nov. (Holotype CBS 15238, Mycobank MB 844734) is proposed to accommodate these four strains.


Subject(s)
Ananas , Basidiomycota , Oryza , Phylogeny , Base Composition , China , DNA, Fungal/genetics , DNA, Ribosomal Spacer/genetics , Mycological Typing Techniques , Oryza/microbiology , Plant Leaves/microbiology , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA , Basidiomycota/classification , Basidiomycota/isolation & purification , Ananas/microbiology
17.
J Vet Med Sci ; 85(3): 271-278, 2023 Mar 01.
Article in English | MEDLINE | ID: mdl-36653148

ABSTRACT

Koalas are iconic mammals indigenous to Australia. These rare animals and their habitats are occasionally associated with pathogenic fungi, including species of Cryptococcus, and consequently, monitoring the mycobiota of areas inhabited by koalas is of considerable importance. In this report, we describe a novel basidiomycetous yeast isolated from a site in Kanazawa Zoo, Japan, associated with captive koalas. Swab samples were collected from koala breeding environments, from which we isolated a novel unencapsulated yeast characterized by ovoid to ellipsoidal cells (3.2-4.9 × 3.5-5 µm). These cells were observed to undergo polar budding and grow as parent bud pairs, with an optimal growth temperature of 28°C. Colonies grown on yeast extract peptone dextrose agar at 28°C have a characteristic coral pink color. On the basis of physiological, morphological, and molecular characters, the new species was placed in the genus Begerowomyces, and the name Begerowomyces aurantius JCM33898T(LSEM1333T=CBS16241T) is proposed.


Subject(s)
Basidiomycota , Phascolarctidae , Phylogeny , Animals , Ecosystem , Phascolarctidae/microbiology , Basidiomycota/classification , Basidiomycota/isolation & purification , Animals, Zoo/microbiology
18.
Anal Chem ; 94(32): 11216-11223, 2022 08 16.
Article in English | MEDLINE | ID: mdl-35920602

ABSTRACT

Lipase found in the gut microbiota participates in the digestion and absorption of dietary fats. As such, the gut microbiota is involved in the regulation of the host metabolism, affecting the levels of lipids and free fatty acids, ultimately resulting in obesity. In this study, an enzymatic activatable near-infrared fluorescent probe, DDAO-C6, was developed for visually sensing endogenous lipase from gut microbes. Using DDAO-C6, a cultivated intestinal yeast strain was rapidly identified from human feces that exhibited high lipase expression and was identified as Trichosporon asahii Y2. We then determined that the colonization of the gut of mice with T. asahii Y2 increased lipase activity in the digestive tract and promoted obesity and hyperlipidemia when the mice were fed high fat diets. Above all, the present research resulted in a fluorescence visualization tool for the functional investigation of gut microbiota associated with obesity and disorders of lipid metabolism.


Subject(s)
Basidiomycota , Fluorescent Dyes , Obesity , Animals , Basidiomycota/classification , Diet, High-Fat , Humans , Lipase , Mice , Mice, Inbred C57BL , Obesity/microbiology , Yeasts
19.
Int J Med Mushrooms ; 24(4): 53-62, 2022.
Article in English | MEDLINE | ID: mdl-35695596

ABSTRACT

Mushrooms are rich in various nutrients and secondary metabolites. In this study, the contents of macroelements, trace elements, and some nonessential elements of wild basidiocarps of Fuscoporia torulosa, Inonotus pachyphloeus, Phellinus allardii, Ph. fastuosus, Ph. gilvus, and Ph. sanfordii (Hymenochaetaceae) collected from India was determined with wavelength dispersive X-ray fluorescence spectrometry. Vitamins A, C, D2, and E (α-tocopherol) contents were analyzed with high-performance liquid chromatography and titration methods. Ph. gilvus contained the highest number (n = 21) and highest content of most of the elements. The mushrooms were rich in microelements, including Ca (80-2610 mg/kg dw), Cl (39.63-240 mg/kg dw), K (246.7-2620 mg/kg dw), Mg (96.6-500 mg/kg dw), Na (9.56-56 mg/kg dw), P (39.5-126.7 mg/kg dw), and S (69.37-170 mg/kg dw). Many trace elements (Co, Cr, Cu, Fe, Mn, Mo, Ni, Si, V, and Zn) and some nonessential elements (Al, Ba, Br, Rb, Sr, Ti, and Zr) were also detected in the mushroom species tested. There was a significant (P < 0.05) correlation (r > 0.9) between Al and Fe as well as Cu and Ti pairs. Correlation data provide an indication of interrelations between any two elements. Among vitamins, C (9.32 mg/100 g dw) and D2 (1.55 mg/100 g dw) were found in the highest amount in F. torulosa, while the lowest vitamin contents were present in Ph. fastuosus and Ph. allardii, respectively. Vitamins A and E were below the quantification limits. These results will be beneficial in deciding on the amount of these mushrooms in nutraceutical and drug formulations.


Subject(s)
Basidiomycota/chemistry , Minerals/analysis , Trace Elements/analysis , Vitamins/analysis , Basidiomycota/classification , Fruiting Bodies, Fungal/chemistry , India
20.
Article in English | MEDLINE | ID: mdl-35225759

ABSTRACT

Eight yeast isolates with an affinity to the genus Tremella were obtained from bromeliads from different locations in Brazil. Although the formation of basidia and basidiocarp were not observed, on the basis of the results of sequence analysis of the D1/D2 domain of the large subunit (LSU) rRNA gene and internal transcribed spacer (ITS) region, we suggest that these isolates represent two novel species of the genus Tremella. These yeasts are phylogenetically related to Tremella saccharicola and Tremella globispora. Therefore, we propose Tremella ananatis sp. nov. and Tremella lamprococci sp. nov. as novel yeast species of the order Tremellales (Agaricomycotina, Basidiomycota). Sequence analysis revealed that Tremella ananatis sp. nov. differs by 11 and 28 nucleotide substitutions from Tremella saccharicola in the D1/D2 sequence and ITS region, respectively. Moreover, Tremella lamprococci sp. nov. differs by 15 and 29 nucleotide substitutions from Tremella globispora in the D1/D2 sequence and ITS region, respectively. The holotypes of Tremella ananatis sp. nov. and Tremella lamprococci sp. nov. are CBS 14568T and CBS 14567T, and the MycoBank numbers are MB840480 and MB840481, respectively.


Subject(s)
Basidiomycota , Bromeliaceae/microbiology , Phylogeny , Base Composition , Basidiomycota/classification , Basidiomycota/isolation & purification , DNA, Fungal/genetics , DNA, Ribosomal Spacer/genetics , Mycological Typing Techniques , Sequence Analysis, DNA
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