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1.
Sci Rep ; 14(1): 10601, 2024 05 08.
Article in English | MEDLINE | ID: mdl-38719921

ABSTRACT

A plant parasite associated with the white haze disease in apples, the Basidiomycota Gjaerumia minor, has been found in most samples of the global bathypelagic ocean. An analysis of environmental 18S rDNA sequences on 12 vertical profiles of the Malaspina 2010 expedition shows that the relative abundance of this cultured species increases with depth while its distribution is remarkably different between the deep waters of the Pacific and Atlantic oceans, being present in higher concentrations in the former. This is evident from sequence analysis and a microscopic survey with a species-specific newly designed TSA-FISH probe. Several hints point to the hypothesis that G. minor is transported to the deep ocean attached to particles, and the absence of G. minor in bathypelagic Atlantic waters could then be explained by the absence of this organism in surface waters of the equatorial Atlantic. The good correlation of G. minor biomass with Apparent Oxygen Utilization, recalcitrant carbon and free-living prokaryotic biomass in South Pacific waters, together with the identification of the observed cells as yeasts and not as resting spores (teliospores), point to the possibility that once arrived at deep layers this species keeps on growing and thriving.


Subject(s)
Basidiomycota , Pacific Ocean , Basidiomycota/genetics , Basidiomycota/isolation & purification , Basidiomycota/classification , RNA, Ribosomal, 18S/genetics , Seawater/microbiology , Phylogeny , Atlantic Ocean , DNA, Ribosomal/genetics , DNA, Fungal/genetics
2.
Environ Microbiol Rep ; 16(3): e13213, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38738810

ABSTRACT

Since a significant proportion of plant matter is consumed by herbivores, a necessary adaptation for many phyllosphere microbes could be to survive through the guts of herbivores. While many studies explore the gut microbiome of herbivores by surveying the microbiome in their frass, few studies compare the phyllosphere microbiome to the gut microbiome of herbivores. High-throughput metabarcode sequencing was used to track the fungal community from milkweed (Asclepias spp.) leaves to monarch caterpillar frass. The most commonly identified fungal taxa that dominated the caterpillar frass after the consumption of leaves were yeasts, mostly belonging to the Basidiomycota phylum. While most fungal communities underwent significant bottlenecks and some yeast taxa increased in relative abundance, a consistent directional change in community structure was not identified from leaf to caterpillar frass. These results suggest that some phyllosphere fungi, especially diverse yeasts, can survive herbivory, but whether herbivory is a key stage of their life cycle remains uncertain. For exploring phyllosphere fungi and the potential coprophilous lifestyles of endophytic and epiphytic fungi, methods that target yeast and Basidiomycota fungi are recommended.


Subject(s)
Asclepias , Fungi , Herbivory , Plant Leaves , Animals , Plant Leaves/microbiology , Asclepias/microbiology , Fungi/classification , Fungi/genetics , Fungi/isolation & purification , Fungi/physiology , Yeasts/classification , Yeasts/isolation & purification , Yeasts/genetics , Mycobiome , Basidiomycota/classification , Basidiomycota/genetics , Basidiomycota/physiology , Basidiomycota/isolation & purification , Gastrointestinal Microbiome , Larva/microbiology , Moths/microbiology
3.
Article in English | MEDLINE | ID: mdl-38780584

ABSTRACT

Four yeast strains belonging to the basidiomycetous yeast genus Mrakia were isolated from diverse habitats in the Ny-Ålesund region (Svalbard, High Arctic): two from vascular plants, one from seawater and one from freshwater. Phylogenetic analysis, based on the ITS region and the D1/D2 domain of the 28S rRNA gene, identified these four strains as representing two novel species within the genus Mrakia. The names Mrakia polaris sp. nov. (MycoBank number: MB 852063) and Mrakia amundsenii sp. nov. (MycoBank number: MB 852064) are proposed. These two new species show distinct psychrophilic adaptations, as they exhibit optimal growth at temperatures between 10 and 15°C, while being unable to grow at 25°C. The holotype of M. polaris sp. nov. is CPCC 300345T, and the holotype of M. amundsenii sp. nov. is CPCC 300572T.


Subject(s)
DNA, Fungal , Phylogeny , Seawater , Sequence Analysis, DNA , Arctic Regions , DNA, Fungal/genetics , Seawater/microbiology , Mycological Typing Techniques , Svalbard , RNA, Ribosomal, 28S/genetics , Basidiomycota/genetics , Basidiomycota/classification , Basidiomycota/isolation & purification , Fresh Water/microbiology , Ecosystem , Cold Temperature , Saccharomycetales/classification , Saccharomycetales/genetics , Saccharomycetales/isolation & purification
4.
Mycologia ; 116(3): 418-430, 2024.
Article in English | MEDLINE | ID: mdl-38530332

ABSTRACT

In 1895 and 2001, rust fungi affecting Licania trees (Chrysobalanchaceae) in Brazil were described as Uredo licaniae by Hennings in the state of Goiás and as Phakopsora tomentosae by Ferreira et al. in the state of Amazonas, respectively. Recently, a Licania rust fungus collected close to the Amazonian type location sharing symptoms with the former two species was subjected to morphological examinations and molecular phylogenetic analyses using 28S nuc rDNA (ITS2-28S) and cytochrome c oxidase subunit III (CO3) gene sequences. Since the original type specimen of Ph. tomentosae is considered lost, we carefully reviewed the type description and questioned the identity of the telium, which justified the description of the fungus as a Phakopsora species. Furthermore, the additional revision of the type material described by Hennings revealed that Ph. tomentosae is a synonym of U. licaniae. Based on the morphological examinations, disease symptoms, and shared hosts, we concluded that the newly collected material is conspecific with U. licaniae. However, the phylogenetic analyses rejected allocation in Phakopsora and instead assigned the Licania rust fungus in a sister relationship with Austropuccinia psidii (Sphaerophragmiaceae), the causal agent of the globally invasive myrtle rust pathogen. We therefore favored a recombination of U. licaniae (syn. Ph. tomentosae) into Austropuccinia and proposed the new name Austropuccina licaniae for the second species now identified for this genus. The fungus shares conspicuous symptoms with A. psidii, causing often severe infections of growing leaves and shoots that lead to leaf necrosis, leaf shedding, and eventually to the dieback of entire shoots. In view of the very similar symptoms of its aggressively invasive sister species, we briefly discuss the current state of knowledge about A. licaniae and the potential risks, and the opportunity of its identification.


Subject(s)
Basidiomycota , DNA, Fungal , Phylogeny , Plant Diseases , Basidiomycota/genetics , Basidiomycota/classification , Basidiomycota/isolation & purification , Plant Diseases/microbiology , DNA, Fungal/genetics , Brazil , Sequence Analysis, DNA , RNA, Ribosomal, 28S/genetics , DNA, Ribosomal/genetics , DNA, Ribosomal Spacer/genetics , Electron Transport Complex IV/genetics , Trees/microbiology
5.
Rev. iberoam. micol ; 40(4): 51-53, Oct.-Dic. 2023. ilus, tab
Article in English | IBECS | ID: ibc-230745

ABSTRACT

Background The clinical significance of the filamentous basidiomycetes isolated from clinical samples is not always clear. Thus, these fungi have been considered environmental contaminants traditionally. Aims To review those clinical cases in which filamentous basidiomycetes from respiratory samples had been isolated. Methods The retrospective study was carried out in a single tertiary care hospital. We recovered all culture-confirmed isolations of filamentous basidiomycetes from respiratory samples (bronchial aspirate [BAS], bronchoalveolar lavage [BAL] and sputum) analyzed between the years 2020 and 2023. Isolates were identified by ITS region sequencing. Results In six patients a filamentous basidiomycete had been isolated from a respiratory sample. The species identified were all different: Fomitopsis sp. (BAS), Trametes ljubarskyi (BAL), Stereum gausapatum (BAS), Porostereum spadiaceum (BAS), Phlebia subserialis (sputum) and Inonotus levis (BAL). All the patients were immunosuppressed or had an underlying disease with pulmonary involvement. None of them received any specific antifungal treatment (in relation with the fungus isolated) and all six improved clinically and were discharged. Conclusions The isolation of filamentous basidiomycetes in these patients had uncertain clinical significance. However, the isolation of any filamentous basidiomycete in respiratory samples from immunosuppressed patients or patients with chronic pulmonary disease is an emerging situation that should be carefully assessed in the context of chronic allergic episodes or suspicion of invasive fungal infections. (AU)


Antecedentes La importancia clínica de los basidiomicetos filamentosos procedentes de muestras clínicas no siempre es clara. Por ello, estos hongos se han considerado tradicionalmente como contaminantes ambientales. Objetivos Describir las características de los pacientes con aislamientos de basidiomicetos filamentosos en muestras respiratorias para intentar aclarar el significado clínico de estos hallazgos. Métodos Se realizó un estudio retrospectivo en nuestro hospital de tercer nivel; fueron incluidos pacientes con el aislamiento de un basidiomiceto filamentoso confirmado en cultivo a partir de una muestra respiratoria (aspirados bronquiales [BAS], lavados broncoalveolares [BAL] y esputos) procesadas entre los años 2020 y 2023. Realizamos la identificación molecular del aislamiento mediante la secuenciación de la región ITS. Resultados En seis pacientes se obtuvo un aislamiento de basidiomiceto filamentoso de una muestra respiratoria, y los seis aislamientos pertenecían a diferentes géneros: Fomitopsis sp. (BAS), Trametes ljubarskyi (BAL), Stereum gausapatum (BAS), Porostereum spadiaceum (BAS), Phlebia subserialis (esputo) e Inonotus levis (BAL). Todos los pacientes sufrían inmunosupresión o alguna enfermedad de base con afectación pulmonar. Ninguno de ellos recibió tratamiento antifúngico específico (en relación con el aislamiento recuperado de la muestra) y finalmente fueron dados de alta tras la mejoría clínica. Conclusiones Los aislamientos de basidiomicetos filamentosos en nuestros pacientes tuvieron un significado clínico incierto. Sin embargo, en los pacientes inmunodeprimidos o con enfermedades pulmonares crónicas, el aislamiento de un basidiomiceto filamentoso en el tracto respiratorio inferior representa una situación emergente que debe evaluarse cuidadosamente en el contexto de un episodio alérgico crónico o ante la sospecha de una infección fúngica invasiva. (AU)


Subject(s)
Humans , Basidiomycota/isolation & purification , Air Samples , Hospitals , Spain , Sputum
6.
Curr Microbiol ; 80(11): 350, 2023 Sep 21.
Article in English | MEDLINE | ID: mdl-37735278

ABSTRACT

Ten white-rot fungal isolates were evaluated for the decolorization potential of pulp and paper mill effluent. Trametes elegans PP17-06, Pseudolagarobasidium sp. PP17-33, and Microporus sp.2 PP17-20 showed the highest decolorization efficiencies between 42 and 54% in 5 d. To reveal the mechanisms involved in decolorization and assess the long-term performance, PP17-06, which showed the highest decolorization efficiency, was further investigated. It could reduce the ADMI color scale by 63.6% in 10 d. However, extending the treatment period for more than 10 d did not significantly enhance the decolorization efficiencies. The maximum MnP activity of 3.27 U L-1 was observed on the 6 d during the biodegradation. In comparison, laccase activities were low with the maximum activity of 0.38 U L-1 (24 d). No significant LiP activities were monitored during the experiment. Dead fungal biomass showed an optimum decolorization efficiency of 44.18% in 8 d employing the biosorption mechanism. No significant changes in the decolorization efficiency were observed after that, suggesting the equilibrium status was reached. These results revealed that PP17-06 has the potential to decolorize pulp and paper mill effluent by employing both biodegradation and biosorption processes.


Subject(s)
Basidiomycota , Biodegradation, Environmental , Paper , Biomass , Polyporales/isolation & purification , Trametes/isolation & purification , Manufacturing Industry , Polyporaceae/isolation & purification , Basidiomycota/isolation & purification , Basidiomycota/physiology , Adsorption
7.
Article in English | MEDLINE | ID: mdl-37022743

ABSTRACT

Four strains (NYNU 178247, NYNU 178251, DMKU-PAL160 and DMKU-PAL137) representing a novel yeast species were isolated from the external surfaces of rice and pineapple leaves collected in China and Thailand. Phylogenetic analysis based on the concatenated sequences of the internal transcribed spacer (ITS) regions and the D1/D2 domains of the large subunit rRNA gene revealed that the novel species belonged to the genus Spencerozyma. The D1/D2 sequence of the novel species differed from its closest relative, Spencerozyma acididurans SYSU-17T, by 3.2 % sequence divergence. The species also differed from Spencerozyma crocea CBS 2029T and Spencerozyma siamensis DMKU13-2T, by 3.0-6.9 % sequence divergence in the D1/D2 sequences out of 592 bp. In the ITS regions, the novel species displayed 19.8-29.2% sequence divergence from S. acididurans SYSU-17T, S. crocea CBS 2029T and S. siamensis DMKU13-2T out of 655 bp. Furthermore, the novel species could also be differentiated from the closely related species by some physiological characteristics. The species name of Spencerozyma pingqiaoensis sp. nov. (Holotype CBS 15238, Mycobank MB 844734) is proposed to accommodate these four strains.


Subject(s)
Ananas , Basidiomycota , Oryza , Phylogeny , Base Composition , China , DNA, Fungal/genetics , DNA, Ribosomal Spacer/genetics , Mycological Typing Techniques , Oryza/microbiology , Plant Leaves/microbiology , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA , Basidiomycota/classification , Basidiomycota/isolation & purification , Ananas/microbiology
8.
J Vet Med Sci ; 85(3): 271-278, 2023 Mar 01.
Article in English | MEDLINE | ID: mdl-36653148

ABSTRACT

Koalas are iconic mammals indigenous to Australia. These rare animals and their habitats are occasionally associated with pathogenic fungi, including species of Cryptococcus, and consequently, monitoring the mycobiota of areas inhabited by koalas is of considerable importance. In this report, we describe a novel basidiomycetous yeast isolated from a site in Kanazawa Zoo, Japan, associated with captive koalas. Swab samples were collected from koala breeding environments, from which we isolated a novel unencapsulated yeast characterized by ovoid to ellipsoidal cells (3.2-4.9 × 3.5-5 µm). These cells were observed to undergo polar budding and grow as parent bud pairs, with an optimal growth temperature of 28°C. Colonies grown on yeast extract peptone dextrose agar at 28°C have a characteristic coral pink color. On the basis of physiological, morphological, and molecular characters, the new species was placed in the genus Begerowomyces, and the name Begerowomyces aurantius JCM33898T(LSEM1333T=CBS16241T) is proposed.


Subject(s)
Basidiomycota , Phascolarctidae , Phylogeny , Animals , Ecosystem , Phascolarctidae/microbiology , Basidiomycota/classification , Basidiomycota/isolation & purification , Animals, Zoo/microbiology
9.
Article in English | MEDLINE | ID: mdl-35225759

ABSTRACT

Eight yeast isolates with an affinity to the genus Tremella were obtained from bromeliads from different locations in Brazil. Although the formation of basidia and basidiocarp were not observed, on the basis of the results of sequence analysis of the D1/D2 domain of the large subunit (LSU) rRNA gene and internal transcribed spacer (ITS) region, we suggest that these isolates represent two novel species of the genus Tremella. These yeasts are phylogenetically related to Tremella saccharicola and Tremella globispora. Therefore, we propose Tremella ananatis sp. nov. and Tremella lamprococci sp. nov. as novel yeast species of the order Tremellales (Agaricomycotina, Basidiomycota). Sequence analysis revealed that Tremella ananatis sp. nov. differs by 11 and 28 nucleotide substitutions from Tremella saccharicola in the D1/D2 sequence and ITS region, respectively. Moreover, Tremella lamprococci sp. nov. differs by 15 and 29 nucleotide substitutions from Tremella globispora in the D1/D2 sequence and ITS region, respectively. The holotypes of Tremella ananatis sp. nov. and Tremella lamprococci sp. nov. are CBS 14568T and CBS 14567T, and the MycoBank numbers are MB840480 and MB840481, respectively.


Subject(s)
Basidiomycota , Bromeliaceae/microbiology , Phylogeny , Base Composition , Basidiomycota/classification , Basidiomycota/isolation & purification , DNA, Fungal/genetics , DNA, Ribosomal Spacer/genetics , Mycological Typing Techniques , Sequence Analysis, DNA
10.
Plant Dis ; 106(1): 107-113, 2022 Jan.
Article in English | MEDLINE | ID: mdl-34261359

ABSTRACT

Several species from the genus Quambalaria (order Microstromatales) cause diseases on eucalypts (Eucalyptus and related genera) both in plantations and natural ecosystems. We developed real-time quantitative PCR (qPCR) assays to rapidly detect and distinguish five Quambalaria species. The design of the species-specific qPCR assay for each species, Q. pitereka (PIT), Q. coyrecup (COR), Q. cyanescens (CYN), Q. pusilla (PUS), and Q. eucalypti (EUC), was based on the ITS region and was evaluated for specificity and sensitivity. The PIT, COR, and CYN qPCR assays could amplify as little as 10 fg µl-1 from pure cultures, whereas PUS and EUC qPCR assays could amplify 100 fg µl-1 of their target species. The PIT, COR, and CYN qPCR assays were further validated using naturally and artificially infected samples of their plant host Corymbia calophylla. These assays will be used for rapid diagnostics and future experiments on the infection process.


Subject(s)
Basidiomycota , Eucalyptus , Basidiomycota/isolation & purification , Ecosystem , Eucalyptus/microbiology , Plant Diseases/microbiology , Real-Time Polymerase Chain Reaction
12.
Viruses ; 13(11)2021 11 12.
Article in English | MEDLINE | ID: mdl-34835075

ABSTRACT

Partitiviruses are one of the most prevalent double-stranded RNA viruses that have been identified mostly in filamentous fungi and plants. Partitiviruses generally infect host fungi asymptomatically but infrequently exert significant effect(s) on morphology and virulence, thus being considered a potential source of biological control agents against pathogenic fungi. In this study, we performed a screening for mycoviruses of a collection of Thai isolates of rice fungal pathogen Rhizoctonia oryzae-sativae, a causal agent of rice aggregated sheath spot disease. As a result, 36% of tested isolates carried potentially viral double-stranded RNAs with sizes ranging from 2 to 3 kbp. By conventional cDNA library construction and RNA-seq, we determined six new alphapartitiviruses that infected three isolates: tentatively named Rhizoctonia oryzae-sativae partitivirus 1 to 6 (RosPV1-6). Furthermore, RT-PCR detection of each virus revealed their omnipresent nature in different R. oryzae-sativae isolates. Although virus-curing of basidiomycetous fungi is generally difficult, our repeated attempts successfully obtained virus-free (for RosPV1, RosPV2, and uncharacterized partitiviruses), isogenic strain of R. oryzae-sativae TSS190442. The virus-cured strain showed slightly faster colony growth on the synthetic media and severe symptom development on the rice sheath compared to its virus-infected counterpart. Overall, this study shed light on the distribution of partitiviruses in R. oryzae-sativae in a paddy environment and exemplified a virus-curing protocol that may be applicable for other basidiomycetous fungi.


Subject(s)
Basidiomycota/virology , Double Stranded RNA Viruses/isolation & purification , Fungal Viruses/isolation & purification , Oryza/microbiology , Plant Diseases/microbiology , Amino Acid Sequence , Basidiomycota/isolation & purification , Basidiomycota/pathogenicity , Double Stranded RNA Viruses/classification , Double Stranded RNA Viruses/genetics , Fungal Viruses/classification , Fungal Viruses/genetics , Genome, Viral/genetics , Phylogeny , RNA, Viral/genetics , Thailand , Viral Proteins/genetics , Virulence
13.
Int J Syst Evol Microbiol ; 71(11)2021 Nov.
Article in English | MEDLINE | ID: mdl-34726589

ABSTRACT

During studies of yeasts associated with soil in a Cerrado-Atlantic Rain Forest ecotone site in Brazil, three orange-pigmented yeast strains were isolated from samples collected in Minas Gerais state, Brazil. Molecular analyses combining the 26S rRNA gene (D1/D2 domains) and the internal transcribed spacer (ITS) sequences as well as whole-genome sequence data showed that these strains could not be ascribed to any known species in the basidiomycetous genus Phaffia, and thus they are considered to represent a novel species for which the name Phaffia brasiliana sp. nov. is proposed. The holotype is CBS 16121T and the MycoBank number is MB 839315. The occurrence of P. brasiliana in a tropical region is unique for the genus, since all other species occur in temperate regions. Two factors appear to contribute to the distribution of the novel taxon: first, the region where it was found has relatively moderate temperature ranges and, second, an adaptation to grow or withstand temperatures higher than those of the other species in the genus seems to be in place.


Subject(s)
Basidiomycota/classification , Phylogeny , Rainforest , Soil Microbiology , Basidiomycota/isolation & purification , Brazil , DNA, Fungal/genetics , DNA, Ribosomal Spacer/genetics , Mycological Typing Techniques , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA
14.
Braz J Microbiol ; 52(4): 2085-2089, 2021 Dec.
Article in English | MEDLINE | ID: mdl-34545554

ABSTRACT

Fungal infections are responsible for high morbidity and mortality in neonatal patients, especially in premature newborns. Infections in neonates caused by Cryptococcus spp. are rare, but it has occurred in an immunocompromised population. This study aims to describe the isolation of Cryptococcus liquefaciens from the hands of a health professional in a neonatal intensive care unit, and to evaluate the production of biofilm and virulence factors and susceptibility to antifungals. Antifungal susceptibility tests were performed according to Clinical and Laboratory Standard Institute document M27-A3. Thermotolerance virulence factors and DNase, phospholipase, proteinase, and hemolytic activities were verified through phenotypic tests; biofilm was evaluated by determining the metabolic activity and biomass. The isolate did not produce any of the tested enzymes and was susceptible to all antifungals (amphotericin B, fluconazole, and micafungin). The growth at 37 °C was very weak; however, the isolate showed a strong biomass production and low metabolic activity. This is the first report of C. liquefaciens isolated from the hands of a health professional. The isolate did not express any of the studied virulence factors in vitro, except for the low growth at 37 °C in the first 48 h, and the strong production of biofilm biomass. Cryptococcus liquefaciens can remain in the environment for a long time and is a human pathogen because it tolerates temperature variations. This report draws attention to the circulation of rare species in critical locations, information that may help in a fast and correct diagnosis and, consequently, implementation of an appropriate treatment.


Subject(s)
Basidiomycota , Intensive Care Units, Neonatal , Antifungal Agents/pharmacology , Basidiomycota/isolation & purification , Basidiomycota/pathogenicity , Basidiomycota/physiology , Fluconazole/pharmacology , Health Personnel , Humans , Infant, Newborn , Microbial Sensitivity Tests , Virulence Factors/genetics
15.
Medicine (Baltimore) ; 100(29): e26688, 2021 Jul 23.
Article in English | MEDLINE | ID: mdl-34398040

ABSTRACT

RATIONALE: Fungal keratitis (FK) is a severe vision-threatening disease that can lead to corneal perforation or endophthalmitis despite proper treatment. It is important to diagnose the disease promptly due to its indolent nature and disproportionate disease symptoms. Trichosporon asahii is reported rarely as the causative organism of FK. We report a case of highly unusual bilateral T asahii keratitis following ptosis surgery. PATIENT CONCERNS: An 86-year-old female underwent bilateral levator resection surgery for ptosis. Postoperatively, the patient complained of gradually worsening bilateral ocular pain and a decrease in visual acuity associated with a chronic non-healing epithelial defect. DIAGNOSES: Both eyes of the patient were evaluated using best-corrected visual acuity, intraocular pressure, slit-lamp examination, fundus examination, and corneal culture. Multifocal deep stromal infiltrates were found in both corneas. Cultures from both corneal ulcers revealed growth of T asahii. Optical coherence tomographic examination showed bilateral macular edema. INTERVENTIONS: The patient was treated with revisional ptosis surgery, an antifungal agent for the corneal ulcer, and intravitreal injection of steroid for macular edema. OUTCOMES: Both eyes recovered well. Her best-corrected visual acuity improved from 20/200 to 20/40 in the right eye and from 20/100 to 20/40 in the left eye. LESSONS: FK can develop in the cornea when certain risk factors are present, including recent lid surgery, chronic keratitis, and steroid eye drop use. Identification and correction of risk factors can be beneficial in the treatment of FK.


Subject(s)
Basidiomycota/isolation & purification , Blepharoptosis/surgery , Eye Infections, Fungal/diagnosis , Aged, 80 and over , Antifungal Agents/administration & dosage , Antifungal Agents/therapeutic use , Diagnosis, Differential , Eye Infections, Fungal/drug therapy , Female , Humans , Ophthalmic Solutions , Postoperative Complications/diagnosis , Postoperative Complications/drug therapy
16.
Article in English | MEDLINE | ID: mdl-34214028

ABSTRACT

Sporobolomyces lactosus is a pink yeast-like fungus that is not congeneric with other members of Sporobolomyces (Basidiomycota, Microbotryomycetes, Sporidiobolales). During our ongoing studies of pink yeasts we determined that S. lactosus was most closely related to Pseudeurotium zonatum (Ascomycota, Leotiomycetes, Thelebolales). A molecular phylogenetic analysis using sequences of the ITS region and the small and large subunit (SSU, LSU) rRNA genes, indicated that four isolates of S. lactosus, including three ex-type isolates, were placed in Thelebolales with maximum support. A new genus is proposed to accommodate S. lactosus, Inopinatum. This is the first pink yeast reported in Leotiomycetes.


Subject(s)
Basidiomycota/classification , Phylogeny , Basidiomycota/isolation & purification , DNA, Fungal/genetics , Pigmentation , Poland , RNA, Ribosomal/genetics , Sequence Analysis, DNA
17.
Mycoses ; 64(8): 817-822, 2021 Aug.
Article in English | MEDLINE | ID: mdl-34091966

ABSTRACT

OBJECTIVES: To investigate the occurrence of Trichosporon asahii fungemia among critically ill COVID-19 patients. METHODS: From 1 July to 30 September 2020, cases of T asahii fungemia (TAF) in a Brazilian COVID-19 referral centre were investigated. The epidemiology and clinical courses were detailed, along with a mycological investigation that included molecular species identification, haplotype diversity analysis and antifungal susceptibility testing. RESULTS: Five critically ill COVID-19 patients developed TAF in the period. All five patients had common risk conditions for TAF: central venous catheter at fungemia, previous exposure to broad-spectrum antibiotics, prior echinocandin therapy and previous prolonged corticosteroid therapy. The average time of intensive care unit hospitalisation previous to the TAF episode was 23 days. All but one patient had voriconazole therapy, and TAF 30-day mortality was 80%. The five T asahii strains from the COVID-19 patients belonged to 4 different haplotypes, mitigating the possibility of skin origin and cross-transmission linking the 5 reported episodes. The antifungal susceptibility testing revealed low minimal inhibitory concentrations for azole derivatives. CONCLUSIONS: Judicious prescription of antibiotics, corticosteroids and antifungals needs to be discussed in critically ill COVID-19 patients to prevent infections by hard-to-treat fungi like T asahii.


Subject(s)
Adrenal Cortex Hormones/administration & dosage , Antifungal Agents/administration & dosage , Basidiomycota/isolation & purification , COVID-19/complications , Superinfection/complications , Trichosporonosis/complications , Adrenal Cortex Hormones/pharmacology , Aged , Antifungal Agents/pharmacology , Basidiomycota/classification , Basidiomycota/drug effects , Basidiomycota/genetics , Brazil/epidemiology , COVID-19/epidemiology , Candidemia/complications , Female , Fungemia/complications , Haplotypes , Humans , Male , Microbial Sensitivity Tests , Middle Aged , Phylogeny , Risk Factors , Superinfection/epidemiology , Trichosporonosis/epidemiology
18.
Sci Rep ; 11(1): 11611, 2021 06 02.
Article in English | MEDLINE | ID: mdl-34078985

ABSTRACT

Tilletia controversa causing dwarf bunt of wheat is a quarantine pathogen in several countries. Therefore, its specific detection is of great phytosanitary importance. Genomic regions routinely used for phylogenetic inferences lack suitable polymorphisms for the development of species-specific markers. We therefore compared 21 genomes of six Tilletia species to identify DNA regions that were unique and conserved in all T. controversa isolates and had no or limited homology to other Tilletia species. A loop-mediated isothermal amplification (LAMP) assay for T. controversa was developed based on one of these DNA regions. The specificity of the assay was verified using 223 fungal samples comprising 43 fungal species including 11 Tilletia species, in particular 39 specimens of T. controversa, 92 of T. caries and 40 of T. laevis, respectively. The assay specifically amplified genomic DNA of T. controversa from pure cultures and teliospores. Only Tilletia trabutii generated false positive signals. The detection limit of the LAMP assay was 5 pg of genomic DNA per reaction. A test performance study that included five laboratories in Germany resulted in 100% sensitivity and 97.7% specificity of the assay. Genomic regions, specific to common bunt (Tilletia caries and Tilletia laevis together) are also provided.


Subject(s)
Basidiomycota/genetics , DNA, Fungal/genetics , Genome, Fungal , Molecular Diagnostic Techniques/standards , Nucleic Acid Amplification Techniques/standards , Base Sequence , Basidiomycota/classification , Basidiomycota/isolation & purification , DNA Primers/chemical synthesis , DNA Primers/metabolism , Limit of Detection , Plant Diseases/microbiology , Reproducibility of Results , Spores, Fungal/classification , Spores, Fungal/genetics , Spores, Fungal/isolation & purification , Triticum/microbiology
19.
Microbes Environ ; 36(2)2021.
Article in English | MEDLINE | ID: mdl-34135204

ABSTRACT

Chionaster nivalis is frequently detected in thawing snowpacks and glaciers. However, the taxonomic position of this species above the genus level remains unclear. We herein conducted molecular analyses of C. nivalis using the ribosomal RNA operon sequences obtained from more than 200 cells of this species isolated from a field-collected material. Our molecular phylogenetic analyses revealed that C. nivalis is a sister to Bartheletia paradoxa, which is an orphan basal lineage of Agaricomycotina. We also showed that C. nivalis sequences were contained in several previously examined meta-amplicon sequence datasets from snowpacks and glaciers in the Northern Hemisphere and Antarctica.


Subject(s)
Basidiomycota/classification , Basidiomycota/isolation & purification , Snow/microbiology , Antarctic Regions , Basidiomycota/genetics , Ice Cover/microbiology , Phylogeny
20.
Int J Food Microbiol ; 350: 109225, 2021 Jul 16.
Article in English | MEDLINE | ID: mdl-34023678

ABSTRACT

To address a knowledge gap about the grape berry mycobiome from Washington State vineyards, next-generation sequencing of the internal transcribed spacer region (ITS1) was used to identify native yeast and fungal species on berries of cultivar 'Cabernet Sauvignon' from two vineyards at veraison and harvest in 2015 and 2016. Four hundred fifty-six different yeast amplicon sequence variants (ASV), representing 184 distinct taxa, and 2467 non-yeast fungal ASV (791 distinct taxa) were identified in this study. A set of 50 recurrent yeast taxa, including Phaeococcomyces, Vishniacozyma and Metschnikowia, were found at both locations and sampling years. These yeast species were monitored from the vineyard into laboratory-scale spontaneous fermentations. Taxa assignable to Metschnikowia and Saccharomyces persisted during fermentation, whereas Curvibasidium, which also has possible impact on biocontrol and wine quality, did not. Sulfite generally reduced yeast diversity and richness, but its effect on the abundance of specific yeasts during fermentation was negligible. Among the 106 recurring non-yeast fungal taxa, Alternaria, Cladosporium and Ulocladium were especially abundant in the vineyard. Vineyard location was the primary factor that accounted for the variation among both communities, followed by year and berry developmental stage. The Washington mycobiomes were compared to those from other parts of the world. Sixteen recurrent yeast species appeared to be unique to Washington State vineyards. This subset also contained a higher proportion of species associated with cold and extreme environments, relative to other localities. Certain yeast and non-yeast fungal species known to suppress diseases or modify wine sensory properties were present in Washington vineyards, and likely have consequences to vineyard health and wine quality.


Subject(s)
Ascomycota/classification , Basidiomycota/classification , Fruit/microbiology , Mycobiome/genetics , Vitis/microbiology , Wine/microbiology , Ascomycota/genetics , Ascomycota/isolation & purification , Basidiomycota/genetics , Basidiomycota/isolation & purification , DNA, Intergenic/genetics , Farms , Fermentation , High-Throughput Nucleotide Sequencing , Washington , Yeast, Dried , Yeasts/classification , Yeasts/genetics , Yeasts/isolation & purification
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