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1.
Sci Rep ; 14(1): 10651, 2024 05 09.
Article in English | MEDLINE | ID: mdl-38724545

ABSTRACT

Herpesviruses are large double-stranded DNA viruses that cause infections in animals and humans with a characteristic of latent infectious within specific tissues. Bats are natural hosts of variety human-infecting viruses and recently have been described as hosts for herpesviruses in several countries around the world. In this study we collected 140 insectivorous bats in the neighboring urban areas of Wuhan City, Hubei Province in the central China between 2020 and 2021. Nested PCR targeting the dpol gene sequence indicated that a total of 22 individuals (15.7% of the sample) tested positive for herpesvirus with 4 strains belonging to the genus Betaherpesvirus and the remaining 18 strains classified as Gammahersvirus. Furthermore, the herpesvirus prevalence in Rhinolophus pusillus was higher at 26.3%, compared to 8.4% in Myotis davidii. The RP701 strain from R. pusillus was the predominant gammaherpesvirus strain detected in bats, accounting for 94.4% (17/18) of all strains. The variations in γ-herpesviruses genomic sequences was evident in phylogenetic tree, where RP701 strain was clustered together with ruminant γ-herpesviruses, while MD704 strain formed a distinct clade with a hedgehog γ-herpesvirus. Four betaherpesviruses exclusively identified from M. davidii, with nucleotide identities ranging from 79.7 to 82.6% compared to known betaherpesviruses. Our study provided evidence that M. davidii can sever as natural host for ß-herpesviruses, which extended the host species range. In conclusion, we found that bats from central China harbored novel ß-herpesviruses and γ-herpesviruses which were phylogenetically related to ruminant γ-herpesvirus and hedgehog γ-herpesvirus. Our study indicates that bats are natural hosts of ß- and γ-herpesviruses and further studies are needed to determine whether there is cross-species transmission of herpesviruses between bats and other animals, or humans.


Subject(s)
Betaherpesvirinae , Chiroptera , Gammaherpesvirinae , Herpesviridae Infections , Phylogeny , Animals , Chiroptera/virology , China/epidemiology , Gammaherpesvirinae/genetics , Gammaherpesvirinae/isolation & purification , Gammaherpesvirinae/classification , Betaherpesvirinae/genetics , Betaherpesvirinae/isolation & purification , Betaherpesvirinae/classification , Herpesviridae Infections/veterinary , Herpesviridae Infections/virology , Herpesviridae Infections/epidemiology , Genome, Viral , DNA, Viral/genetics
2.
Proc Natl Acad Sci U S A ; 119(4)2022 01 25.
Article in English | MEDLINE | ID: mdl-35046024

ABSTRACT

Transmissible vaccines have the potential to revolutionize how zoonotic pathogens are controlled within wildlife reservoirs. A key challenge that must be overcome is identifying viral vectors that can rapidly spread immunity through a reservoir population. Because they are broadly distributed taxonomically, species specific, and stable to genetic manipulation, betaherpesviruses are leading candidates for use as transmissible vaccine vectors. Here we evaluate the likely effectiveness of betaherpesvirus-vectored transmissible vaccines by developing and parameterizing a mathematical model using data from captive and free-living mouse populations infected with murine cytomegalovirus (MCMV). Simulations of our parameterized model demonstrate rapid and effective control for a range of pathogens, with pathogen elimination frequently occurring within a year of vaccine introduction. Our results also suggest, however, that the effectiveness of transmissible vaccines may vary across reservoir populations and with respect to the specific vector strain used to construct the vaccine.


Subject(s)
Betaherpesvirinae/genetics , Genetic Vectors/genetics , Immunogenicity, Vaccine , Models, Theoretical , Nucleic Acid-Based Vaccines/immunology , Vaccines/immunology , Algorithms , Animal Diseases/prevention & control , Animal Diseases/transmission , Animal Diseases/virology , Animals , Bayes Theorem , Disease Reservoirs , Disease Vectors , Genetic Vectors/immunology , Herpesviridae Infections/veterinary , Mice , Muromegalovirus , Nucleic Acid-Based Vaccines/genetics , Prevalence , Vaccines/genetics
3.
Viruses ; 13(9)2021 09 17.
Article in English | MEDLINE | ID: mdl-34578438

ABSTRACT

An evolutionary arms race occurs between viruses and hosts. Hosts have developed an array of antiviral mechanisms aimed at inhibiting replication and spread of viruses, reducing their fitness, and ultimately minimising pathogenic effects. In turn, viruses have evolved sophisticated counter-measures that mediate evasion of host defence mechanisms. A key aspect of host defences is the ability to differentiate between self and non-self. Previous studies have demonstrated significant suppression of CpG and UpA dinucleotide frequencies in the coding regions of RNA and small DNA viruses. Artificially increasing these dinucleotide frequencies results in a substantial attenuation of virus replication, suggesting dinucleotide bias could facilitate recognition of non-self RNA. The interferon-inducible gene, zinc finger antiviral protein (ZAP) is the host factor responsible for sensing CpG dinucleotides in viral RNA and restricting RNA viruses through direct binding and degradation of the target RNA. Herpesviruses are large DNA viruses that comprise three subfamilies, alpha, beta and gamma, which display divergent CpG dinucleotide patterns within their genomes. ZAP has recently been shown to act as a host restriction factor against human cytomegalovirus (HCMV), a beta-herpesvirus, which in turn evades ZAP detection by suppressing CpG levels in the major immediate-early transcript IE1, one of the first genes expressed by the virus. While suppression of CpG dinucleotides allows evasion of ZAP targeting, synonymous changes in nucleotide composition that cause genome biases, such as low GC content, can cause inefficient gene expression, especially in unspliced transcripts. To maintain compact genomes, the majority of herpesvirus transcripts are unspliced. Here we discuss how the conflicting pressures of ZAP evasion, the need to maintain compact genomes through the use of unspliced transcripts and maintaining efficient gene expression may have shaped the evolution of herpesvirus genomes, leading to characteristic CpG dinucleotide patterns.


Subject(s)
Alphaherpesvirinae/genetics , Dinucleoside Phosphates/metabolism , Genome, Viral , Herpesviridae/genetics , RNA-Binding Proteins/metabolism , Alphaherpesvirinae/metabolism , Alphaherpesvirinae/physiology , Animals , Betaherpesvirinae/genetics , Betaherpesvirinae/metabolism , Betaherpesvirinae/physiology , Evolution, Molecular , Gammaherpesvirinae/genetics , Gammaherpesvirinae/metabolism , Gammaherpesvirinae/physiology , Gene Expression , Herpesviridae/metabolism , Herpesviridae/physiology , Host-Pathogen Interactions , Humans , Interferons/metabolism , RNA Splicing , RNA, Viral/genetics , RNA, Viral/metabolism , RNA-Binding Proteins/chemistry , Signal Transduction , Viral Proteins/metabolism
4.
Mol Cell ; 81(13): 2823-2837.e9, 2021 07 01.
Article in English | MEDLINE | ID: mdl-34015248

ABSTRACT

DNA-induced liquid-liquid phase separation of cyclic GMP-AMP synthase (cGAS) triggers a potent response to detect pathogen infection and promote innate immune signaling. Whether and how pathogens manipulate cGAS-DNA condensation to mediate immune evasion is unknown. We report the identification of a structurally related viral tegument protein family, represented by ORF52 and VP22 from gamma- and alpha-herpesvirinae, respectively, that employs a conserved mechanism to restrict cGAS-DNA phase separation. ORF52/VP22 proteins accumulate into, and effectively disrupt, the pre-formed cGAS-DNA condensation both in vitro and in cells. The inhibition process is dependent on DNA-induced liquid-liquid phase separation of the viral protein rather than a direct interaction with cGAS. Moreover, highly abundant ORF52 proteins carried within viral particles are able to target cGAS-DNA phase separation in early infection stage. Our results define ORF52/VP22-type tegument proteins as a family of inhibitors targeting cGAS-DNA phase separation and demonstrate a mechanism for how viruses overcome innate immunity.


Subject(s)
Alphaherpesvirinae , Betaherpesvirinae , DNA , Herpesviridae Infections , Immune Evasion , Nucleotidyltransferases , Viral Structural Proteins , Alphaherpesvirinae/chemistry , Alphaherpesvirinae/genetics , Alphaherpesvirinae/immunology , Betaherpesvirinae/chemistry , Betaherpesvirinae/genetics , Betaherpesvirinae/immunology , DNA/chemistry , DNA/genetics , DNA/immunology , HEK293 Cells , HeLa Cells , Herpesviridae Infections/genetics , Herpesviridae Infections/immunology , Humans , Immunity, Innate , Nucleotidyltransferases/chemistry , Nucleotidyltransferases/genetics , Nucleotidyltransferases/immunology , Viral Structural Proteins/chemistry , Viral Structural Proteins/genetics , Viral Structural Proteins/immunology
5.
Nat Commun ; 11(1): 5951, 2020 11 23.
Article in English | MEDLINE | ID: mdl-33230120

ABSTRACT

Rabies is a viral zoonosis transmitted by vampire bats across Latin America. Substantial public health and agricultural burdens remain, despite decades of bats culls and livestock vaccinations. Virally vectored vaccines that spread autonomously through bat populations are a theoretically appealing solution to managing rabies in its reservoir host. We investigate the biological and epidemiological suitability of a vampire bat betaherpesvirus (DrBHV) to act as a vaccine vector. In 25 sites across Peru with serological and/or molecular evidence of rabies circulation, DrBHV infects 80-100% of bats, suggesting potential for high population-level vaccine coverage. Phylogenetic analysis reveals host specificity within neotropical bats, limiting risks to non-target species. Finally, deep sequencing illustrates DrBHV super-infections in individual bats, implying that DrBHV-vectored vaccines might invade despite the highly prevalent wild-type virus. These results indicate DrBHV as a promising candidate vector for a transmissible rabies vaccine, and provide a framework to discover and evaluate candidate viral vectors for vaccines against bat-borne zoonoses.


Subject(s)
Betaherpesvirinae/physiology , Chiroptera/virology , Rabies/epidemiology , Rabies/veterinary , Animals , Betaherpesvirinae/classification , Betaherpesvirinae/genetics , Biological Coevolution , Cattle , Chiroptera/classification , Genome, Viral/genetics , Herpesviridae Infections/epidemiology , Herpesviridae Infections/veterinary , Herpesviridae Infections/virology , Host Specificity , Mammals/classification , Mammals/virology , Peru/epidemiology , Phylogeny , Rabies/prevention & control , Rabies/transmission , Rabies virus/immunology , Rabies virus/physiology , Seroepidemiologic Studies , Superinfection/veterinary , Superinfection/virology
6.
Virology ; 548: 236-249, 2020 09.
Article in English | MEDLINE | ID: mdl-32791352

ABSTRACT

Species-specific guinea pig cytomegalovirus (GPCMV) causes congenital CMV and the virus encodes homolog glycoprotein complexes to human CMV, including gH-based trimer (gH/gL/gO) and pentamer-complex (PC). Platelet-derived growth factor receptor alpha (gpPDGFRA), only present on fibroblast cells, was identified via CRISPR as the putative receptor for PC-independent GPCMV infection. Immunoprecipitation assays demonstrated direct interaction of gH/gL/gO with gpPDGFRA but not in absence of gO. Expression of viral gB also resulted in precipitation of gB/gH/gL/gO/gpPDGFRA complex. Cell-cell fusion assays determined that expression of gpPDGFRA and gH/gL/gO in adjacent cells enabled cell fusion, which was not enhanced by gB. N-linked gpPDGFRA glycosylation inhibition had limited effect and blocking tyrosine kinase (TK) transduction had no impact on infection. Ectopically expressed gpPDGFRA or TK-domain mutant in trophoblast or epithelial cells previously non-susceptible to GPCMV(PC-) enabled viral infection. In contrast, transient human PDGFRA expression did not complement GPCMV(PC-) infection, a potential basis for viral species specificity.


Subject(s)
Betaherpesvirinae/physiology , Herpesviridae Infections/veterinary , Receptor, Platelet-Derived Growth Factor alpha/metabolism , Rodent Diseases/metabolism , Viral Proteins/metabolism , Animals , Betaherpesvirinae/genetics , Cell Fusion , Guinea Pigs , Herpesviridae Infections/genetics , Herpesviridae Infections/metabolism , Protein Binding , Receptor, Platelet-Derived Growth Factor alpha/genetics , Rodent Diseases/genetics , Rodent Diseases/virology , Viral Proteins/chemistry , Viral Proteins/genetics , Virus Internalization
7.
Emerg Infect Dis ; 26(1): 63-69, 2020 01.
Article in English | MEDLINE | ID: mdl-31855135

ABSTRACT

In recent years, an alarming number of cases of lethal acute hemorrhagic disease have occurred in Asian elephant calves raised in logging camps in Myanmar. To determine whether these deaths were associated with infection by elephant endotheliotropic herpesvirus (EEHV), we conducted diagnostic PCR subtype DNA sequencing analysis on necropsy tissue samples collected from 3 locations. We found that EEHV DNA from 7 PCR loci was present at high levels in all 3 calves and was the same EEHV1A virus type that has been described in North America, Europe, and other parts of Asia. However, when analyzed over 5,610 bp, the strains showed major differences from each other and from all previously characterized EEHV1A strains. We conclude that these 3 elephant calves in Myanmar died from the same herpesvirus disease that has afflicted young Asian elephants in other countries over the past 20 years.


Subject(s)
Betaherpesvirinae , Elephants/virology , Herpesviridae Infections/veterinary , Animals , Animals, Newborn/virology , Betaherpesvirinae/genetics , Female , Herpesviridae Infections/epidemiology , Herpesviridae Infections/pathology , Herpesviridae Infections/virology , Male , Myanmar/epidemiology , Phylogeny , Polymerase Chain Reaction/veterinary , Sequence Analysis, DNA
8.
BMC Infect Dis ; 19(1): 773, 2019 Sep 04.
Article in English | MEDLINE | ID: mdl-31484497

ABSTRACT

BACKGROUND: The etiology of acute liver failure (ALF) is often unknown and reported to be associated with herpesviruses in a number of cases. In this study, we examined for betaherpesviruses infections in patients with ALF of unknown etiology using a multiplex qPCR to Betaherpesviruses subfamily. METHODS: Liver explant and serum samples from 27 patients with ALF of unknown etiology were analyzed with the aid of multiplex qPCR to identify betaherpesviruses. All positive samples were sequenced to confirm herpes infection and liver enzyme levels evaluated. RESULTS: Betaherpesviruses infection was effectively detected using multiplex qPCR. Six (22%) HHV-6, one (3%) HCMV and two (7%) dual infections (one with HHV-7/HHV-6, and the other with HHV-7/ HCMV). Interestingly, HHV-7 was only detected in the presence of other betaherpesviruses. Sequencing information confirmed betaherpesviruses infection. High hepatic enzyme levels and INR values> 1.5 were determined in all betaherpesvirus-positive patients. CONCLUSIONS: Multiplex qPCR facilitated efficient quantification, indicating that differentiation between betaherpesviruses is possible with the sole use of real-time PCR. Liver explant and serum samples were positive for some betaherpesviruses, and coinfection of HHV-7 with HHV-6 and HCMV was additionally detected. Based on these results, we propose that ALF patients should be screened for the presence of betaherpesviruses.


Subject(s)
Betaherpesvirinae/genetics , Betaherpesvirinae/isolation & purification , Herpesviridae Infections/diagnosis , Liver Failure, Acute/diagnosis , Real-Time Polymerase Chain Reaction , Adolescent , Adult , Brazil/epidemiology , Child , DNA, Viral/blood , DNA, Viral/isolation & purification , Diagnosis, Differential , Female , Herpesviridae Infections/epidemiology , Herpesviridae Infections/virology , Humans , Incidence , Liver Failure, Acute/epidemiology , Liver Failure, Acute/virology , Male , Middle Aged , Real-Time Polymerase Chain Reaction/methods , Young Adult
9.
Adv Exp Med Biol ; 1045: 167-207, 2018.
Article in English | MEDLINE | ID: mdl-29896668

ABSTRACT

Virions are the vehicle for cell-to-cell and host-to-host transmission of viruses. Virions need to be assembled reliably and efficiently, be released from infected cells, survive in the extracellular environment during transmission, recognize and then trigger entry of appropriate target cells, and disassemble in an orderly manner during initiation of a new infection. The betaherpesvirus subfamily includes four human herpesviruses (human cytomegalovirus and human herpesviruses 6A, 6B, and 7), as well as viruses that are the basis of important animal models of infection and immunity. Similar to other herpesviruses, betaherpesvirus virions consist of four main parts (in order from the inside): the genome, capsid, tegument, and envelope. Betaherpesvirus genomes are dsDNA and range in length from ~145 to 240 kb. Virion capsids (or nucleocapsids) are geometrically well-defined vessels that contain one copy of the dsDNA viral genome. The tegument is a collection of several thousand protein and RNA molecules packed into the space between the envelope and the capsid for delivery and immediate activity upon cellular entry at the initiation of an infection. Betaherpesvirus envelopes consist of lipid bilayers studded with virus-encoded glycoproteins; they protect the virion during transmission and mediate virion entry during initiation of new infections. Here, we summarize the mechanisms of betaherpesvirus virion assembly, including how infection modifies, reprograms, hijacks, and otherwise manipulates cellular processes and pathways to produce virion components, assemble the parts into infectious virions, and then transport the nascent virions to the extracellular environment for transmission.


Subject(s)
Betaherpesvirinae/physiology , Herpesviridae Infections/virology , Virion/physiology , Virus Assembly , Virus Release , Animals , Betaherpesvirinae/genetics , Humans , Virion/genetics
10.
Adv Exp Med Biol ; 1045: 227-249, 2018.
Article in English | MEDLINE | ID: mdl-29896670

ABSTRACT

Betaherpesvirus possesses a large genome DNA with a lot of open reading frames, indicating abundance in the variety of viral protein factors. Because the complicated pathogenicity of herpesvirus reflects the combined functions of these factors, analyses of individual proteins are the fundamental steps to comprehensively understand about the viral life cycle and the pathogenicity. In this chapter, structural aspects of the betaherpesvirus-encoded proteins are introduced. Betaherpesvirus-encoded proteins of which structural information is available were summarized and subcategorized into capsid proteins, tegument proteins, nuclear egress complex proteins, envelope glycoproteins, enzymes, and immune-modulating factors. Structure of capsid proteins are analyzed in capsid by electron cryomicroscopy at quasi-atomic resolution. Structural information of teguments is limited, but a recent crystallographic analysis of an essential tegument protein of human herpesvirus 6B is introduced. As for the envelope glycoproteins, crystallographic analysis of glycoprotein gB has been done, revealing the fine-tuned structure and the distribution of its antigenic domains. gH/gL structure of betaherpesvirus is not available yet, but the overall shape and the spatial arrangement of the accessory proteins are analyzed by electron microscopy. Nuclear egress complex was analyzed from the structural perspective in 2015, with the structural analysis of cytomegalovirus UL50/UL53. The category "enzymes" includes the viral protease, DNA polymerase and terminase for which crystallographic analyses have been done. The immune-modulating factors are viral ligands or receptors for immune regulating factors of host immune cells, and their communications with host immune molecules are demonstrated in the aspect of molecular structure.


Subject(s)
Betaherpesvirinae/metabolism , Herpesviridae Infections/virology , Viral Structural Proteins/chemistry , Viral Structural Proteins/metabolism , Animals , Betaherpesvirinae/chemistry , Betaherpesvirinae/genetics , Cell Nucleus/virology , Humans , Viral Structural Proteins/genetics , Virus Release
11.
Adv Exp Med Biol ; 1045: 251-270, 2018.
Article in English | MEDLINE | ID: mdl-29896671

ABSTRACT

Two of the four betaherpesviruses, Cytomegalovirus (CMV) and human herpesvirus 6B (HHV-6B), play an important role in opportunistic infections in hematopoietic stem cell transplant (HSCT) recipients. These viruses are ubiquitous in humans and can latently infect mononuclear lymphocytes, complicating the diagnosis of the diseases they cause. Although the detection of viral DNA in a patient's peripheral blood by real-time PCR is widely used for monitoring viral infection, it is insufficient for the diagnosis of virus-associated disease. Theoretically, end-organ disease should be confirmed by detecting either viral antigen or significant amounts of viral DNA in a tissue sample obtained from the involved organ; however, this is often difficult to perform in clinical practice. The frequency of CMV-associated diseases has decreased gradually as a result of the introduction of preemptive or prophylactic treatments; however, CMV and HHV-6B infections remain a major problem in HSCT recipients. Measurement of viral DNA load in peripheral blood or plasma using real-time PCR is commonly used for monitoring these infections. Additionally, recent data suggest that an assessment of host immune response, particularly cytotoxic T-cell response, may be a reliable tool for predicting these viral infections. The antiviral drugs ganciclovir and foscarnet are used as first-line treatments; however, it is well known that these drugs have side effects, such as bone marrow suppression and nephrotoxicity. Further research is required to develop less-toxic antiviral drugs.


Subject(s)
Betaherpesvirinae/metabolism , Hematopoietic Stem Cell Transplantation/adverse effects , Herpesviridae Infections/virology , Intraoperative Complications/virology , Animals , Antiviral Agents/administration & dosage , Betaherpesvirinae/drug effects , Betaherpesvirinae/genetics , Herpesviridae Infections/drug therapy , Humans , Intraoperative Complications/drug therapy
12.
Arch Virol ; 162(2): 449-456, 2017 Feb.
Article in English | MEDLINE | ID: mdl-27778101

ABSTRACT

Herpesviruses (HVs) have a wide range of hosts in the animal kingdom. The result of infection with HVs can vary from asymptomatic to fatal diseases depending on subtype, strain, and host. To date, little is known about HVs naturally circulating in wildlife species and the impact of these viruses on other species. In our study, we used genetic and comparative approaches to increase our understanding of circulating HVs in Canadian wildlife. Using nested polymerase chain reaction targeting a conserved region of the HV DNA polymerase gene, we analyzed material derived from wildlife of western and northern Canada collected between February 2009 and Sept 2014. For classification of new virus sequences, we compared our viral sequences with published sequences in GenBank to identify conserved residues and motifs that are unique to each subfamily, alongside phylogenetic analysis. All alphaherpesviruses shared a conserved tryptophan (W856) and tyrosine (Y880), betaherpesviruses all shared a serine (S836), and gammaherpesviruses had a conserved glutamic acid (E835). Most of our wildlife HV sequences grouped together with HVs from taxonomically related host species. From Martes americana, we detected previously uncharacterized alpha- and beta-herpesviruses.


Subject(s)
Alphaherpesvirinae/genetics , Animals, Wild/virology , Betaherpesvirinae/genetics , DNA-Directed DNA Polymerase/genetics , Gammaherpesvirinae/genetics , Viral Proteins/genetics , Alphaherpesvirinae/classification , Alphaherpesvirinae/isolation & purification , Amino Acid Sequence , Animals , Base Sequence , Betaherpesvirinae/classification , Betaherpesvirinae/isolation & purification , Canada , Conserved Sequence , DNA-Directed DNA Polymerase/metabolism , Gammaherpesvirinae/classification , Gammaherpesvirinae/isolation & purification , Gene Expression , Phylogeny , Phylogeography , Sequence Alignment , Viral Proteins/metabolism
13.
PLoS One ; 11(12): e0169153, 2016.
Article in English | MEDLINE | ID: mdl-28036408

ABSTRACT

A thorough search for bat herpesviruses was carried out in oropharyngeal samples taken from most of the bat species present in the Iberian Peninsula from the Vespertilionidae, Miniopteridae, Molossidae and Rhinolophidae families, in addition to a colony of captive fruit bats from the Pteropodidae family. By using two degenerate consensus PCR methods targeting two conserved genes, distinct and previously unrecognized bat-hosted herpesviruses were identified for the most of the tested species. All together a total of 42 potentially novel bat herpesviruses were partially characterized. Thirty-two of them were tentatively assigned to the Betaherpesvirinae subfamily while the remaining 10 were allocated into the Gammaherpesvirinae subfamily. Significant diversity was observed among the novel sequences when compared with type herpesvirus species of the ICTV-approved genera. The inferred phylogenetic relationships showed that most of the betaherpesviruses sequences fell into a well-supported unique monophyletic clade and support the recognition of a new betaherpesvirus genus. This clade is subdivided into three major clades, corresponding to the families of bats studied. This supports the hypothesis of a species-specific parallel evolution process between the potentially new betaherpesviruses and their bat hosts. Interestingly, two of the betaherpesviruses' sequences detected in rhinolophid bats clustered together apart from the rest, closely related to viruses that belong to the Roseolovirus genus. This suggests a putative third roseolo lineage. On the contrary, no phylogenetic structure was detected among several potentially novel bat-hosted gammaherpesviruses found in the study. Remarkably, all of the possible novel bat herpesviruses described in this study are linked to a unique bat species.


Subject(s)
Betaherpesvirinae/growth & development , Betaherpesvirinae/genetics , Chiroptera/virology , DNA, Viral/genetics , Gammaherpesvirinae/classification , Gammaherpesvirinae/genetics , Animals , Base Sequence , Betaherpesvirinae/classification , Betaherpesvirinae/isolation & purification , Biological Evolution , Gammaherpesvirinae/isolation & purification , Genetic Variation/genetics , Phylogeny , Polymerase Chain Reaction , Portugal , Roseolovirus/classification , Roseolovirus/genetics , Sequence Alignment , Sequence Analysis, DNA , Spain
14.
J Virol ; 88(23): 13523-46, 2014 Dec.
Article in English | MEDLINE | ID: mdl-25231303

ABSTRACT

UNLABELLED: A family of novel endotheliotropic herpesviruses (EEHVs) assigned to the genus Proboscivirus have been identified as the cause of fatal hemorrhagic disease in 70 young Asian elephants worldwide. Although EEHV cannot be grown in cell culture, we have determined a total of 378 kb of viral genomic DNA sequence directly from clinical tissue samples from six lethal cases and two survivors. Overall, the data obtained encompass 57 genes, including orthologues of 32 core genes common to all herpesviruses, 14 genes found in some other herpesviruses, plus 10 novel genes, including a single large putative transcriptional regulatory protein (ORF-L). On the basis of differences in gene content and organization plus phylogenetic analyses of conserved core proteins that have just 20% to 50% or less identity to orthologues in other herpesviruses, we propose that EEHV1A, EEHV1B, and EEHV2 could be considered a new Deltaherpesvirinae subfamily of mammalian herpesviruses that evolved as an intermediate branch between the Betaherpesvirinae and Gammaherpesvirinae. Unlike cytomegaloviruses, EEHV genomes encode ribonucleotide kinase B subunit (RRB), thymidine kinase (TK), and UL9-like origin binding protein (OBP) proteins and have an alphaherpesvirus-like dyad symmetry Ori-Lyt domain. They also differ from all known betaherpesviruses by having a 40-kb large-scale inversion of core gene blocks I, II, and III. EEHV1 and EEHV2 DNA differ uniformly by more than 25%, but EEHV1 clusters into two major subgroups designated EEHV1A and EEHV1B with ancient partially chimeric features. Whereas large segments are nearly identical, three nonadjacent loci totaling 15 kb diverge by between 21 and 37%. One strain of EEHV1B analyzed is interpreted to be a modern partial recombinant with EEHV1A. IMPORTANCE: Asian elephants are an endangered species whose survival is under extreme pressure in wild range countries and whose captive breeding populations in zoos are not self-sustaining. In 1999, a novel class of herpesviruses called EEHVs was discovered. These viruses have caused a rapidly lethal hemorrhagic disease in 20% of all captive Asian elephant calves born in zoos in the United States and Europe since 1980. The disease is increasingly being recognized in Asian range countries as well. These viruses cannot be grown in cell culture, but by direct PCR DNA sequence analysis from segments totaling 15 to 30% of the genomes from blood or necropsy tissue from eight different cases, we have determined that they fall into multiple types and chimeric subtypes of a novel Proboscivirus genus, and we propose that they should also be classified as the first examples of a new mammalian herpesvirus subfamily named the Deltaherpesvirinae.


Subject(s)
Betaherpesvirinae/classification , Betaherpesvirinae/isolation & purification , Genetic Variation , Herpesviridae Infections/veterinary , Animals , Betaherpesvirinae/genetics , Cluster Analysis , DNA, Viral/chemistry , DNA, Viral/genetics , Elephants , Herpesviridae Infections/virology , Molecular Sequence Data , Open Reading Frames , Phylogeny , Sequence Analysis, DNA , Sequence Homology, Amino Acid , Viral Proteins/genetics
15.
J Virol ; 88(23): 13547-69, 2014 Dec.
Article in English | MEDLINE | ID: mdl-25231309

ABSTRACT

UNLABELLED: The genomes of three types of novel endotheliotropic herpesviruses (elephant endotheliotropic herpesvirus 1A [EEHV1A], EEHV1B, and EEHV2) associated with lethal hemorrhagic disease in Asian elephants have been previously well characterized and assigned to a new Proboscivirus genus. Here we have generated 112 kb of DNA sequence data from segments of four more types of EEHV by direct targeted PCR from blood samples or necropsy tissue samples from six viremic elephants. Comparative phylogenetic analysis of nearly 30 protein-encoding genes of EEHV5 and EEHV6 show that they diverge uniformly by nearly 20% from their closest relatives, EEHV2 and EEHV1A, respectively, and are likely to have similar overall gene content and genome organization. In contrast, seven EEHV3 and EEHV4 genes analyzed differ from those of all other EEHVs by 37% and have a G+C content of 63% compared to just 42% for the others. Three strains of EEHV5 analyzed clustered into two partially chimeric subgroups EEHV5A and EEHV5B that diverge by 19% within three small noncontiguous segments totaling 6.2 kb. We conclude that all six EEHV types should be designated as independent species within a proposed new fourth Deltaherpesvirinae subfamily of mammalian herpesviruses. These virus types likely initially diverged close to 100 million years ago when the ancestors of modern elephants split from all other placental mammals and then evolved into two major branches with high- or low-G+C content about 35 million years ago. Later additional branching events subsequently generated three paired sister taxon lineages of which EEHV1 plus EEHV6, EEHV5 plus EEHV2, and EEHV4 plus EEHV3 may represent Asian and African elephant versions, respectively. IMPORTANCE: One of the factors threatening the long-term survival of endangered Asian elephants in both wild range countries and in captive breeding populations in zoos is a highly lethal hemorrhagic herpesvirus disease that has killed at least 70 young Asian elephants worldwide. The genomes of the first three types of EEHVs (or probosciviruses) identified have been partially characterized in the preceding accompanying paper (L. K. Richman, J.-C. Zong, E. M. Latimer, J. Lock, R. C. Fleischer, S. Y. Heaggans, and G. S. Hayward, J. Virol. 88:13523-13546, 2014, http://dx.doi.org/10.1128/JVI.01673-14). Here we have used PCR DNA sequence analysis from multiple segments of DNA amplified directly from blood or necropsy tissue samples of six more selected cases of hemorrhagic disease to partially characterize four other types of EEHVs from either Asian or African elephants. We propose that all six types and two chimeric subtypes of EEHV belong to multiple lineages of both AT-rich and GC-rich branches within a new subfamily to be named the Deltaherpesvirinae, which evolved separately from all other mammalian herpesviruses about100 million years ago.


Subject(s)
Betaherpesvirinae/classification , Betaherpesvirinae/isolation & purification , Blood/virology , Genetic Variation , Herpesviridae Infections/veterinary , Animals , Base Composition , Betaherpesvirinae/genetics , Cluster Analysis , DNA, Viral/chemistry , DNA, Viral/genetics , Elephants , Herpesviridae Infections/virology , Molecular Sequence Data , Open Reading Frames , Phylogeny , Sequence Analysis, DNA , Sequence Homology, Amino Acid , Viral Proteins/genetics
16.
Virology ; 454-455: 102-8, 2014 Apr.
Article in English | MEDLINE | ID: mdl-24725936

ABSTRACT

Elephant endotheliotropic herpesvirus 1 (EEHV1), a member of the Betaherpesvirinae subfamily, has recently emerged as an important viral pathogen of Asian elephants that can cause a severe, often fatal, hemorrhagic disease. EEHV1 does not replicate in culture and little is currently known about the molecular biology of this emerging pathogen, with the notable exception of its genomic DNA sequence. Here, we have used small RNA deep sequencing to determine whether EEHV1, like other human and murine betaherpesviruses, expresses viral microRNAs in infected tissues in vivo. Our data provide evidence supporting the existence of at least three novel viral microRNAs encoded by EEHV1 and one of these, miR-E3-5p, is shown to repress target mRNA expression. Moreover, miR-E3-5p expression was readily detectable in tissue samples derived from two infected elephants, including in whole blood. These data shed new light on the biology of EEHV1 and identify small RNAs that have the potential to be useful in the diagnosis of sub-clinical infections in captive Asian and African elephants.


Subject(s)
Betaherpesvirinae/genetics , Gene Expression , Herpesviridae Infections/veterinary , MicroRNAs/biosynthesis , RNA, Viral/biosynthesis , Animals , Betaherpesvirinae/isolation & purification , Elephants , Gene Expression Profiling , Herpesviridae Infections/virology , High-Throughput Nucleotide Sequencing , MicroRNAs/genetics , RNA, Viral/genetics
17.
J Virol ; 87(12): 6700-12, 2013 Jun.
Article in English | MEDLINE | ID: mdl-23552421

ABSTRACT

A highly lethal hemorrhagic disease associated with infection by elephant endotheliotropic herpesvirus (EEHV) poses a severe threat to Asian elephant husbandry. We have used high-throughput methods to sequence the genomes of the two genotypes that are involved in most fatalities, namely, EEHV1A and EEHV1B (species Elephantid herpesvirus 1, genus Proboscivirus, subfamily Betaherpesvirinae, family Herpesviridae). The sequences were determined from postmortem tissue samples, despite the data containing tiny proportions of viral reads among reads from a host for which the genome sequence was not available. The EEHV1A genome is 180,421 bp in size and consists of a unique sequence (174,601 bp) flanked by a terminal direct repeat (2,910 bp). The genome contains 116 predicted protein-coding genes, of which six are fragmented, and seven paralogous gene families are present. The EEHV1B genome is very similar to that of EEHV1A in structure, size, and gene layout. Half of the EEHV1A genes lack orthologs in other members of subfamily Betaherpesvirinae, such as human cytomegalovirus (genus Cytomegalovirus) and human herpesvirus 6A (genus Roseolovirus). Notable among these are 23 genes encoding type 3 membrane proteins containing seven transmembrane domains (the 7TM family) and seven genes encoding related type 2 membrane proteins (the EE50 family). The EE50 family appears to be under intense evolutionary selection, as it is highly diverged between the two genotypes, exhibits evidence of sequence duplications or deletions, and contains several fragmented genes. The availability of the genome sequences will facilitate future research on the epidemiology, pathogenesis, diagnosis, and treatment of EEHV-associated disease.


Subject(s)
Betaherpesvirinae/genetics , Elephants/virology , Genome, Viral/genetics , Herpesviridae Infections/veterinary , Sequence Analysis, DNA , Animals , Autopsy , Base Sequence , Betaherpesvirinae/classification , Betaherpesvirinae/isolation & purification , DNA, Viral/analysis , DNA, Viral/genetics , DNA, Viral/isolation & purification , Fatal Outcome , Female , Herpesviridae Infections/virology , High-Throughput Nucleotide Sequencing , Humans , Male , Molecular Sequence Data
18.
Virol J ; 10: 1, 2013 Jan 02.
Article in English | MEDLINE | ID: mdl-23279912

ABSTRACT

Herpesviridae is a large family of DNA viruses divided into three subfamilies: Alpha-, Beta- and Gammaherpesvirinae. The process of herpesvirus transmission is mediated by a range of proteins, one of which is glycoprotein L (gL). Based on our analysis of the solved structures of HSV2 and EBV gH/gL complexes, we propose that Alphaherpesvirinae and Gammaherpesvirinae glycoprotein L and Betaherpesvirinae UL130 originate from chemokines. Herpes simplex virus type 2 gL and human cytomegalovirus homolog (UL130) adopt a novel C chemokine-like fold, while Epstein-Barr virus gL mimics a CC chemokine structure. Hence, it is possible that gL interface with specific chemokine receptors during the transmission of Herpesviridae. We conclude that the further understanding of the function of viral chemokine-like proteins in Herpesviridae infection may lead to development of novel prophylactic and therapeutic treatment.


Subject(s)
Alphaherpesvirinae/chemistry , Betaherpesvirinae/chemistry , Chemokines/chemistry , Gammaherpesvirinae/chemistry , Viral Envelope Proteins/chemistry , Alphaherpesvirinae/genetics , Amino Acid Sequence , Betaherpesvirinae/genetics , Chemokines/genetics , Evolution, Molecular , Gammaherpesvirinae/genetics , Models, Molecular , Molecular Sequence Data , Protein Conformation , Sequence Alignment , Viral Envelope Proteins/genetics
19.
PLoS One ; 7(7): e40585, 2012.
Article in English | MEDLINE | ID: mdl-22792376

ABSTRACT

Fluorescent tagging of viral particles by genetic means enables the study of virus dynamics in living cells. However, the study of beta-herpesvirus entry and morphogenesis by this method is currently limited. This is due to the lack of replication competent, capsid-tagged fluorescent viruses. Here, we report on viable recombinant MCMVs carrying ectopic insertions of the small capsid protein (SCP) fused to fluorescent proteins (FPs). The FPs were inserted into an internal position which allowed the production of viable, fluorescently labeled cytomegaloviruses, which replicated with wild type kinetics in cell culture. Fluorescent particles were readily detectable by several methods. Moreover, in a spread assay, labeled capsids accumulated around the nucleus of the newly infected cells without any detectable viral gene expression suggesting normal entry and particle trafficking. These recombinants were used to record particle dynamics by live-cell microscopy during MCMV egress with high spatial as well as temporal resolution. From the resulting tracks we obtained not only mean track velocities but also their mean square displacements and diffusion coefficients. With this key information, we were able to describe particle behavior at high detail and discriminate between particle tracks exhibiting directed movement and tracks in which particles exhibited free or anomalous diffusion.


Subject(s)
Betaherpesvirinae/metabolism , Capsid/metabolism , Amino Acid Sequence , Animals , Betaherpesvirinae/genetics , Betaherpesvirinae/ultrastructure , Biological Transport/drug effects , Capsid Proteins/genetics , Capsid Proteins/metabolism , Cell Line , Cytoplasm/metabolism , Gene Order , Green Fluorescent Proteins/genetics , Green Fluorescent Proteins/metabolism , Mice , Molecular Sequence Data , Muromegalovirus/metabolism , Nocodazole/pharmacology , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/metabolism , Sequence Alignment , Tubulin Modulators/pharmacology , Virion/metabolism , Virion/ultrastructure
20.
J Virol ; 85(4): 1804-19, 2011 Feb.
Article in English | MEDLINE | ID: mdl-21147923

ABSTRACT

UL69 of human cytomegalovirus (HCMV) encodes a pleiotropic transactivator protein and has a counterpart in every member of the Herpesviridae family thus far sequenced. However, little is known about the conservation of the functions of the nuclear phosphoprotein pUL69 in the homologous proteins of other betaherpesviruses. Therefore, eukaryotic expression vectors were constructed for pC69 of chimpanzee cytomegalovirus, pRh69 of rhesus cytomegalovirus, pM69 of murine cytomegalovirus, pU42 of human herpesvirus 6, and pU42 of elephant endotheliotropic herpesvirus. Indirect immunofluorescence experiments showed that all pUL69 homologs expressed by these vectors were localized to the cell nucleus. Coimmunoprecipitation experiments identified homodimerization as a conserved feature of all homologs, whereas heterodimerization with pUL69 was restricted to its closer relatives. Further analyses demonstrated that pC69 and pRh69 were the only two homologs that functioned, like pUL69, as viral-mRNA export factors. As we had reported recently that nucleocytoplasmic shuttling and interaction with the cellular DExD/H-box helicases UAP56 and URH49 were prerequisites for the nuclear-mRNA export activity of pUL69, the homologs were characterized with regard to these properties. Heterokaryon assays demonstrated nucleocytoplasmic shuttling for all homologs, and coimmunoprecipitation and mRNA export assays revealed that the interaction of UAP56 and/or URH49 with pC69 or pRh69 was required for mRNA export activity. Moreover, characterization of HCMV recombinants harboring mutations within the N-terminal sequence of pUL69 revealed a strong replication defect of viruses expressing pUL69 variants that were deficient in UAP56 binding. In summary, homodimerization and nucleocytoplasmic shuttling activity were identified as conserved features of betaherpesviral pUL69 homologs. UAP56 binding was shown to represent a unique characteristic of members of the genus Cytomegalovirus that is required for efficient replication of HCMV.


Subject(s)
Active Transport, Cell Nucleus , Betaherpesvirinae/physiology , DEAD-box RNA Helicases/metabolism , RNA, Messenger/metabolism , Trans-Activators/metabolism , Virus Replication , Animals , Betaherpesvirinae/genetics , Betaherpesvirinae/metabolism , Cell Nucleus/metabolism , Cytomegalovirus/genetics , Cytomegalovirus/metabolism , Cytomegalovirus/physiology , DEAD-box RNA Helicases/genetics , Dimerization , HEK293 Cells , HeLa Cells , Humans , Mice , Mutation , Nuclear Proteins/genetics , Nuclear Proteins/metabolism , Phosphoproteins/genetics , Phosphoproteins/metabolism , RNA, Viral/genetics , RNA, Viral/metabolism , Trans-Activators/chemistry , Trans-Activators/genetics
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