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1.
J Oleo Sci ; 71(1): 141-149, 2022 Jan 08.
Article in English | MEDLINE | ID: mdl-34880152

ABSTRACT

The MgAlO catalyst was obtained from thermal decomposition of the MgAl-LDH catalyst having Mg/Al molar ratio of 5. The catalytic Guerbet reaction of ethanol was investigated to determine the effect of WHSV and nitrogen flow rate on butanol production and product distribution. It was performed in a fixed-bed microreactor under continuous flow of vaporized ethanol mixed with N2. The MgAlO catalyst had high total basic sites and high total acid sites that were crucial for ethanol Guerbet reaction. The MgAlO catalyst showed the highest butanol selectivity at 300℃ under WHSV = 3.10 h-1 and nitrogen flow rate = 3,600 mL/h, and the highest butanol yield at 400℃ under WHSV = 3.10 h-1 and nitrogen flow rate = 900 mL/h. It can be summarized that in order to enhance the butanol yield, the low WHSV is preferred to increase the contact time of ethanol and catalyst under moderate temperature.


Subject(s)
Aluminum/chemistry , Butanols/chemical synthesis , Ethanol/chemistry , Hydroxides/chemistry , Magnesium/chemistry , Biofuels , Catalysis , Hot Temperature , Nitrogen/chemistry , Volatilization
2.
Methods Mol Biol ; 2290: 3-21, 2021.
Article in English | MEDLINE | ID: mdl-34009579

ABSTRACT

Renewable biobutanol production is receiving more attention toward substituting fossil-based nonrenewable fuels. Biobutanol is recognized as the top most biofuel with extraordinary properties as compared with gasoline. The demand for biobutanol production is increasing enormously due to application in various industries as chemical substituent. Biobutanol production technology has attracted many researchers toward implementation of replacing cost-effective substrate and easy method to recover from the fermentation broth. Sugarcane bagasse, algal biomass, crude glycerol, and lignocellulosic biomass are potential cost-effective substrates which could replace consistent glucose-based substrates. The advantages and limitations of these substrates have been discussed in this chapter. Moreover, finding the integrated biobutanol recovery methods is an important factor parameter in production of biobutanol. This chapter also concentrated on possibilities and drawbacks of obtainable integrated biobutanol recovery methods. Thus, successful process involving cost-effective substrate and biobutanol recovery methods could help to implementation of biobutanol production industry. Overall, this chapter has endeavored to increase the viability of industrial production of biobutanol.


Subject(s)
Biotechnology/methods , Butanols/metabolism , Biofuels , Biomass , Butanols/chemical synthesis , Butanols/chemistry , Cellulose , Fermentation , Glycerol/metabolism , Industrial Microbiology/methods , Lignin/metabolism , Microalgae/metabolism , Saccharum
3.
Nat Chem ; 12(4): 412-423, 2020 04.
Article in English | MEDLINE | ID: mdl-32203445

ABSTRACT

The Soai reaction has profoundly impacted chemists' perspective of autocatalysis, chiral symmetry breaking, absolute asymmetric synthesis and its role in the origin of biological homochirality. Here we describe the unprecedented observation of asymmetry-amplifying autocatalysis in the alkylation of 5-(trimethylsilylethynyl)pyridine-3-carbaldehyde using diisopropylzinc. Kinetic studies with a surrogate substrate and spectroscopic analysis of a series of zinc alkoxides that incorporate specific structural mutations reveal a 'pyridine-assisted cube escape'. The new tetrameric cluster functions as a catalyst that activates the substrate through a two-point binding mode and poises a coordinated diisopropylzinc moiety for alkyl group transfer. Transition-state models leading to both the homochiral and heterochiral products were validated by density functional theory calculations. Moreover, experimental and computational analysis of the heterochiral complex provides a definitive explanation for the nonlinear behaviour of this system. Our deconstruction of the Soai system reveals the structural logic for autocatalyst evolution, function and substrate compatibility-a central mechanistic aspect of this iconic transformation.


Subject(s)
Aldehydes/chemistry , Butanols/chemical synthesis , Pyridines/chemical synthesis , Catalysis , Density Functional Theory , Kinetics , Models, Chemical , Organometallic Compounds/chemistry , Stereoisomerism , Zinc/chemistry
4.
Microb Cell Fact ; 17(1): 154, 2018 Sep 27.
Article in English | MEDLINE | ID: mdl-30261894

ABSTRACT

BACKGROUND: Coffee silverskin, a by-product from coffee roasting industries, was evaluated as a feedstock for biobutanol production by acetone-butanol-ethanol fermentation. This lignocellulosic biomass contained approximately 30% total carbohydrates and 30% lignin. Coffee silverskin was subjected to autohydrolysis at 170 °C during 20 min, with a biomass-to-solvent ratio of 20%, and a subsequent enzymatic hydrolysis with commercial enzymes in order to release simple sugars. The fermentability of the hydrolysate was assessed with four solventogenic strains from the genus Clostridium. In addition, fermentation conditions were optimised via response surface methodology to improve butanol concentration in the final broth. RESULTS: The coffee silverskin hydrolysate contained 34.39 ± 2.61 g/L total sugars, which represents a sugar recovery of 34 ± 3%. It was verified that this hydrolysate was fermentable without the need of any detoxification method and that C. beijerinckii CECT 508 was the most efficient strain for butanol production, attaining final values of 4.14 ± 0.21 g/L acetone, 7.02 ± 0.27 g/L butanol and 0.25 ± 0.01 g/L ethanol, consuming 76.5 ± 0.8% sugars and reaching a butanol yield of 0.269 ± 0.008 gB/gS under optimal conditions. CONCLUSIONS: Coffee silverskin could be an adequate feedstock for butanol production in biorefineries. When working with complex matrices like lignocellulosic biomass, it is essential to select an adequate bacterial strain and to optimize its fermentation conditions (such as pH, temperature or CaCO3 concentration).


Subject(s)
Butanols/chemical synthesis , Carbohydrates/chemistry , Coffee/chemistry , Fermentation
5.
J Org Chem ; 83(2): 980-992, 2018 01 19.
Article in English | MEDLINE | ID: mdl-29271194

ABSTRACT

A reliable protocol to synthesize both racemic and chiral (E)-4-iodobut-3-en-1-ols from aldehydes or epoxides, respectively, containing various aromatic and aliphatic substitutions has been established. The utility of these compounds was then demonstrated by providing access to known fungal decanolides as well as novel aromatic macrocycles. The protocol provided a gram-scale route to (-)-aspinolide A and (-)-5-epi-aspinolide A utilizing a catalytic Nozaki-Hiyama-Kishi reaction to close the macrolide in the final step in 65-84% yields.


Subject(s)
Butanols/chemical synthesis , Lactones/chemical synthesis , Macrocyclic Compounds/chemical synthesis , Aldehydes/chemistry , Butanols/chemistry , Epoxy Compounds/chemistry , Lactones/chemistry , Macrocyclic Compounds/chemistry , Molecular Structure , Stereoisomerism
6.
Bioresour Technol ; 221: 412-418, 2016 Dec.
Article in English | MEDLINE | ID: mdl-27660992

ABSTRACT

To enhance the butanol productivity and reduce the material cost, acetone, butanol, and ethanol fermentation by Clostridium acetobutylicum SE25 was investigated using batch, repeated-batch and continuous cultures in a fibrous bed bioreactor, where cassava flour was used as the substrate. With periodical nutrient supplementation, stable butanol production was maintained for about 360h in a 6-cycle repeated-batch fermentation with an average butanol productivity of 0.28g/L/h and butanol yield of 0.32g/g-starch. In addition, the highest butanol productivity of 0.63g/L/h and butanol yield of 0.36g/g-starch were achieved when the dilution rate were investigated in continuous production of acetone, butanol, and ethanol using a fibrous bed bioreactor, which were 231.6% and 28.6% higher than those of the free-cell fermentation. On the other hand, this study also successfully comfirmed that the biofilm can provide an effective protection for the microbial cells which are growing in stressful environment.


Subject(s)
Biofilms/growth & development , Bioreactors/microbiology , Butanols/chemical synthesis , Clostridium acetobutylicum/metabolism , Manihot/chemistry , Fermentation , Flour/analysis , Solvents
7.
ChemSusChem ; 9(13): 1680-8, 2016 07 07.
Article in English | MEDLINE | ID: mdl-27226396

ABSTRACT

Rh-MoOx /SiO2 (Mo/Rh=0.13) is an effective catalyst for the hydrogenolysis of 1,4-anhydroerythritol (1,4-AHERY) and provides 2-BuOH in high yield of 51 %. This is the first report of the production of 2-BuOH from 1,4-AHERY by hydrogenolysis. 1,4-AHERY was more suitable as a starting material than erythritol because the 2-BuOH yield from erythritol was low (34 %). Based on the kinetics and comparison of reactivities of the related compounds using Rh-MoOx /SiO2 and Rh/SiO2 catalysts, the modification of Rh/SiO2 with MoOx leads to the high activity and high selectivity to 2-BuOH because of the generation of reactive hydride species and the strong adsorption of 1,4-AHERY on MoOx species. The reaction proceeds by main two routes, (I) the combination of single C-O hydrogenolysis with the desorption of intermediates, a usual route in hydrogenolysis, and (II) multiple C-O hydrogenolysis without the desorption of intermediates from the active site, and the reaction mechanism for Route (II) is proposed.


Subject(s)
Butanols/chemistry , Butanols/chemical synthesis , Erythritol/analogs & derivatives , Molybdenum/chemistry , Oxides/chemistry , Rhodium/chemistry , Silicon Dioxide/chemistry , Chemistry Techniques, Synthetic , Erythritol/chemistry , Hydrogen/chemistry , Kinetics
8.
Biotechnol Prog ; 32(1): 66-73, 2016.
Article in English | MEDLINE | ID: mdl-26560680

ABSTRACT

Producing fuels and chemical intermediates with cell cultures is severely limited by low product concentrations (≤0.2%(v/v)) due to feedback inhibition, cell instability, and lack of economical product recovery processes. We have developed an alternate simplified production scheme based on a cell-free immobilized enzyme system. Two immobilized enzymes (keto-acid decarboxylase (KdcA) and alcohol dehydrogenase (ADH)) and one enzyme in solution (formate dehydrogenase (FDH) for NADH recycle) produced isobutanol titers 8 to 20 times higher than the highest reported titers with S. cerevisiae on a mol/mol basis. These high conversion rates and low protein leaching were achieved by covalent immobilization of enzymes (ADH) and enzyme fusions (fKdcA) on methacrylate resin. The new enzyme system without in situ removal of isobutanol achieved a 55% conversion of ketoisovaleric acid to isobutanol at a concentration of 0.135 (mole isobutanol produced for each mole ketoisovaleric acid consumed). Further increasing titer will require continuous removal of the isobutanol using an in situ recovery system.


Subject(s)
Biofuels , Butanols/chemical synthesis , Carboxy-Lyases/chemistry , Enzymes, Immobilized/chemistry , Alcohol Dehydrogenase/chemistry , Butanols/chemistry , Cell-Free System , Escherichia coli/enzymology , Escherichia coli/genetics , Formate Dehydrogenases/chemistry , Saccharomyces cerevisiae/enzymology , Saccharomyces cerevisiae/genetics
9.
Bioorg Med Chem ; 23(20): 6650-8, 2015 Oct 15.
Article in English | MEDLINE | ID: mdl-26386819

ABSTRACT

Rhododendrol derivatives 3-12 have been synthesized in six steps, including aldol condensation and/or trichloroacetimidate glycosylation as the key reactions. Each derivative showed effective inhibition of tyrosinase-catalyzed oxidation processes. In particular, a series of synthetic derivatives having an R-stereogenic center at C-2 proved to be more potent than their respective epimers. In addition, the glycosylation on the phenylbutanoid scaffold increased the difference in activity between the isomers. This suggests that the sugar moiety plays an important role in eliciting their potent inhibitory activity.


Subject(s)
Butanols/pharmacology , Enzyme Inhibitors/pharmacology , Glycosides/pharmacology , Monophenol Monooxygenase/antagonists & inhibitors , Butanols/chemical synthesis , Butanols/chemistry , Dose-Response Relationship, Drug , Enzyme Inhibitors/chemical synthesis , Enzyme Inhibitors/chemistry , Glycosides/chemical synthesis , Glycosides/chemistry , Molecular Structure , Monophenol Monooxygenase/metabolism , Structure-Activity Relationship
10.
J Biotechnol ; 191: 106-12, 2014 Dec 10.
Article in English | MEDLINE | ID: mdl-25036751

ABSTRACT

The stereoselective production of (R)- or (S)-2-butanol is highly challenging. A potent synthesis strategy is the biocatalytic asymmetric reduction of 2-butanone applying alcohol dehydrogenases. However, due to a time-dependent racemisation process, high stereoselectivity is only obtained at incomplete conversion after short reaction times. Here, we present a solution to this problem: by using a continuous process, high biocatalytic selectivity can be achieved while racemisation is suppressed successfully. Furthermore, high conversion was achieved by applying recombinant, lyophilised E. coli cells hosting Lactobacillus brevis alcohol dehydrogenase in a micro-aqueous solvent-free continuous reaction system. The optimisation of residence time (τ) and 2-butanone concentration boosted both conversion (>99%) and enantiomeric excess (ee) of (R)-2-butanol (>96%). When a residence time of only τ=3.1 min was applied, productivity was extraordinary with a space-time yield of 2278±29g/(L×d), thus exceeding the highest values reported to date by a factor of more than eight. The use of E. coli cells overexpressing an ADH of complementary stereoselectivity yielded a synthesis strategy for (S)-2-butanol with an excellent ee (>98%). Although conversion was only moderate (up to 46%), excellent space-time yields of up to 461g/(L×d) were achieved. The investigated concept represents a synthesis strategy that can also be applied to other biocatalytic processes where racemisation poses a challenge.


Subject(s)
Alcohol Dehydrogenase/chemistry , Biocatalysis , Butanols/chemical synthesis , Escherichia coli/genetics , Alcohol Dehydrogenase/genetics , Butanols/chemistry , Butanones/chemistry , Escherichia coli/enzymology , Levilactobacillus brevis/enzymology , Levilactobacillus brevis/genetics , Recombinant Proteins , Stereoisomerism , Substrate Specificity
11.
Chirality ; 26(12): 811-6, 2014 Dec.
Article in English | MEDLINE | ID: mdl-25065812

ABSTRACT

The lipase-catalyzed enantioselective hydrolysis of acetates containing tetrazole moiety was studied. Among all tested lipases, Novozyme SP 435 allowed to obtain optically active 4-(5-aryl-2H-tetrazol-2yl)butan-2-ol and 1-(5-aryl-2H-tetrazol-2yl)-propan-2-ol and their acetates with the highest optical purities (ee = 95%-99%) and excellent enantioselectivity (E>100). Some of the synthesized tetrazole derivatives were screened for their antifungal activity. Racemic mixtures of 4-[5-(4-chlorophenyl)-2H-tetrazol-2-yl)butan-2-ol as well as pure enantiomers of this compound showed promising antifungal activity against F. sambucinum, F. oxysporum, C. coccodes, and A. niger.


Subject(s)
Antifungal Agents/pharmacology , Butanols/chemistry , Esters/chemistry , Lipase/chemistry , Propanols/chemistry , Tetrazoles/chemistry , Acetates/chemistry , Antifungal Agents/chemistry , Butanols/chemical synthesis , Butanols/pharmacology , Drug Evaluation, Preclinical/methods , Enzymes, Immobilized , Fungal Proteins , Hydrolysis , Inhibitory Concentration 50 , Magnetic Resonance Spectroscopy , Microbial Sensitivity Tests , Propanols/chemical synthesis , Propanols/pharmacology , Stereoisomerism , Structure-Activity Relationship , Tetrazoles/chemical synthesis , Tetrazoles/pharmacology
12.
Bioresour Technol ; 161: 263-9, 2014 Jun.
Article in English | MEDLINE | ID: mdl-24717319

ABSTRACT

This paper presents a novel process for n-butanol production which combines a fermentation consuming carbon dioxide (succinic acid fermentation) with subsequent catalytic reduction steps to add hydrogen to form butanol. Process simulations in Aspen Plus have been the basis for the techno-economic analyses performed. The overall economy for the novel process cannot be justified, as production of succinic acid by fermentation is too costly. Though, succinic acid price is expected to drop drastically in a near future. By fully integrating the succinic acid fermentation with the catalytic conversion the need for costly recovery operations could be reduced. The hybrid process would need 22% less raw material than the butanol fermentation at a succinic acid fermentation yield of 0.7g/g substrate. Additionally, a carbon dioxide fixation of up to 13ktonnes could be achieved at a plant with an annual butanol production of 10ktonnes.


Subject(s)
Butanols/chemical synthesis , Fermentation , Succinic Acid/metabolism , Butanols/economics , Catalysis , Succinic Acid/economics
13.
Bioorg Med Chem Lett ; 24(1): 122-5, 2014 Jan 01.
Article in English | MEDLINE | ID: mdl-24332496

ABSTRACT

The concise synthesis of rhododendrol glycosides 3-8, which are novel derivatives of (+)-epirhododendrin (1) and (-)-rhododendrin (2), has been achieved in six steps from benzaldehyde 9. The key reactions include aldol condensation and trichloroacetimidate glycosylation. From biological studies, it has been determined that synthetic derivatives of 1 and 2 possess potent tyrosinase inhibitory activity. Particularly, the inhibitory activity of cellobioside 8 (IC50=1.51µM) is six times higher than that of kojic acid. The R-epimers (4, 6, and 8) possessed more potent activity than the corresponding S-epimers (3, 5, and 7), indicating that tyrosinase inhibitory activity is significantly governed by stereochemistry of rhododendrol glycosides.


Subject(s)
Butanols/chemical synthesis , Butanols/pharmacology , Enzyme Inhibitors/pharmacology , Glycosides/chemical synthesis , Glycosides/pharmacology , Monophenol Monooxygenase/antagonists & inhibitors , Butanols/chemistry , Dose-Response Relationship, Drug , Enzyme Inhibitors/chemical synthesis , Enzyme Inhibitors/chemistry , Glycosides/chemistry , Molecular Structure , Monophenol Monooxygenase/metabolism , Structure-Activity Relationship
14.
Bioorg Med Chem Lett ; 22(8): 2811-7, 2012 Apr 15.
Article in English | MEDLINE | ID: mdl-22444683

ABSTRACT

A new structural class of potent prolylcarboxypeptidase (PrCP) inhibitors was discovered by high-throughput screening. The series possesses a tractable SAR profile with sub-nanomolar in vitro IC(50) values. Compared to prior inhibitors, the new series demonstrated minimal activity shifts in pure plasma and complete ex vivo plasma target engagement in mouse plasma at the 20 h post-dose time point (po). In addition, the in vivo level of CNS and non-CNS drug exposure was measured.


Subject(s)
Carboxypeptidases/antagonists & inhibitors , Drug Discovery , Enzyme Inhibitors , Animals , Butanols/chemical synthesis , Butanols/chemistry , Butanols/pharmacology , Enzyme Activation/drug effects , Enzyme Inhibitors/chemistry , Enzyme Inhibitors/pharmacology , Inhibitory Concentration 50 , Male , Mice , Mice, Inbred C57BL , Molecular Structure , Obesity/drug therapy , Pyrrolidines/chemical synthesis , Pyrrolidines/chemistry , Pyrrolidines/pharmacology
15.
Eur J Med Chem ; 47(1): 351-9, 2012 Jan.
Article in English | MEDLINE | ID: mdl-22118829

ABSTRACT

A group of 4-(benzyloxy)-1-phenylbut-2-yn-1-ol derivatives were designed using Site point connection method, synthesized and evaluated for their 5-Lipoxygenase (5-LOX) inhibitory activity. Hydrophobic site points in 5-LOX were considered for the study and substitutions were planned such that 4k will have strong hydrophobic group in the corresponding site point. Biological results supported the in silico prediction with compound 4k exhibiting good inhibition with IC(50) value of 8 µM against 5-LOX. The compounds 4j and 4k showed potent cytotoxic effects against various cancer cell lines (COLO-205, MDA-MB-231 and HepG2) but with no effect on normal cell line (HaCaT). The overall trend showed 4k as the most potent compound. Further studies demonstrated the protective effect of 4k in mouse Acute Lung Injury (ALI) model induced by lipopolysaccharide (LPS).


Subject(s)
Arachidonate 5-Lipoxygenase/metabolism , Benzyl Compounds/chemistry , Benzyl Compounds/pharmacology , Butanols/chemistry , Butanols/pharmacology , Drug Design , Lipoxygenase Inhibitors/chemistry , Lipoxygenase Inhibitors/pharmacology , Acute Lung Injury/chemically induced , Acute Lung Injury/pathology , Acute Lung Injury/prevention & control , Animals , Arachidonate 5-Lipoxygenase/chemistry , Benzyl Compounds/chemical synthesis , Butanols/chemical synthesis , Catalytic Domain , Cell Line, Tumor , Cell Proliferation/drug effects , Humans , Inhibitory Concentration 50 , Lipopolysaccharides/pharmacology , Lipoxygenase Inhibitors/chemical synthesis , Mice , Models, Molecular , Structure-Activity Relationship
16.
Bioresour Technol ; 102(21): 9985-90, 2011 Nov.
Article in English | MEDLINE | ID: mdl-21893411

ABSTRACT

Mixed sugars from tropical maize stalk juice were used to carry out butanol fermentation with Clostridium beijerinckii NCIMB 8052. Batch experiments employing central composite design (CCD) and response surface methodology (RSM) optimization were performed to evaluate effects of three factors, i.e. pH, initial total sugar concentration, and agitation rate on butanol production. Optimum conditions of pH 6.7, sugar concentration 42.2g/L and agitation rate 48 rpm were predicted, under which a maximum butanol yield of 0.27 g/g-sugar was estimated. Further experiments demonstrated that higher agitation facilitated acetone production, leading to lower butanol selectivity in total acetone-butanol-ethanol (ABE). While glucose and fructose are more preferable by C. beijerinckii, sucrose can also be easily degraded by the microorganism. This study indicated that RSM is a useful approach for optimizing operational conditions for butanol production, and demonstrated that tropical maize, with high yield of biomass and stalk sugars, is a promising biofuel crop.


Subject(s)
Biotechnology/methods , Butanols/chemical synthesis , Clostridium beijerinckii/metabolism , Fermentation/physiology , Tropical Climate , Waste Products/analysis , Zea mays/chemistry , Acetone/metabolism , Carbohydrate Metabolism/drug effects , Carbohydrates/pharmacology , Clostridium beijerinckii/drug effects , Fermentation/drug effects , Hydrogen-Ion Concentration/drug effects , Regression Analysis , Reproducibility of Results , Solvents
17.
Bioresour Technol ; 102(2): 2112-7, 2011 Jan.
Article in English | MEDLINE | ID: mdl-20843683

ABSTRACT

In this study, the potential of biobutanol was evaluated as an alternative to bioethanol which is currently the predominant liquid biofuel in the US. Life-cycle assessments (LCAs) suggest that the net energy generated during corn-to-biobutanol conversion is 6.53 MJ/L, which is greater than that of the corn-derived bioethanol (0.40 MJ/L). Additionally, replacing corn with lignocellulosic materials in bioethanol production can further increase the net energy to 15.90 MJ/L. Therefore, it was interesting to study the possibility of using domestically produced switchgrass, hybrid poplar, corn stover, and wheat straw as feedstocks to produce liquid biofuels in the US. By sustainable harvest based on current yields, these materials can be converted to 8.27 billion gallons of biobutanol replacing 7.55 billion gallons of gasoline annually. To further expand the scale, significant crop yield increases and appropriate land use changes are considered two major requirements.


Subject(s)
Biofuels/analysis , Biomass , Butanols/chemical synthesis , Ethanol/chemical synthesis , Feasibility Studies , Fermentation , Lignin/metabolism , Thermodynamics
18.
Eur J Med Chem ; 46(1): 183-90, 2011 Jan.
Article in English | MEDLINE | ID: mdl-21111516

ABSTRACT

This study presents the synthesis of novel substituted 4-hydroxybutanamides and their influence on the activity of murine GABA transport proteins GAT1-GAT4. The active compounds, derivatives of N-arylalkyl-2-(4-diphenylmethylpiperazin-1-yl)-4-hydroxybutyramide, are characterized by pIC(50) values in range of 3.92-5.06 and by slight subtype-selectivity. Among them N-4-chlorobenzylamide was the most potent GAT inhibitor (mGAT3), while N-benzylamide was the most active in GAT1-binding assay (pK(i) = 4.96). The results pointed out that benzhydryl and benzylamide moieties are crucial for the activity of this class of compounds as murine GAT inhibitors.


Subject(s)
Anticonvulsants/chemistry , Anticonvulsants/pharmacology , Butanols/chemistry , Butanols/pharmacology , GABA Uptake Inhibitors/chemistry , GABA Uptake Inhibitors/pharmacology , gamma-Aminobutyric Acid/metabolism , Animals , Anticonvulsants/chemical synthesis , Biological Transport/drug effects , Butanols/chemical synthesis , Drug Evaluation, Preclinical , GABA Plasma Membrane Transport Proteins/metabolism , GABA Uptake Inhibitors/chemical synthesis , Inhibitory Concentration 50 , Mice
19.
Bioorg Med Chem Lett ; 20(16): 4789-94, 2010 Aug 15.
Article in English | MEDLINE | ID: mdl-20634069

ABSTRACT

Herein we describe further evolution of hydroxyethylamine inhibitors of BACE-1 with enhanced permeability characteristics necessary for CNS penetration. Variation at the P2' position of the inhibitor with more polar substituents led to compounds 19 and 32, which retained the potency of more lipophilic analog 1 but with much higher observed passive permeability in MDCK cellular assay.


Subject(s)
Acetamides/chemistry , Amyloid Precursor Protein Secretases/antagonists & inhibitors , Aspartic Acid Endopeptidases/antagonists & inhibitors , Butanols/chemistry , Cyclohexylamines/chemistry , Protease Inhibitors/chemistry , Acetamides/chemical synthesis , Acetamides/pharmacokinetics , Amyloid Precursor Protein Secretases/metabolism , Aspartic Acid Endopeptidases/metabolism , Binding Sites , Butanols/chemical synthesis , Butanols/pharmacokinetics , Cell Membrane Permeability/drug effects , Crystallography, X-Ray , Cyclohexylamines/chemical synthesis , Cyclohexylamines/pharmacokinetics , Humans , Protease Inhibitors/chemical synthesis , Protease Inhibitors/pharmacokinetics , Structure-Activity Relationship
20.
BMC Syst Biol ; 4: 35, 2010 Mar 28.
Article in English | MEDLINE | ID: mdl-20346180

ABSTRACT

BACKGROUND: There have been several methods developed for the prediction of synthetic metabolic pathways leading to the production of desired chemicals. In these approaches, novel pathways were predicted based on chemical structure changes, enzymatic information, and/or reaction mechanisms, but the approaches generating a huge number of predicted results are difficult to be applied to real experiments. Also, some of these methods focus on specific pathways, and thus are limited to expansion to the whole metabolism. RESULTS: In the present study, we propose a system framework employing a retrosynthesis model with a prioritization scoring algorithm. This new strategy allows deducing the novel promising pathways for the synthesis of a desired chemical together with information on enzymes involved based on structural changes and reaction mechanisms present in the system database. The prioritization scoring algorithm employing Tanimoto coefficient and group contribution method allows examination of structurally qualified pathways to recognize which pathway is more appropriate. In addition, new concepts of binding site covalence, estimation of pathway distance and organism specificity were taken into account to identify the best synthetic pathway. Parameters of these factors can be evolutionarily optimized when a newly proven synthetic pathway is registered. As the proofs of concept, the novel synthetic pathways for the production of isobutanol, 3-hydroxypropionate, and butyryl-CoA were predicted. The prediction shows a high reliability, in which experimentally verified synthetic pathways were listed within the top 0.089% of the identified pathway candidates. CONCLUSIONS: It is expected that the system framework developed in this study would be useful for the in silico design of novel metabolic pathways to be employed for the efficient production of chemicals, fuels and materials.


Subject(s)
Bacteria/metabolism , Systems Biology/methods , Acyl Coenzyme A/chemical synthesis , Algorithms , Binding Sites , Biofuels , Butanols/chemical synthesis , Chemistry, Organic/methods , Chemistry, Pharmaceutical/methods , Escherichia coli/metabolism , Lactic Acid/analogs & derivatives , Lactic Acid/chemical synthesis , Models, Theoretical , Thermodynamics
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