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1.
Biomed Phys Eng Express ; 10(4)2024 May 14.
Article in English | MEDLINE | ID: mdl-38697045

ABSTRACT

Whole-body counters (WBC) are used in internal dosimetry forin vivomonitoring in radiation protection. The calibration processes of a WBC set-up include the measurement of a physical phantom filled with a certificate radioactive source that usually is referred to a standard set of individuals determined by the International Commission on Radiological Protection (ICRP). The aim of this study was to develop an anthropomorphic and anthropometric female physical phantom for the calibration of the WBC systems. The reference female computational phantom of the ICRP, now called RFPID (Reference Female Phantom for Internal Dosimetry) was printed using PLA filament and with an empty interior. The goal is to use the RFPID to reduce the uncertainties associated within vivomonitoring system. The images which generated the phantom were manipulated using ImageJ®, Amide®, GIMP®and the 3D Slicer®software. RFPID was split into several parts and printed using a 3D printer in order to print the whole-body phantom. The newly printed physical phantom RFPID was successfully fabricated, and it is suitable to mimic human tissue, anatomically similar to a human body i.e., size, shape, material composition, and density.


Subject(s)
Phantoms, Imaging , Printing, Three-Dimensional , Whole-Body Counting , Humans , Female , Whole-Body Counting/methods , Calibration , Radiation Protection/methods , Radiation Protection/instrumentation , Radiometry/methods , Radiometry/instrumentation , Anthropometry
2.
Radiat Environ Biophys ; 63(2): 195-202, 2024 May.
Article in English | MEDLINE | ID: mdl-38709277

ABSTRACT

This study investigated natural sand thermoluminescence (TL) response as a possible option for retrospective high-dose gamma dosimetry. The natural sand under investigation was collected from six locations with selection criteria for sampling sites covering the highest probability of exposure to unexpected radiation on the Egyptian coast. Dose-response, glow curve, chemical composition, linearity, and fading rate for different sand samples were studied. Energy Dispersive X-ray Spectroscopy (EDX) analysis revealed differences in chemical composition among the various geological sites, leading to variations in TL glow curve intensity. Sand samples collected from Ras Sedr, Taba, Suez, and Enshas showed similar TL patterns, although with different TL intensities. Beach sands of Matrouh and North Coastal with a high calcite content did not show a clear linear response to the TL technique, in the dose range of 10 Gy up to 30 kGy. The results show that most sand samples are suitable as a radiation dosimeter at accidental levels of exposure. It is proposed here that for high-dose gamma dosimetry with doses ranging from 3 to 10 kGy, a single calibration factor might be enough for TL measurements using sand samples. However, proper calibration might allow dose assessment for doses even up to 30 kGy. Most of the investigated sand samples had nearly stable fading rates after seven days of storage. The Ras Sedr sands sample was the most reliable for retrospective dose reconstruction.


Subject(s)
Sand , Thermoluminescent Dosimetry , Gamma Rays , Radiation Dosage , Calibration
3.
PLoS One ; 19(5): e0301689, 2024.
Article in English | MEDLINE | ID: mdl-38728315

ABSTRACT

Acoustic methods are often used for fisheries resource surveys to investigate fish stocks in a wide area. Commercial fisheries echo sounders, which are installed on most small fishing vessels, are used to record a large amount of data during fishing trips. Therefore, it can be used to collect the basic information necessary for stock assessment for a wide area and frequently. To carry out the quantification for the fisheries echo sounder, we devised a simple method using the backscattering strength of the seabed to perform calibration periodically and easily. In this study, seabed secondary reflections were used instead of primary reflection because the fisheries echo sounders were not equipped with a time-varied gain (TVG) function, and the primary backscattering strength of the seabed was saturated. It was also necessary to use standard values of seabed backscattering strength averaged over a certain area for calibration to eliminate some of the effects of differences in seabed sediment and vessel motions. By using standard values of the seabed secondary reflections, the fisheries echo sounder was calibrated accurately. Our study can provide a reliable framework to calibrate commercial fisheries echo sounders, to improve the estimation and management of fishery resources.


Subject(s)
Fisheries , Calibration , Animals , Acoustics/instrumentation , Fishes/physiology , Conservation of Natural Resources/methods
4.
J Transl Med ; 22(1): 455, 2024 May 13.
Article in English | MEDLINE | ID: mdl-38741163

ABSTRACT

BACKGROUND: Patients with alpha-fetoprotein (AFP)-positive hepatocellular carcinoma (HCC) have aggressive biological behavior and poor prognosis. Therefore, survival time is one of the greatest concerns for patients with AFP-positive HCC. This study aimed to demonstrate the utilization of six machine learning (ML)-based prognostic models to predict overall survival of patients with AFP-positive HCC. METHODS: Data on patients with AFP-positive HCC were extracted from the Surveillance, Epidemiology, and End Results database. Six ML algorithms (extreme gradient boosting [XGBoost], logistic regression [LR], support vector machine [SVM], random forest [RF], K-nearest neighbor [KNN], and decision tree [ID3]) were used to develop the prognostic models of patients with AFP-positive HCC at one year, three years, and five years. Area under the receiver operating characteristic curve (AUC), confusion matrix, calibration curves, and decision curve analysis (DCA) were used to evaluate the model. RESULTS: A total of 2,038 patients with AFP-positive HCC were included for analysis. The 1-, 3-, and 5-year overall survival rates were 60.7%, 28.9%, and 14.3%, respectively. Seventeen features regarding demographics and clinicopathology were included in six ML algorithms to generate a prognostic model. The XGBoost model showed the best performance in predicting survival at 1-year (train set: AUC = 0.771; test set: AUC = 0.782), 3-year (train set: AUC = 0.763; test set: AUC = 0.749) and 5-year (train set: AUC = 0.807; test set: AUC = 0.740). Furthermore, for 1-, 3-, and 5-year survival prediction, the accuracy in the training and test sets was 0.709 and 0.726, 0.721 and 0.726, and 0.778 and 0.784 for the XGBoost model, respectively. Calibration curves and DCA exhibited good predictive performance as well. CONCLUSIONS: The XGBoost model exhibited good predictive performance, which may provide physicians with an effective tool for early medical intervention and improve the survival of patients.


Subject(s)
Carcinoma, Hepatocellular , Liver Neoplasms , Machine Learning , alpha-Fetoproteins , Carcinoma, Hepatocellular/blood , Carcinoma, Hepatocellular/diagnosis , Carcinoma, Hepatocellular/pathology , Carcinoma, Hepatocellular/mortality , Humans , alpha-Fetoproteins/metabolism , Liver Neoplasms/blood , Liver Neoplasms/diagnosis , Liver Neoplasms/pathology , Liver Neoplasms/mortality , Female , Prognosis , Male , Middle Aged , ROC Curve , Aged , Area Under Curve , Calibration , Algorithms
5.
Int J Mol Sci ; 25(10)2024 May 07.
Article in English | MEDLINE | ID: mdl-38791122

ABSTRACT

High-resolution melting (HRM) is a cost-efficient tool for targeted DNA methylation analysis. HRM yields the average methylation status across all CpGs in PCR products. Moreover, it provides information on the methylation pattern, e.g., the occurrence of monoallelic methylation. HRM assays have to be calibrated by analyzing DNA methylation standards of known methylation status and mixtures thereof. In general, DNA methylation levels determined by the classical calibration approach, including the whole temperature range in between normalization intervals, are in good agreement with the mean of the DNA methylation status of individual CpGs determined by pyrosequencing (PSQ), the gold standard of targeted DNA methylation analysis. However, the classical calibration approach leads to highly inaccurate results for samples with heterogeneous DNA methylation since they result in more complex melt curves, differing in their shape compared to those of DNA standards and mixtures thereof. Here, we present a novel calibration approach, i.e., temperature-wise calibration. By temperature-wise calibration, methylation profiles over temperature are obtained, which help in finding the optimal calibration range and thus increase the accuracy of HRM data, particularly for heterogeneous DNA methylation. For explaining the principle and demonstrating the potential of the novel calibration approach, we selected the promoter and two enhancers of MGMT, a gene encoding the repair protein MGMT.


Subject(s)
DNA Methylation , Nucleic Acid Denaturation , Calibration , Humans , Promoter Regions, Genetic , DNA Modification Methylases/genetics , Tumor Suppressor Proteins/genetics , Temperature , DNA Repair Enzymes/genetics , CpG Islands , Sequence Analysis, DNA/methods , Sequence Analysis, DNA/standards , DNA/genetics
6.
J Trace Elem Med Biol ; 84: 127467, 2024 Jul.
Article in English | MEDLINE | ID: mdl-38704916

ABSTRACT

BACKGROUND: Mercury (Hg) is a persistent pollutant occurring in the environment able to transition between different species. It can therefore be found in air, soil and water reservoirs becoming a present concern for the general population but also sensitive populations like pregnant women. Therefore, investigating organ-specific transfer mechanisms of Hg is mandatory for Hg toxicity testing. For this, an in vitro system using microporous inserts to monitor the transfer across an in vitro placental barrier has been used. However, due to the cytotoxicity of Hg only low concentrations (1.26 ×10-4 - 1.36 ×10-2 µg/µL Hg) can be applied, making Hg determination in cell culture medium using inductively coupled plasma-optical emission spectrometry challenging, especially when these trace amounts should be determined alongside other trace elements which are naturally occurring in cells and cell culture medium like the essential metals manganese (Mn), iron (Fe), copper (Cu), and zinc (Zn). Additionally, Hg analysis on an ICP system holds also a number of challenges like a persistent memory effect and instability of Hg standard solutions. METHODS: The development of a rapid and sensitive ICP-OES method to determine Hg in different matrices like cell culture medium and cells has been performed on an Avio 220 Max ICP-OES (Perkin-Elmer) equipped with a cyclonic spray chamber and MicroMist® nebulizer. Cell lysates and cell culture medium were diluted in a mixture of 0.2 % L-cysteine, 2 % HNO3 and 0.1 % HCl and directly introduced into the ICP-OES system. Further method development included the suitability of the analysis of multiple elements like Mn, Fe, Cu, and Zn as well as the determination of the limit of detection and limit of quantification. RESULTS: The combination of 0.2 % L-cysteine, 2 % HNO3 and 0.1 % HCl is able to bind and stabilize Hg ions in standard solutions and in biological matrices over a wide dynamic concentration range (1 - 500 µg/L) also alongside other metals like Mn, Fe, Cu and Zn without losses of sensitivity. A short run time of 3 min enables high throughput analysis. Additionally, the high salt and carbon concentrations in the culture medium do not affect Hg sensitivity using the ICP-OES. CONCLUSION: This method is a useful tool for the quantification of Hg in a variety of complex matrices including cells and cell culture media (high salt and carbon-rich (∼1 % each)) with high sensitivity and minimal sample preparation allowing high throughput. Furthermore, not only Hg can be determined in biological matrices, but even multiple elemental analysis can be carried out to address the effect of Hg on other metals homeostasis.


Subject(s)
Cysteine , Mercury , Mercury/analysis , Cysteine/analysis , Cysteine/chemistry , Humans , Calibration
7.
Physiol Meas ; 45(5)2024 May 31.
Article in English | MEDLINE | ID: mdl-38722570

ABSTRACT

Objective.Impedance pneumography (IP) has provided static assessments of subjects' breathing patterns in previous studies. Evaluating the feasibility and limitation of ambulatory IP based respiratory monitoring needs further investigation on clinically relevant exercise designs. The aim of this study was to evaluate the capacity of an advanced IP in ambulatory respiratory monitoring, and its predictive value in independent ventilatory capacity quantification during cardiopulmonary exercise testing (CPET).Approach.35 volunteers were examined with the same calibration methodology and CPET exercise protocol comprising phases of rest, unloaded, incremental load, maximum load, recovery and further-recovery. In 3 or 4 deep breaths of calibration stage, thoracic impedance and criterion spirometric volume were simultaneously recorded to produce phase-specific prior calibration coefficients (CCs). The IP measurement during exercise protocol was converted by prior CCs to volume estimation curve and thus calculate minute ventilation (VE) independent from the spirometry approach.Main results.Across all measurements, the relative error of IP-derived VE (VER) and flowrate-derived VE (VEf) was less than 13.8%. In Bland-Altman plots, the aggregate VE estimation bias was statistically insignificant for all 3 phases with pedaling exercise and the discrepancy between VERand VEffell within the 95% limits of agreement (95% LoA) for 34 or all subjects in each of all CPET phases.Significance.This work reinforces the independent use of IP as an accurate and robust alternative to flowmeter for applications in cycle ergometry CPET, which could significantly encourage the clinical use of IP and improve the convenience and comfort of CPET.


Subject(s)
Electric Impedance , Pulmonary Ventilation , Humans , Male , Female , Adult , Pulmonary Ventilation/physiology , Exercise Test , Young Adult , Calibration , Exercise/physiology , Bicycling/physiology , Monitoring, Physiologic/methods
8.
Sensors (Basel) ; 24(9)2024 Apr 30.
Article in English | MEDLINE | ID: mdl-38732969

ABSTRACT

The recent scientific literature abounds in proposals of seizure forecasting methods that exploit machine learning to automatically analyze electroencephalogram (EEG) signals. Deep learning algorithms seem to achieve a particularly remarkable performance, suggesting that the implementation of clinical devices for seizure prediction might be within reach. However, most of the research evaluated the robustness of automatic forecasting methods through randomized cross-validation techniques, while clinical applications require much more stringent validation based on patient-independent testing. In this study, we show that automatic seizure forecasting can be performed, to some extent, even on independent patients who have never been seen during the training phase, thanks to the implementation of a simple calibration pipeline that can fine-tune deep learning models, even on a single epileptic event recorded from a new patient. We evaluate our calibration procedure using two datasets containing EEG signals recorded from a large cohort of epileptic subjects, demonstrating that the forecast accuracy of deep learning methods can increase on average by more than 20%, and that performance improves systematically in all independent patients. We further show that our calibration procedure works best for deep learning models, but can also be successfully applied to machine learning algorithms based on engineered signal features. Although our method still requires at least one epileptic event per patient to calibrate the forecasting model, we conclude that focusing on realistic validation methods allows to more reliably compare different machine learning approaches for seizure prediction, enabling the implementation of robust and effective forecasting systems that can be used in daily healthcare practice.


Subject(s)
Algorithms , Deep Learning , Electroencephalography , Seizures , Humans , Electroencephalography/methods , Seizures/diagnosis , Seizures/physiopathology , Calibration , Signal Processing, Computer-Assisted , Epilepsy/diagnosis , Epilepsy/physiopathology , Machine Learning
9.
Spectrochim Acta A Mol Biomol Spectrosc ; 316: 124287, 2024 Aug 05.
Article in English | MEDLINE | ID: mdl-38701573

ABSTRACT

The application of Near Infrared (NIR) spectroscopy for analyzing wet feed directly on farms is increasingly recognized for its role in supporting harvest-time decisions and refining the precision of animal feeding practices. This study aims to evaluate the accuracy of NIR spectroscopy calibrations for both undried, unprocessed samples and dried, ground samples. Additionally, it investigates the influence of the bases of reference data (wet vs. dry basis) on the predictive capabilities of the NIR analysis. The study utilized 492 Corn Whole Plant (CWP) and 405 High Moisture Corn (HMC) samples, sourced from various farms across Italy. Spectral data were acquired from both undried, unground and dried, ground samples using laboratory bench NIR instruments, covering a spectral range of 1100 to 2498 nm. The reference chemical composition of these samples was analyzed and presented in two formats: on a wet matter basis and on a dry matter basis. The study revealed that calibrations based on undried samples generally exhibited lower predictive accuracy for most traits, with the exception of Dry Matter (DM). Notably, the decline in predictive performance was more pronounced in highly moist products like CWP, where the average error increased by 60-70%. Conversely, this reduction in accuracy was relatively contained (10-15%) in drier samples such as HMC. The Standard Error of Cross-Validation (SECV) values for DMres, Ash, CP, and EE were notably low, at 0.39, 0.30, 0.29, 0.21% for CWP and 0.49, 0.14, 0.25, 0.14% for HMC, respectively. These results align with previous studies, indicating the reliability of NIR spectroscopy in diverse moisture contexts. The study attributes this variance to the interference caused by water in 'as is' samples, where the spectral features predominantly reflect water content, thereby obscuring the spectral signatures of other nutrients. In terms of calibration development strategies, the study concludes that there is no significant difference in predictive performance between undried calibrations based on either 'dry matter' or 'as is' basis. This finding emphasizes the potential of NIR spectroscopy in diverse moisture contexts, although with varying degrees of accuracy contingent upon the moisture content of the analyzed samples. Overall, this research provides valuable insights into the calibration strategies of NIR spectroscopy and its practical applications in agricultural settings, particularly for on-farm forage analysis.


Subject(s)
Animal Feed , Spectroscopy, Near-Infrared , Zea mays , Spectroscopy, Near-Infrared/methods , Calibration , Zea mays/chemistry , Animal Feed/analysis , Water/analysis , Water/chemistry , Desiccation
10.
Spectrochim Acta A Mol Biomol Spectrosc ; 317: 124394, 2024 Sep 05.
Article in English | MEDLINE | ID: mdl-38723467

ABSTRACT

A fast, simple and reagent-free detection method for aflatoxin B1 (AFB1) is of great significance to food safety and human health. Visible and near-infrared (Vis-NIR) spectroscopy was applied to the discriminant analysis of AFB1 excessive standard of peanut meal as feedstuff materials. Two types of excessive standard discriminant models based on spectral quantitative analysis with partial least squares (PLS) and direct pattern recognition with partial least squares-discrimination analysis (PLS-DA) were established, respectively. Multi-parameter optimization of Norris derivative filtering (NDF) was used for spectral preprocessing; the two-stage wavelength screening method based on equidistant combination-wavelength step-by-step phase-out (EC-WSP) was used for wavelength optimization. A rigorous sample experimental design of calibration-prediction-validation was utilized. The calibration and prediction samples were used for modeling and parameter optimization, and the selected model was validated using the independent validation samples. For quantitative analysis-based, the positive, negative and total recognition-accuracy rates in validation (RARV+, RARV-, and RARV) were 84.8 %, 74.6 % and 79.8 %, respectively; but, the relative root mean square error of prediction was as high as 51.0 %. For pattern recognition-based, the RARV+, RARV-, and RARV were 93.3 %, 90.5 % and 91.9 %, respectively. Moreover, the number of wavelengths N was drastically reduced to 17, and the discrete wavelength combination was in NIR overtone frequency region. The results indicated that, the EC-WSP-PLS-DA model achieved significantly better discrimination effect. Thus demonstrated that Vis-NIR spectroscopy has feasibility for the excessive standard discrimination of aflatoxin B1 in feedstuff materials.


Subject(s)
Aflatoxin B1 , Arachis , Spectroscopy, Near-Infrared , Aflatoxin B1/analysis , Arachis/chemistry , Spectroscopy, Near-Infrared/methods , Discriminant Analysis , Least-Squares Analysis , Food Contamination/analysis , Calibration , Reproducibility of Results
11.
Comput Methods Programs Biomed ; 251: 108189, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38728827

ABSTRACT

BACKGROUND AND OBJECTIVE: Simulation of cardiac electrophysiology (CEP) is an important research tool that is increasingly being adopted in industrial and clinical applications. Typical workflows for CEP simulation consist of a sequence of processing stages starting with building an anatomical model and then calibrating its electrophysiological properties to match observable data. While the calibration stages are common and generalizable, most CEP studies re-implement these steps in complex and highly variable workflows. This lack of standardization renders the execution of computational CEP studies in an efficient, robust, and reproducible manner a significant challenge. Here, we propose ForCEPSS as an efficient and robust, yet flexible, software framework for standardizing CEP simulation studies. METHODS AND RESULTS: Key processing stages of CEP simulation studies are identified and implemented in a standardized workflow that builds on openCARP1 Plank et al. (2021) and the Python-based carputils2 framework. Stages include (i) the definition and initialization of action potential phenotypes, (ii) the tissue scale calibration of conduction properties, (iii) the functional initialization to approximate a limit cycle corresponding to the dynamic reference state according to an experimental protocol, and, (iv) the execution of the CEP study where the electrophysiological response to a perturbation of the limit cycle is probed. As an exemplar application, we employ ForCEPSS to prepare a CEP study according to the Virtual Arrhythmia Risk Prediction protocol used for investigating the arrhythmogenic risk of developing infarct-related ventricular tachycardia (VT) in ischemic cardiomyopathy patients. We demonstrate that ForCEPSS enables a fully automated execution of all stages of this complex protocol. CONCLUSION: ForCEPSS offers a novel comprehensive, standardized, and automated CEP simulation workflow. The high degree of automation accelerates the execution of CEP simulation studies, reduces errors, improves robustness, and makes CEP studies reproducible. Verification of simulation studies within the CEP modeling community is thus possible. As such, ForCEPSS makes an important contribution towards increasing transparency, standardization, and reproducibility of in silico CEP experiments.


Subject(s)
Action Potentials , Computer Simulation , Software , Humans , Arrhythmias, Cardiac/physiopathology , Cardiac Electrophysiology , Calibration , Models, Cardiovascular , Heart/physiology
12.
Comput Methods Programs Biomed ; 251: 108208, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38754326

ABSTRACT

BACKGROUND AND OBJECTIVE: Intracortical brain-computer interfaces (iBCIs) aim to help paralyzed individuals restore their motor functions by decoding neural activity into intended movement. However, changes in neural recording conditions hinder the decoding performance of iBCIs, mainly because the neural-to-kinematic mappings shift. Conventional approaches involve either training the neural decoders using large datasets before deploying the iBCI or conducting frequent calibrations during its operation. However, collecting data for extended periods can cause user fatigue, negatively impacting the quality and consistency of neural signals. Furthermore, frequent calibration imposes a substantial computational load. METHODS: This study proposes a novel approach to increase iBCIs' robustness against changing recording conditions. The approach uses three neural augmentation operators to generate augmented neural activity that mimics common recording conditions. Then, contrastive learning is used to learn latent factors by maximizing the similarity between the augmented neural activities. The learned factors are expected to remain stable despite varying recording conditions and maintain a consistent correlation with the intended movement. RESULTS: Experimental results demonstrate that the proposed iBCI outperformed the state-of-the-art iBCIs and was robust to changing recording conditions across days for long-term use on one publicly available nonhuman primate dataset. It achieved satisfactory offline decoding performance, even when a large training dataset was unavailable. CONCLUSIONS: This study paves the way for reducing the need for frequent calibration of iBCIs and collecting a large amount of annotated training data. Potential future works aim to improve offline decoding performance with an ultra-small training dataset and improve the iBCIs' robustness to severely disabled electrodes.


Subject(s)
Brain-Computer Interfaces , Animals , Algorithms , Calibration , Humans , Signal Processing, Computer-Assisted , Movement
13.
Article in English | MEDLINE | ID: mdl-38781061

ABSTRACT

Steady-state visual-evoked potential (SSVEP)-based brain-computer interfaces (BCIs) offer a non-invasive means of communication through high-speed speller systems. However, their efficiency is highly dependent on individual training data acquired during time-consuming calibration sessions. To address the challenge of data insufficiency in SSVEP-based BCIs, we introduce SSVEP-DAN, the first dedicated neural network model designed to align SSVEP data across different domains, encompassing various sessions, subjects, or devices. Our experimental results demonstrate the ability of SSVEP-DAN to transform existing source SSVEP data into supplementary calibration data. This results in a significant improvement in SSVEP decoding accuracy while reducing the calibration time. We envision SSVEP-DAN playing a crucial role in future applications of high-performance SSVEP-based BCIs. The source code for this work is available at: https://github.com/CECNL/SSVEP-DAN.


Subject(s)
Algorithms , Brain-Computer Interfaces , Electroencephalography , Evoked Potentials, Visual , Humans , Evoked Potentials, Visual/physiology , Male , Adult , Female , Neural Networks, Computer , Young Adult , Calibration , Reproducibility of Results
14.
Article in English | MEDLINE | ID: mdl-38598403

ABSTRACT

Steady-state visual evoked potential (SSVEP), one of the most popular electroencephalography (EEG)-based brain-computer interface (BCI) paradigms, can achieve high performance using calibration-based recognition algorithms. As calibration-based recognition algorithms are time-consuming to collect calibration data, the least-squares transformation (LST) has been used to reduce the calibration effort for SSVEP-based BCI. However, the transformation matrices constructed by current LST methods are not precise enough, resulting in large differences between the transformed data and the real data of the target subject. This ultimately leads to the constructed spatial filters and reference templates not being effective enough. To address these issues, this paper proposes multi-stimulus LST with online adaptation scheme (ms-LST-OA). METHODS: The proposed ms-LST-OA consists of two parts. Firstly, to improve the precision of the transformation matrices, we propose the multi-stimulus LST (ms-LST) using cross-stimulus learning scheme as the cross-subject data transformation method. The ms-LST uses the data from neighboring stimuli to construct a higher precision transformation matrix for each stimulus to reduce the differences between transformed data and real data. Secondly, to further optimize the constructed spatial filters and reference templates, we use an online adaptation scheme to learn more features of the EEG signals of the target subject through an iterative process trial-by-trial. RESULTS: ms-LST-OA performance was measured for three datasets (Benchmark Dataset, BETA Dataset, and UCSD Dataset). Using few calibration data, the ITR of ms-LST-OA achieved 210.01±10.10 bits/min, 172.31±7.26 bits/min, and 139.04±14.90 bits/min for all three datasets, respectively. CONCLUSION: Using ms-LST-OA can reduce calibration effort for SSVEP-based BCIs.


Subject(s)
Brain-Computer Interfaces , Evoked Potentials, Visual , Humans , Calibration , Photic Stimulation/methods , Electroencephalography/methods , Algorithms
15.
Phys Med Biol ; 69(10)2024 May 08.
Article in English | MEDLINE | ID: mdl-38640918

ABSTRACT

Objective. In this experimental work we compared the determination of absorbed dose to water using four ionization chambers (ICs), a PTW-34045 Advanced Markus, a PTW-34001 Roos, an IBA-PPC05 and a PTW-30012 Farmer, irradiated under the same conditions in one continuous- and in two pulsed-scanned proton beams.Approach. The ICs were positioned at 2 cm depth in a water phantom in four square-field single-energy scanned-proton beams with nominal energies between 80 and 220 MeV and in the middle of 10 × 10 × 10 cm3dose cubes centered at 10 cm or 12.5 cm depth in water. The water-equivalent thickness (WET) of the entrance window and the effective point of measurement was considered when positioning the plane parallel (PP) ICs and the cylindrical ICs, respectively. To reduce uncertainties, all ICs were calibrated at the same primary standards laboratory. We used the beam quality (kQ) correction factors for the ICs under investigation from IAEA TRS-398, the newly calculated Monte Carlo (MC) values and the anticipated IAEA TRS-398 updated recommendations.Main results. Dose differences among the four ICs ranged between 1.5% and 3.7% using both the TRS-398 and the newly recommendedkQvalues. The spread among the chambers is reduced with the newlykQvalues. The largest differences were observed between the rest of the ICs and the IBA-PPC05 IC, obtaining lower dose with the IBA-PPC05.Significance. We provide experimental data comparing different types of chambers in different proton beam qualities. The observed dose differences between the ICs appear to be related to inconsistencies in the determination of thekQvalues. For PP ICs, MC studies account for the physical thickness of the entrance window rather than the WET. The additional energy loss that the wall material invokes is not negligible for the IBA-PPC05 and might partially explain the lowkQvalues determined for this IC. To resolve this inconsistency and to benchmark MC values,kQvalues measured using calorimetry are needed.


Subject(s)
Radiometry , Radiometry/instrumentation , Radiometry/methods , Monte Carlo Method , Proton Therapy/instrumentation , Protons , Phantoms, Imaging , Reference Standards , Uncertainty , Water , Calibration
16.
J Int Med Res ; 52(4): 3000605241240993, 2024 Apr.
Article in English | MEDLINE | ID: mdl-38606733

ABSTRACT

OBJECTIVE: We developed a simple, rapid predictive model to evaluate the prognosis of older patients with lung adenocarcinoma. METHODS: Demographic characteristics and clinical information of patients with lung adenocarcinoma aged ≥60 years were retrospectively analyzed using Surveillance, Epidemiology, and End Results (SEER) data. We built nomograms of overall survival and cancer-specific survival using Cox single-factor and multi-factor regression. We used the C-index, calibration curve, receiver operating characteristic (ROC) curves, and decision curve analysis (DCA) to evaluate performance of the nomograms. RESULTS: We included 14,117 patients, divided into a training set and validation set. We used the chi-square test to compare baseline data between groups and found no significant differences. We used Cox regression analysis to screen out independent prognostic factors affecting survival time and used these factors to construct the nomogram. The ROC curve, calibration curve, C-index, and DCA curve were used to verify the model. The final results showed that our predictive model had good predictive ability, and showed better predictive ability compared with tumor-node-metastasis (TNM) staging. We also achieved good results using data of our center for external verification. CONCLUSION: The present nomogram could accurately predict prognosis in older patients with lung adenocarcinoma.


Subject(s)
Adenocarcinoma of Lung , Lung Neoplasms , Humans , Aged , Retrospective Studies , Nomograms , Calibration , Prognosis , Neoplasm Staging
17.
Sensors (Basel) ; 24(7)2024 Mar 25.
Article in English | MEDLINE | ID: mdl-38610306

ABSTRACT

Frontal and axial knee motion can affect the accuracy of the knee extension/flexion motion measurement using a wearable goniometer. The purpose of this study was to test the hypothesis that calibrating the goniometer on an individual's body would reduce errors in knee flexion angle during gait, compared to bench calibration. Ten young adults (23.2 ± 1.3 years) were enrolled. Knee flexion angles during gait were simultaneously assessed using a wearable goniometer sensor and an optical three-dimensional motion analysis system, and the absolute error (AE) between the two methods was calculated. The mean AE across a gait cycle was 2.4° (0.5°) for the on-body calibration, and the AE was acceptable (<5°) throughout a gait cycle (range: 1.5-3.8°). The mean AE for the on-bench calibration was 4.9° (3.4°) (range: 1.9-13.6°). Statistical parametric mapping (SPM) analysis revealed that the AE of the on-body calibration was significantly smaller than that of the on-bench calibration during 67-82% of the gait cycle. The results indicated that the on-body calibration of a goniometer sensor had acceptable and better validity compared to the on-bench calibration, especially for the swing phase of gait.


Subject(s)
Optical Devices , Wearable Electronic Devices , Young Adult , Humans , Calibration , Knee Joint , Gait
18.
Vasc Health Risk Manag ; 20: 195-205, 2024.
Article in English | MEDLINE | ID: mdl-38633724

ABSTRACT

Purpose: The aim of this study was to identify independent risk factors for carotid atherosclerosis (CAS) in a population with hyperuricemia (HUA) and develop a CAS risk prediction model. Patients and Methods: This retrospective study included 3579 HUA individuals who underwent health examinations, including carotid ultrasonography, at the Zhenhai Lianhua Hospital in Ningbo, China, in 2020. All participants were randomly assigned to the training and internal validation sets in a 7:3 ratio. Multivariable logistic regression analysis was used to identify independent risk factors associated with CAS. The characteristic variables were screened using the least absolute shrinkage and selection operator combined with 10-fold cross-validation, and the resulting model was visualized by a nomogram. The discriminative ability, calibration, and clinical utility of the risk model were validated using the receiver operating characteristic curve, calibration curve, and decision curve analysis. Results: Sex, age, mean red blood cell volume, and fasting blood glucose were identified as independent risk factors for CAS in the HUA population. Age, gamma-glutamyl transpeptidase, serum creatinine, fasting blood glucose, total triiodothyronine, and direct bilirubin, were screened to construct a CAS risk prediction model. In the training and internal validation sets, the risk prediction model showed an excellent discriminative ability with the area under the curve of 0.891 and 0.901, respectively, and a high level of fit. Decision curve analysis results demonstrated that the risk prediction model could be beneficial when the threshold probabilities were 1-87% and 1-100% in the training and internal validation sets, respectively. Conclusion: We developed and internally validated a risk prediction model for CAS in a population with HUA, thereby contributing to the CAS early identification.


Subject(s)
Carotid Artery Diseases , Hyperuricemia , Humans , Blood Glucose , Retrospective Studies , Calibration
19.
Methods Mol Biol ; 2790: 333-353, 2024.
Article in English | MEDLINE | ID: mdl-38649579

ABSTRACT

This chapter provides a methodology for evaluating plant health and leaf characteristics using spectral reflectance. It provides a step-by-step guide to using spectrometers for high-resolution point measurements of leaf spectral reflectance and multispectral imaging for capturing spatial data, emphasizing the importance of consistent measurement conditions. The chapter further explores the intricacies of multispectral imaging, including calibration, data collection, and image processing. Finally, this chapter delves into the application of various spectral indices for the quantification of key traits such as pigment content, the status of the xanthophyll cycle, water content, and how to identify spectral regions of interest for further research and development. Serving as a guide for researchers and practitioners in plant science, this chapter provides a straightforward framework for plant health assessment using spectral reflectance.


Subject(s)
Plant Leaves , Spectrum Analysis , Plant Leaves/chemistry , Spectrum Analysis/methods , Image Processing, Computer-Assisted/methods , Water/chemistry , Calibration , Plants , Xanthophylls
20.
Methods Mol Biol ; 2788: 49-66, 2024.
Article in English | MEDLINE | ID: mdl-38656508

ABSTRACT

Calibrated size exclusion chromatography (SEC) is a useful tool for the analysis of molecular dimensions of polysaccharides. The calibration takes place with a set of narrow distributed dextran standards and peak position technique. Adapted columns systems and dissolving processes enable for the adequate separation of carbohydrate polymers. Plant-extracted fructan (a homopolymer with low molar mass and excellent water solubility) and mucilage (differently structured, high molar mass heteropolysaccarides that include existing supramolecular structures, and require a long dissolving time) are presented as examples of the versatility of this technique. Since narrow standards similar to the samples (chemically and structurally) are often unavailable, it must be noted that the obtained molar mass values and distributions by this method are only apparent (relative) values, expressed as dextran equivalents.


Subject(s)
Chromatography, Gel , Molecular Weight , Polysaccharides , Chromatography, Gel/methods , Polysaccharides/chemistry , Polysaccharides/analysis , Dextrans/chemistry , Fructans/chemistry , Fructans/analysis , Calibration
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