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1.
Arch Microbiol ; 206(6): 256, 2024 May 11.
Article in English | MEDLINE | ID: mdl-38734826

ABSTRACT

A novel actinobacterium strain, designated HUAS 2-6 T, was isolated from the rhizosphere soil of Camellia oleifera Abel collected from Taoyuan County, Northwestern Hunan Province, South China. This strain was subjected to a polyphasic taxonomic study. Strain HUAS 2-6 T is characterized by morphology typical of members of the genus Streptomyces, with deep purplish vinaceous aerial mycelia and deep dull lavender substrate mycelia. Strain HUAS 2-6 T, based on the full-length 16S rRNA gene sequence analysis, exhibited the highest similarities to S. puniciscabiei S77T (99.31%), S. filipinensis NBRC 12860 T (99.10%), S. yaanensis CGMCC 4.7035 T (99.09%), S. fodineus TW1S1T (99.08%), S. broussonetiae CICC 24819 T (98.76%), S. achromogenes JCM 4121 T (98.69%), S. barringtoniae JA03T (98.69%), and less than 98.70% with other validly species. In phylogenomic tree, strain HUAS 2-6 T was clustered together with S. broussonetiae CICC 24819 T, suggesting that they were closely related to each other. However, average nucleotide identity (ANI) and digital DNA-DNA hybridisation (dDDH) between them were much less than the species cutoff values (ANI 96.7% and dDDH 70%). Moreover, in phenotypic and chemotaxonomic characteristics, strain HUAS 2-6 T is distinct from S. broussonetiae CICC 24819 T. On the basis of the polyphasic data, strain HUAS 2-6 T is proposed to represent a novel species, Streptomyces camelliae sp. nov. (= MCCC 1K04729T = JCM 35918 T).


Subject(s)
Camellia , DNA, Bacterial , Phylogeny , RNA, Ribosomal, 16S , Rhizosphere , Soil Microbiology , Streptomyces , Streptomyces/isolation & purification , Streptomyces/genetics , Streptomyces/classification , Camellia/microbiology , RNA, Ribosomal, 16S/genetics , DNA, Bacterial/genetics , China , Fatty Acids/analysis , Bacterial Typing Techniques , Sequence Analysis, DNA , Base Composition
2.
BMC Ecol Evol ; 24(1): 62, 2024 May 13.
Article in English | MEDLINE | ID: mdl-38735962

ABSTRACT

The epiphytic and endophytic bacteria play an important role in the healthy growth of plants. Both plant species and growth environmental influence the bacterial population diversity, yet it is inconclusive whether it is the former or the latter that has a greater impact. To explore the communities of the epiphytic and endophytic microbes in Camellia oleifera, this study assessed three representative C. oleifera cultivars from three areas in Hunan, China by Illumina high-throughput sequencing. The results showed that the diversity and species richness of endophytic microbial community in leaves were significantly higher than those of microbial community in the epiphytic. The diversity and species richness of epiphytic and endophytic microbes are complex when the same cultivar was grown in different areas. The C. oleifera cultivars grown in Youxian had the highest diversity of epiphytic microbial community, but the lowest abundance, while the cultivars grown in Changsha had the highest diversity and species richness of endophytic microbes in leaves. It was concluded that the dominant phylum mainly included Proteobacteria, Actinobacteriota and Firmicutes through the analysis of the epiphytic and endophytic microbial communities of C. oleifera. The species and relative abundances of epiphytic and endophytic microbial community were extremely different at the genus level. The analysis of NMDS map and PERMANOVA shows that the species richness and diversity of microbial communities in epiphytes are greatly influenced by region. However, the community structure of endophytic microorganisms in leaves is influenced by region and cultivated varieties, but the influence of cultivars is more significant. Molecular ecological network analysis showed that the symbiotic interaction of epiphytic microbial community was more complex.


Subject(s)
Bacteria , Camellia , Endophytes , Microbiota , Plant Leaves , Camellia/microbiology , Endophytes/physiology , Endophytes/genetics , Endophytes/isolation & purification , Bacteria/classification , Bacteria/isolation & purification , Bacteria/genetics , China , Plant Leaves/microbiology , Biodiversity
3.
Int J Mol Sci ; 23(1)2022 Jan 04.
Article in English | MEDLINE | ID: mdl-35008957

ABSTRACT

Camellia oleifera (Ca. oleifera) is a woody tree species cultivated for the production of edible oil from its seed. The growth and yield of tea-oil trees are severely affected by anthracnose (caused by Colletotrichum gloeosporioides). In this study, the transcriptomic and metabolomic analyses were performed to detect the key transcripts and metabolites associated with differences in the susceptibility between anthracnose-resistant (ChangLin150) and susceptible (ChangLin102) varieties of Ca. oleifera. In total, 5001 differentially expressed genes (DEGs) were obtained, of which 479 DEGs were common between the susceptible and resistant varieties and further analyzed. KEGG enrichment analysis showed that these DEGs were significantly enriched in tyrosine metabolism, phenylpropanoid biosynthesis, flavonoid biosynthesis and isoquinoline alkaloid biosynthesis pathways. Furthermore, 68 differentially accumulated metabolites (DAMs) were detected, including flavonoids, such as epicatechin, phenethyl caffeate and procyanidin B2. Comparison of the DEGs and DAMs revealed that epicatechin, procyanidin B2 and arachidonic acid (peroxide free) are potentially important. The expression patterns of genes involved in flavonoid biosynthesis were confirmed by qRT-PCR. These results suggested that flavonoid biosynthesis might play an important role in the fight against anthracnose. This study provides valuable molecular information about the response of Ca. oleifera to Co. gloeosporioides infection and will aid the selection of resistant varieties using marker-assisted breeding.


Subject(s)
Camellia/genetics , Camellia/metabolism , Disease Resistance , Energy Metabolism , Gene Expression Regulation, Plant , Metabolome , Transcriptome , Camellia/microbiology , Computational Biology/methods , Disease Resistance/genetics , Disease Resistance/immunology , Gene Expression Profiling , Host-Pathogen Interactions/genetics , Host-Pathogen Interactions/immunology , Metabolomics , Phenotype , Phytochemicals/biosynthesis , Plant Diseases/genetics , Plant Diseases/microbiology , Reproducibility of Results
4.
Can J Microbiol ; 67(5): 349-357, 2021 May.
Article in English | MEDLINE | ID: mdl-33769090

ABSTRACT

Arbuscular mycorrhizal (AM) fungi play an important role in the acquisition of phosphorus (P) by plants. The external hyphae of AM fungi function as an extension of plant roots and may downregulate related functions in the roots. It is not clear whether the ability of AM fungi to mineralize organic P affects root phosphatase activities. A pot experiment was conducted to investigate the effect of Funneliformis mosseae on soil organic P mineralization under phytate application and to explore root phosphatase activities, P uptake, and growth in Camellia oleifera Abel. The plants and their growth substrates were harvested 4 and 8 months after planting. The results showed that organic P application had no effect on the total dry mass of nonmycorrhizal plants, but differences in dry mass under P application were observed in mycorrhizal plants in both harvests. Inoculation with F. mosseae increased soil acid phosphatase, phytase, and alkaline phosphatase activities and reduced the soil organic P content. Mycorrhizal plants had higher root activity, shoot and root P contents and root acid phosphatase and phytase activities than nonmycorrhizal plants irrespective of organic P application. In conclusion, AM fungi enhanced the mineralization of soil organic P and positively affect root phosphatase activities.


Subject(s)
Camellia/metabolism , Camellia/microbiology , Fungi/enzymology , Organophosphates/analysis , Phosphorus/analysis , Soil Microbiology , Camellia/growth & development , Host Microbial Interactions , Mycorrhizae/enzymology , Organophosphates/metabolism , Phosphorus/metabolism , Plant Roots/microbiology , Soil/chemistry , Symbiosis
5.
J Biotechnol ; 323: 42-53, 2020 Nov 10.
Article in English | MEDLINE | ID: mdl-32739396

ABSTRACT

Food contamination caused by microorganisms has become a threat to consumers' health. Exploring antagonistic endophytes from plants of food raw-material and applying bioactive metabolites to inhibit the contamination has been an alternative and safer solution. In this study, we isolated and screened potential antagonistic endophytes from fresh Camellia assamica leaves, which were widely used in tea beverage production. We focused on a strain that showed visible inhibitory activity to Gram-positive bacteria, Gram-negative bacteria, and fungi. It was identified as a member of Bacillus velezensis and named FZ06. The results of genome analysis showed the strain FZ06 had 167 single-copy specific genes, much higher than those of most related strains. Also, 11 potential gene clusters of antimicrobial metabolites were found. Three groups of lipopeptides (surfactin, iturin, and fengycin) were identified by UPLC-MS/MS in purified antimicrobial methanol fraction of strain FZ06. The results of minimum inhibitory concentration (MIC) test proved the lipopeptide extract showed significant inhibitory effect on food spoilage bacteria (MIC 512-2048 µg/mL) and toxigenic fungi (MIC 128-256 µg/mL). In conclusion, this study suggests that the endophytic B. velezensis FZ06 and its lipopeptide extract hold great potential applications in the inhibition of food spoilage bacteria and toxic fungi in food industry.


Subject(s)
Bacillus/metabolism , Bioprospecting/methods , Camellia/microbiology , Food Microbiology , Lipopeptides/metabolism , Plant Leaves/metabolism , Anti-Infective Agents , Bacillus/isolation & purification , Bacteria , Biological Control Agents/metabolism , Endophytes , Fungi , Genome, Bacterial , Peptides, Cyclic , Secondary Metabolism
6.
Environ Microbiol ; 22(11): 4545-4556, 2020 11.
Article in English | MEDLINE | ID: mdl-32656968

ABSTRACT

Agricultural production is dependent on inputs of nitrogen (N) whose cycle relies on soil and crop microbiomes. Crop diversification has increased productivity; however, its impact on the expression of microbial genes involved in N-cycling pathways remains unknown. Here, we assessed N-cycling gene expression patterns in the root and rhizosphere microbiomes of five oilseed crops as influenced by three 2-year crop rotations. The first phase consisted of fallow, lentil or wheat, and the second phase consisted of one of five oilseed crops. Expression of bacterial amoA, nirK and nirS genes showed that the microbiome of Ethiopian mustard had the lowest and that of camelina the highest potential for N loss. A preceding rotation phase of lentil significantly increased the expression of nifH gene by 23% compared with wheat and improved nxrA gene expression by 51% with chemical fallow in the following oilseed crops respectively. Lentil substantially increased biological N2 fixation and reduced denitrification in the following oilseed crops. Our results also revealed that most N-cycling gene transcripts are more abundant in the microbiomes associated with roots than with the rhizosphere. The outcome of our investigation brings a new level of understanding on how crop diversification and rotation sequences are related to N-cycling in annual cropping systems.


Subject(s)
Camellia/metabolism , Crops, Agricultural/microbiology , Lens Plant/metabolism , Mustard Plant/metabolism , Nitrogen Cycle/physiology , Triticum/metabolism , Agriculture/methods , Bacteria/genetics , Camellia/microbiology , Crop Production/methods , Lens Plant/microbiology , Microbiota/physiology , Mustard Plant/microbiology , Nitrogen/metabolism , Nitrogen Cycle/genetics , Plant Roots/microbiology , Rhizosphere , Soil , Soil Microbiology , Triticum/microbiology
7.
PLoS One ; 15(4): e0232096, 2020.
Article in English | MEDLINE | ID: mdl-32339210

ABSTRACT

Endophytic bacteria, which are common in plant tissues, may help to control plant pathogens and enhance plant growth. Camellia oleifera, an oil-producing plant, is widely grown in warm, subtropical, hilly regions in China. However, C. oleifera is strongly negatively affected by C. oleifera anthracnose, which is caused by Colletetrichum fructicola. To find a suitable biocontrol agent for C. oleifera anthracnose, 41 endophytes were isolated from the stems, leaves, and roots of C. oleifera. Bacterial cultures were identified based on analyses of 16S rDNA sequences; most strains belonged to the genus Bacillus. The antagonistic effects of these strains on C. fructicola were tested in vitro. In total, 16 strains inhibited C. fructicola growth, with B. subtilis strain 1-L-29 being the most efficient. Strain 1-L-29 demonstrated antagonistic activity against C. siamense, C. asianum, Fusarium proliferatum, Agaricodochium camellia, and Pseudomonas syringae. In addition, this strain produced indole acetic acid, solubilized phosphate, grew on N-free media, and produced siderophores. To facilitate further microecological studies of this strain, a rifampicin-resistant, green fluorescent protein (GFP)-labeled strain, 1-L-29gfpr, was created using protoplast transformation. This plasmid had good segregational stability. Strain 1-L-29gfpr was re-introduced into C. oleifera and successfully colonized root, stem, and leaf tissues. This strain remained at a stable concentration in the root more than 20 d after inoculation. Fluorescence microscopic analysis showed that strain 1-L-29gfpr thoroughly colonized the root surfaces of C. fructicola as well as the root vascular tissues of Arabidopsis thaliana.


Subject(s)
Anti-Bacterial Agents/metabolism , Bacillus subtilis/metabolism , Camellia/growth & development , Endophytes/metabolism , Plant Diseases/prevention & control , Plant Roots/growth & development , Bacillus subtilis/classification , Bacillus subtilis/growth & development , Bacillus subtilis/isolation & purification , Camellia/metabolism , Camellia/microbiology , Endophytes/growth & development , Endophytes/isolation & purification , Pest Control, Biological , Plant Development , Plant Diseases/microbiology , Plant Roots/metabolism , Plant Roots/microbiology
8.
Mol Plant Microbe Interact ; 33(7): 982-995, 2020 Jul.
Article in English | MEDLINE | ID: mdl-32223579

ABSTRACT

The family Sclerotiniaceae includes important phytopathogens, such as Botrytis cinerea and Sclerotinia sclerotiorum, that activate plant immune responses to facilitate infection propagation. The mechanisms of plant resistance to these necrotrophic pathogens are still poorly understood. To discover mechanisms of resistance, we used the Ciborinia camelliae (Sclerotiniaceae)-Camellia spp. pathosystem. This fungus induces rapid infection of the blooms of susceptible cultivar Nicky Crisp (Camellia japonica × Camellia pitardii var. pitardii), while Camellia lutchuensis is highly resistant. Genome-wide analysis of gene expression in resistant plants revealed fast modulation of host transcriptional activity 6 h after ascospore inoculation. Ascospores induced the same defense pathways in the susceptible Camellia cultivar but much delayed and coinciding with disease development. We next tested the hypothesis that differences in defense timing influences disease outcome. We induced early defense in the susceptible cultivar using methyl jasmonate and this strongly reduced disease development. Conversely, delaying the response in the resistant species, by infecting it with actively growing fungal mycelium, increased susceptibility. The same plant defense pathways, therefore, contribute to both resistance and susceptibility, suggesting that defense timing is a critical factor in plant health, and resistance against necrotrophic pathogens may occur during the initial biotrophy-like stages.


Subject(s)
Ascomycota/pathogenicity , Camellia/genetics , Disease Resistance/genetics , Flowers/microbiology , Plant Diseases/genetics , Plant Immunity , Acetates , Camellia/microbiology , Cyclopentanes , Gene Expression Regulation, Plant , Oxylipins , Plant Diseases/microbiology , Time Factors
9.
BMC Genet ; 20(1): 94, 2019 12 05.
Article in English | MEDLINE | ID: mdl-31805867

ABSTRACT

BACKGROUND: Tea-oil tree (Camellia oleifera) is a unique edible-oil tree in China, and anthracnose occurs in wherever it is cultivated, causing great economic losses each year. We have previously identified the Ascomycete fungus Colletotrichum fructicola as the major pathogen of anthracnose in Ca. oleifera. The purpose of this study was to characterize the biological function of Snf1 protein, a key component of the AMPK (AMP-activated protein kinase) pathway, for the molecular pathogenic-mechanisms of C. fructicola. RESULTS: We characterized CfSnf1 as the homolog of Saccharomyces cerevisiae Snf1. Targeted CfSNF1 gene deletion revealed that CfSnf1 is involved in the utilization of specific carbon sources, conidiation, and stress responses. We further found that the ΔCfSnf1 mutant was not pathogenic to Ca. oleifera, resulting from its defect in appressorium formation. In addition, we provided evidence showing crosstalk between the AMPK and the cAMP/PKA pathways for the first time in filamentous fungi. CONCLUSION: This study indicate that CfSnf1 is a critical factor in the development and pathogenicity of C. fructicola and, therefore, a potential fungicide target for anthracnose control.


Subject(s)
Camellia/microbiology , Colletotrichum/pathogenicity , Protein Serine-Threonine Kinases/genetics , Carbon/metabolism , Colletotrichum/genetics , Colletotrichum/metabolism , Cytoplasm/metabolism , Fungal Proteins/genetics , Fungal Proteins/metabolism , Gene Deletion , Phylogeny , Plant Diseases/microbiology , Protein Serine-Threonine Kinases/metabolism , Spores, Fungal/metabolism , Stress, Physiological
10.
World J Microbiol Biotechnol ; 35(7): 113, 2019 Jul 09.
Article in English | MEDLINE | ID: mdl-31289918

ABSTRACT

Camellia taliensis (W. W. Smith) Melchior is a wild tea plant endemic from the west and southwest of Yunnan province of China to the north of Myanmar and is used commonly to produce tea by the local people of its growing areas. Its chemical constituents are closely related to those of C. sinensis var. assamica, a widely cultivated tea plant. In this study, the α diversity and phylogeny of endophytic fungi in the branches of C. taliensis were explored for the first time. A total of 160 fungal strains were obtained and grouped into 42 species from 29 genera, which were identified based on rDNA internal transcribed spacer sequence analysis. Diversity analysis showed that the endophytic fungal community of the branches of C. taliensis had high species richness S (42), Margalef index D' (8.0785), Shannon-Wiener index H' (2.8494), Simpson diversity index DS (0.8891), PIE index (0.8947) and evenness Pielou index J (0.7623) but a low dominant index λ (0.1109). By contrast, that in the branches of C. taliensis had abundant species and high species evenness. Diaporthe tectonigena, Acrocalymma sp. and Colletotrichum magnisporum were the dominant endophytic fungi. The phylogenetic tree was established by maximum parsimony analysis, and the 11 orders observed for endophytic fungi belonging to Ascomycota and Basidiomycota were grouped into 4 classes.


Subject(s)
Camellia/microbiology , Endophytes/classification , Endophytes/isolation & purification , Fungi/classification , Fungi/isolation & purification , Phylogeny , Tea , Ascomycota/classification , Ascomycota/genetics , Ascomycota/isolation & purification , Basidiomycota/classification , Basidiomycota/genetics , Basidiomycota/isolation & purification , Biodiversity , China , Cluster Analysis , DNA, Ribosomal/genetics , Endophytes/genetics , Fungi/genetics , Myanmar , Sequence Analysis
11.
Molecules ; 24(11)2019 May 29.
Article in English | MEDLINE | ID: mdl-31146421

ABSTRACT

Camellia oleifera is an important Chinese commercial crop. Camellia oleifera can display abnormal leaves due to infection by the parasitic fungus Exobasidium gracile. Exobasidium gracile was isolated from infected leaves and used in fermentation, and exopolysaccharides EP0-1 and EP0.5-1 were purified from the fermentation broth. EP0-1 was an alkaline polysaccharide consisting mainly of the linkages α-d-Manp(1→, →2)-α-d-Manp(1→ and →6)-α-d-Manp(1→, →3)-α-d-Glcp(1→ and→4)-α-d-Glcp(1→, terminal ß-d-Galf, (1→5)-ß-d-Galf, and terminal ß-D-GlcN(1→. EP0.5-1 was an acidic galactofuranose-containing polysaccharide. It contained the linkages of α-d-Manp(1→, →2)-α-d-Manp(1→, →6)-α-d-Manp(1→,→2, 6)-α-d-Manp(1→, →4)-α-d-Glcp(1→, and →4)-α-d-GlcUA(1→. Galactofuranose linkages were composed of terminal ß-d-Galf, (1→6)-ß-d-Galf and (1→2)-ß-d-Galf. Exobasidium gracile exopolysaccharides displayed significant immunoregulatory activity by activating macrophages. This research indicates that infected leaves from Camellia oleifera including the exopolysaccharides produced by the parasitic fungus Exobasidium gracile by are worth further investigation as a functional product.


Subject(s)
Basidiomycota , Camellia/chemistry , Camellia/microbiology , Plant Extracts/chemistry , Plant Extracts/pharmacology , Polysaccharides/chemistry , Polysaccharides/pharmacology , Basidiomycota/chemistry , Basidiomycota/physiology , Chemical Phenomena , Fermentation , Fungal Polysaccharides/chemistry , Fungal Polysaccharides/isolation & purification , Fungal Polysaccharides/pharmacology , Macrophages/immunology , Macrophages/metabolism , Magnetic Resonance Spectroscopy , Methylation , Plant Diseases/microbiology , Reactive Oxygen Species/metabolism , Spectroscopy, Fourier Transform Infrared , Uronic Acids/metabolism
12.
Comput Biol Chem ; 79: 1-5, 2019 Apr.
Article in English | MEDLINE | ID: mdl-30684864

ABSTRACT

Bacillus megaterium strain JX285, isolated from rhizosphere red soil sample, can solubilize inorganic phosphorus, which increases the amount of available phosphorus and promotes plant growth. To investigate the mechanisms underlying phosphate solubilization, we sequenced the entire genome of B. megaterium strain JX285 (CGMCC 1.1621), which comprises a circular chromosome of 5,066,463 bp and seven plasmids of 167,030, 128,297, 60,905, 134,795, 9,598, 37,455, and 6332 bp, respectively. The whole genome sequence includes 5948 protein-coding genes, 124 tRNAs, and 29 rRNAs, and has been deposited at Genbank/EMBL/DDBJ with accession numbers CP018874-CP018881. We detected genes associated with organic acid production, which may be vital for phosphate conversion. Furthermore, phosphatase-encoding genes were also detected. The information embedded in the genome will assist in studying the mechanisms of phosphate solubilization. In conclusion, analysis of the JX285 genome will further our knowledge regarding this strain and may contribute to its biotechnological application.


Subject(s)
Bacillus megaterium/genetics , Bacillus megaterium/isolation & purification , Camellia/microbiology , Camellia/growth & development
13.
FEMS Microbiol Lett ; 365(7)2018 04 01.
Article in English | MEDLINE | ID: mdl-29471392

ABSTRACT

The saponins, as components of tea seed meal, are undesirable hemolytic components and should be degraded for reducing their hemolytic activity in order to be used in animal feed. In this study, ß-glucuronidase was verified to be a potent hydrolase of tea seed saponins to reduce their hemolytic activity and a ß-glucuronidase-producing Lactobacillus crustorum strain was screened from raw bovine milk. Next, solid-state fermentation with the isolated L. crustorum and a Bacillus subtilis natto strain, which can produce cellulase and hence improve the fermentation performance of tea seed meal, was carried out for detoxification of tea seed meal. The 50% hemolytic dosage (HD50) value of tea seed saponins was increased from 6.69 to 27.43 µg mL-1. The results of LC-MS analysis showed that the percentage of saponin aglycones increased from 30.95 to 84.25% after the fermentation. According to the roles of sugar moieties in hemolytic activity, and the enzymatic hydrolysis characteristics of ß-glucuronidase, the degradation of tea seed saponins from glucosides to aglycones may contribute to the reduction of hemolytic activity. Therefore, tea seed meal may be used as animal feed after fermentation with the tested saponin-degrading microbial strains.


Subject(s)
Bacillus subtilis/metabolism , Camellia/chemistry , Hemolytic Agents/metabolism , Lactobacillus/metabolism , Plant Extracts/metabolism , Saponins/metabolism , Seeds/microbiology , Animal Feed/analysis , Animal Feed/microbiology , Animals , Camellia/microbiology , Cattle , Chromatography, High Pressure Liquid , Fermentation , Hemolytic Agents/chemistry , Mass Spectrometry , Plant Extracts/chemistry , Saponins/chemistry , Seeds/chemistry
14.
Methods Mol Biol ; 1616: 121-136, 2017.
Article in English | MEDLINE | ID: mdl-28600765

ABSTRACT

The use of oligonucleotide-coupled fluorescent microspheres is a rapid, sequencing-independent, and reliable way to diagnose bacterial diseases. Previously described applications of oligonucleotide-coupled fluorescent microspheres for the detection and identification of bacteria in human clinical samples have been successfully adapted to detect and differentiate "Ca. Phytoplasma" species using as a target the chaperonin 60-encoding gene. In this chapter, we describe in detail the design and validation of oligonucleotide capture probes, and their application in the assay aiming to differentiate phytoplasma strains infecting Brassica napus and Camelina sativa plants grown in the same geographic location at the same time.


Subject(s)
In Situ Hybridization/methods , Oligonucleotide Probes , Phytoplasma/genetics , Plant Diseases/microbiology , Brassica napus/genetics , Brassica napus/microbiology , Camellia/genetics , Camellia/microbiology , Chaperonin 60/genetics , DNA, Plant , Fluorescence , Host-Pathogen Interactions , In Situ Hybridization/instrumentation , Microspheres , Oligonucleotide Probes/genetics , Phytoplasma/pathogenicity , Polymerase Chain Reaction
15.
Sci Rep ; 7(1): 866, 2017 04 13.
Article in English | MEDLINE | ID: mdl-28408743

ABSTRACT

A total of 124 Pestalotiopsis-like isolates associated with symptomatic and asymptomatic tissues of Camellia sinensis and other Camellia spp. from eight provinces in China were investigated. Based on single- and multi-locus (ITS, TEF, TUB2) phylogenies, as well as morphological characters, host associations and geographical distributions, they were classified into at least 19 species in three genera, i.e. Neopestalotiopsis, Pestalotiopsis and Pseudopestalotiopsis. Eight novel species in Pestalotiopsis and three novel species in Pseudopestalotiopsis were described. Our data suggested that the currently widely used loci in Pestalotiopsis-like genera do not consistently provide stable and sufficient resolution tree topologies, especially for Neopestalotiopsis. Moreover, the number, branch pattern and length of the conidial basal appendages were revealed to be phylogenetically informative characters in Pestalotiopsis.


Subject(s)
Camellia/microbiology , Saccharomycetales/classification , Saccharomycetales/isolation & purification , Sequence Analysis, DNA/methods , China , DNA, Fungal/genetics , Phylogeny , Saccharomycetales/genetics
16.
Int J Syst Evol Microbiol ; 66(10): 4185-4190, 2016 Oct.
Article in English | MEDLINE | ID: mdl-27469334

ABSTRACT

A novel bacterium, designated strain CF1T, was isolated from a soil sample of a tea plantation and its taxonomic position was determined using a polyphasic approach. Strain CF1T was a Gram-stain-negative, facultatively anaerobic, non-sporulating, non-motile and rod-shaped bacterium. Optimum growth occurred at 25 °C and pH 6.0. Comparative analysis of the 16S rRNA gene sequence showed that the isolate belongs to the genus Paraburkholderia, showing highest levels of similarity with respect to Paraburkholderia sediminicola LMG 24238T (98.44 %). Additionally, strain CF1T, P. sediminicola LMG 24238T and Paraburkholderia aspalathi LMG 27731 formed a distinct group in the phylogenetic tree based on 16S rRNA gene sequences. The predominant ubiquinone was Q-8, and the polar lipid profile consisted of a mixture of phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, one unidentified aminophospholipid, two unidentified aminolipids and two unidentified polar lipids. The DNA G+C content was 60.2 mol%, and the major fatty acids were C16 : 0, summed feature 8 (C18 : 1ω7c and/or C18 : 1ω6c) and summed feature 3 (C16 : 1ω7c and/or C16 : 1ω6c). The DNA-DNA relatedness values between strain CF1T and its close relatives including P. sediminicola LMG 24238T and P. aspalathi LMG 27731 49.3±0.4 % and 38.3±0.5 %, respectively. On the basis of phylogenetic analysis, phenotypic and genotypic data, it is concluded that the isolate represents a novel species of the genus Paraburkholderia, for which the name Paraburkholderia caffeinilytica sp. nov. is proposed. The type strain is CF1T (=LMG 28690T=CGMCC 1.15103T).


Subject(s)
Camellia/microbiology , Phylogeny , Soil Microbiology , Bacterial Typing Techniques , Base Composition , China , DNA, Bacterial/genetics , Fatty Acids/chemistry , Nucleic Acid Hybridization , Phospholipids/chemistry , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA , Ubiquinone/chemistry
17.
PLoS One ; 11(6): e0156841, 2016.
Article in English | MEDLINE | ID: mdl-27299731

ABSTRACT

The filamentous fungus Colletotrichum fructicola is found in all five continents and is capable of causing severe diseases in a number of economically important plants such as avocado, fig, cocoa, pear, and tea-oil trees. However, almost nothing is known about its patterns of genetic variation and epidemiology on any of its host plant species. Here we analyzed 167 isolates of C. fructicola obtained from the leaves of tea-oil tree Camellia oleifera at 15 plantations in seven Chinese provinces. Multilocus sequence typing was conducted for all isolates based on DNA sequences at fragments of four genes: the internal transcribed spacers of the nuclear ribosomal RNA gene cluster (539 bp), calmodulin (633 bp), glutamine synthetase (711 bp), and glyceraldehyde-3-phosphate dehydrogenase (190 bp), yielding 3.52%, 0.63%, 8.44%, and 7.89% of single nucleotide polymorphic sites and resulting in 15, 5, 12 and 11 alleles respectively at the four gene fragments in the total sample. The combined allelic information from all four loci identified 53 multilocus genotypes with the most frequent represented by 21 isolates distributed in eight tea-oil plantations in three provinces, consistent with long-distance clonal dispersal. However, despite evidence for clonal dispersal, statistically significant genetic differentiation among geographic populations was detected. In addition, while no evidence of recombination was found within any of the four gene fragments, signatures of recombination were found among the four gene fragments in most geographic populations, consistent with sexual mating of this species in nature. Our study provides the first insights into the population genetics and epidemiology of the important plant fungal pathogen C. fructicola.


Subject(s)
Camellia/microbiology , Colletotrichum/genetics , Colletotrichum/isolation & purification , Genetic Variation , Plant Diseases/microbiology , Trees/microbiology , China , DNA, Fungal/genetics , DNA, Fungal/isolation & purification , Genetics, Population , Genotype , Multilocus Sequence Typing , Phylogeny , RNA, Fungal/genetics , RNA, Fungal/isolation & purification , RNA, Ribosomal/genetics , RNA, Ribosomal/isolation & purification
18.
Mycorrhiza ; 25(4): 253-65, 2015 May.
Article in English | MEDLINE | ID: mdl-25253200

ABSTRACT

Camellia japonica L. is an acidophilic ornamental shrub of high economic value that has its center of origin in Japan and has been introduced in several European environmental niches. This exotic species forms arbuscular mycorrhizas (AM), known for their ability to positively affect plant growth. However, AM fungal communities associated to C. japonica in the field have never been characterized. For the first time, the AM fungal community naturally selected by C. japonica was screened in three sites located on the shores of Lake Maggiore (Italy), where specimens of this plant were introduced in the nineteenth century. Mycorrhizal levels were assessed, and the AM fungal communities associated to roots and soil were molecularly characterized based on the small subunit (SSU) rDNA region. The frequency of mycorrhizal roots was high in all sampled root systems (>90 %). Overall, 39 Operational Taxonomic Units (OTUs; 22 Glomerales, 9 Paraglomerales, 7 Archaeosporales, and 1 Diversisporales) were found in the root and soil samples. OTU richness did not significantly differ between the root and the soil niche (5.7 ± 0.6 and 8.0 ± 1.1 average OTUs per sample, respectively) and the three sites analyzed (7.5 ± 0.7, 5.2 ± 1.0, and 7.8 ± 1.5 average OTUs per sample in the three sites, respectively). The AM fungal community composition significantly differed between root-colonizing and soil-dwelling communities and among the three sites under study. Data show a major involvement of edaphic factors, such as available N sources, P, Mg, and K content in soil and soil compaction, in the structuring of the AM fungal communities.


Subject(s)
Biodiversity , Camellia/microbiology , Environment , Mycorrhizae/classification , Mycorrhizae/physiology , Cluster Analysis , Computational Biology , Gene Library , Italy , Phylogeny , Plant Roots/microbiology , RNA, Ribosomal/genetics , Sequence Analysis, DNA , Soil/chemistry , Soil Microbiology
19.
World J Microbiol Biotechnol ; 30(6): 1775-84, 2014 Jun.
Article in English | MEDLINE | ID: mdl-24442818

ABSTRACT

Endophytic fungi play an important role in terrestrial ecosystem, while little is known about those in hemi-parasitic plants, a group of special plants which absorb nutrients from its hosts by haustoria. The relationship of the endophytes in the two parts of the bipartite systems (hemiparasites together with their hosts) is also poorly understood. Endophytic fungi of a hemi-parasitic plant Macrosolen tricolor, and its host plant Camellia oleifera were investigated and compared in this study. M. tricolor contained rich and diversified endophytic fungi (H' = 2.829), which consisted mainly of ascomycetes, distributed in more than ten orders of four classes (Sordariomycetes, Dothideomycetes, Leotiomycetes and Eurotiomycetes) besides Incertae sedis strains (23.2 % of total). In addition, 2.2 % of isolates were identified to be Basidiomycota, all of which belonged to Agaricomycetes. Obvious differences were observed between the endophytic fungal assembles in the leaves and those in the branches of M. tricolor. The endophytic fungi isolated from C. oleifera distributed in nearly same orders of the four classes of Ascomycota and one class (Agaricomycetes) of Basidiomycota as those from M. tricolor with similar proportion. For both M. tricolor and C. oleifera, Valsa sp. was the dominant endophyte species in the leaves, Torula sp. 1 and Fusarium sp. 1 were the dominant endophytic fungi in the branches. The similarity coefficient of the endophyte assembles in the two host was 64.4 %. Canonical correspondence analysis showed that the endophyte assembles of M. tricolor and C. oleifera were significantly different (p < 0.01).


Subject(s)
Camellia/microbiology , Endophytes/isolation & purification , Fungi/isolation & purification , Loranthaceae/microbiology , Plant Weeds/microbiology , Biodiversity , Camellia/physiology , Endophytes/classification , Endophytes/genetics , Fungi/classification , Fungi/genetics , Loranthaceae/physiology , Molecular Sequence Data , Plant Weeds/physiology
20.
Food Chem ; 146: 437-42, 2014 Mar 01.
Article in English | MEDLINE | ID: mdl-24176364

ABSTRACT

This paper concentrates on the separation of three conjugated linoleic acid (CLA) isomers (trans-9,trans-11 CLA, trans-10,cis-12 CLA and cis-9,trans-11 CLA) by ß-cyclodextrin (ß-CD) encapsulation using countercurrent chromatography from Camellia oleifera Abel cake fermented by lactic acid bacteria Lactobacillus sp. LL-ZSDS001. The elution sequence of the CLA isomers, the mixing zones and mechanism of separation are discussed. The separation of 305.9mg of the crude sample yielded three isomeric compounds: 91.3mg of trans-9,trans-11 CLA, 84.1mg of trans-10,cis-12 CLA and 79.7mg of cis-9,trans-11 CLA at high purities of 98%, 94% and 96%, respectively.


Subject(s)
Camellia/chemistry , Countercurrent Distribution/methods , Lactobacillus/metabolism , Linoleic Acids, Conjugated/isolation & purification , beta-Cyclodextrins/chemistry , Camellia/metabolism , Camellia/microbiology , Countercurrent Distribution/instrumentation , Fermentation , Hydrogen-Ion Concentration , Isomerism , Linoleic Acids, Conjugated/chemistry
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