The assimilation of different carbon sources in Candida albicans: Fitness and pathogenicity.

Candida albicans is a commensal yeast commonly found on the skin and in the body. However, in immunocompromised individuals, the fungi could cause local and systemic infections. The carbon source available plays an important role in the establishment of C. albicans infections. The fungi's ability to assimilate a variety of carbon sources plays a vital role in its colonization, and by extension, its fitness and pathogenicity, as it often inhabits niches that are glucose-limited but rich in alternative carbon sources. A difference in carbon sources affect the growth and mating of C. albicans, which contributes to its pathogenicity as proliferation helps the fungi colonize its environment. The carbon source also affects its metabolism and signaling pathways, which are integral parts of the fungi's fitness and pathogenicity. As a big percentage of the carbon assimilated by C. albicans goes to cell wall biogenesis, the availability of different carbon sources will result in cell walls with variations in rigidity, adhesion, and surface hydrophobicity. In addition to the biofilm formation of the fungi, the carbon source also influences whether the fungi grow in yeast- or mycelial-form. Both forms play different roles in C. albicans's infection process. A better understanding of the role of the carbon sources in C. albicans's pathogenicity would contribute to more effective treatment solutions for fungal infections.

Erythritol production by yeasts: a snapshot of current knowledge.

Erythritol is a four-carbon sugar alcohol produced by microorganisms as an osmoprotectant. It could be used as a natural sweetener in the pharmaceutical and food industries. Here, a snapshot of current knowledge on erythritol metabolism and synthesis, optimization of its production and more precise process and producer strain improvement is presented.

A high sensitive visible light-driven photoelectrochemical aptasensor for shrimp allergen tropomyosin detection using graphitic carbon nitride-TiO2 nanocomposite.

Herein, for the first time a visible-light-driven photoelectrochemical (PEC) aptasensor for shrimp tropomyosin determination was fabricated by using graphitic carbon nitride (g-C3N4) and titanium dioxide (TiO2) as photoactive nanomaterials, ascorbic acid (AA) as electron donor and ruthenium (III) hexaammine (Ru(NH3)63+) as signal enhancer. The surface of an ITO electrode was first modified with g-C3N4, TiO2, and polyethyleneimine (PEI) and then the amine terminal aptamerTROP probe was attached to PEI by the use of glutaraldehyde (GA) as cross-linker. After that, Ru(NH3)63+ was adsorbed on aptamer to enhance the photocurrent signal. The principle of proposed PEC aptasensor is based on the formation of a selective complex between tropomyosin and immobilized aptamerTROP probe on the surface of ITO/g-C3N4-TiO2/PEI/aptamerTROP-Ru(NH3)6+3. After the incubation of tropomyosin with TROP aptamer probe, the photocurrent signal decreased due to releasing adsorbed Ru(NH3)63+ on aptamer and preventing AA from scavenging photogenerated holes to the photoactive modified electrode. Under the optimized conditions, the fabricated PEC aptasensor was used for the determination of shrimp tropomyosin in the concentration range of 1-400ngmL-1 with a limit of detection of 0.23ngmL-1. The proposed PEC aptasensor exhibited high selectivity, sensitivity, and good stability.

Blood pressure changes in association with black carbon exposure in a panel of healthy adults are independent of retinal microcirculation.

Exposure to ambient particulate matter and elevated blood pressure are risk factors for cardiovascular morbidity and mortality. Microvascular changes might be an important pathway in explaining the association between air pollution and blood pressure. The objective of the study was to evaluate the role of the retinal microcirculation in the association between black carbon (BC) exposure and blood pressure. We estimated subchronic BC exposure based on 1-week personal measurements (µ-Aethalometer, AethLabs) in 55 healthy nurses. Blood pressure and retinal microvasculature were measured on four different days (range: 2-4) during this week. Subchronic BC exposure averaged (± SD) 1334±631ng/m(3) and ranged from 338ng/m(3) to 3889ng/m(3). An increased exposure of 631ng/m(3) BC was associated with a 2.77mmHg (95% CI: 0.39 to 5.15, p=0.027) increase in systolic blood pressure, a 2.35mmHg (95% CI: 0.52 to 4.19, p=0.016) increase in diastolic blood pressure and with 5.65µm (95% CI: 1.33 to 9.96, p=0.014) increase in central retinal venular equivalent. Mediation analysis failed to reveal an effect of retinal microvasculature in the association between blood pressure and subchronic BC exposure. In conclusion, we found a positive association between blood pressure and subchronic black carbon exposure in healthy adults. This finding adds evidence to the association between black carbon exposure and cardiovascular health effects, with elevated blood pressure as a plausible intermediate effector. Our results suggest that the changes in a person's blood pressure as a result of subchronic black carbon exposure operate independently of the retinal microcirculation.

Importance of microbial soil organic matter processing in dissolved organic carbon production.

Soil dissolved organic carbon (DOC) sources and its seasonal dynamics are poorly known. We aimed to determine the contribution of plant and soil organic matter (SOM) to size classes of DOC in a field experiment with C3 to C4 vegetation change on two soil types through different seasons. Stable isotope ratios of DOC size classes were measured using size exclusion chromatography (SEC) coupled online to liquid chromatography-isotope ratio mass spectrometry (LC-IRMS). SEC resolved DOC into three size classes: very high molecular weight/vHMW (> 10 kDa), high molecular weight/HMW (0.4-10 kDa), and low molecular weight/LMW (< 0.4 kDa). HMW DOC was most abundant in all seasons, soil types, and depths. In contrast, vHMW DOC was only seen postsnowmelt in upper 20 cm and was mainly (87 ± 9%) plant-derived. Through all seasons, HMW and LMW DOC had less than 30% recent plant contribution. Similar size range and source of DOC size classes and soil chloroform fumigation extracts suggest microbial origin of DOC. Thus, microbial SOM recycling is an important process in DOC production. We suggest that DOC molecules get partitioned manifold between soil solution and the mineral matrix (chromatography), thereby getting constantly decomposed, altered, or produced anew by soil microorganisms (reactive transport).

Fuzzy similarity measures for detection and classification of defects in CFRP.

The systematic use of nondestructive testing assumes a remarkable importance where on-line manufacturing quality control is associated with the maintenance of complex equipment. For this reason, nondestructive testing and evaluation (NDT/NDE), together with accuracy and precision of measurements of the specimen, results as a strategic activity in many fields of industrial and civil interest. It is well known that nondestructive research methodologies are able to provide information on the state of a manufacturing process without compromising its integrity and functionality. Moreover, exploitation of algorithms with a low computational complexity for detecting the integrity of a specimen plays a crucial role in real-time work. In such a context, the production of carbon fiber resin epoxy (CFRP) is a complex process that is not free from defects and faults that could compromise the integrity of the manufactured specimen. Ultrasonic tests provide an effective contribution in identifying the presence of a defect. In this work, a fuzzy similarity approach is proposed with the goal of localizing and classifying defects in CFRP in terms of a sort of distance among signals (measure of ultrasonic echoes). A field-programmable gate array (FPGA)-based board will be also presented which implements the described algorithms on a hardware device. The good performance of the detection and classification achieved assures the comparability of the results with the results obtained using heuristic techniques with a higher computational load.

Organic and elemental carbon filter sets: preparation method and interlaboratory results.

Carbonaceous aerosols play an important role in climate, visibility, air quality, and human health effects, and they have been routinely monitored in workplace and environmental settings. Different thermal analysis methods have been applied to determine the carbon content of carbonaceous aerosols. Good agreement between results for total carbon (TC) generally has been found, but the organic and elemental carbon (OC and EC) fractions determined by different methods often disagree. Measurement uncertainty is mainly due to pyrolysis and charring of OC sample components. Lack of reference materials has impeded progress on method standardization and understanding method biases. A relatively simple method for generating matched filter sets having known OC-EC contents is reported. After generation and analysis of each set to confirm agreement between filters, the filter sets were distributed to six laboratories for an interlaboratory comparison. Analytical results indicate a uniform carbon distribution for the filter sets and good agreement between the participating laboratories. Relative standard deviations (RSDs) for mean TC (OC + EC), OC, and EC results for seven laboratories were <10, 11, and 12% (respectively). Except for one EC result (RSD = 16%), RSDs reported by individual laboratories for TC, OC, and EC were <12%. The method of filter generation is generally applicable and reproducible. Depending on the application, different filter loadings and types of OC materials can be employed. Matched filter sets prepared by the described approach can be used for determining the accuracy of OC-EC methods and thereby contribute to method standardization.

[Soil organic carbon fractionation methods and their applications in farmland ecosystem research: a review].

Soil organic carbon is of heterogeneity in components. The active components are sensitive to agricultural management, while the inert components play an important role in carbon fixation. Soil organic carbon fractionation mainly includes physical, chemical, and biological fractionations. Physical fractionation is to separate the organic carbon into active and inert components based on the density, particle size, and its spatial distribution; chemical fractionation is to separate the organic carbon into various components based on the solubility, hydrolizability, and chemical reactivity of organic carbon in a variety of extracting agents. In chemical fractionation, the dissolved organic carbon is bio-available, including organic acids, phenols, and carbohydrates, and the acid-hydrolyzed organic carbon can be divided into active and inert organic carbons. Simulated enzymatic oxidation by using KMnO4 can separate organic carbon into active and non-active carbon. Biological fractionation can differentiate microbial biomass carbon and potential mineralizable carbon. Under different farmland management practices, the chemical composition and pool capacity of soil organic carbon fractions will have different variations, giving different effects on soil quality. To identify the qualitative or quantitative relationships between soil organic carbon components and carbon deposition, we should strengthen the standardization study of various fractionation methods, explore the integrated application of different fractionation methods, and sum up the most appropriate organic carbon fractionation method or the appropriate combined fractionation methods for different farmland management practices.

Carbon fiber nanoelectrodes applied to microchip electrophoresis amperometric detection of neurotransmitter dopamine in rat pheochromocytoma (PC12) cells.

Microelectrodes have been adopted in electrochemical detection for CE or microchip CE in recent years. In this paper, the use of nanoelectrodes (with tip diameter of 100-300 nm) as the electrochemical detector in microchip CE is firstly reported. The experimental results indicated that both the sensitivity and resolution of microchip CE with the carbon fiber nanoelectrode (CFNE) amperometric detection have been improved markedly comparing with the traditional microelectrodes. The detection limit of dopamine (S/N = 3) is 5.9x10(-8) M, which is one or two orders of magnitude lower than that reported so far, and the resolution of dopamine (DA) and isoprenaline (IP) has also improved from 0.6 (using 7 mum carbon fiber microelectrodes, CFME) to 1.0. We assembled a novel and easily operated microchip CE system with end-column amperometric detection, which allows the convenient and fast replacement of the passivated electrodes. Under the optimized condition, the RSDs of peak height and migration time are 1.47 and 0.31%, respectively (n = 40), indicating that the system displays excellent reproducibility. The nanoelectrode-based microchip CE system has been successfully applied to the determination of DA in cultured rat pheochromocytoma (PC12) cells, and the average content of DA in an individual PC12 cell is 0.54 +/- 0.07 fmol, which is in good agreement with that reported in the literature.

Effect of different carbon sources on community composition of bacterial enrichments from soil.

Soil is a highly heterogeneous matrix, which can contain thousands of different bacterial species per gram. Only a small component of this diversity (maybe <1%) is commonly captured using standard isolation techniques, although indications are that a larger proportion of the soil community is in fact culturable. Better isolation techniques yielding greater bacterial diversity would be of benefit for understanding the metabolic activity and capability of many soil microorganisms. We studied the response of soil bacterial communities to carbon source enrichment in small matrices by means of terminal restriction fragment length polymorphism (TRFLP) analysis. The community composition of replicate enrichments from soil displayed high variability, likely attributable to soil heterogeneity. An analysis of TRFLP data indicated that enrichment on structurally similar carbon sources selected for similar bacterial communities. The same analysis indicated that communities first enriched on glucose or benzoate and subsequently transferred into medium containing an alternate carbon source retained a distinct community signature induced by the carbon source used in the primary enrichment. Enrichment on leucine presented a selective challenge that was able to override the imprint left by primary enrichment on acetate. In a time series experiment community change was most rapid 18 hours after inoculation, corresponding to exponential growth. Community composition did not stabilize even 4 days after secondary enrichment. Four different soil types were enriched on four different carbon sources. TRFLP analysis indicated that in three out of four cases communities enriched on the same carbon source were more similar regardless of which soil type was used. Conversely, the garden soil samples yielded similar enrichment communities regardless of the enrichment carbon source. Our results indicate that in order to maximize the diversity of bacteria recovered from the environment, multiple enrichments should be performed using a chemically diverse set of carbon sources.

Carbon black should not be classified as a human carcinogen based on rodent bioassay data.

Numerous epidemiology studies have failed to adequately demonstrate an increased risk of lung cancer due to occupational exposure to carbon black (CB). CB is not carcinogenic to mice (oral, skin or inhalation), hamsters (inhalation or intratracheal), guinea pigs (inhalation), rabbits (skin or inhalation), primates (skin or inhalation) or rats (oral). Only studies conducted by inhalation and intratracheal administration in rats have shown significant increases in benign and malignant lung tumors and lesions described as benign cystic keratinizing squamous-cell (KSC) tumors. CB-induced lung tumor formation, including KSC lesions, occurs only in rats. An expert panel reviewing KSC lesions (induced in rats by TiO2 or p-aramid) concluded that KSC lesions are not seen in humans. Lung tumors in humans are primarily located in the bronchial airways, whereas in the rat they occur in the parenchyma and are alveolar in origin. This species-specific response (tumor formation and KSC lesions) by the rat to CB, not seen in any other laboratory species and which has not been reported in humans, strongly suggests that the results of the rat inhalation bioassay should not be considered directly relevant when assessing human risk. Therefore, CB should not be classified as carcinogenic to humans based on the rodent bioassay data.

Atomic properties of selected biomolecules: quantum topological atom types of carbon occurring in natural amino acids and derived molecules.

We seek to recover rigorous atom types from amino acid wave functions. The atom types emerge from a cluster analysis operating on a set of seven atomic properties, including kinetic energy, volume, population, and dipole, quadrupole, octupole, and hexadecapole moments. These properties are acquired by partitioning the molecular electron density into quantum topological atoms. Wave functions are generated at the B3LYP/6-311+G(2d,p)//HF/6-31G(d) level for a sensible conformation of each of the 20 naturally occurring amino acids and smaller derived molecules, which together constitute a data set of 57 molecules. From this set 213 unique quantum topological carbons are obtained, which are linked according to the similarity of their properties. After introducing a statistical separation criterion, our cluster analysis proposes two representations: a cruder one with 5 atom types and a finer one with 21 atom types. The immediate coordination of the central carbon plays a major role in labeling the atom types.

Long term tissue response to titanium coated with diamond like carbon.

Diamond like carbon (DLC) coatings were deposited on to Ti substrates by plasma enhanced chemical vapor deposition technique. Ti and DLC/Ti samples were implanted in skeletal muscle of rabbits. The samples were explanted after 1, 3, 6 and 12 months and the tissue-cell interaction was studied. Our data indicate both DLC/Ti and bare Ti to be compatible with skeletal muscle.

Liners for waste containment constructed with class F and C fly ashes.

Hydraulic conductivity of a Class F fly ash containing residual organic carbon was evaluated in this study using laboratory and field tests. Compacted specimens of the Class F fly ash mixed with various materials (sand, Class C fly ash, and bottom ash) were prepared in the laboratory at various water contents and different compactive efforts. Hydraulic conductivity of the compacted specimens was measured using flexible-wall permeameters. A test pad was constructed to determine whether a low hydraulic conductivity liner could be constructed with Class F fly ash mixtures. Sealed double-ring infiltrometers and two-stage borehole permeameters were used to measure the field hydraulic conductivity of the test pad. Specimens were also removed from the test pad for hydraulic conductivity testing in the laboratory. Results of the study showed that mixtures of Class F and Class C fly ashes along with coarse aggregate can be compacted to hydraulic conductivities needed for landfill liners provided compaction is wet of optimum water content. The field tests showed that constructing a fly ash liner with hydraulic conductivities similar to those found in the laboratory is challenging, and requires careful attention to factors that result in cracks and permeable interlift regions that result in high field hydraulic conductivity. Leachate collected from the base of the test pad also showed that metal leaching must be considered when designing a liner with fly ash.

Detection of a new carbon-chain molecule, CCO.

We have detected a new carbon-chain molecule, CCO(3 sigma-), in the cold, dark molecular cloud TMC-1. The excitation temperature and the column density of CCO are, respectively, approximately 6 K and approximately 6 x 10(11) cm-2. This column density corresponds to a fractional abundance relative to H2 of approximately 6 x 10(-11). This value is two orders of magnitude less than the abundance of the related carbon-chain molecule CCS, and about half that of C3O. The formation mechanism for CCO is discussed.