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1.
PLoS One ; 7(10): e47844, 2012.
Article in English | MEDLINE | ID: mdl-23082223

ABSTRACT

Brown tide algal blooms, caused by the excessive growth of Aureococcus anophagefferens, recur in several northeastern US coastal bays. Direct bloom control could alleviate the ecological and economic damage associated with bloom outbreak. This paper explored the effectiveness and safety of natural chemical biocide hydrogen peroxide (H(2)O(2)) for brown tide bloom control. Culture studies showed that H(2)O(2) at 1.6 mg L(-1) effectively eradicated high density A. anophagefferens within 24-hr, but caused no significant growth inhibition in the diatoms, prymnesiophytes, green algae and dinoflagellates of >2-3 µm cell sizes among 12 phytoplankton species tested over 1-week observation. When applied to brown tide bloom prone natural seawater in a microcosm study, this treatment effectively removed the developing brown tide bloom, while the rest of phytoplankton assemblage (quantified via HPLC based marker pigment analyses), particularly the diatoms and green algae, experienced only transient suppression then recovered with total chlorophyll a exceeding that in the controls within 72-hr; cyanobacteria was not eradicated but was still reduced about 50% at 72-hr, as compared to the controls. The action of H(2)O(2) against phytoplankton as a function of cell size and cell wall structure, and a realistic scenario of H(2)O(2) application were discussed.


Subject(s)
Biota , Chrysophyta/drug effects , Chrysophyta/growth & development , Eutrophication/drug effects , Hydrogen Peroxide/pharmacology , Water Movements , Cell Size/drug effects , Cells, Cultured , Chrysophyta/cytology , Phytoplankton/cytology , Phytoplankton/drug effects , Phytoplankton/growth & development , Pigments, Biological/metabolism , Seawater
2.
BMC Bioinformatics ; 13 Suppl 17: S25, 2012.
Article in English | MEDLINE | ID: mdl-23282059

ABSTRACT

BACKGROUND: Freshwater algae can be used as indicators to monitor freshwater ecosystem condition. Algae react quickly and predictably to a broad range of pollutants. Thus they provide early signals of worsening environment. This study was carried out to develop a computer-based image processing technique to automatically detect, recognize, and identify algae genera from the divisions Bacillariophyta, Chlorophyta and Cyanobacteria in Putrajaya Lake. Literature shows that most automated analyses and identification of algae images were limited to only one type of algae. Automated identification system for tropical freshwater algae is even non-existent and this study is partly to fill this gap. RESULTS: The development of the automated freshwater algae detection system involved image preprocessing, segmentation, feature extraction and classification by using Artificial neural networks (ANN). Image preprocessing was used to improve contrast and remove noise. Image segmentation using canny edge detection algorithm was then carried out on binary image to detect the algae and its boundaries. Feature extraction process was applied to extract specific feature parameters from algae image to obtain some shape and texture features of selected algae such as shape, area, perimeter, minor and major axes, and finally Fourier spectrum with principal component analysis (PCA) was applied to extract some of algae feature texture. Artificial neural network (ANN) is used to classify algae images based on the extracted features. Feed-forward multilayer perceptron network was initialized with back propagation error algorithm, and trained with extracted database features of algae image samples. System's accuracy rate was obtained by comparing the results between the manual and automated classifying methods. The developed system was able to identify 93 images of selected freshwater algae genera from a total of 100 tested images which yielded accuracy rate of 93%. CONCLUSIONS: This study demonstrated application of automated algae recognition of five genera of freshwater algae. The result indicated that MLP is sufficient, and can be used for classification of freshwater algae. However for future studies, application of support vector machine (SVM) and radial basis function (RBF) should be considered for better classifying as the number of algae species studied increases.


Subject(s)
Chrysophyta/classification , Chrysophyta/cytology , Cyanobacteria/classification , Cyanobacteria/cytology , Diatoms/classification , Diatoms/cytology , Environmental Monitoring/methods , Image Processing, Computer-Assisted/methods , Algorithms , Fresh Water , Principal Component Analysis , Support Vector Machine
3.
Water Res ; 43(12): 2953-60, 2009 Jul.
Article in English | MEDLINE | ID: mdl-19476966

ABSTRACT

Microcystis aeruginosa has quickly risen in infamy as one of the most universal and toxic bloom-forming cyanobacteria. Here we presented a species of golden alga (Poterioochromonas sp. strain ZX1), which can feed on toxic M. aeruginosa without any adverse effects from the cyanotoxins. Using flow cytometry, the ingestion and maximal digestion rates were estimated to be 0.2 approximately 1.2 and 0.2 M. aeruginosa cells (ZX1 cell)(-1)h(-1), respectively. M. aeruginosa in densities below 10(7)cells mL(-1) could be grazed down by ZX1, but no significant decrease was observed when the initial density was 3.2 x 10(7)cells mL(-1). ZX1 grazing was a little influenced by the light intensity (0.5 approximately 2500l x) and initial pH of the medium (pH=5.0 approximately 9.5). ZX1 could not survive in continuous darkness for longer than 10 days. The pH value was adjusted to 8 by ZX1 while to 10 by M. aeruginosa. This study may shed light on understanding the ecological interactions between M. aeruginosa and mixotrophic Poterioochromonas sp. in aquatic ecosystems.


Subject(s)
Chrysophyta/growth & development , Chrysophyta/metabolism , Microcystis , Chrysophyta/cytology
4.
Protist ; 160(3): 376-85, 2009 Aug.
Article in English | MEDLINE | ID: mdl-19282238

ABSTRACT

The colorless amoeboid eukaryote genus Leukarachnion represents one of a long list of microbial lineages for which there have been few taxonomic studies. In this study, we analyze molecular data to assess the placement of a species of Leukarachnion on the eukaryotic tree of life and we report fine structural data to provide additional information on the identity of this taxon. Our multigene analyses indicate that Leukarachnion sp. (ATCC PRA-24) is a member of the stramenopiles, sister to the Chrysophyceae/Synurophyceae clade. It also forms a sister group relationship to the clade containing Chlamydomyxa labyrinthuloides and Synchroma grande, both of which are characterized by net-like amoeboid phases. Leukarachnion sp. and Chlamydomyxa labyrinthuloides also share fine structural cyst morphology such as bilayered structure of the cyst wall. The amoeboid form and heterotrophic habit of Leukarachnion sp. highlight the multiple origins of diverse body forms and multiple plastid losses within the stramenopiles.


Subject(s)
Cell Wall/ultrastructure , Chrysophyta/classification , Chrysophyta/genetics , Chrysophyta/cytology , Chrysophyta/ultrastructure , Cluster Analysis , DNA, Algal/chemistry , DNA, Algal/genetics , DNA, Ribosomal/chemistry , DNA, Ribosomal/genetics , Genes, rRNA , Microscopy , Microscopy, Electron, Transmission , Molecular Sequence Data , Phylogeny , RNA, Algal/genetics , RNA, Ribosomal, 18S/genetics , Sequence Analysis, DNA , Sequence Homology, Nucleic Acid
5.
Protoplasma ; 221(3-4): 277-88, 2003 Jun.
Article in English | MEDLINE | ID: mdl-12802635

ABSTRACT

10 nm diameter filaments were observed in whole-mount preparations of algae of diverse phyla: Acetabularia acetabulum and A. major (Chlorophyta), Chara australis and Nitella flexilis (Charophyta), and Poterioochromonas malhamensis (Chrysophyta). A polyclonal antibody raised against a basic, 50 kDa DNA-binding protein of A. acetabulum stains the filaments of A. acetabulumand and A. major as well as of C. australis and N. flexilis. While in the perinuclear region of A. acetabulumand and A. major and throughout the cytoplasm of P. malhamensis the 10 nm filaments have a smooth appearance, in the stalk of A. acetabulumand and A. major they are densely covered by globular structures; in C. australis and N. flexilis they are less frequently associated with such material. The morphology of a part of the globular particles is quite reminiscent of prosomes. A monoclonal antibody elicited against prosomes isolated from A. acetabulum indeed decorates the globular particles on the A. acetabulum and A. major filaments. The possible role of these filament-particle associations is discussed.


Subject(s)
Characeae/cytology , Chlorophyta/cytology , Chrysophyta/cytology , Cysteine Endopeptidases , Cytoskeleton/physiology , Multienzyme Complexes , Cytoplasm/ultrastructure , Fluorescent Antibody Technique , Proteasome Endopeptidase Complex , Species Specificity
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