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1.
Glycobiology ; 30(3): 186-197, 2020 02 19.
Article in English | MEDLINE | ID: mdl-31691790

ABSTRACT

Coccidioides spp. are important pneumonia-causing pathogens of the American southwest, but little is known about their glycobiology and how their glycosylations differ from other pneumonia-causing fungi. There is mounting preliminary evidence to suggest genus or even species-specific glycosylations in the fungal kingdom due to the presence of unique carbohydrate-active enzymes (CAZymes) in fungal genomes (Deshpande et al. 2008, Glycobiology, 18(8), 626-637; Karkowska-Kuleta and Kozik 2015, Acta Biochim Pol., 62(3), 339-351). If Coccidioides spp.-specific glycans can be identified, it may be possible to exploit these differences to develop more specific diagnostic approaches and more effective therapeutics. Herein, we i) mined Coccidioides spp. and other pathogenic fungal genomes to identify CAZymes specific for Coccidioides spp., ii) proteomically determined the Coccidioides spp. "CAZome" produced in vivo and in vitro, and iii) utilized glycomics to differentiate Coccidioides genus-specific N-glycans from other pathogenic fungi. As far as we are aware, this is the first proteomic and glycomic comparison of the N-glycomes and CAZomes of different fungal genera during infection in human hosts.


Subject(s)
Coccidioides/enzymology , Coccidioidomycosis/diagnosis , Fungal Proteins/analysis , Polysaccharides/analysis , Coccidioides/isolation & purification , Coccidioides/metabolism , Coccidioidomycosis/metabolism , Coccidioidomycosis/microbiology , Fungal Proteins/biosynthesis , Fungal Proteins/genetics , Glycomics , Glycosylation , Humans , Polysaccharides/metabolism , Proteomics
2.
RNA ; 22(10): 1500-9, 2016 10.
Article in English | MEDLINE | ID: mdl-27492257

ABSTRACT

Yeast tRNA ligase (Trl1) is an essential trifunctional enzyme that repairs RNA breaks with 2',3'-cyclic-PO4 and 5'-OH ends. Trl1 is composed of C-terminal cyclic phosphodiesterase and central polynucleotide kinase domains that heal the broken ends to generate the 3'-OH, 2'-PO4, and 5'-PO4 termini required for sealing by an N-terminal ligase domain. Trl1 enzymes are found in all human fungal pathogens and they are promising targets for antifungal drug discovery because: (i) their domain structures and biochemical mechanisms are unique compared to the mammalian RtcB-type tRNA splicing enzyme; and (ii) there are no obvious homologs of the Trl1 ligase domain in mammalian proteomes. Here we characterize the tRNA ligases of two human fungal pathogens: Coccidioides immitis and Aspergillus fumigatus The biological activity of CimTrl1 and AfuTrl1 was verified by showing that their expression complements a Saccharomyces cerevisiae trl1Δ mutant. Purified recombinant AfuTrl1 and CimTrl1 proteins were catalytically active in joining 2',3'-cyclic-PO4 and 5'-OH ends in vitro, either as full-length proteins or as a mixture of separately produced healing and sealing domains. The biochemical properties of CimTrl1 and AfuTrl1 are similar to those of budding yeast Trl1, particularly with respect to their preferential use of GTP as the phosphate donor for the polynucleotide kinase reaction. Our findings provide genetic and biochemical tools to screen for inhibitors of tRNA ligases from pathogenic fungi.


Subject(s)
Aspergillus fumigatus/enzymology , Coccidioides/enzymology , Fungal Proteins/metabolism , RNA Ligase (ATP)/metabolism , Aspergillus fumigatus/genetics , Coccidioides/genetics , Fungal Proteins/genetics , Guanosine Triphosphate/metabolism , RNA Ligase (ATP)/genetics , RNA Splicing , RNA, Transfer/genetics , RNA, Transfer/metabolism , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/metabolism
3.
J Lipid Res ; 57(8): 1518-28, 2016 08.
Article in English | MEDLINE | ID: mdl-27282156

ABSTRACT

Linoleate dioxygenase-cytochrome P450 (DOX-CYP) fusion enzymes are common in pathogenic fungi. The DOX domains form hydroperoxy metabolites of 18:2n-6, which can be transformed by the CYP domains to 1,2- or 1,4-diols, epoxy alcohols, or to allene oxides. We have characterized two novel allene oxide synthases (AOSs), namely, recombinant 8R-DOX-AOS of Coccidioides immitis (causing valley fever) and 8S-DOX-AOS of Zymoseptoria tritici (causing septoria tritici blotch of wheat). The 8R-DOX-AOS oxidized 18:2n-6 sequentially to 8R-hydroperoxy-9Z,12Z-octadecadienoic acid (8R-HPODE) and to an allene oxide, 8R(9)-epoxy-9,12Z-octadecadienoic acid, as judged from the accumulation of the α-ketol, 8S-hydroxy-9-oxo-12Z-octadecenoic acid. The 8S-DOX-AOS of Z. tritici transformed 18:2n-6 sequentially to 8S-HPODE and to an α-ketol, 8R-hydroxy-9-oxo-12Z-octadecenoic acid, likely formed by hydrolysis of 8S(9)-epoxy-9,12Z-octadecadienoic acid. The 8S-DOX-AOS oxidized [8R-(2)H]18:2n-6 to 8S-HPODE with retention of the (2)H-label, suggesting suprafacial hydrogen abstraction and oxygenation in contrast to 8R-DOX-AOS. Both enzymes oxidized 18:1n-9 and 18:3n-3 to α-ketols, but the catalysis of the 8R- and 8S-AOS domains differed. 8R-DOX-AOS transformed 9R-HPODE to epoxy alcohols, but 8S-DOX-AOS converted 9S-HPODE to an α-ketol (9-hydroxy-10-oxo-12Z-octadecenoic acid) and epoxy alcohols in a ratio of ∼1:2. Whereas all fatty acid allene oxides described so far have a conjugated diene impinging on the epoxide, the allene oxides formed by 8-DOX-AOS are unconjugated.


Subject(s)
Ascomycota/enzymology , Coccidioides/enzymology , Cytochrome P-450 Enzyme System/chemistry , Fungal Proteins/chemistry , Intramolecular Oxidoreductases/chemistry , Arachidonic Acid/chemistry , Arachidonic Acid/metabolism , Biocatalysis , Cytochrome P-450 Enzyme System/physiology , Fungal Proteins/physiology , Humans , Hydrolysis , Intramolecular Oxidoreductases/physiology , Oxidation-Reduction , Recombinant Fusion Proteins/chemistry
4.
J Biol Chem ; 291(22): 11911-27, 2016 May 27.
Article in English | MEDLINE | ID: mdl-27036943

ABSTRACT

The mitochondrial tyrosyl-tRNA synthetases (mtTyrRSs) of Pezizomycotina fungi, a subphylum that includes many pathogenic species, are bifunctional proteins that both charge mitochondrial tRNA(Tyr) and act as splicing cofactors for autocatalytic group I introns. Previous studies showed that one of these proteins, Neurospora crassa CYT-18, binds group I introns by using both its N-terminal catalytic and C-terminal anticodon binding domains and that the catalytic domain uses a newly evolved group I intron binding surface that includes an N-terminal extension and two small insertions (insertions 1 and 2) with distinctive features not found in non-splicing mtTyrRSs. To explore how this RNA binding surface diverged to accommodate different group I introns in other Pezizomycotina fungi, we determined x-ray crystal structures of C-terminally truncated Aspergillus nidulans and Coccidioides posadasii mtTyrRSs. Comparisons with previous N. crassa CYT-18 structures and a structural model of the Aspergillus fumigatus mtTyrRS showed that the overall topology of the group I intron binding surface is conserved but with variations in key intron binding regions, particularly the Pezizomycotina-specific insertions. These insertions, which arose by expansion of flexible termini or internal loops, show greater variation in structure and amino acids potentially involved in group I intron binding than do neighboring protein core regions, which also function in intron binding but may be more constrained to preserve mtTyrRS activity. Our results suggest a structural basis for the intron specificity of different Pezizomycotina mtTyrRSs, highlight flexible terminal and loop regions as major sites for enzyme diversification, and identify targets for therapeutic intervention by disrupting an essential RNA-protein interaction in pathogenic fungi.


Subject(s)
Aspergillus nidulans/enzymology , Coccidioides/enzymology , Introns/genetics , Mitochondria/enzymology , RNA Splicing/genetics , Tyrosine-tRNA Ligase/chemistry , Tyrosine-tRNA Ligase/metabolism , Amino Acid Sequence , Aspergillus nidulans/genetics , Aspergillus nidulans/growth & development , Catalytic Domain , Coccidioides/genetics , Coccidioides/growth & development , Crystallography, X-Ray , Models, Molecular , Molecular Sequence Data , Neurospora crassa/enzymology , Protein Binding , Protein Conformation , Sequence Homology, Amino Acid , Tyrosine-tRNA Ligase/genetics
5.
Antimicrob Agents Chemother ; 59(12): 7249-54, 2015 Dec.
Article in English | MEDLINE | ID: mdl-26369964

ABSTRACT

Coccidioidomycosis, or valley fever, is a growing health concern endemic to the southwestern United States. Safer, more effective, and more easily administered drugs are needed especially for severe, chronic, or unresponsive infections. The novel fungal CYP51 inhibitor VT-1161 demonstrated in vitro antifungal activity, with MIC50 and MIC90 values of 1 and 2 µg/ml, respectively, against 52 Coccidioides clinical isolates. In the initial animal study, oral doses of 10 and 50 mg/kg VT-1161 significantly reduced fungal burdens and increased survival time in a lethal respiratory model in comparison with treatment with a placebo (P < 0.001). Oral doses of 25 and 50 mg/kg VT-1161 were similarly efficacious in the murine central nervous system (CNS) model compared to placebo treatment (P < 0.001). All comparisons with the positive-control drug, fluconazole at 50 mg/kg per day, demonstrated either statistical equivalence or superiority of VT-1161. VT-1161 treatment also prevented dissemination of infection from the original inoculation site to a greater extent than fluconazole. Many of these in vivo results can be explained by the long half-life of VT-1161 leading to sustained high plasma levels. Thus, the efficacy and pharmacokinetics of VT-1161 are attractive characteristics for long-term treatment of this serious fungal infection.


Subject(s)
14-alpha Demethylase Inhibitors/pharmacology , Antifungal Agents/pharmacology , Coccidioides/drug effects , Coccidioidomycosis/drug therapy , Fluconazole/pharmacology , Fungemia/prevention & control , Pyridines/pharmacology , Tetrazoles/pharmacology , 14-alpha Demethylase Inhibitors/blood , 14-alpha Demethylase Inhibitors/pharmacokinetics , Animals , Antifungal Agents/blood , Antifungal Agents/pharmacokinetics , Coccidioides/enzymology , Coccidioides/growth & development , Coccidioidomycosis/microbiology , Coccidioidomycosis/mortality , Coccidioidomycosis/pathology , Disease Models, Animal , Female , Fluconazole/blood , Fluconazole/pharmacokinetics , Fungal Proteins/antagonists & inhibitors , Fungal Proteins/genetics , Fungal Proteins/metabolism , Fungemia/microbiology , Fungemia/mortality , Fungemia/pathology , Half-Life , Humans , Mice , Microbial Sensitivity Tests , Pyridines/blood , Pyridines/pharmacokinetics , Sterol 14-Demethylase/genetics , Sterol 14-Demethylase/metabolism , Survival Analysis , Tetrazoles/blood , Tetrazoles/pharmacokinetics , Treatment Outcome
6.
Microb Pathog ; 59-60: 19-28, 2013.
Article in English | MEDLINE | ID: mdl-23583291

ABSTRACT

Coccidioides is the causative agent of a potentially life-threatening respiratory disease of humans. A feature of this mycosis is that pH measurements of the microenvironment of pulmonary abscesses are consistently alkaline due to ammonia production during the parasitic cycle. We previously showed that enzymatically active urease is partly responsible for elevated concentrations of extracellular ammonia at sites of lung infection and contributes to both localized host tissue damage and exacerbation of the respiratory disease in BALB/c mice. Disruption of the urease gene (URE) of Coccidioides posadasii only partially reduced the amount of ammonia detected during in vitro growth of the parasitic phase, suggesting that other ammonia-producing pathways exist that may also contribute to the virulence of this pathogen. Ureidoglycolate hydrolase (Ugh) expressed by bacteria, fungi and higher plants catalyzes the hydrolysis of ureidoglycolate to yield glyoxylate and the release CO2 and ammonia. This enzymatic pathway is absent in mice and humans. Ureidoglycolate hydrolase gene deletions were conducted in a wild type (WT) isolate of C. posadasii as well as the previously generated Δure knock-out strain. Restorations of UGH in the mutant stains were performed to generate and evaluate the respective revertants. The double mutant revealed a marked decrease in the amount of extracellular ammonia without loss of reproductive competence in vitro compared to both the WT and Δure parental strains. BALB/c mice challenged intranasally with the Δugh/Δure mutant showed 90% survival after 30 days, decreased fungal burden, and well-organized pulmonary granulomas. We conclude that loss of both Ugh and Ure activity significantly reduced the virulence of this fungal pathogen.


Subject(s)
Amidine-Lyases/metabolism , Ammonia/metabolism , Coccidioides/metabolism , Coccidioides/pathogenicity , Coccidioidomycosis/pathology , Lung Diseases, Fungal/pathology , Urease/metabolism , Amidine-Lyases/genetics , Animals , Coccidioides/enzymology , Coccidioides/genetics , Coccidioidomycosis/microbiology , Disease Models, Animal , Gene Knockout Techniques , Humans , Lung Diseases, Fungal/microbiology , Mice , Mice, Inbred BALB C , Survival Analysis , Urease/genetics , Virulence
7.
BMC Struct Biol ; 11: 39, 2011 Oct 13.
Article in English | MEDLINE | ID: mdl-21995815

ABSTRACT

BACKGROUND: Ribose-5-phosphate isomerase is an enzyme that catalyzes the interconversion of ribose-5-phosphate and ribulose-5-phosphate. This family of enzymes naturally occurs in two distinct classes, RpiA and RpiB, which play an important role in the pentose phosphate pathway and nucleotide and co-factor biogenesis. RESULTS: Although RpiB occurs predominantly in bacteria, here we report crystal structures of a putative RpiB from the pathogenic fungus Coccidioides immitis. A 1.9 Å resolution apo structure was solved by combined molecular replacement and single wavelength anomalous dispersion (SAD) phasing using a crystal soaked briefly in a solution containing a high concentration of iodide ions. RpiB from C. immitis contains modest sequence and high structural homology to other known RpiB structures. A 1.8 Å resolution phosphate-bound structure demonstrates phosphate recognition and charge stabilization by a single positively charged residue whereas other members of this family use up to five positively charged residues to contact the phosphate of ribose-5-phosphate. A 1.7 Å resolution structure was obtained in which the catalytic base of C. immitis RpiB, Cys76, appears to form a weakly covalent bond with the central carbon of malonic acid with a bond distance of 2.2 Å. This interaction may mimic that formed by the suicide inhibitor iodoacetic acid with RpiB. CONCLUSION: The C. immitis RpiB contains the same fold and similar features as other members of this class of enzymes such as a highly reactive active site cysteine residue, but utilizes a divergent phosphate recognition strategy and may recognize a different substrate altogether.


Subject(s)
Aldose-Ketose Isomerases/chemistry , Coccidioides/enzymology , Aldose-Ketose Isomerases/genetics , Aldose-Ketose Isomerases/metabolism , Amino Acid Sequence , Binding Sites , Catalytic Domain , Crystallography, X-Ray , Iodides/chemistry , Molecular Sequence Data , Protein Structure, Tertiary , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Ribulosephosphates/chemistry , Ribulosephosphates/metabolism , Sequence Alignment , Substrate Specificity
8.
Acta Crystallogr Sect F Struct Biol Cryst Commun ; 67(Pt 9): 1015-21, 2011 Sep 01.
Article in English | MEDLINE | ID: mdl-21904043

ABSTRACT

The Protein Maker is an automated purification system developed by Emerald BioSystems for high-throughput parallel purification of proteins and antibodies. This instrument allows multiple load, wash and elution buffers to be used in parallel along independent lines for up to 24 individual samples. To demonstrate its utility, its use in the purification of five recombinant PB2 C-terminal domains from various subtypes of the influenza A virus is described. Three of these constructs crystallized and one diffracted X-rays to sufficient resolution for structure determination and deposition in the Protein Data Bank. Methods for screening lysis buffers for a cytochrome P450 from a pathogenic fungus prior to upscaling expression and purification are also described. The Protein Maker has become a valuable asset within the Seattle Structural Genomics Center for Infectious Disease (SSGCID) and hence is a potentially valuable tool for a variety of high-throughput protein-purification applications.


Subject(s)
Automation/instrumentation , Coccidioides/chemistry , Sterol 14-Demethylase/isolation & purification , Automation/methods , Coccidioides/enzymology , Sterol 14-Demethylase/metabolism
9.
Acta Crystallogr Sect F Struct Biol Cryst Commun ; 67(Pt 9): 1038-43, 2011 Sep 01.
Article in English | MEDLINE | ID: mdl-21904047

ABSTRACT

Coccidioides immitis is a pathogenic fungus populating the southwestern United States and is a causative agent of coccidioidomycosis, sometimes referred to as Valley Fever. Although the genome of this fungus has been sequenced, many operons are not properly annotated. Crystal structures are presented for a putative uncharacterized protein that shares sequence similarity with ζ-class glutathione S-transferases (GSTs) in both apo and glutathione-bound forms. The apo structure reveals a nonsymmetric homodimer with each protomer comprising two subdomains: a C-terminal helical domain and an N-terminal thioredoxin-like domain that is common to all GSTs. Half-site binding is observed in the glutathione-bound form. Considerable movement of some components of the active site relative to the glutathione-free form was observed, indicating an induced-fit mechanism for cofactor binding. The sequence homology, structure and half-site occupancy imply that the protein is a ζ-class glutathione S-transferase, a maleylacetoacetate isomerase (MAAI).


Subject(s)
Coccidioides/enzymology , Glutathione Transferase/chemistry , Apoproteins/chemistry , Crystallography, X-Ray , Humans , Models, Molecular , Protein Structure, Tertiary , Structural Homology, Protein
10.
J Struct Funct Genomics ; 12(2): 83-95, 2011 Jul.
Article in English | MEDLINE | ID: mdl-21359836

ABSTRACT

The Seattle Structural Genomics Center for Infectious Disease (SSGCID) focuses on the structure elucidation of potential drug targets from class A, B, and C infectious disease organisms. Many SSGCID targets are selected because they have homologs in other organisms that are validated drug targets with known structures. Thus, many SSGCID targets are expected to be solved by molecular replacement (MR), and reflective of this, all proteins are expressed in native form. However, many community request targets do not have homologs with known structures and not all internally selected targets readily solve by MR, necessitating experimental phase determination. We have adopted the use of iodide ion soaks and single wavelength anomalous dispersion (SAD) experiments as our primary method for de novo phasing. This method uses existing native crystals and in house data collection, resulting in rapid, low cost structure determination. Iodide ions are non-toxic and soluble at molar concentrations, facilitating binding at numerous hydrophobic or positively charged sites. We have used this technique across a wide range of crystallization conditions with successful structure determination in 16 of 17 cases within the first year of use (94% success rate). Here we present a general overview of this method as well as several examples including SAD phasing of proteins with novel folds and the combined use of SAD and MR for targets with weak MR solutions. These cases highlight the straightforward and powerful method of iodide ion SAD phasing in a high-throughput structural genomics environment.


Subject(s)
Bacterial Proteins/chemistry , Fructose-Bisphosphate Aldolase/chemistry , Iodides/chemistry , Phosphoric Monoester Hydrolases/chemistry , Protozoan Proteins/chemistry , Amino Acid Sequence , Babesia bovis/metabolism , Binding Sites , Cloning, Molecular , Coccidioides/enzymology , Crystallography, X-Ray/methods , Models, Molecular , Molecular Sequence Data , Mycobacterium avium/enzymology , Protein Structure, Secondary , Sequence Alignment
11.
Med Mycol ; 48(5): 744-56, 2010 Aug.
Article in English | MEDLINE | ID: mdl-20109094

ABSTRACT

Two full-length cDNAs were isolated from Coccidioides posadasii that encode two deduced proteins (CpHEX1 and CpHEX2) with homology to the glycosyl hydrolase 20 family of beta-N-acetylhexosaminidases. CpHEX1 consists of 595 amino acids, has a predicted molecular mass of 68 kDa and shares the highest identity with the N-acetylhexosaminidase (NAGA) of Aspergillus nidulans, while CpHEX2 consists of 603 amino acids, has a predicted molecular mass of 68.5 kDa and shares the highest identity with NAG1 from Paracoccidioides brasiliensis. CpHEX1 and CpHEX2 share only 23% identity and have dissimilar homologies showing more identity with other fungal beta-N-acetylhexosaminidases than with each other. Phylogenetic analysis of selected beta-N-acetylhexosaminidases placed CpHEX1 in a cluster with the orthologs from A. nidulans, Aspergillus oryzae, Penicillium chrysogenum and Candida albicans, while CpHEX2 grouped with the orthologs from P. brasiliensis and the Trichoderma spp. beta-N-acetylhexosaminidase activity and transcripts encoding CpHEX1 and CpHEX2 were detected in vitro during the spherule-endospore (SE) phase. Expression of the Cphex1 transcript exhibited a temporal increase that correlated with beta-N-acetylhexosaminidase activity, while the Cphex2 transcript remained relatively constant. The addition of N-acetylglucosamine to the cultures increased beta-N-acetylhexosaminidase activity and the expression of the Cphex1 transcript. A native beta-N-acetylhexosaminidase enzyme was purified from in vitro SE phase and identified as CpHEX1 by mass spectrometric analysis. Both the CpHEX1 and CpHEX2 cDNAs were expressed as recombinant fusion proteins and purified under denaturing conditions to apparent homogeneity but they lacked enzymatic activity.


Subject(s)
Coccidioides/enzymology , Fungal Proteins/genetics , Fungal Proteins/metabolism , beta-N-Acetylhexosaminidases/genetics , beta-N-Acetylhexosaminidases/metabolism , Acetylglucosamine/metabolism , Amino Acid Sequence , Cloning, Molecular , Cluster Analysis , DNA, Complementary/genetics , DNA, Complementary/isolation & purification , DNA, Fungal/genetics , DNA, Fungal/isolation & purification , Fungal Proteins/chemistry , Fungal Proteins/isolation & purification , Gene Expression Profiling , Humans , Molecular Sequence Data , Molecular Weight , Phylogeny , Recombinant Fusion Proteins/isolation & purification , Recombinant Fusion Proteins/metabolism , Sequence Homology, Amino Acid , beta-N-Acetylhexosaminidases/chemistry , beta-N-Acetylhexosaminidases/isolation & purification
12.
Mycopathologia ; 166(1): 35-40, 2008 Jul.
Article in English | MEDLINE | ID: mdl-18386157

ABSTRACT

Coccidioides immitis is the causative agent of coccidioidomycosis, a systemic mycosis that attacks humans and a wide variety of animals. In the present study, we showed that the C. immitis mycelial form is able to release proteolytic enzyme into the extracellular environment. Under chemically defined growth conditions, mycelia secreted seven distinct polypeptides ranging from 15 to 65 kDa and an extracellular peptidase of 25 kDa. This enzyme had its activity fully inhibited by phenylmethylsulphonyl fluoride, a serine peptidase inhibitor. Conversely, metallo, cysteine, and aspartyl peptidase inhibitors did not alter the 25-kDa enzyme behavior. This extracellular serine peptidase was able to degrade keratin, a fibrous protein that composes human epidermis. Additionally, this peptidase cleaved different protein substrates, including gelatin, casein, hemoglobin, and albumin. Curiously, an 18-kDa serine peptidase activity was evidenced solely when casein was used as the co-polymerized protein substrate into the gel. The existence of different secreted peptidases could be advantageous for the adaptation of C. immitis to distinct environments during its complex life cycle.


Subject(s)
Coccidioides/enzymology , Fungal Proteins/metabolism , Peptide Hydrolases/metabolism , Serine Endopeptidases/metabolism , Animals , Brazil , Coccidioides/isolation & purification , Coccidioides/pathogenicity , Coccidioidomycosis/microbiology , Fungal Proteins/chemistry , Humans , Molecular Weight , Peptide Hydrolases/chemistry , Serine Endopeptidases/chemistry
13.
Proc Natl Acad Sci U S A ; 105(16): 6010-5, 2008 Apr 22.
Article in English | MEDLINE | ID: mdl-18413600

ABSTRACT

The bifunctional Neurospora crassa mitochondrial tyrosyl-tRNA synthetase (CYT-18 protein) both aminoacylates mitochondrial tRNA(Tyr) and acts as a structure-stabilizing splicing cofactor for group I introns. Previous studies showed that CYT-18 has distinct tRNA(Tyr) and group I intron-binding sites, with the latter formed by three small "insertions" in the nucleotide-binding fold and other structural adaptations compared with nonsplicing bacterial tyrosyl-tRNA synthetases. Here, analysis of genomic sequences shows that mitochondrial tyrosyl-tRNA synthetases with structural adaptations similar to CYT-18's are uniquely characteristic of fungi belonging to the subphylum Pezizomycotina, and biochemical assays confirm group I intron splicing activity for the enzymes from several of these organisms, including Aspergillus nidulans and the human pathogens Coccidioides posadasii and Histoplasma capsulatum. By combining multiple sequence alignments with a previously determined cocrystal structure of a CYT-18/group I intron RNA complex, we identify conserved features of the Pezizomycotina enzymes related to group I intron and tRNA interactions. Our results suggest that mitochondrial tyrosyl-tRNA synthetases with group I intron splicing activity evolved during or after the divergence of the fungal subphyla Pezizomycotina and Saccharomycotina by a mechanism involving the concerted differentiation of preexisting protein loop regions. The unique group I intron splicing activity of these fungal enzymes may provide a new target for antifungal drugs.


Subject(s)
Alternative Splicing , Evolution, Molecular , Fungal Proteins/metabolism , Introns/genetics , Mitochondrial Proteins/metabolism , Tyrosine-tRNA Ligase/metabolism , Amino Acid Sequence , Antifungal Agents/chemistry , Antifungal Agents/pharmacology , Aspergillus nidulans/enzymology , Aspergillus nidulans/genetics , Coccidioides/enzymology , Coccidioides/genetics , Conserved Sequence , Fungal Proteins/chemistry , Fungal Proteins/genetics , Histoplasma/enzymology , Histoplasma/genetics , Mitochondria/enzymology , Mitochondrial Proteins/chemistry , Mitochondrial Proteins/genetics , Molecular Sequence Data , Mutagenesis, Insertional , Neurospora crassa/enzymology , Neurospora crassa/genetics , Protein Conformation , RNA, Fungal/genetics , RNA, Fungal/metabolism , Sequence Alignment , Sequence Analysis, Protein , Tyrosine/metabolism , Tyrosine-tRNA Ligase/chemistry , Tyrosine-tRNA Ligase/genetics
14.
Med Mycol ; 44(7): 631-9, 2006 Nov.
Article in English | MEDLINE | ID: mdl-17071557

ABSTRACT

This study extends phenotypic and ecological knowledge of Coccidioides spp., by describing its recovery from soils of Ceará State (Northeast Brazil) and analyzing the in vitro features of the growth of its vegetative phase. Following a human coccidioidomycosis case, Coccidioides spp. strains were isolated from 3 of 14 soil samples collected in an armadillo's burrow. Mycological analysis showed colonies with glabrous, velvety or cottony texture and an increasing quantity of arthroconidia. The overall growth rates of the strains were slower in 8% NaCl medium, maximum growth rate was obtained at 30 degrees C, and their pH tolerance ranged from 4.0 to 11.0. Several carbohydrates and polyalcohol sources could be efficiently metabolized by Coccidioides spp. strains in the mycelial form. Total absence of growth was observed in media supplemented with either L-aspartic acid or L-histidine. Whereas intense growth was found when strains were incubated with any other aminoacid sources studied. Coccidioides spp. strains did not grow in the presence of Tween 60 and Tween 80, but exhibited intense growth in Tween 20. Nicotinic acid and the toxic compounds caffeic acid and phenol could not be metabolized by any strain. All of the strains were positive for urease production and displayed intense growth in media containing cycloheximide concentrations ranging from 0.01 and 0.05%, but did not grow at 0.1 and 0.2%. The present findings confirm the importance of armadillos burrows in the ecology of Coccidioides spp. in Northeast Brazil and indicate that the fungus is a very physiologically versatile organism.


Subject(s)
Coccidioides/isolation & purification , Coccidioides/physiology , Ecology , Soil Microbiology , Animals , Armadillos/microbiology , Brazil , Coccidioides/enzymology , Coccidioides/genetics , Ecosystem , Environment , Phenotype
15.
Fungal Genet Biol ; 43(11): 775-88, 2006 Nov.
Article in English | MEDLINE | ID: mdl-16857399

ABSTRACT

Coccidioides posadasii is a dimorphic fungal pathogen of humans and other mammals. The switch between saprobic and parasitic growth involves synthesis of new cell walls of which chitin is a significant component. To determine whether particular subsets of chitin synthases (CHSes) are responsible for production of chitin at different stages of differentiation, we have isolated six CHS genes from this fungus. They correspond, together with another reported CHS gene, to single members of the seven defined classes of chitin synthases (classes I-VII). Using Real-Time RT-PCR we show their pattern of expression during morphogenesis. CpCHS2, CpCHS3, and CpCHS6 are preferentially expressed during the saprobic phase, while CpCHS1 and CpCHS4 are more highly expressed during the parasitic phase. CpCHS5 and CpCHS7 expression is similar in both saprobic and parasitic phases. Because C. posadasii contains single members of the seven classes of CHSes found in fungi, it is a good model to investigate the putatively different roles of these genes in fungal growth and differentiation.


Subject(s)
Chitin Synthase/genetics , Coccidioides/genetics , Fungal Proteins/genetics , Gene Expression Regulation, Enzymologic , Gene Expression Regulation, Fungal , Animals , Base Sequence , Chitin Synthase/classification , Coccidioides/enzymology , Coccidioides/growth & development , Coccidioides/pathogenicity , Fungal Proteins/biosynthesis , Gene Expression Profiling/methods , Gene Expression Regulation, Enzymologic/genetics , Gene Expression Regulation, Fungal/genetics , Humans , Molecular Sequence Data , Reverse Transcriptase Polymerase Chain Reaction/methods
16.
Science ; 312(5773): 583-8, 2006 Apr 28.
Article in English | MEDLINE | ID: mdl-16645097

ABSTRACT

Microbial pathogens that normally inhabit our environment can adapt to thrive inside mammalian hosts. There are six dimorphic fungi that cause disease worldwide, which switch from nonpathogenic molds in soil to pathogenic yeast after spores are inhaled and exposed to elevated temperature. Mechanisms that regulate this switch remain obscure. We show that a hybrid histidine kinase senses host signals and triggers the transition from mold to yeast. The kinase also regulates cell-wall integrity, sporulation, and expression of virulence genes in vivo. This global regulator shapes how dimorphic fungal pathogens adapt to the mammalian host, which has broad implications for treating and preventing systemic fungal disease.


Subject(s)
Blastomyces/genetics , Blastomyces/pathogenicity , Protein Kinases/genetics , Protein Kinases/physiology , Animals , Blastomyces/cytology , Blastomyces/enzymology , Blastomycosis/microbiology , Coccidioides/enzymology , Coccidioides/genetics , Coccidioides/pathogenicity , Fungal Proteins/genetics , Fungal Proteins/physiology , Gene Expression Regulation, Fungal , Genes, Fungal , Genetic Complementation Test , Histidine Kinase , Histoplasma/enzymology , Histoplasma/genetics , Histoplasma/pathogenicity , Histoplasmosis/microbiology , Lung Diseases, Fungal/microbiology , Mice , Mice, Inbred C57BL , Molecular Sequence Data , Mutagenesis, Insertional , Open Reading Frames , Protein Kinases/chemistry , RNA Interference , Saccharomyces cerevisiae/genetics , Soil Microbiology , Spores, Fungal/physiology , Temperature , Virulence/genetics
17.
Infect Immun ; 74(1): 504-15, 2006 Jan.
Article in English | MEDLINE | ID: mdl-16369007

ABSTRACT

Urease activity during in vitro growth in the saprobic and parasitic phases of Coccidioides spp. is partly responsible for production of intracellular ammonia released into the culture media and contributes to alkalinity of the external microenvironment. Although the amino acid sequence of the urease of Coccidioides posadasii lacks a predicted signal peptide, the protein is transported from the cytosol into vesicles and the central vacuole of parasitic cells (spherules). Enzymatically active urease is released from the contents of mature spherules during the parasitic cycle endosporulation stage. The endospores, together with the urease and additional material which escape from the ruptured parasitic cells, elicit an intense host inflammatory response. Ammonia production by the spherules of C. posadasii is markedly increased by the availability of exogenous urea found in relatively high concentrations at sites of coccidioidal infection in the lungs of mice. Direct measurement of the pH at these infection sites revealed an alkaline microenvironment. Disruption of the urease gene of C. posadasii resulted in a marked reduction in the amount of ammonia secreted in vitro by the fungal cells. BALB/c mice challenged intranasally with the mutant strain showed increased survival, a well-organized granulomatous response to infection, and better clearance of the pathogen than animals challenged with either the parental or the reconstituted (revertant) strain. We conclude that ammonia and enzymatically active urease released from spherules during the parasitic cycle of C. posadasii contribute to host tissue damage, which exacerbates the severity of coccidioidal infection and enhances the virulence of this human respiratory pathogen.


Subject(s)
Coccidioides/enzymology , Coccidioides/pathogenicity , Coccidioidomycosis/enzymology , Respiratory Tract Infections/enzymology , Respiratory Tract Infections/microbiology , Urease/physiology , Animals , Coccidioides/genetics , Cytoplasmic Vesicles/enzymology , Hydrogen-Ion Concentration , Immunoblotting , Lung Diseases, Fungal/enzymology , Lung Diseases, Fungal/microbiology , Lung Diseases, Fungal/pathology , Mice , Mice, Inbred BALB C , Mutation , Urease/deficiency , Urease/genetics , Vacuoles/enzymology , Virulence
18.
Infect Immun ; 74(1): 516-27, 2006 Jan.
Article in English | MEDLINE | ID: mdl-16369008

ABSTRACT

Coccidioidomycosis is a respiratory disease of humans caused by the desert soil-borne fungal pathogens Coccidioides spp. Recurrent epidemics of this mycosis in the southwestern United States have contributed significantly to escalated health care costs. Clinical and experimental studies indicate that prior symptomatic coccidioidomycosis induces immunity against subsequent infection, and activation of T cells is essential for containment of the pathogen and its clearance from host tissue. Development of a human vaccine against coccidioidomycosis has focused on recombinant T-cell-reactive antigens which elicit a durable protective immune response against pulmonary infection in mice. In this study we fractionated a protective multicomponent parasitic cell wall extract in an attempt to identify T-cell antigens. Immunoblots of electrophoretic separations of this extract identified patient seroreactive proteins which were subsequently excised from two-dimensional polyacrylamide gel electrophoresis gels, trypsin digested, and sequenced by tandem mass spectrometry. The full-length gene which encodes a dominant protein in the immunoblot was identified using established methods of bioinformatics. The gene was cloned and expressed, and the recombinant protein was shown to stimulate immune T cells in vitro. The deduced protein was predicted to contain epitopes that bind to human major histocompatibility complex class II molecules using a TEPITOPE-based algorithm. Synthetic peptides corresponding to the predicted T-cell epitopes induced gamma interferon production by immune T lymphocytes. The T-cell-reactive antigen, which is homologous to secreted fungal aspartyl proteases, protected mice against pulmonary infection with Coccidioides posadasii. We argue that this immunoproteomic/bioinformatic approach to the identification of candidate vaccines against coccidioidomycosis is both efficient and productive.


Subject(s)
Aspartic Acid Endopeptidases/physiology , Coccidioides/enzymology , Coccidioidomycosis/enzymology , Coccidioidomycosis/prevention & control , Fungal Vaccines/immunology , Lung Diseases, Fungal/enzymology , Lung Diseases, Fungal/prevention & control , Amino Acid Sequence , Animals , Aspartic Acid Endopeptidases/genetics , Aspartic Acid Endopeptidases/immunology , Cell Extracts/immunology , Cell Wall/immunology , Coccidioides/genetics , Coccidioides/immunology , Coccidioides/pathogenicity , Coccidioidomycosis/immunology , Electrophoresis, Gel, Two-Dimensional , Epitopes, T-Lymphocyte/immunology , Fungal Vaccines/administration & dosage , Immunoblotting , Lung Diseases, Fungal/immunology , Mice , Molecular Sequence Data , Vaccines, Synthetic/administration & dosage , Vaccines, Synthetic/immunology
19.
Infect Immun ; 73(10): 6689-703, 2005 Oct.
Article in English | MEDLINE | ID: mdl-16177346

ABSTRACT

Coccidioides posadasii is a fungal respiratory pathogen of humans that can cause disease in immunocompetent individuals. Coccidioidomycosis ranges from a mild to a severe infection. It is frequently characterized either as a persistent disease that requires months to resolve or as an essentially asymptomatic infection that can reactivate several years after the original insult. In this report we describe a mechanism by which the pathogen evades host detection during the pivotal reproductive (endosporulation) phase of the parasitic cycle. A metalloproteinase (Mep1) secreted during endospore differentiation digests an immunodominant cell surface antigen (SOWgp) and prevents host recognition of endospores during the phase of development when these fungal cells are most vulnerable to phagocytic cell defenses. C57BL/6 mice were immunized with recombinant SOWgp and then challenged with a mutant strain of C. posadasii in which the MEP1 gene was disrupted. The animals showed a significant increase in percent survival compared to SOWgp-immune mice challenged with the parental strain. To explain these results, we proposed that retention of SOWgp on the surfaces of endospores of the mutant strain in the presence of high titers of antibody to the immunodominant antigen contributes to opsonization, increased phagocytosis, and killing of the fungal cells. In vitro studies of the interaction between a murine alveolar macrophage cell line and parasitic cells coated with SOWgp showed that the addition of anti-SOWgp antibody could enhance phagocytosis and killing of Coccidioides. We suggest that Mep1 plays a pivotal role as a pathogenicity determinant during coccidioidal infections and contributes to the ability of the pathogen to persist within the mammalian host.


Subject(s)
Antigens, Fungal/metabolism , Coccidioides/pathogenicity , Coccidioidomycosis/immunology , Metalloendopeptidases/metabolism , Phagocytosis , Animals , Antibodies, Fungal/immunology , Antigens, Fungal/analysis , Antigens, Fungal/immunology , Coccidioides/enzymology , Coccidioides/immunology , Coccidioidomycosis/enzymology , Macrophages, Alveolar/immunology , Metalloendopeptidases/genetics , Mice , Mice, Inbred C57BL , Molecular Sequence Data , Mutation , Opsonin Proteins/immunology , Spores, Fungal/enzymology , Spores, Fungal/growth & development
20.
Eukaryot Cell ; 4(1): 111-20, 2005 Jan.
Article in English | MEDLINE | ID: mdl-15643067

ABSTRACT

1,3-beta-Glucan synthase is responsible for the synthesis of beta-glucan, an essential cell wall structural component in most fungi. We sought to determine whether Coccidioides posadasii possesses genes homologous to known fungal FKS genes that encode the catalytic subunit of 1,3-beta-glucan synthase. A single gene, designated FKS1, was identified, and examination of its predicted protein product showed a high degree of conservation with Fks proteins from other filamentous fungi. FKS1 is expressed at similar levels in mycelia and early spherulating cultures, and expression decreases as the spherules mature. We used Agrobacterium-mediated transformation to create strains that harbor DeltaFKS1::hygB, a null allele of FKS1, and hypothesize that Fks1p function is essential, due to our inability to purify this allele away from a complementing wild-type FKS1 allele in a heterokaryotic strain. The heterokaryon appears normal with respect to growth rate and arthroconidium production; however, microscopic examination of strains with DeltaFKS1::hygB alleles revealed abnormal swelling of hyphal elements.


Subject(s)
Coccidioides/enzymology , Coccidioides/physiology , Glucosyltransferases/genetics , Glucosyltransferases/physiology , Alleles , Amino Acid Sequence , Blotting, Southern , Catalytic Domain , Cell Nucleus/metabolism , Cell Proliferation , Cell Survival , Cell Wall/metabolism , Cells, Cultured , Fungal Proteins/metabolism , Gene Deletion , Gene Library , Genes, Fungal , Mitosis , Models, Genetic , Molecular Sequence Data , Plasmids/metabolism , RNA/metabolism , Reverse Transcriptase Polymerase Chain Reaction , Rhizobium/genetics , Sequence Homology, Amino Acid , Time Factors
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