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1.
Vet Microbiol ; 239: 108451, 2019 Dec.
Article in English | MEDLINE | ID: mdl-31767095

ABSTRACT

The substantial genetic diversity exhibited by influenza A viruses of swine (IAV-S) represents the main challenge for the development of a broadly protective vaccine against this important pathogen. The consensus vaccine immunogen has proven an effective vaccinology approach to overcome the extraordinary genetic diversity of RNA viruses. In this project, we sought to determine if a consensus IAV-S hemagglutinin (HA) immunogen would elicit broadly protective immunity in pigs. To address this question, a consensus HA gene (designated H3-CON.1) was generated from a set of 1,112 H3 sequences of IAV-S recorded in GenBank from 2011 to 2015. The consensus HA gene and a HA gene of a naturally occurring H3N2 IAV-S strain (designated H3-TX98) were expressed using the baculovirus expression system and emulsified in an oil-in-water adjuvant to be used for vaccination. Pigs vaccinated with H3-CON.1 immunogen elicited broader levels of cross-reactive neutralizing antibodies and interferon gamma secreting cells than those vaccinated with H3-TX98 immunogen. After challenge infection with a fully infectious H3N2 IAV-S isolate, the H3-CON.1-vaccinated pigs shed significantly lower levels of virus in their nasal secretions than the H3-TX98-vaccinated pigs. Collectively, our data provide a proof-of-evidence that the consensus immunogen approach may be effectively employed to develop a broadly protective vaccine against IAV-S.


Subject(s)
Genes, Viral/immunology , Hemagglutinin Glycoproteins, Influenza Virus/immunology , Influenza Vaccines/immunology , Orthomyxoviridae Infections , Swine Diseases , Vaccination/veterinary , Animals , Antibodies, Viral/blood , Consensus Sequence/genetics , Consensus Sequence/immunology , Hemagglutinin Glycoproteins, Influenza Virus/genetics , Orthomyxoviridae Infections/immunology , Orthomyxoviridae Infections/virology , Swine , Swine Diseases/immunology , Swine Diseases/virology , Virus Shedding/immunology
2.
Vaccine ; 35(46): 6308-6320, 2017 11 01.
Article in English | MEDLINE | ID: mdl-28987441

ABSTRACT

Dengue viruses (DENVs) are re-emerging pathogens transmitted by mosquitoes mainly in tropical and subtropical regions. Each year, they are estimated to infect 390 million people globally. The major challenge confronting dengue vaccine development is the need to induce balanced, long lasting tetravalent immune responses against four co-circulating virus serotypes (DENV-I, -II, -III, -IV), because primary infection by any one of which may predispose infected individuals to more severe diseases during a heterotypic secondary infection. Another difficulty is to select representative strains in vaccine design to provide cross-protection against most circulating virus strains. In this study, aimed at developing a tetravalent subunit vaccine with a representative single protein, we designed two vaccines (named cE80(D4) and cE80(max)) based on the consensus sequences of the ectodomain of envelope protein of 3127 DENV strains, and then expressed them in the baculovirus expression system. Both vaccines were capable of eliciting specific antibodies against all four DENV serotypes, and the predominant IgG subtype elicited by the two vaccines was IgG1. Moreover, these vaccines activated both type I and type II antigen-specific helper T cells that secreted IFN-γ and IL-4, respectively. This proof-of-concept study has set foundation for further optimization of a single protein-based tetravalent DENV vaccine.


Subject(s)
Antibody Formation , Consensus Sequence/immunology , Cross Protection , Dengue Vaccines/immunology , Dengue Virus/immunology , Viral Envelope Proteins/immunology , Animals , Antibodies, Viral/blood , Baculoviridae/genetics , Dengue Vaccines/administration & dosage , Dengue Vaccines/genetics , Dengue Virus/genetics , Female , Gene Expression , Genetic Vectors , Immunoglobulin G/blood , Interferon-gamma/metabolism , Interleukin-4/metabolism , Mice, Inbred BALB C , Th1 Cells/immunology , Th2 Cells/immunology , Vaccines, Subunit/administration & dosage , Vaccines, Subunit/genetics , Vaccines, Subunit/immunology , Vaccines, Synthetic/administration & dosage , Vaccines, Synthetic/genetics , Vaccines, Synthetic/immunology , Viral Envelope Proteins/genetics
3.
PLoS One ; 10(10): e0140702, 2015.
Article in English | MEDLINE | ID: mdl-26469190

ABSTRACT

With the exception of the live attenuated influenza vaccine there have been no substantial changes in influenza vaccine strategies since the 1940's. Here we report an alternative vaccine approach that uses Adenovirus-vectored centralized hemagglutinin (HA) genes as vaccine antigens. Consensus H1-Con, H3-Con and H5-Con HA genes were computationally derived. Mice were immunized with Ad vaccines expressing the centralized genes individually. Groups of mice were vaccinated with 1 X 1010, 5 X 107 and 1 X 107 virus particles per mouse to represent high, intermediate and low doses, respectively. 100% of the mice that were vaccinated with the high dose vaccine were protected from heterologous lethal challenges within each subtype. In addition to 100% survival, there were no signs of weight loss and disease in 7 out of 8 groups of high dose vaccinated mice. Lower doses of vaccine showed a reduction of protection in a dose-dependent manner. However, even the lowest dose of vaccine provided significant levels of protection against the divergent influenza strains, especially considering the stringency of the challenge virus. In addition, we found that all doses of H5-Con vaccine were capable of providing complete protection against mortality when challenged with lethal doses of all 3 H5N1 influenza strains. This data demonstrates that centralized H1-Con, H3-Con and H5-Con genes can be effectively used to completely protect mice against many diverse strains of influenza. Therefore, we believe that these Ad-vectored centralized genes could be easily translated into new human vaccines.


Subject(s)
Adaptive Immunity/genetics , Hemagglutinin Glycoproteins, Influenza Virus/immunology , Influenza Vaccines , Orthomyxoviridae Infections/prevention & control , Animals , Consensus Sequence/genetics , Consensus Sequence/immunology , Female , HEK293 Cells , Hemagglutinin Glycoproteins, Influenza Virus/genetics , Humans , Influenza Vaccines/genetics , Influenza Vaccines/immunology , Influenza, Human/prevention & control , Mice , Mice, Inbred BALB C , Vaccination/methods
4.
PLoS One ; 8(1): e54882, 2013.
Article in English | MEDLINE | ID: mdl-23372786

ABSTRACT

We studied all consensus sequences within the four least 'variable blocks' (VB) present in the DBL6ε domain of VAR2CSA, the protein involved in the adhesion of infected red blood cells by Plasmodium falciparum that causes the Pregnancy-Associated Malaria (PAM). Characterising consensus sequences with respect to recognition of antibodies and percentage of responders among pregnant women living in areas where P. falciparum is endemic allows the identification of the most antigenic sequences within each VB. When combining these consensus sequences among four serotypes from VB1 or VB5, the most often recognized ones are expected to induce pan-reactive antibodies recognizing VAR2CSA from all plasmodial strains. These sequences are of main interest in the design of an immunogenic molecule. Using a similar approach than for DBL6ε, we studied the five other DBL and the CIDRpam from VAR2CSA, and again identified VB segments with highly conserved consensus sequences. In addition, we identified consensus sequences in other var genes expressed by non-PAM parasites. This finding paves the way for vaccine design against other pathologies caused by P. falciparum.


Subject(s)
Antigens, Protozoan/immunology , Malaria, Falciparum/immunology , Plasmodium falciparum/immunology , Protein Interaction Domains and Motifs/immunology , Adult , Amino Acid Motifs/immunology , Amino Acid Sequence , Antibodies, Protozoan/blood , Antibodies, Protozoan/immunology , Antigens, Protozoan/chemistry , Consensus Sequence/immunology , Epitopes, B-Lymphocyte/chemistry , Epitopes, B-Lymphocyte/immunology , Epitopes, B-Lymphocyte/metabolism , Female , Humans , Immunoglobulin G/blood , Immunoglobulin G/immunology , Models, Molecular , Molecular Sequence Data , Peptides/chemistry , Peptides/immunology , Pregnancy , Protein Binding , Protein Conformation , Sequence Alignment , Young Adult
5.
AIDS Res Hum Retroviruses ; 29(1): 47-53, 2013 Jan.
Article in English | MEDLINE | ID: mdl-22924625

ABSTRACT

HLA-B*27:05 is one of the widely reported alleles associated with resistance to HIV, while HLA-A24, HLA-B7, HLA-B*07:02, HLA-B*35:01, HLA-B*53:01, and HLA-B40 are reported to be associated with susceptibility to HIV. Using a bioinformatics approach we attempted to predict potential HLA-B*27:05-specific HIV-1C epitopes that do not bind to susceptibility-associated HLA alleles based on our hypothesis that such epitopes have a greater probability of eliciting a protective immune response in the host. A consensus sequence was built for all proteins of Indian clade C virus. Epitopes specific to HLA-B*27:05 were predicted from the consensus sequence using two different bioinformatics methods to enhance the accuracy of the prediction. Epitopes that were also predicted to bind to any of the susceptibility-associated HLA alleles were excluded from the list. The short-listed epitopes were modeled using MODPROPEP to refine the prediction. Fourteen peptides were identified as epitopes by both sequence-based methods and were found to interact strongly with HLA-B*27:05 by molecular modeling studies. Five of the 14 epitopes were previously reported as immunogenic by other researchers, while the remaining nine are novel. The 14 epitopes have been repeatedly identified by three different methods indicating their potential as useful candidates for an effective HIV vaccine.


Subject(s)
Epitopes, T-Lymphocyte/genetics , HIV-1/immunology , HLA-B27 Antigen/genetics , T-Lymphocytes, Cytotoxic/immunology , Computational Biology , Consensus Sequence/genetics , Consensus Sequence/immunology , Epitopes, T-Lymphocyte/immunology , HIV Infections/genetics , HIV Infections/immunology , HLA-B27 Antigen/immunology , Humans , Immunity, Cellular/genetics , Immunity, Cellular/physiology , India
6.
J Immunol ; 188(10): 5177-88, 2012 May 15.
Article in English | MEDLINE | ID: mdl-22508927

ABSTRACT

Vaccines designed to prevent or to treat hepatitis C viral infection must achieve maximum cross-reactivity against widely divergent circulating strains. Rational approaches for sequence selection to maximize immunogenicity and minimize genetic distance across circulating strains may enhance vaccine induction of optimal cytotoxic T cell responses. We assessed T cell recognition of potential hepatitis C virus (HCV) vaccine sequences generated using three rational approaches: combining epitopes with predicted tight binding to the MHC, consensus sequence (most common amino acid at each position), and representative ancestral sequence that had been derived using bayesian phylogenetic tools. No correlation was seen between peptide-MHC binding affinity and frequency of recognition, as measured by an IFN-γ T cell response in HLA-matched HCV-infected individuals. Peptides encoding representative, consensus, and natural variant sequences were then tested for the capacity to expand CD8 T cell populations and to elicit cross-reactive CD8 T cell responses. CD8(+) T cells expanded with representative sequence HCV generally more broadly and robustly recognized highly diverse circulating HCV strains than did T cells expanded with either consensus sequence or naturally occurring sequence variants. These data support the use of representative sequence in HCV vaccine design.


Subject(s)
Hepacivirus/immunology , Hepatitis C/immunology , Peptide Fragments/immunology , Peptide Fragments/metabolism , Cell Line , Cells, Cultured , Cohort Studies , Consensus Sequence/immunology , Cross Reactions/immunology , HLA Antigens/immunology , Hepatitis C/metabolism , Hepatitis C/virology , Humans , Peptide Fragments/chemical synthesis , Prospective Studies , Viral Hepatitis Vaccines/chemical synthesis , Viral Hepatitis Vaccines/immunology , Viral Hepatitis Vaccines/metabolism
7.
J Immunol ; 186(5): 3047-57, 2011 Mar 01.
Article in English | MEDLINE | ID: mdl-21307297

ABSTRACT

T and B lymphocytes are developmentally and functionally related cells of the immune system, representing the two major branches of adaptive immunity. Although originating from a common precursor, they play very different roles: T cells contribute to and drive cell-mediated immunity, whereas B cells secrete Abs. Because of their functional importance and well-characterized differentiation pathways, T and B lymphocytes are ideal cell types with which to understand how functional differences are encoded at the transcriptional level. Although there has been a great deal of interest in defining regulatory factors that distinguish T and B cells, a truly genomewide view of the transcriptional differences between these two cells types has not yet been taken. To obtain a more global perspective of the transcriptional differences underlying T and B cells, we exploited the statistical power of combinatorial profiling on different microarray platforms, and the breadth of the Immunological Genome Project gene expression database, to generate robust differential signatures. We find that differential expression in T and B cells is pervasive, with the majority of transcripts showing statistically significant differences. These distinguishing characteristics are acquired gradually, through all stages of B and T differentiation. In contrast, very few T versus B signature genes are uniquely expressed in these lineages, but are shared throughout immune cells.


Subject(s)
B-Lymphocyte Subsets/immunology , Gene Expression Profiling/methods , Genome , Oligonucleotide Array Sequence Analysis/methods , T-Lymphocyte Subsets/immunology , Transcription, Genetic/immunology , Animals , B-Lymphocyte Subsets/cytology , B-Lymphocyte Subsets/metabolism , Cell Differentiation/genetics , Cell Differentiation/immunology , Cell Lineage/genetics , Cell Lineage/immunology , Consensus Sequence/genetics , Consensus Sequence/immunology , Gene Expression Profiling/statistics & numerical data , High-Throughput Screening Assays/methods , High-Throughput Screening Assays/statistics & numerical data , Mice , Mice, Inbred C57BL , Oligonucleotide Array Sequence Analysis/statistics & numerical data , Random Allocation , Signal Transduction/immunology , T-Lymphocyte Subsets/cytology , T-Lymphocyte Subsets/metabolism
8.
AIDS Res Hum Retroviruses ; 26(5): 577-84, 2010 May.
Article in English | MEDLINE | ID: mdl-20438382

ABSTRACT

Consensus HIV-1 genes can decrease the genetic distances between candidate immunogens and field virus strains. To ensure the functionality and optimal presentation of immunologic epitopes, we generated two group-M consensus env genes that contain variable regions either from a wild-type B/C recombinant virus isolate (CON6) or minimal consensus elements (CON-S) in the V1, V2, V4, and V5 regions. C57BL/6 and BALB/c mice were primed twice with CON6, CON-S, and subtype control (92UG37_A and HXB2/Bal_B) DNA and boosted with recombinant vaccinia virus (rVV). Mean antibody titers against 92UG37_A, 89.6_B, 96ZM651_C, CON6, and CON-S Env protein were determined. Both CON6 and CON-S induced higher mean antibody titers against several of the proteins, as compared with the subtype controls. However, no significant differences were found in mean antibody titers in animals immunized with CON6 or CON-S. Cellular immune responses were measured by using five complete Env overlapping peptide sets: subtype A (92UG37_A), subtype B (MN_B, 89.6_B and SF162_B), and subtype C (Chn19_C). The intensity of the induced cellular responses was measured by using pooled Env peptides; T-cell epitopes were identified by using matrix peptide pools and individual peptides. No significant differences in T-cell immune-response intensities were noted between CON6 and CON-S immunized BALB/c and C57BL/6 mice. In BALB/c mice, 10 and eight nonoverlapping T-cell epitopes were identified in CON6 and CON-S, whereas eight epitopes were identified in 92UG37_A and HXB2/BAL_B. In C57BL/6 mice, nine and six nonoverlapping T-cell epitopes were identified after immunization with CON6 and CON-S, respectively, whereas only four and three were identified in 92UG37_A and HXB2/BAL_B, respectively. When combined together from both mouse strains, 18 epitopes were identified. The group M artificial consensus env genes, CON6 and CON-S, were equally immunogenic in breadth and intensity for inducing humoral and cellular immune responses.


Subject(s)
AIDS Vaccines/immunology , Consensus Sequence/immunology , HIV-1/immunology , T-Lymphocytes/immunology , Vaccines, DNA/immunology , env Gene Products, Human Immunodeficiency Virus/immunology , AIDS Vaccines/genetics , Amino Acid Sequence , Animals , Consensus Sequence/genetics , Epitopes, T-Lymphocyte/genetics , Epitopes, T-Lymphocyte/immunology , Female , HIV Antibodies/blood , HIV Infections/immunology , HIV Infections/prevention & control , HIV-1/classification , HIV-1/genetics , Immunization , Mice , Mice, Inbred BALB C , Mice, Inbred C57BL , Molecular Sequence Data , Vaccines, DNA/genetics , Vaccinia virus/genetics , Vaccinia virus/immunology , env Gene Products, Human Immunodeficiency Virus/chemistry , env Gene Products, Human Immunodeficiency Virus/genetics
9.
J Immunol ; 184(9): 5253-62, 2010 May 01.
Article in English | MEDLINE | ID: mdl-20368270

ABSTRACT

MCP1 is upregulated by various stimuli, including LPS, high glucose, and hyperosmolality. However, the molecular mechanisms of transcriptional regulation of the MCP1 gene under hyperosmolar conditions are poorly understood. Treatment of NRK52E cells with NaCl or mannitol resulted in significant elevation of MCP1 mRNA and protein in a time- and dose-dependent manner. Treatment with a p38MAPK inhibitor (SB203580), an ERK inhibitor (PD98059), or an MEK inhibitor (U0126), suppressed the increase in MCP1 expression caused by hypertonic NaCl, whereas a JNK inhibitor (SP600125) and an AP1 inhibitor (curcumin) failed to attenuate MCP1 mRNA expression by NaCl. In the 5'-flanking region of the MCP1 gene, there is a sequence motif similar to the consensus TonE/ORE as well as the consensus C/E binding protein (BP), NF-kappaB, and AP1/Sp1 sites. Luciferase activity in cells transfected with reporter constructs containing a putative TonE/ORE element (MCP1-TonE/ORE) enhanced reporter gene expression under hypertonic stress. Results of electrophoretic gel mobility shift assay showed a slow migration of the MCP1-TonE/ORE probe, representing the binding of TonEBP/OREBP/NFAT5 to this enhancer element. These results indicate that the 5'-flanking region of MCP1 contains a hypertonicity-sensitive cis-acting element, MCP1-TonE/ORE, as a novel element in the MCP1 gene. Furthermore, p38MAPK and MEK-ERK pathways appear to be, at least in part, involved in hypertonic stress-mediated regulation of MCP1 expression through the MCP1-TonE/ORE.


Subject(s)
Chemokine CCL2/genetics , Enhancer Elements, Genetic/immunology , MAP Kinase Signaling System/genetics , MAP Kinase Signaling System/immunology , Transcription Factors/physiology , 5' Untranslated Regions/immunology , Animals , Cell Line , Chemokine CCL2/biosynthesis , Consensus Sequence/immunology , Enhancer Elements, Genetic/genetics , Gene Expression Regulation, Enzymologic/immunology , Hypertonic Solutions/pharmacology , Male , Mitogen-Activated Protein Kinase 1/genetics , Mitogen-Activated Protein Kinase 1/physiology , Mitogen-Activated Protein Kinase 3/genetics , Mitogen-Activated Protein Kinase 3/physiology , NFATC Transcription Factors/metabolism , Osmolar Concentration , Rats , Rats, Sprague-Dawley , Transcription Factors/metabolism , p38 Mitogen-Activated Protein Kinases/genetics , p38 Mitogen-Activated Protein Kinases/physiology
10.
J Immunol ; 184(9): 4926-35, 2010 May 01.
Article in English | MEDLINE | ID: mdl-20363974

ABSTRACT

The functional integrity of CD4(+) T cells is crucial for well-orchestrated immunity and control of HIV-1 infection, but their selective depletion during infection creates a paradox for understanding a protective response. We used multiparameter flow cytometry to measure activation, memory maturation, and multiple functions of total and Ag-specific CD4(+) T cells in 14 HIV-1- and CMV- coinfected individuals at 3 and 12 mo post HIV-1 infection. Primary HIV-1 infection was characterized by elevated levels of CD38, HLA-DR, and Ki67 in total memory and Gag-specific CD4(+) and CD8(+) T cells. In both HIV-infected and 15 uninfected controls, the frequency of activated cells was uniformly distributed among early differentiated (ED; CD45RO(+)CD27(+)), late differentiated (CD45RO(+)CD27(-)), and fully differentiated effector (CD45RO(-)CD27(-)) memory CD4(+) T cells. In HIV-1-infected individuals, activated CD4(+) T cells significantly correlated with viremia at 3 mo postinfection (r = 0.79, p = 0.0007) and also harbored more gag provirus DNA copies than nonactivated cells (p = 0.04). Moreover, Gag-specific ED CD4(+) T cells inversely associated with plasma viral load (r = -0.87, p < 0.0001). Overall, we show that low copy numbers of gag provirus and plasma RNA copies associated with low CD4 activation as well as accumulation of ED HIV-specific CD4(+) memory. Significant positive correlations between 3 and 12 mo activation and memory events highlighted that a steady state of CD4(+) T cell activation and memory maturation was established during primary infection and that these cells were unlikely to be involved in influencing the course of viremia in the first 12 mo of HIV-1 infection.


Subject(s)
CD4-Positive T-Lymphocytes/cytology , CD4-Positive T-Lymphocytes/immunology , HIV Infections/immunology , HIV Infections/pathology , HIV-1/classification , HIV-1/immunology , Immunologic Memory , Lymphocyte Activation/immunology , CD4-Positive T-Lymphocytes/virology , Cohort Studies , Consensus Sequence/immunology , Cytomegalovirus Infections/immunology , Cytomegalovirus Infections/pathology , Cytomegalovirus Infections/virology , HIV Infections/virology , Humans , Prospective Studies , Viral Load/immunology , Viremia/immunology , Viremia/pathology , Virus Replication/immunology , gag Gene Products, Human Immunodeficiency Virus/immunology
11.
J Immunol ; 183(9): 5575-81, 2009 Nov 01.
Article in English | MEDLINE | ID: mdl-19843941

ABSTRACT

Fas apoptosis inhibitory molecule (FAIM) was originally cloned as an inhibitor of Fas-mediated apoptosis in B cells that has been reported to affect multiple cell types. Recently, we found that FAIM enhances CD40L-mediated signal transduction, including induction of IFN regulatory factor (IRF)4, in vitro and augments plasma cell production in vivo. These results have keyed interest in the regulation of FAIM expression, about which little is known. Here, we show that Faim is regulated by IRF4. The Faim promoter contains three IRF binding sites, any two of which promote Faim expression. Faim promoter activity is lost following mutation of all three IRF binding sites, whereas activity of the full promoter is enhanced by concurrent expression of IRF4. In stimulated primary B cells, IRF4 expression precedes FAIM expression, IRF4 binds directly to the Faim promoter, and loss of IRF4 results in the failure of stimulated Faim up-regulation. Finally, FAIM is preferentially expressed in germinal center B cells. Taken together, these results indicate that FAIM expression is regulated through IRF4 and that this most likely occurs as part of germinal center formation. Because FAIM enhances CD40-induced IRF4 expression in B cells, these results suggest that induction of FAIM initiates a positive reinforcing (i.e., feed-forward) system in which IRF4 expression is both enhanced by FAIM and promotes FAIM expression.


Subject(s)
Apoptosis Regulatory Proteins/biosynthesis , Apoptosis/immunology , B-Lymphocyte Subsets/immunology , B-Lymphocyte Subsets/metabolism , Interferon Regulatory Factors/physiology , Up-Regulation/immunology , fas Receptor/antagonists & inhibitors , Amino Acid Sequence , Animals , Apoptosis/genetics , Apoptosis Regulatory Proteins/deficiency , Apoptosis Regulatory Proteins/genetics , B-Lymphocyte Subsets/cytology , Base Sequence , Cell Line, Tumor , Cells, Cultured , Consensus Sequence/immunology , Germinal Center/cytology , Germinal Center/immunology , Germinal Center/metabolism , Interferon Regulatory Factors/deficiency , Interferon Regulatory Factors/genetics , Male , Mice , Mice, Inbred BALB C , Mice, Knockout , Molecular Sequence Data , PC12 Cells , Promoter Regions, Genetic/immunology , Rats , Up-Regulation/genetics , fas Receptor/physiology
12.
J Interferon Cytokine Res ; 29(8): 461-8, 2009 Aug.
Article in English | MEDLINE | ID: mdl-19514841

ABSTRACT

Most of our knowledge of helical cytokine-like molecules in invertebrates relies on functional assays and similarities at the physicochemical level. It is hard to predict helical cytokines in invertebrates based on sequences from mammals and vertebrates, because of their long evolutionary divergence. In this article, we collected 12 kinds of fish cytokines and constructed their respective consensus sequences using hidden Markov models; then, the conserved domains region of each consensus sequence were further extracted by the SMART tool, and used as the query sequence for PSI-BLAST analysis in Drosophila melanogaster. After two filtering processes based on the properties of helical cytokines, we obtained one protein named CG14629, which shares 25% identities/46% positives to fish M17 cytokine in the half length of the N-terminus. Considering the homology between M17 and LIF/CNTF (leukemia inhibitory factor/ciliary neurotrophic factor), and the close relationship between Dome, the putative cytokine receptor in Drosophila cells, and LIFR/CNTFR (LIF receptor/CNTF receptor), the results suggest that CG14629 is a good candidate for the helical cytokine ortholog in D. melanogaster.


Subject(s)
Ciliary Neurotrophic Factor/genetics , Cytokines/genetics , Drosophila Proteins/genetics , Fish Proteins/genetics , Sequence Alignment , Structural Homology, Protein , Animals , Ciliary Neurotrophic Factor/chemistry , Computational Biology , Computer Simulation , Consensus Sequence/genetics , Consensus Sequence/immunology , Cytokines/chemistry , Drosophila Proteins/chemistry , Drosophila melanogaster , Evolution, Molecular , Fish Proteins/chemistry , Fishes , Protein Structure, Secondary , Receptor, Ciliary Neurotrophic Factor/chemistry , Receptor, Ciliary Neurotrophic Factor/genetics , Receptors, Interleukin/chemistry , Receptors, Interleukin/genetics , Structure-Activity Relationship
13.
Vaccine ; 27(17): 2356-66, 2009 Apr 14.
Article in English | MEDLINE | ID: mdl-19428851

ABSTRACT

We had earlier reported the construction and characterization of a high affinity recombinant scFv generated from a potential neutralizing mouse monoclonal antibody against the Hepatitis B surface antigen. In this report we describe the humanization of this scFv by grafting its antigen binding site onto framework of the human consensus sequence of highest similarity. We have used molecular modeling to alter not only the clearly permissible residues but also several minimal positional template and V(H)/V(L) interface residues. The humanized scFv retains the binding characteristic of the mouse monoclonal even under conditions that usually destabilize antigen antibody interactions. This high affinity humanized scFv provides a basis for the development of prophylactic/therapeutic molecules.


Subject(s)
Antibody Affinity , Consensus Sequence/immunology , Hepatitis B Antibodies/chemistry , Hepatitis B Antibodies/immunology , Amino Acid Sequence , Amino Acid Substitution , Animals , Antibodies, Monoclonal/biosynthesis , Antibodies, Monoclonal/chemistry , Antibodies, Monoclonal/immunology , Antibody Specificity , Hepatitis B Antibodies/biosynthesis , Humans , Immunoglobulin Variable Region/genetics , Immunoglobulin Variable Region/immunology , Immunologic Techniques , Mice , Models, Immunological , Molecular Sequence Data , Recombinant Fusion Proteins/biosynthesis
14.
Vaccine ; 27(32): 4337-49, 2009 Jul 09.
Article in English | MEDLINE | ID: mdl-19389453

ABSTRACT

Envelope (Env) sequences from human immunodeficiency virus (HIV) strains can vary by 15-20% within a single clade and as much as 35% between clades. Previous AIDS vaccines based upon a single isolate often could not elicit protective immune responses against heterologous viral challenges. In order to address the vast sequence diversity in Env sequences, consensus sequences were constructed for clade B and clade C envelopes and delivered to the mouse lung mucosa on the surface of virus-like particles (VLP). Consensus sequences decrease the genetic difference between the vaccine strain and any given viral isolate. The elicited immune responses were compared to a mixture of VLPs with Envs from primary viral isolates. This polyvalent vaccine approach contains multiple, diverse Envs to increase the breadth of epitopes recognized by the immune response and thereby increase the potential number of primary isolates recognized. Both consensus and polyvalent clade B Env VLP vaccines elicited cell-mediated immune responses that recognized a broader number of clade B Env peptides than a control monovalent Env VLP vaccine in both the systemic and the mucosal immune compartments. All three clade C Env vaccine strategies elicited similar responses to clade C peptides. However, both the consensus B and C Env VLP vaccines were more effective at eliciting cross-reactive cellular immune responses to epitopes in other clades. This is the first study to directly compare the breadth of cell-mediated immune responses elicited by consensus and polyvalent Env vaccines.


Subject(s)
AIDS Vaccines/immunology , Consensus Sequence/immunology , HIV/immunology , Immunity, Cellular , Immunity, Mucosal , env Gene Products, Human Immunodeficiency Virus/immunology , AIDS Vaccines/administration & dosage , AIDS Vaccines/genetics , Administration, Inhalation , Animals , Consensus Sequence/genetics , Cross Reactions , Female , Humans , Mice , Mice, Inbred BALB C , Vaccines, Virosome/genetics , Vaccines, Virosome/immunology , env Gene Products, Human Immunodeficiency Virus/genetics
15.
J Immunol ; 181(7): 5045-53, 2008 Oct 01.
Article in English | MEDLINE | ID: mdl-18802108

ABSTRACT

IFN consensus sequence binding protein (Icsbp) (IFN response factor-8) is a hematopoietic transcription factor with dual functions in myelopoiesis and immunity. In this study, we report a novel role of Icsbp in regulating the development of eosinophils. Loss of Icsbp in mice leads to a reduction of eosinophils in different tissues. During parasite infection with the nematode Nippostrongylus brasiliensis, Icsbp-deficient mice fail to mount eosinophilia despite a vigorous IL-5 response. Numbers of phenotypically defined eosinophil progenitors are decreased and those progenitors have, on a per-cell basis, reduced eosinophil differentiation potential. The transcription factor Gata1, crucial for eosinophil development, is reduced expressed in committed eosinophil progenitors in wells as mature eosinophils. These findings identify Icsbp as a novel transcription factor critical for the development of the eosinophil lineage.


Subject(s)
Cell Differentiation/immunology , Consensus Sequence , Eosinophils/pathology , Eosinophils/parasitology , Interferon Regulatory Factors/physiology , Animals , Cell Differentiation/genetics , Cells, Cultured , Consensus Sequence/genetics , Consensus Sequence/immunology , Eosinophilia/genetics , Eosinophilia/immunology , Eosinophilia/parasitology , Eosinophils/immunology , Eosinophils/metabolism , Interferon Regulatory Factors/deficiency , Interferon Regulatory Factors/genetics , Leukocyte Count , Mice , Mice, Inbred C57BL , Mice, Knockout , Nippostrongylus/immunology , Rats , Rats, Inbred Lew , Strongylida Infections/genetics , Strongylida Infections/immunology , Strongylida Infections/pathology , Transcription, Genetic/immunology
16.
Immunogenetics ; 60(1): 25-36, 2008 Jan.
Article in English | MEDLINE | ID: mdl-18092156

ABSTRACT

Several computational methods for the prediction of major histocompatibility complex (MHC) class II binding peptides embodying different strengths and weaknesses have been developed. To provide reliable prediction, it is important to design a system that enables the integration of outcomes from various predictors. The construction of a meta-predictor of this type based on a probabilistic approach is introduced in this paper. The design permits the easy incorporation of results obtained from any number of individual predictors. It is demonstrated that this integrated method outperforms six state-of-the-art individual predictors based on computational studies using MHC class II peptides from 13 HLA alleles and three mouse MHC alleles obtained from the Immune Epitope Database and Analysis Resource. It is concluded that this integrative approach provides a clearly enhanced reliability of prediction. Moreover, this computational framework can be directly extended to MHC class I binding predictions.


Subject(s)
Computational Biology/methods , HLA-D Antigens/metabolism , Peptides/immunology , Peptides/metabolism , Algorithms , Animals , Consensus Sequence/immunology , HLA-D Antigens/chemistry , HLA-D Antigens/immunology , Humans , Mice , Models, Immunological , Predictive Value of Tests , Probability , Protein Binding/immunology
17.
Biochem Biophys Res Commun ; 365(4): 685-90, 2008 Jan 25.
Article in English | MEDLINE | ID: mdl-18036340

ABSTRACT

Four IgE-binding epitopes have been characterized that cover a large area (40%) of the molecular surface of lipid transfer protein allergens of Rosaceae (apple, peach, apricot, and plum). They mainly correspond to electropositively charged regions protruding on the molecular surface of the modeled apple (Mal d 3), apricot (Pru ar 3), and plum (Pru d 3) allergens. Two of these epitopes consist of consensus epitopes structurally conserved among the lipid transfer protein allergens from the Rosaceae. Their occurrence in different lipid transfer protein allergens presumably accounts for the IgE-binding cross-reactivity often observed among different Rosaceae fruits. In this respect, LTP consist of phylogenetically- and structurally-related pan allergens. However, the IgE-binding cross-reactivity due to fruit lipid transfer protein has varying degrees of clinical relevance and this cross-reactivity is not necessarily accompanied by a cross-allergenicity to the corresponding fruits.


Subject(s)
Allergens/immunology , Antigens, Plant/chemistry , Antigens, Plant/immunology , Carrier Proteins/chemistry , Carrier Proteins/immunology , Epitopes/immunology , Fruit/immunology , Immunoglobulin E/immunology , Plant Proteins/chemistry , Plant Proteins/immunology , Animals , Consensus Sequence/immunology , Cross Reactions/immunology , Humans , Protein Binding , Rabbits
18.
Curr HIV Res ; 5(6): 572-7, 2007 Nov.
Article in English | MEDLINE | ID: mdl-18045113

ABSTRACT

Centralized HIV-1 genes (consensus, most recent common ancestor and center of the tree) have recently been explored for induction of broadly reactive immune responses to overcome the extraordinary genetic diversity among HIV-1 strains. Although all of these strategies are based on artificial sequences predicted by computer programs, they retain biological function, and use the CCR5 co-receptor for entry into target cells as transmitted HIV-1 Envs. Results from laboratory animals indicate that centralized immunogens are superior to many wild-type immunogens for inducing cross-subtype T and B cell immune responses. Structural modifications have improved the ability of consensus Envs to elicit antibody responses that neutralize a spectrum of HIV-1 Env pseudoviruses. However, the more difficult to neutralize tier 2 Env pseudoviruses are generally not neutralized well by anti-consensus Env antibodies, indicating the need for further modifications, new formulations, or additional strategies to generate antibodies that neutralize a full spectrum of transmitted HIV-1 strains.


Subject(s)
AIDS Vaccines/immunology , Consensus Sequence , env Gene Products, Human Immunodeficiency Virus/immunology , Consensus Sequence/genetics , Consensus Sequence/immunology , Genes, env/genetics , Genes, env/immunology , HIV-1/classification , HIV-1/genetics , HIV-1/immunology , Humans , Receptors, CCR5 , Vaccines, Synthetic
19.
J Immunol ; 179(6): 3831-40, 2007 Sep 15.
Article in English | MEDLINE | ID: mdl-17785820

ABSTRACT

CTLA-4 is a member of the costimulatory family, has homology to CD28, and binds the B7 family of ligands. Unlike CD28, CTLA-4 ligation transmits a negative signal in T cells. CTLA-4 expression, while inducible in most T cells, is expressed constitutively on T cells with a regulatory phenotype. The mechanism controlling CTLA-4 expression in human T cells is poorly characterized, thus we sought to better understand the mechanism of activation of the CTLA-4 gene. By cloning the 5' upstream promoter and creating promoter-deletion reporter constructs, we show that the proximal promoter is critical for activating the CTLA-4 gene. Within this region, we identify a NFAT consensus sequence that binds NFAT with high affinity that differs from other NFAT sequences and does not recruit AP-1. Analysis of the chromatin proteins in the native CTLA-4 gene shows that this promoter region becomes associated with acetylated histones by chromatin immunoprecipitation assays. In addition, NFAT1 binds to the promoter of the CTLA-4 gene after stimulation by chromatin immunoprecipitation. The functional requirement of the NFAT site for CTLA-4 transcription was demonstrated by mutations in the NFAT site that abolished the activity of the promoter. Furthermore, inhibitors of NFAT suppressed CTLA-4 gene expression, indicating that NFAT plays a critical role in regulating the induction of the CTLA-4 gene in lymphocytes. The identification of NFAT as a critical regulator of the CTLA-4 gene suggests that targeting NFAT function may lead to novel approaches to modulate the CTLA-4 gene to control the immune response.


Subject(s)
Antigens, CD/biosynthesis , Antigens, CD/genetics , Antigens, Differentiation/biosynthesis , Antigens, Differentiation/genetics , Gene Expression Regulation/immunology , NFATC Transcription Factors/metabolism , Promoter Regions, Genetic , T-Lymphocyte Subsets/immunology , T-Lymphocyte Subsets/metabolism , 5' Untranslated Regions/immunology , 5' Untranslated Regions/metabolism , Antigens, CD/metabolism , Antigens, Differentiation/metabolism , CTLA-4 Antigen , Cells, Cultured , Consensus Sequence/genetics , Consensus Sequence/immunology , Humans , NFATC Transcription Factors/antagonists & inhibitors , NFATC Transcription Factors/genetics , NFATC Transcription Factors/physiology , Promoter Regions, Genetic/immunology , Protein Binding/genetics , Protein Binding/immunology , RNA, Messenger/biosynthesis , Up-Regulation/immunology
20.
J Immunol ; 179(3): 1893-900, 2007 Aug 01.
Article in English | MEDLINE | ID: mdl-17641056

ABSTRACT

Although functionally relevant TLRs can be expressed on human T regulatory (Treg) cells, little is known about the transcriptional control of their expression. We hypothesized that the transcription factor forkhead box P3 (FOXP3) regulates the expression of TLR family members in human Treg cells. Using primary human T cells and a reporter assay in Jurkat T cell lines, we dissected the regulation of TLR10, a TLR highly expressed in human Treg cells. We determined that TLR10 was expressed in human Treg cells through quantitative PCR, Western blotting, and flow cytometry. DNA binding of FOXP3 to a suspected cis-regulatory region in proximity to the transcription start site of TLR10 was established through EMSA and chromatin immunoprecipitation. Transcriptional control of TLR10 by FOXP3 was determined through luciferase reporter assays in Jurkat T cell lines. Relevance of FOXP3 to TLR10 gene transcription in primary T cells was established through the transfection of primary CD4(+)CD25(-)FOXP3(-) T cells with a FOXP3 expression vector, which resulted in prompt production of TLR10 mRNA. Enhanced expression of TLR10 protein in primary Treg cells was induced in a calcium-dependent fashion through TCR activation. The suspected promotional cooperation between FOXP3 and NF-AT was established in the abolition of the luciferase signal upon transfection of a mutant FOXP3 devoid of NF-AT-binding activity. These results suggest that human Treg cells express TLR10, and this expression is regulated through a cooperative complex of FOXP3 and NF-AT.


Subject(s)
Forkhead Transcription Factors/physiology , Gene Expression Regulation/immunology , T-Lymphocytes, Regulatory/immunology , T-Lymphocytes, Regulatory/metabolism , Toll-Like Receptor 10/biosynthesis , Toll-Like Receptor 10/genetics , Consensus Sequence/immunology , Forkhead Transcription Factors/metabolism , Humans , Jurkat Cells , NFATC Transcription Factors/metabolism , NFATC Transcription Factors/physiology , Promoter Regions, Genetic/immunology , Protein Binding/immunology , Transcription Initiation Site , Transcriptional Activation/immunology
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