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1.
J Nanobiotechnology ; 22(1): 268, 2024 May 19.
Article in English | MEDLINE | ID: mdl-38764056

ABSTRACT

The development of cost-effective and eco-friendly fertilizers is crucial for enhancing iron (Fe) uptake in crops and can help alleviate dietary Fe deficiencies, especially in populations with limited access to meat. This study focused on the application of MgFe-layered double hydroxide nanoparticles (MgFe-LDHs) as a potential solution. We successfully synthesized and characterized MgFe-LDHs and observed that 1-10 mg/L MgFe-LDHs improved cucumber seed germination and water uptake. Notably, the application of 10 mg/L MgFe-LDHs to roots significantly increased the seedling emergence rate and growth under low-temperature stress. The application of 10 mg/L MgFe-LDHs during sowing increased the root length, lateral root number, root fresh weight, aboveground fresh weight, and hypocotyl length under low-temperature stress. A comprehensive analysis integrating plant physiology, nutrition, and transcriptomics suggested that MgFe-LDHs improve cold tolerance by upregulating SA to stimulate CsFAD3 expression, elevating GA3 levels for enhanced nitrogen metabolism and protein synthesis, and reducing levels of ABA and JA to support seedling emergence rate and growth, along with increasing the expression and activity of peroxidase genes. SEM and FTIR further confirmed the adsorption of MgFe-LDHs onto the root hairs in the mature zone of the root apex. Remarkably, MgFe-LDHs application led to a 46% increase (p < 0.05) in the Fe content within cucumber seedlings, a phenomenon not observed with comparable iron salt solutions, suggesting that the nanocrystalline nature of MgFe-LDHs enhances their absorption efficiency in plants. Additionally, MgFe-LDHs significantly increased the nitrogen (N) content of the seedlings by 12% (p < 0.05), promoting nitrogen fixation in the cucumber seedlings. These results pave the way for the development and use of LDH-based Fe fertilizers.


Subject(s)
Cold Temperature , Cucumis sativus , Iron , Seedlings , Cucumis sativus/growth & development , Cucumis sativus/metabolism , Cucumis sativus/drug effects , Seedlings/growth & development , Seedlings/metabolism , Seedlings/drug effects , Iron/metabolism , Plant Roots/metabolism , Plant Roots/growth & development , Germination/drug effects , Hydroxides/pharmacology , Hydroxides/metabolism , Fertilizers , Gene Expression Regulation, Plant/drug effects , Nanoparticles/chemistry , Stress, Physiological , Magnesium/metabolism
2.
BMC Plant Biol ; 24(1): 407, 2024 May 16.
Article in English | MEDLINE | ID: mdl-38755531

ABSTRACT

BACKGROUND: The goal of this research is to enhance the quality of cucumber seedlings grown in greenhouses by experimenting with various soilless culture mediums (CMs) and the application of pistachio wood vinegar (WV). The experimental setup was designed as a factorial experiment within a randomized complete block design (RCBD), in greenhouse conditions featuring three replications to assess the effects of different culture media (CMs) and concentrations of pistachio wood vinegar (WV) on cucumber seedling growth. Cucumber seeds were planted in three CMs: coco peat-peat moss, coco peat-vermicompost, and date palm compost-vermicompost mixed in a 75:25 volume-to-volume ratio. These were then treated with pistachio WV at concentrations of 0, 0.5, and 1%, applied four times during irrigation following the emergence of the third leaf. RESULTS: The study revealed that treating seedlings with 0.5% WV in the date palm compost-vermicompost CM significantly enhanced various growth parameters. Specifically, it resulted in a 90% increase in shoot fresh mass, a 59% increase in shoot dry mass, an 11% increase in root fresh mass, a 36% increase in root dry mass, a 65% increase in shoot length, a 62% increase in leaf area, a 25% increase in stem diameter, a 41% increase in relative water content (RWC), and a 6% improvement in membrane stability index (MSI), all in comparison to untreated seedlings grown in coco peat-peat moss CM. Furthermore, chlorophyll a, b, total chlorophyll, and carotenoid levels were 2.3, 2.7, 2.6, and 2.7 times higher, respectively, in seedlings treated with 0.5% WV and grown in the date palm compost-vermicompost CM, compared to those treated with the same concentration of WV but grown in coco peat-peat moss CM. Additionally, the Fv/Fm ratio saw a 52% increase. When plant nutrition was enhanced with the date palm compost-vermicompost CM and 1% WV, auxin content rose by 130% compared to seedlings grown in coco peat-peat moss CM and treated with 0.5% WV. CONCLUSIONS: The study demonstrates that using 0.5% WV in conjunction with date palm compost-vermicompost CM significantly betters the quality of cucumber seedlings, outperforming other treatment combinations.


Subject(s)
Cucumis sativus , Seedlings , Seedlings/growth & development , Seedlings/physiology , Cucumis sativus/growth & development , Cucumis sativus/physiology , Phoeniceae/physiology , Phoeniceae/growth & development , Acetic Acid/metabolism , Pistacia/physiology , Pistacia/growth & development , Composting/methods , Soil/chemistry , Chlorophyll/metabolism
3.
Plant Mol Biol ; 114(3): 52, 2024 May 02.
Article in English | MEDLINE | ID: mdl-38696020

ABSTRACT

Salt stress is one of the major factors limiting plant growth and productivity. Many studies have shown that serine hydroxymethyltransferase (SHMT) gene play an important role in growth, development and stress response in plants. However, to date, there have been few studies on whether SHMT3 can enhance salt tolerance in plants. Therefore, the effects of overexpression or silencing of CsSHMT3 gene on cucumber seedling growth under salt stress were investigated in this study. The results showed that overexpression of CsSHMT3 gene in cucumber seedlings resulted in a significant increase in chlorophyll content, photosynthetic rate and proline (Pro) content, and antioxidant enzyme activity under salt stress condition; whereas the content of malondialdehyde (MDA), superoxide anion (H2O2), hydrogen peroxide (O2·-) and relative conductivity were significantly decreased when CsSHMT3 gene was overexpressed. However, the content of chlorophyll and Pro, photosynthetic rate, and antioxidant enzyme activity of the silenced CsSHMT3 gene lines under salt stress were significantly reduced, while MDA, H2O2, O2·- content and relative conductivity showed higher level in the silenced CsSHMT3 gene lines. It was further found that the expression of stress-related genes SOD, CAT, SOS1, SOS2, NHX, and HKT was significantly up-regulated by overexpressing CsSHMT3 gene in cucumber seedlings; while stress-related gene expression showed significant decrease in silenced CsSHMT3 gene seedlings under salt stress. This suggests that overexpression of CsSHMT3 gene increased the salt tolerance of cucumber seedlings, while silencing of CsSHMT3 gene decreased the salt tolerance. In conclusion, CsSHMT3 gene might positively regulate salt stress tolerance in cucumber and be involved in regulating antioxidant activity, osmotic adjustment, and photosynthesis under salt stress. KEY MESSAGE: CsSHMT3 gene may positively regulate the expression of osmotic system, photosynthesis, antioxidant system and stress-related genes in cucumber.


Subject(s)
Chlorophyll , Cucumis sativus , Gene Expression Regulation, Plant , Photosynthesis , Salt Stress , Salt Tolerance , Seedlings , Cucumis sativus/genetics , Cucumis sativus/growth & development , Cucumis sativus/physiology , Cucumis sativus/drug effects , Seedlings/genetics , Seedlings/growth & development , Seedlings/drug effects , Seedlings/physiology , Gene Expression Regulation, Plant/drug effects , Salt Tolerance/genetics , Salt Stress/genetics , Chlorophyll/metabolism , Photosynthesis/genetics , Photosynthesis/drug effects , Hydrogen Peroxide/metabolism , Plant Proteins/genetics , Plant Proteins/metabolism , Glycine Hydroxymethyltransferase/genetics , Glycine Hydroxymethyltransferase/metabolism , Antioxidants/metabolism , Malondialdehyde/metabolism , Plants, Genetically Modified , Gene Silencing
4.
Plant Signal Behav ; 19(1): 2345983, 2024 Dec 31.
Article in English | MEDLINE | ID: mdl-38686613

ABSTRACT

The hairy root induction system was used to efficiently investigate gene expression and function in plant root. Cucumber is a significant vegetable crop worldwide, with shallow roots, few lateral roots, and weak root systems, resulting in low nutrient absorption and utilization efficiency. Identifying essential genes related to root development and nutrient absorption is an effective way to improve the growth and development of cucumbers. However, genetic mechanisms underlying cucumber root development have not been explored. Here, we report a novel, rapid, effective hairy root transformation system. Compared to the in vitro cotyledon transformation method, this method shortened the time needed to obtain transgenic roots by 13 days. Furthermore, we combined this root transformation method with CRISPR/Cas9 technology and validated our system by exploring the expression and function of CsMYB36, a pivotal gene associated with root development and nutrient uptake. The hairy root transformation system established in this study provides a powerful method for rapidly identifying essential genes related to root development in cucumber and other horticultural crop species. This advancement holds promise for expediting research on root biology and molecular breeding strategies, contributing to the broader understanding and improvements crop growth and development.


Subject(s)
Cucumis sativus , Plant Proteins , Plant Roots , Plants, Genetically Modified , Plant Roots/growth & development , Plant Roots/genetics , Cucumis sativus/genetics , Cucumis sativus/growth & development , Plant Proteins/genetics , Plant Proteins/metabolism , Plants, Genetically Modified/genetics , Gene Expression Regulation, Plant , Transformation, Genetic , CRISPR-Cas Systems/genetics
5.
Ying Yong Sheng Tai Xue Bao ; 35(3): 713-720, 2024 Mar 18.
Article in English | MEDLINE | ID: mdl-38646759

ABSTRACT

The problem of soil barrier caused by excessive accumulation of nitrogen is common in continuous cropping soil of facility agriculture. To investigate the modulating effects of biochar amendment on soil nitrogen transformation in greenhouse continuous cropping systems, we conducted a pot experiment with two treatments, no biochar addition (CK) and 5% biochar addition (mass ratio). We analyzed the effects of biochar addition on soil microbial community structure, abundances of genes functioning in nitrogen cycling, root growth and nitrogen metabolism-related genes expressions of cucumber seedlings. The results showed that biochar addition significantly increased plant height, root dry mass, total root length, root surface area, and root volume of cucumber seedlings. Rhizosphere environment was improved, which enhanced root nitrogen absorption by inducing the up-regulation of genes expressions related to plant nitrogen metabolism. Biochar addition significantly increased soil microbial biomass nitrogen, nitrate nitrogen, and nitrite nitrogen contents. The abundances of bacteria that involved in nitrogen metabolism, including Proteobacteria, Cyanobacteria, and Rhizobiales (soil nitrogen-fixing bacteria), were also significantly improved in the soil. The abundances of genes functioning in soil nitrification and nitrogen assimilation reduction, and the activities of enzymes involved in nitrogen metabolisms such as hydroxylamine dehydrogenase, nitronate monooxygenase, carbonic anhydrase were increased. In summary, biochar addition improved soil physicochemical properties and microbial community, and affected soil nitrogen cycling through promoting nitrification and nitrogen assimilation. Finally, nitrogen adsorption capacity and growth of cucumber plant was increased.


Subject(s)
Charcoal , Cucumis sativus , Nitrogen , Plant Roots , Seedlings , Soil , Cucumis sativus/growth & development , Cucumis sativus/metabolism , Nitrogen/metabolism , Soil/chemistry , Seedlings/growth & development , Seedlings/metabolism , Plant Roots/metabolism , Plant Roots/growth & development , Soil Microbiology , Agriculture/methods , Rhizosphere
6.
Theor Appl Genet ; 137(5): 114, 2024 Apr 28.
Article in English | MEDLINE | ID: mdl-38678513

ABSTRACT

KEY MESSAGE: Map-based cloning revealed that a mutation in a highly conserved amino acid of the CsGME gene encoding GDP-mannose 3,5-epimerase, causes the phenotype of little and wrinkled leaves in cucumbers. Leaf size is a critical determinant of plant architecture in cucumbers, yet only a few genes associated with this trait have been mapped or cloned. Here, we identified and characterized a mutant with little and wrinkled leaves, named lwl-1. Genetic analysis revealed that the phenotype of the lwl-1 was controlled by a single recessive gene. Through map-based cloning, the lwl-1 locus was narrowed down to a 12.22-kb region exclusively containing one fully annotated gene CsGME (CsaV3_2G004170). CsGME encodes GDP-mannose 3,5-epimerase, which is involved in the synthesis of ascorbic acid (ASA) and one of the components of pectin, RG-II. Whole-length sequencing of the 12.22 kb DNA fragment revealed the presence of only a non-synonymous mutation located in the sixth exon of CsGME in lwl-1, resulting in an amino acid alteration from Pro363 to Leu363. This mutation was unique among 118 inbred lines from cucumber natural populations. CsGME expression significantly reduced in various organs of lwl-1, accompanied by a significant decrease in ASA and pectin content in leaves. Both CsGME and Csgme proteins were localized to the cytoplasm. The mutant phenotype exhibited partial recovery after the application of exogenous boric acid. Silencing CsGME in cucumber through VIGS confirmed its role as the causal gene for lwl-1. Transcriptome profiling revealed that CsGME greatly affected the expression of genes related to the cell division process and cell plate formation. This study represents the first report to characterize and clone the CsGME in cucumber, indicating its crucial role in regulating leaf size and development.


Subject(s)
Carbohydrate Epimerases , Chromosome Mapping , Cucumis sativus , Plant Leaves , Ascorbic Acid/metabolism , Carbohydrate Epimerases/genetics , Carbohydrate Epimerases/metabolism , Cloning, Molecular , Cucumis sativus/genetics , Cucumis sativus/growth & development , Cucumis sativus/enzymology , Gene Expression Regulation, Plant , Genes, Plant , Genes, Recessive , Mutation , Phenotype , Plant Leaves/genetics , Plant Leaves/growth & development , Plant Proteins/genetics , Plant Proteins/metabolism
7.
J Integr Plant Biol ; 66(5): 1024-1037, 2024 May.
Article in English | MEDLINE | ID: mdl-38578173

ABSTRACT

Leaves are the main photosynthesis organ that directly determines crop yield and biomass. Dissecting the regulatory mechanism of leaf development is crucial for food security and ecosystem turn-over. Here, we identified the novel function of R2R3-MYB transcription factors CsRAXs in regulating cucumber leaf size and fruiting ability. Csrax5 single mutant exhibited enlarged leaf size and stem diameter, and Csrax1/2/5 triple mutant displayed further enlargement phenotype. Overexpression of CsRAX1 or CsRAX5 gave rise to smaller leaf and thinner stem. The fruiting ability of Csrax1/2/5 plants was significantly enhanced, while that of CsRAX5 overexpression lines was greatly weakened. Similarly, cell number and free auxin level were elevated in mutant plants while decreased in overexpression lines. Biochemical data indicated that CsRAX1/5 directly promoted the expression of auxin glucosyltransferase gene CsUGT74E2. Therefore, our data suggested that CsRAXs function as repressors for leaf size development by promoting auxin glycosylation to decrease free auxin level and cell division in cucumber. Our findings provide new gene targets for cucumber breeding with increased leaf size and crop yield.


Subject(s)
Cucumis sativus , Gene Expression Regulation, Plant , Indoleacetic Acids , Plant Leaves , Plant Proteins , Indoleacetic Acids/metabolism , Cucumis sativus/genetics , Cucumis sativus/growth & development , Cucumis sativus/metabolism , Plant Leaves/metabolism , Plant Proteins/metabolism , Plant Proteins/genetics , Glycosylation , Transcription Factors/metabolism , Transcription Factors/genetics , Fruit/metabolism , Fruit/growth & development , Fruit/genetics , Mutation/genetics
8.
Can J Microbiol ; 70(5): 150-162, 2024 May 01.
Article in English | MEDLINE | ID: mdl-38427979

ABSTRACT

This study characterizes seedling exudates of peas, tomatoes, and cucumbers at the level of chemical composition and functionality. A plant experiment confirmed that Rhizobium leguminosarum bv. viciae 3841 enhanced growth of pea shoots, while Azospirillum brasilense Sp7 supported growth of pea, tomato, and cucumber roots. Chemical analysis of exudates after 1 day of seedling incubation in water yielded differences between the exudates of the three plants. Most remarkably, cucumber seedling exudate did not contain detectable sugars. All exudates contained amino acids, nucleobases/nucleosides, and organic acids, among other compounds. Cucumber seedling exudate contained reduced glutathione. Migration on semi solid agar plates containing individual exudate compounds as putative chemoattractants revealed that R. leguminosarum bv. viciae was more selective than A. brasilense, which migrated towards any of the compounds tested. Migration on semi solid agar plates containing 1:1 dilutions of seedling exudate was observed for each of the combinations of bacteria and exudates tested. Likewise, R. leguminosarum bv. viciae and A. brasilense grew on each of the three seedling exudates, though at varying growth rates. We conclude that the seedling exudates of peas, tomatoes, and cucumbers contain everything that is needed for their symbiotic bacteria to migrate and grow on.


Subject(s)
Azospirillum brasilense , Cucumis sativus , Pisum sativum , Rhizobium leguminosarum , Seedlings , Solanum lycopersicum , Solanum lycopersicum/microbiology , Solanum lycopersicum/growth & development , Cucumis sativus/microbiology , Cucumis sativus/growth & development , Seedlings/growth & development , Seedlings/microbiology , Rhizobium leguminosarum/growth & development , Rhizobium leguminosarum/metabolism , Azospirillum brasilense/growth & development , Azospirillum brasilense/metabolism , Pisum sativum/microbiology , Pisum sativum/growth & development , Plant Roots/microbiology , Plant Roots/growth & development , Chemotaxis , Plant Exudates/chemistry , Plant Exudates/metabolism
9.
Plant Cell ; 36(6): 2272-2288, 2024 May 29.
Article in English | MEDLINE | ID: mdl-38421027

ABSTRACT

A number of cis-regulatory elements (CREs) conserved during evolution have been found to be responsible for phenotypic novelty and variation. Cucurbit crops such as cucumber (Cucumis sativus), watermelon (Citrullus lanatus), melon (Cucumis melo), and squash (Cucurbita maxima) develop fruits from an inferior ovary and share some similar biological processes during fruit development. Whether conserved regulatory sequences play critical roles in fruit development of cucurbit crops remains to be explored. In six well-studied cucurbit species, we identified 392,438 conserved noncoding sequences (CNSs), including 82,756 that are specific to cucurbits, by comparative genomics. Genome-wide profiling of accessible chromatin regions (ACRs) and gene expression patterns mapped 20,865 to 43,204 ACRs and their potential target genes for two fruit tissues at two key developmental stages in six cucurbits. Integrated analysis of CNSs and ACRs revealed 4,431 syntenic orthologous CNSs, including 1,687 cucurbit-specific CNSs that overlap with ACRs that are present in all six cucurbit crops and that may regulate the expression of 757 adjacent orthologous genes. CRISPR mutations targeting two CNSs present in the 1,687 cucurbit-specific sequences resulted in substantially altered fruit shape and gene expression patterns of adjacent NAC1 (NAM, ATAF1/2, and CUC2) and EXT-like (EXTENSIN-like) genes, validating the regulatory roles of these CNSs in fruit development. These results not only provide a number of target CREs for cucurbit crop improvement, but also provide insight into the roles of CREs in plant biology and during evolution.


Subject(s)
Conserved Sequence , Fruit , Gene Expression Regulation, Plant , Fruit/genetics , Fruit/growth & development , Regulatory Sequences, Nucleic Acid/genetics , Crops, Agricultural/genetics , Crops, Agricultural/growth & development , Cucurbita/genetics , Cucurbita/growth & development , Citrullus/genetics , Citrullus/growth & development , Citrullus/metabolism , Cucumis sativus/genetics , Cucumis sativus/growth & development , Plant Proteins/genetics , Plant Proteins/metabolism , Genome, Plant/genetics
10.
Plant J ; 118(3): 696-716, 2024 May.
Article in English | MEDLINE | ID: mdl-38193347

ABSTRACT

The root system is important for the absorption of water and nutrients by plants. Cultivating and selecting a root system architecture (RSA) with good adaptability and ultrahigh productivity have become the primary goals of agricultural improvement. Exploring the correlation between the RSA and crop yield is important for cultivating crop varieties with high-stress resistance and productivity. In this study, 277 cucumber varieties were collected for root system image analysis and yield using germination plates and greenhouse cultivation. Deep learning tools were used to train ResNet50 and U-Net models for image classification and segmentation of seedlings and to perform quality inspection and productivity prediction of cucumber seedling root system images. The results showed that U-Net can automatically extract cucumber root systems with high quality (F1_score ≥ 0.95), and the trained ResNet50 can predict cucumber yield grade through seedling root system image, with the highest F1_score reaching 0.86 using 10-day-old seedlings. The root angle had the strongest correlation with yield, and the shallow- and steep-angle frequencies had significant positive and negative correlations with yield, respectively. RSA and nutrient absorption jointly affected the production capacity of cucumber plants. The germination plate planting method and automated root system segmentation model used in this study are convenient for high-throughput phenotypic (HTP) research on root systems. Moreover, using seedling root system images to predict yield grade provides a new method for rapidly breeding high-yield RSA in crops such as cucumbers.


Subject(s)
Cucumis sativus , Deep Learning , Plant Roots , Seedlings , Cucumis sativus/growth & development , Cucumis sativus/physiology , Plant Roots/growth & development , Plant Roots/anatomy & histology , Plant Roots/physiology , Seedlings/growth & development , Seedlings/physiology , Image Processing, Computer-Assisted/methods , Crops, Agricultural/growth & development
11.
Plant Physiol ; 195(1): 552-565, 2024 Apr 30.
Article in English | MEDLINE | ID: mdl-38243383

ABSTRACT

Plant trichome development is influenced by diverse developmental and environmental signals, but the molecular mechanisms involved are not well understood in most plant species. Fruit spines (trichomes) are an important trait in cucumber (Cucumis sativus L.), as they affect both fruit smoothness and commercial quality. Spine Base Size1 (CsSBS1) has been identified as essential for regulating fruit spine size in cucumber. Here, we discovered that CsSBS1 controls a season-dependent phenotype of spine base size in wild-type plants. Decreased light intensity led to reduced expression of CsSBS1 and smaller spine base size in wild-type plants, but not in the mutants with CsSBS1 deletion. Additionally, knockout of CsSBS1 resulted in smaller fruit spine base size and eliminated the light-induced expansion of spines. Overexpression of CsSBS1 increased spine base size and rescued the decrease in spine base size under low light conditions. Further analysis revealed that ELONGATED HYPOTCOTYL5 (HY5), a major transcription factor involved in light signaling pathways, directly binds to the promoter of CsSBS1 and activates its expression. Knockout of CsHY5 led to smaller fruit spine base size and abolished the light-induced expansion of spines. Taken together, our study findings have clarified a CsHY5-CsSBS1 regulatory module that mediates light-regulated spine expansion in cucumber. This finding offers a strategy for cucumber breeders to develop fruit with stable appearance quality under changing light conditions.


Subject(s)
Cucumis sativus , Gene Expression Regulation, Plant , Light , Plant Proteins , Cucumis sativus/genetics , Cucumis sativus/growth & development , Cucumis sativus/radiation effects , Plant Proteins/genetics , Plant Proteins/metabolism , Fruit/genetics , Fruit/growth & development , Trichomes/genetics , Trichomes/growth & development , Transcription Factors/metabolism , Transcription Factors/genetics , Phenotype , Promoter Regions, Genetic/genetics
12.
Plant Biotechnol J ; 22(6): 1724-1739, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38261466

ABSTRACT

Increased planting densities boost crop yields. A compact plant architecture facilitates dense planting. However, the mechanisms regulating compact plant architecture in cucurbits remain unclear. In this study, we identified a cucumber (Cucumis sativus) compact plant architecture (cpa1) mutant from an ethyl methane sulfonate (EMS)-mutagenized library that exhibited distinctive phenotypic traits, including reduced leaf petiole angle and leaf size. The candidate mutation causes a premature stop codon in CsaV3_1G036420, which shares similarity to Arabidopsis HOOKLESS 1 (HLS1) encoding putative histone N-acetyltransferase (HAT) protein and was named CsHLS1. Consistent with the mutant phenotype, CsHLS1 was predominantly expressed in leaf petiole bases and leaves. Constitutive overexpressing CsHLS1 in cpa1 restored the wild-type plant architecture. Knockout of CsHLS1 resulted in reduces leaf petiole angle and leaf size and as well as decreased acetylation levels. Furthermore, CsHLS1 directly interacted with CsSCL28 and negatively regulated compact plant architecture in cucumber. Importantly, CsHLS1 knockout increased the photosynthesis rate and leaf nitrogen in cucumbers, thereby maintaining cucumber yield at normal density. Overall, our research provides valuable genetic breeding resource and gene target for creating a compact plant architecture for dense cucumber planting.


Subject(s)
Cucumis sativus , Plant Leaves , Plant Proteins , Cucumis sativus/genetics , Cucumis sativus/growth & development , Cucumis sativus/anatomy & histology , Cucumis sativus/metabolism , Plant Proteins/genetics , Plant Proteins/metabolism , Plant Leaves/genetics , Plant Leaves/growth & development , Plant Leaves/anatomy & histology , Plant Leaves/metabolism , Gene Expression Regulation, Plant , Photosynthesis/genetics , Mutation , Histone Acetyltransferases/genetics , Histone Acetyltransferases/metabolism
13.
Plant Sci ; 317: 110995, 2022 Apr.
Article in English | MEDLINE | ID: mdl-35193752

ABSTRACT

Cucumber is an economically important crop cultivated worldwide. Gibberellins (GAs) play important roles in the development of lateral roots (LRs), which are critical for plant stress tolerance and productivity. Therefore, it is of great importance for cucumber production to study the role of GAs in LR development. Here, the results showed that GAs regulated cucumber LR development in a concentration-dependent manner. Treatment with 1, 10, 50 and 100 µM GA3 significantly increased secondary root length, tertiary root number and length. Of these, 50 µM GA3 treatment had strong effects on increasing root dry weight and the root/shoot dry weight ratio. Pairwise comparisons identified 417 down-regulated genes enriched for GA metabolism-related processes and 447 up-regulated genes enriched for cell wall metabolism-related processes in GA3-treated roots. A total of 3523 non-redundant DEGs were identified in our RNA-Seq data through pairwise comparisons and linear factorial modeling. Of these, most of the genes involved in auxin and cell wall metabolisms were up-regulated in GA3-treated roots. Our findings not only shed light on LR regulation mediated by GA but also offer an important resource for functional studies of candidate genes putatively involved in the regulation of LR development in cucumber and other crops.


Subject(s)
Cell Wall , Cucumis sativus , Gibberellins , Indoleacetic Acids , Plant Roots/growth & development , Cell Wall/metabolism , Cucumis sativus/growth & development , Gene Expression Regulation, Plant , Gibberellins/metabolism , Indoleacetic Acids/metabolism
14.
Nat Commun ; 13(1): 682, 2022 02 03.
Article in English | MEDLINE | ID: mdl-35115520

ABSTRACT

Structural variants (SVs) represent a major source of genetic diversity and are related to numerous agronomic traits and evolutionary events; however, their comprehensive identification and characterization in cucumber (Cucumis sativus L.) have been hindered by the lack of a high-quality pan-genome. Here, we report a graph-based cucumber pan-genome by analyzing twelve chromosome-scale genome assemblies. Genotyping of seven large chromosomal rearrangements based on the pan-genome provides useful information for use of wild accessions in breeding and genetic studies. A total of ~4.3 million genetic variants including 56,214 SVs are identified leveraging the chromosome-level assemblies. The pan-genome graph integrating both variant information and reference genome sequences aids the identification of SVs associated with agronomic traits, including warty fruits, flowering times and root growth, and enhances the understanding of cucumber trait evolution. The graph-based cucumber pan-genome and the identified genetic variants provide rich resources for future biological research and genomics-assisted breeding.


Subject(s)
Cucumis sativus/genetics , Domestication , Genetic Variation , Genome, Plant/genetics , Genomics/methods , Quantitative Trait Loci/genetics , Chromosomes, Plant/genetics , Cucumis sativus/classification , Cucumis sativus/growth & development , DNA, Plant/chemistry , DNA, Plant/genetics , Gene Expression Regulation, Plant , Genome-Wide Association Study/methods , Genotype , INDEL Mutation , Phylogeny , Polymorphism, Single Nucleotide , Reverse Transcriptase Polymerase Chain Reaction , Sequence Analysis, DNA/methods , Species Specificity , Synteny
15.
BMC Plant Biol ; 22(1): 30, 2022 Jan 13.
Article in English | MEDLINE | ID: mdl-35027005

ABSTRACT

Strigolactone is a newly discovered type of plant hormone that has multiple roles in modulating plant responses to abiotic stress. Herein, we aimed to investigate the effects of exogenous GR24 (a synthetic analogue of strigolactone) on plant growth, photosynthetic characteristics, carbohydrate levels, endogenous strigolactone content and antioxidant metabolism in cucumber seedlings under low light stress. The results showed that the application of 10 µM GR24 can increase the photosynthetic efficiency and plant biomass of low light-stressed cucumber seedlings. GR24 increased the accumulation of carbohydrates and the synthesis of sucrose-related enzyme activities, enhanced antioxidant enzyme activities and antioxidant substance contents, and reduced the levels of H2O2 and MDA in cucumber seedlings under low light stress. These results indicate that exogenous GR24 might alleviate low light stress-induced growth inhibition by regulating the assimilation of carbon and antioxidants and endogenous strigolactone contents, thereby enhancing the tolerance of cucumber seedlings to low light stress.


Subject(s)
Adaptation, Ocular/drug effects , Cucumis sativus/drug effects , Cucumis sativus/growth & development , Cucumis sativus/metabolism , Heterocyclic Compounds, 3-Ring/metabolism , Lactones/metabolism , Crops, Agricultural/drug effects , Crops, Agricultural/growth & development , Crops, Agricultural/metabolism
16.
Sci Rep ; 12(1): 852, 2022 01 17.
Article in English | MEDLINE | ID: mdl-35039577

ABSTRACT

Light is one of the most important limiting factors for photosynthesis and the production of plants, especially in the regions where natural environmental conditions do not provide sufficient sunlight, and there is a great dependence on artificial lighting to grow plants and produce food. The influence of light intensity, quality, and photoperiod on photosynthetic pigments content and some biochemical and growth traits of cucumber seedlings grown under controlled conditions was investigated. An orthogonal design based on a combination of different light irradiances, ratio of LEDs and photoperiods was used. Treaments consisted of three light irradiance regimes (80, 100, and 150 µmol m-2 s-1) provided by light-emitting diodes (LEDs) of different ratios of red and blue (R:B) (30:70, 50:50, and 70:30) and three different photoperiods (10/14, 12/12, and 14/10 h). The white light was used as a control/reference. Plant height, hypocotyl length, stem diameter, leaf area, and soluble sugar content were highest when exposed to LM9 (150 µmol m-2 s-1; R70:B30; 12/12 h) light mode, while the lowest values for the above parameters were obtained under LM1 (80 µmol m-2 s-1; R30:B70; 10/14 h). Higher pigments contents (chlorophyll a, chlorophyll b, and carotenoid) were obtained when light regime LM9 (150 µmol m-2 s-1; R70:B30; 12/12 h) was applied. In general, cucumber seedlings grown under the LM9 regime showed a significant increase in growth as well as photosynthetic capacity. It seems that the content of photosynthetic pigments is the key factor responsible for the performance of cucumber seedlings grown under different lighting modes, compared to other traits studied. We recommend monitoring the content of chlorophyll a, b, and their ratio value when studying the light requirement of cucumber plants.


Subject(s)
Cucumis sativus/growth & development , Cucumis sativus/radiation effects , Light , Lighting/methods , Seedlings/growth & development , Seedlings/radiation effects , Chlorophyll/metabolism , Chlorophyll A/metabolism , Cucumis sativus/metabolism , Dose-Response Relationship, Radiation , Photoperiod , Photosynthesis/radiation effects , Pigments, Biological/metabolism , Seedlings/metabolism
17.
Plant Physiol ; 188(1): 81-96, 2022 01 20.
Article in English | MEDLINE | ID: mdl-34662407

ABSTRACT

Bicontinuous membranes in cell organelles epitomize nature's ability to create complex functional nanostructures. Like their synthetic counterparts, these membranes are characterized by continuous membrane sheets draped onto topologically complex saddle-shaped surfaces with a periodic network-like structure. Their structure sizes, (around 50-500 nm), and fluid nature make transmission electron microscopy (TEM) the analysis method of choice to decipher their nanostructural features. Here we present a tool, Surface Projection Image Recognition Environment (SPIRE), to identify bicontinuous structures from TEM sections through interactive identification by comparison to mathematical "nodal surface" models. The prolamellar body (PLB) of plant etioplasts is a bicontinuous membrane structure with a key physiological role in chloroplast biogenesis. However, the determination of its spatial structural features has been held back by the lack of tools enabling the identification and quantitative analysis of symmetric membrane conformations. Using our SPIRE tool, we achieved a robust identification of the bicontinuous diamond surface as the dominant PLB geometry in angiosperm etioplasts in contrast to earlier long-standing assertions in the literature. Our data also provide insights into membrane storage capacities of PLBs with different volume proportions and hint at the limited role of a plastid ribosome localization directly inside the PLB grid for its proper functioning. This represents an important step in understanding their as yet elusive structure-function relationship.


Subject(s)
Cell Membrane/physiology , Cell Membrane/ultrastructure , Crops, Agricultural/growth & development , Crops, Agricultural/ultrastructure , Plastids/physiology , Plastids/ultrastructure , Avena/growth & development , Avena/ultrastructure , Cucumis sativus/growth & development , Cucumis sativus/ultrastructure , Microscopy, Electron, Transmission/methods , Models, Theoretical , Pisum sativum/growth & development , Pisum sativum/ultrastructure , Phaseolus/growth & development , Phaseolus/ultrastructure , Software , Zea mays/growth & development , Zea mays/ultrastructure
18.
Int J Mol Sci ; 22(24)2021 Dec 08.
Article in English | MEDLINE | ID: mdl-34948028

ABSTRACT

As an important gas signaling molecule, hydrogen sulfide (H2S) plays a crucial role in regulating cold tolerance. H2S cooperates with phytohormones such as abscisic acid, ethylene, and salicylic acid to regulate the plant stress response. However, the synergistic regulation of H2S and auxin in the plant response to cold stress has not been reported. This study showed that sodium hydrosulfide (NaHS, an H2S donor) treatment enhanced the cold stress tolerance of cucumber seedlings and increased the level of auxin. CsARF5, a cucumber auxin response factor (ARF) gene, was isolated, and its role in regulating H2S-mediated cold stress tolerance was described. Transgenic cucumber leaves overexpressing CsARF5 were obtained. Physiological analysis indicated that overexpression of CsARF5 enhanced the cold stress tolerance of cucumber and the regulation of the cold stress response by CsARF5 depends on H2S. In addition, molecular assays showed that CsARF5 modulated cold stress response by directly activating the expression of the dehydration-responsive element-binding (DREB)/C-repeat binding factor (CBF) gene CsDREB3, which was identified as a positive regulator of cold stress. Taken together, the above results suggest that CsARF5 plays an important role in H2S-mediated cold stress in cucumber. These results shed light on the molecular mechanism by which H2S regulates cold stress response by mediating auxin signaling; this will provide insights for further studies on the molecular mechanism by which H2S regulates cold stress. The aim of this study was to explore the molecular mechanism of H2S regulating cold tolerance of cucumber seedlings and provide a theoretical basis for the further study of cucumber cultivation and environmental adaptability technology in winter.


Subject(s)
Cucumis sativus/growth & development , DNA-Binding Proteins/genetics , DNA-Binding Proteins/metabolism , Sulfides/pharmacology , Cold-Shock Response/drug effects , Cucumis sativus/drug effects , Cucumis sativus/genetics , Cucumis sativus/metabolism , Gene Expression Profiling , Gene Expression Regulation, Plant/drug effects , Hydrogen Sulfide/metabolism , Indoleacetic Acids/metabolism , Plant Proteins/genetics , Plant Proteins/metabolism , Plants, Genetically Modified/drug effects , Plants, Genetically Modified/growth & development , Plants, Genetically Modified/metabolism
19.
Plant Physiol ; 187(1): 378-395, 2021 09 04.
Article in English | MEDLINE | ID: mdl-34618138

ABSTRACT

Ultraviolet (UV) light induces a stocky phenotype in many plant species. In this study, we investigate this effect with regard to specific UV wavebands (UV-A or UV-B) and the cause for this dwarfing. UV-A- or UV-B-enrichment of growth light both resulted in a smaller cucumber (Cucumis sativus L.) phenotype, exhibiting decreased stem and petiole lengths and leaf area (LA). Effects were larger in plants grown in UV-B- than in UV-A-enriched light. In plants grown in UV-A-enriched light, decreases in stem and petiole lengths were similar independent of tissue age. In the presence of UV-B radiation, stems and petioles were progressively shorter the younger the tissue. Also, plants grown under UV-A-enriched light significantly reallocated photosynthates from shoot to root and also had thicker leaves with decreased specific LA. Our data therefore imply different morphological plant regulatory mechanisms under UV-A and UV-B radiation. There was no evidence of stress in the UV-exposed plants, neither in photosynthetic parameters, total chlorophyll content, or in accumulation of damaged DNA (cyclobutane pyrimidine dimers). The abscisic acid content of the plants also was consistent with non-stress conditions. Parameters such as total leaf antioxidant activity, leaf adaxial epidermal flavonol content and foliar total UV-absorbing pigment levels revealed successful UV acclimation of the plants. Thus, the UV-induced dwarfing, which displayed different phenotypes depending on UV wavelengths, occurred in healthy cucumber plants, implying a regulatory adjustment as part of the UV acclimation processes involving UV-A and/or UV-B photoreceptors.


Subject(s)
Cucumis sativus/radiation effects , Stress, Physiological , Ultraviolet Rays , Cucumis sativus/anatomy & histology , Cucumis sativus/growth & development
20.
BMC Plant Biol ; 21(1): 454, 2021 Oct 06.
Article in English | MEDLINE | ID: mdl-34615487

ABSTRACT

BACKGROUND: Photosynthesis in the green leafless blade tissues or organs of plants has been studied in some plants, but the photosynthetic characteristics of stems and petioles are poorly understood. Cucurbitaceous plants are climbing plants that have substantial stem and petiole biomass. Understanding the photosynthetic contribution of cucumber stems and petioles to their growth and the underlying molecular mechanisms are important for the regulating of growth in cucumber production. RESULTS: In this study, the photosynthetic capacity of cucumber stems and petioles were determined by 14CO2 uptake. The total carbon fixed by the stems and petioles was approximately 4% of that fixed by one leaf blade in the cucumber seedling stage, while the proportion of the carbon accumulated in the stems and petioles that redistributed to sink organs (roots and shoot apexes) obviously increased under leafless conditions. The photosynthetic properties of cucumber stems and petioles were studied using a combination of electron microscopy and isotope tracers to compare these properties of stems and petioles with those of leaf blade using two genotypes of cucumber (dark green and light green). Compared with those of the leaf blades, the chlorophyll contents of the cucumber stems and petioles were lower, and the stems and petioles had lower chloroplast numbers and lower stoma numbers but higher thylakoid grana lamella numbers and larger stoma sizes. The Chl a/b ratios were also decreased in the petioles and stems compared with those in the leaf blades. The total photosynthetic rates of the stems and petioles were equivalent to 6 ~ 8% of that of one leaf blade, but the respiration rates were similar in all the three organs, with an almost net 0 photosynthetic rate in the stems and petioles. Transcriptome analysis showed that compared with the leaf blades, the stems and petioles has significantly different gene expression levels in photosynthesis, porphyrin and chlorophyll metabolism; photosynthetic antenna proteins; and carbon fixation. PEPC enzyme activities were higher in the stems and petioles than in the leaf blades, suggesting that the photosynthetic and respiratory mechanisms in stems and petioles are different from those in leaf blade, and these results are consistent with the gene expression data. CONCLUSIONS: In this study, we confirmed the photosynthetic contribution to the growth of cucumber stems and petioles, and showed their similar photosynthetic patterns in the terms of anatomy, molecular biology and physiology, which were different from those of cucumber leaf blades.


Subject(s)
Cucumis sativus/growth & development , Cucumis sativus/genetics , Photosynthesis/genetics , Plant Leaves/growth & development , Plant Leaves/genetics , Plant Stems/growth & development , Plant Stems/genetics , Crops, Agricultural/genetics , Crops, Agricultural/growth & development , Cucumis sativus/metabolism , Genetic Variation , Genotype
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