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1.
Virchows Arch ; 477(4): 581-592, 2020 Oct.
Article in English | MEDLINE | ID: mdl-32383006

ABSTRACT

Intraductal carcinoma (IC) is a rare salivary gland tumor with low- to intermediate-grade cytological features. It is further classified into intercalated duct type and apocrine type based on its distinct histologic and immunohistochemical expression. Conventional salivary duct carcinoma (SDC) is an aggressive carcinoma with high-grade features and is usually associated with poor prognosis. In this study, immunohistochemistry and mutation analyses (including HRAS/PIK3CA mutations, RET rearrangement, and human epidermal growth factor receptor 2 [HER2] amplification) of 9 ICs (including 3 pure ICs, 6 ICs with invasive carcinoma) and 24 conventional SDCs were performed and the results were compared. Four intercalated duct-type cases were positive for SOX10 and S100 and negative for AR; five apocrine-type cases showed opposite results. All five apocrine-type cases had cysts with relatively circumscribed tumor borders and morphologically mimicking breast low-grade ductal carcinoma in situ or papillary carcinoma. RET fusion is detected in half of the 4 intercalated duct-type IC but not in the apocrine-type or conventional SDC. HER2 amplification was only observed in conventional SDC. The monoclonal antibody (clone RBT-NRAS) against NRAS Q61R is a sensitive and specific marker used for detecting HRAS Q61R mutation in the salivary gland tumors. The apocrine-type IC had different cytological grades, distinct tumor growth patterns, and no evidence of low- to high-grade transition, suggesting that apocrine-type IC should be distinguished from apocrine SDC with an in situ component.


Subject(s)
Biomarkers, Tumor , Carcinoma, Ductal , Cystadenocarcinoma , Salivary Gland Neoplasms , Adult , Aged , Aged, 80 and over , Biomarkers, Tumor/analysis , Biomarkers, Tumor/genetics , Carcinoma, Ductal/chemistry , Carcinoma, Ductal/genetics , Carcinoma, Ductal/pathology , Cell Proliferation , Cystadenocarcinoma/chemistry , Cystadenocarcinoma/genetics , Cystadenocarcinoma/pathology , DNA Mutational Analysis , Diagnosis, Differential , Female , Gene Amplification , Gene Rearrangement , Genetic Predisposition to Disease , Humans , Immunohistochemistry , In Situ Hybridization, Fluorescence , Male , Middle Aged , Mutation , Neoplasm Grading , Phenotype , Predictive Value of Tests , Salivary Gland Neoplasms/chemistry , Salivary Gland Neoplasms/genetics , Salivary Gland Neoplasms/pathology
2.
Histopathology ; 76(3): 411-422, 2020 Feb.
Article in English | MEDLINE | ID: mdl-31505033

ABSTRACT

AIMS: Minor salivary gland tumours showing a predominant papillary-cystic structure are rare, and constitute a mixture of various types of neoplasm; thus, the histopathological assessment of these tumours poses a significant diagnostic challenge. We aimed to delineate the histological characteristics of these tumours and further mutational aspects with a particular focus on sialadenoma papilliferum (SP) and intraductal papillary mucinous neoplasm (IPMN). METHODS AND RESULTS: We retrieved 28 papillary-cystic tumours of the minor salivary glands, and performed histological re-evaluation and mutation analyses of several key oncogenes. The histological classifications were as follows: SP (n = 10), SP-like intraductal papillary tumour (SP-IPT) (n = 2), IPMN (n = 9), intraductal papilloma, cystadenoma, and cystadenocarcinoma (two, three and two respectively). Whereas SP typically consisted of a combination of exophytic squamous epithelium and endophytic intraductal papillary infoldings, SP-IPT lacked the exophytic component. SP and SP-IPT frequently harboured BRAF V600E mutations (75.0%), which were identified in both squamous and ductal components. IPMN was characterised by a well-demarcated cystic lesion filled exclusively with a papillary proliferation of mucinous cells and a high rate of AKT1 E17K mutations (88.9%). Intraductal papillomas were unilocular cystic lesions with intraluminal papillary growth of bland columnar cells. In contrast, both cystadenomas and cystadenocarcinomas showed a multicystic appearance with a papillary configuration. Cystadenocarcinomas invaded the surrounding tissue and were composed of markedly atypical tumour cells. CONCLUSION: The appropriate interpretation of histological findings and specific genetic alterations (e.g. BRAF V600E and AKT1 E17K in SP and IPMN) would be useful for the correct diagnosis of minor salivary gland papillary-cystic tumours.


Subject(s)
Cystadenocarcinoma/genetics , Cystadenoma/genetics , Papilloma, Intraductal/genetics , Proto-Oncogene Proteins B-raf/genetics , Proto-Oncogene Proteins c-akt/genetics , Salivary Gland Neoplasms/genetics , Adult , Aged , Aged, 80 and over , Amino Acid Substitution , Cystadenocarcinoma/classification , Cystadenocarcinoma/diagnosis , Cystadenocarcinoma/pathology , Cystadenoma/classification , Cystadenoma/diagnosis , Cystadenoma/pathology , Female , Humans , Immunohistochemistry , Male , Middle Aged , Mutation , Papilloma, Intraductal/classification , Papilloma, Intraductal/diagnosis , Papilloma, Intraductal/pathology , Salivary Gland Neoplasms/classification , Salivary Gland Neoplasms/diagnosis , Salivary Gland Neoplasms/pathology , Salivary Glands, Minor/pathology
3.
PLoS One ; 14(1): e0210968, 2019.
Article in English | MEDLINE | ID: mdl-30682201

ABSTRACT

Salivary gland tumors (SGTs) are rare tumors of the head and neck with different clinical behavior. Preoperative diagnosis, based on instrumental and cytologic examinations, is crucial for their correct management. The identification of molecular markers might improve the accuracy of pre-surgical diagnosis helping to plan the proper treatment especially when a definitive diagnosis based only on cytomorphology cannot be achieved. miRNAs appear to be new promising biomarkers in the diagnosis and prognosis of cancer. Studies concerning the useful of miRNA expression in clinical decision-making regarding SGTs remain limited and controversial.The expression of a panel of 798 miRNAs was investigated using Nanostring technology in 14 patients with malignant SGTs (6 mucoepidermoid carcinomas, 4 adenoid cystic carcinomas, 1 acinic cell carcinoma, 1 ductal carcinoma, 1 cystadenocarcinoma and 1 adenocarcinoma) and in 10 patients with benign SGTs (pleomorphic adenomas). The DNA Intelligent Analysis (DIANA)-miRPath v3.0 software was used to determinate the miRNA regulatory roles and to identify the controlled significant Kyoto Encyclopedia of Genes and Genomes (KEGG) molecular pathways. Forty six miRNAs were differentially expressed (False Discovery Rate-FDR<0.05) between malignant and benign SGTs. DIANA miRPath software revealed enriched pathways involved in cancer processes as well as tumorigenesis, cell proliferation, cell growth and survival, tumor suppressor expression, angiogenesis and tumor progression. Interestingly, clustering analysis showed that this signature of 46 miRNAs is able to differentiate the two analyzed groups. We found a correlation between histological diagnosis (benign or malignant) and miRNA expression profile.The molecular signature identified in this study might become an important preoperative diagnostic tool.


Subject(s)
MicroRNAs/genetics , RNA, Neoplasm/genetics , Salivary Gland Neoplasms/diagnosis , Salivary Gland Neoplasms/genetics , Adenocarcinoma/diagnosis , Adenocarcinoma/genetics , Adenocarcinoma/metabolism , Adenoma, Pleomorphic/diagnosis , Adenoma, Pleomorphic/genetics , Adenoma, Pleomorphic/metabolism , Adult , Aged , Aged, 80 and over , Biomarkers, Tumor/genetics , Biomarkers, Tumor/metabolism , Carcinoma, Acinar Cell/diagnosis , Carcinoma, Acinar Cell/genetics , Carcinoma, Acinar Cell/metabolism , Carcinoma, Adenoid Cystic/diagnosis , Carcinoma, Adenoid Cystic/genetics , Carcinoma, Adenoid Cystic/metabolism , Carcinoma, Ductal/diagnosis , Carcinoma, Ductal/genetics , Carcinoma, Ductal/metabolism , Carcinoma, Mucoepidermoid/diagnosis , Carcinoma, Mucoepidermoid/genetics , Carcinoma, Mucoepidermoid/metabolism , Cluster Analysis , Cystadenocarcinoma/diagnosis , Cystadenocarcinoma/genetics , Cystadenocarcinoma/metabolism , Diagnosis, Differential , Female , Genetic Markers , Humans , Male , MicroRNAs/metabolism , Middle Aged , RNA, Neoplasm/metabolism , Salivary Gland Neoplasms/metabolism , Transcriptome
4.
Am J Surg Pathol ; 42(4): 442-452, 2018 04.
Article in English | MEDLINE | ID: mdl-29443014

ABSTRACT

Intraductal carcinoma (IC) is the World Health Organization designation for lesions previously called low-grade cribriform cystadenocarcinoma. The relationship of IC to salivary duct carcinoma (SDC) is controversial, but currently these are considered distinct entities. It is hypothesized that IC and SDC should have different genomic signatures that may be identifiable by next-generation sequencing. A total of 23 ICs were identified: 14 pure IC and 9 invasive carcinomas with an intraductal component. Five invasive carcinomas were subjected to next-generation paired-end RNA sequencing. Data analysis was performed using FusionSeq and Mutation detection algorithms (MuTect and VarScan) for variant callers. Gene fusion candidates were validated by fluorescence in situ hybridization and reverse transcription polymerase chain reaction, and mutations by Sanger sequencing. Among the 9 invasive carcinomas, all except 1 were apocrine SDCs with an intraductal component. The remaining case showed typical intercalated duct type IC with invasive adenocarcinoma. The 14 pure ICs had typical intercalated duct features (2 showed hybrid intercalated/apocrine features). RNA sequencing predicted a NCOA4-RET fusion, confirmed by reverse transcription polymerase chain reaction, in the intercalated duct type IC invasive component. Six additional cases of pure IC showed RET rearrangement by fluorescence in situ hybridization (7/15=47%). No apocrine carcinomas showed RET rearrangement. RNA sequencing and Sanger sequencing identified PIK3CA (p.E545K/p.H1047R) and/or HRAS (p.Q61R) hotspot mutations in 6 of 8 (75%) apocrine carcinomas. In conclusion, 2 distinctive types of intraductal lesions are emerging based on molecular analysis. Classic intercalated type ICs commonly harbor fusions involving RET and rarely show widespread invasion. Apocrine intraductal lesions are typically associated with widespread invasion with no pure examples and show similar PIK3CA and HRAS mutations to SDC.


Subject(s)
Biomarkers, Tumor/genetics , Carcinoma, Intraductal, Noninfiltrating/genetics , Cystadenocarcinoma/genetics , Gene Rearrangement , Proto-Oncogene Proteins c-ret/genetics , Salivary Gland Neoplasms/genetics , Adult , Aged , Aged, 80 and over , Biopsy , Carcinoma, Intraductal, Noninfiltrating/pathology , Cystadenocarcinoma/pathology , DNA Mutational Analysis , Female , Gene Fusion , Genetic Predisposition to Disease , Humans , In Situ Hybridization, Fluorescence , Male , Middle Aged , Mutation , Neoplasm Grading , Phenotype , Salivary Gland Neoplasms/pathology , Sequence Analysis, RNA
5.
J Coll Physicians Surg Pak ; 27(9): 544-546, 2017 Sep.
Article in English | MEDLINE | ID: mdl-29017668

ABSTRACT

OBJECTIVE: To detect the frequency of Her-2/neu protein expression in epithelial ovarian cancers by immunohistochemistry. STUDY DESIGN: Descriptive cross-sectional study. PLACE AND DURATION OF STUDY: Department of Pathology, King Edward Medical University, Lahore, from July 2014 to May 2015. METHODOLOGY: Fifty-six cases diagnosed as epithelial ovarian cancer on histopathology were included in this study. Immunohistochemistry was performed to observe the pattern of HER2/neu protein expression in these cases. Association with age was determined by Chi-square test with significance at p<0.05. RESULTS: Out of these 56 cases, 38 (67.9%) were serous cystadenocarcinomas, 11 (19.6%) were endometrioid adenocarcinomas, 6 (10.7%) were mucinous cystadenocarcinomas and 1 (1.8%) was non-Brenner transitional cell carcinoma. The mean age of patients was 49.61 ±13.20 years with minimum and maximum ages of 21 years and 80 years, correspondingly. Twentyone (37.5%) out of 56 patients were found to overexpress Her-2/neu protein. CONCLUSION: Her-2/neu protein overexpression was observed in 21 (37.5%) patients. No statistically significant association was seen between age and Her-2/neu protein overexpression.


Subject(s)
Cystadenocarcinoma/metabolism , Gene Expression Regulation, Neoplastic , Immunohistochemistry/methods , Neoplasms, Glandular and Epithelial/metabolism , Ovarian Neoplasms/metabolism , Receptor, ErbB-2/metabolism , Adult , Aged , Biomarkers, Tumor/analysis , Carcinoma, Endometrioid , Carcinoma, Ovarian Epithelial , Cross-Sectional Studies , Cystadenocarcinoma/genetics , Cystadenocarcinoma/pathology , Cystadenocarcinoma, Mucinous , Cystadenocarcinoma, Serous , Female , Humans , Middle Aged , Neoplasm Staging , Neoplasms, Glandular and Epithelial/genetics , Neoplasms, Glandular and Epithelial/pathology , Ovarian Neoplasms/genetics , Ovarian Neoplasms/pathology , Receptor, ErbB-2/genetics
6.
Acta Clin Belg ; 72(1): 6-11, 2017 Feb.
Article in English | MEDLINE | ID: mdl-27267353

ABSTRACT

DNA repair mechanisms play a key role in oncogenesis and cancer progression in women with BRCA mutation-positive (BRCAm) ovarian cancer (OC). The BRCA1/2 and poly(ADP-ribose) polymerase (PARP) proteins are considered the foremost mediators among the various components of double-strand and single-strand repair, respectively. A series of new therapeutic drugs that target PARP have been developed for BRCAm OC. This class of agents provokes tumour-specific cytotoxicity with minimal side effects by inducing synthetic lethality, of which they are the first clinical example. The European Medicines Agency granted accelerated licensing approval for the first-in-class-drug that inhibits PARP, olaparib (Lynparza™, AstraZeneca). Olaparib can be used as a monotherapeutic maintenance treatment in patients with platinum-sensitive relapsed (germline and/or somatic) BRCAm high-grade serous epithelial ovarian, fallopian tube or primary peritoneal cancer responsive to platinum-based chemotherapy. Seen in light of these recent events, this review article will focus on (a) how PARP-inhibitors exploit cancer-specific defects in the homologous recombination repair apparatus and (b) how BRCA testing is implemented in routine clinical care.


Subject(s)
Cystadenocarcinoma/drug therapy , Ovarian Neoplasms/drug therapy , Phthalazines/therapeutic use , Piperazines/therapeutic use , Poly(ADP-ribose) Polymerase Inhibitors/therapeutic use , Cystadenocarcinoma/genetics , Female , Genes, BRCA1 , Genes, BRCA2 , Genetic Testing , Humans , Ovarian Neoplasms/genetics
7.
Tumour Biol ; 37(8): 10499-506, 2016 Aug.
Article in English | MEDLINE | ID: mdl-26850595

ABSTRACT

Ovarian cancer is commonly treated with cisplatin and paclitaxel combination chemotherapy; however, ovarian cancer cells often develop resistance to these drugs. Increasingly, microRNAs (miRNAs) including miR-873 have been implicated in drug resistance in many cancers, but the role of miR-873 in ovarian cancer remains unknown. MTT cell viability assays revealed that the sensitivities of ovarian cancer lines to cisplatin and paclitaxel increased following transfection with miR-873 (P < 0.05). After predicting the miR-873 binding region in the 3'-untranslated region of ABCB1, dual-luciferase reporter assay confirmed this prediction. RT-PCR and Western blotting revealed that MDR1 expression was significantly downregulated after transfection with miR-873 and upregulated after transfection with anti-miR-873 at both mRNA and protein levels compared to negative controls (P < 0.05). Experiments in a mouse xenograft model confirmed that intratumoral administration of miR-873 could enhance the efficacy of cisplatin in inhibiting tumor growth in ovarian cancer in vivo (P < 0.05). ABCB1 overexpression reduced sensitivities of ovarian cancer lines OVCAR3 and A2780 to cisplatin and paclitaxel, which can be reversed by miR-873 mimic transfection (P < 0.05). In summary, we demonstrated that overexpression of miR-873 increased the sensitivity of ovarian cancer cells to cisplatin and paclitaxel by targeting MDR1 expression. Our findings suggest that combination therapies with chemotherapy agents and miR-873 may suppress drug resistance in ovarian cancer.


Subject(s)
Cystadenocarcinoma/metabolism , MicroRNAs/genetics , Neoplasm Proteins/physiology , Ovarian Neoplasms/metabolism , RNA, Neoplasm/genetics , 3' Untranslated Regions/genetics , ATP Binding Cassette Transporter, Subfamily B/biosynthesis , ATP Binding Cassette Transporter, Subfamily B/genetics , ATP Binding Cassette Transporter, Subfamily B/physiology , Animals , Antineoplastic Agents, Alkylating/therapeutic use , Antineoplastic Agents, Phytogenic/pharmacokinetics , Antineoplastic Agents, Phytogenic/pharmacology , Cell Line, Tumor , Cisplatin/pharmacokinetics , Cisplatin/therapeutic use , Cystadenocarcinoma/drug therapy , Cystadenocarcinoma/genetics , Cystadenocarcinoma/pathology , Drug Resistance, Multiple/genetics , Drug Resistance, Neoplasm/genetics , Female , Heterografts , Humans , Mice , Mice, Nude , MicroRNAs/antagonists & inhibitors , Neoplasm Proteins/biosynthesis , Neoplasm Proteins/genetics , Ovarian Neoplasms/drug therapy , Ovarian Neoplasms/genetics , Ovarian Neoplasms/pathology , Paclitaxel/pharmacokinetics , Paclitaxel/pharmacology , RNA, Antisense/genetics , RNA, Messenger/biosynthesis , RNA, Neoplasm/antagonists & inhibitors , RNA, Neoplasm/biosynthesis , Random Allocation , Transfection
8.
Sci Rep ; 5: 17683, 2015 Dec 03.
Article in English | MEDLINE | ID: mdl-26631459

ABSTRACT

Ovarian cancer (OV) is the most common and lethal gynecological tumor with a poor prognosis for women; however, the regulatory roles of the long non-coding RNAs (lncRNAs) in ovarian malignant progression are insufficiently understood. Here, we investigated the expression patterns of lncRNAs and mRNAs in the high-throughput molecular profiles of 399 OV patients and constructed a functional lncRNA-mRNA co-expression network across OV malignant progression. We found that two protective lncRNAs, RP11-284N8.3.1 and AC104699.1.1, were not only differentially expressed throughout the progression of malignant OV but were also independently predictive of the survival of patients with different OV stages. A functional analysis of the two lncRNAs predicted their roles in immune system activation and other anti-tumor processes in the OV microenvironment. Integrating these two lncRNAs into an OV risk model was able to significantly stratify patients into different risk groups. Overall, our analysis effectively provides insights into the lncRNA association with malignant OV progression. The two-lncRNA signature is a candidate biomarker for the prognosis of patients with OV and may enable a more accurate prediction of survival.


Subject(s)
Biomarkers, Tumor/genetics , Cystadenocarcinoma/genetics , Ovarian Neoplasms/genetics , RNA, Long Noncoding/genetics , RNA, Messenger/genetics , Aged , Biomarkers, Tumor/immunology , Cystadenocarcinoma/mortality , Cystadenocarcinoma/pathology , Female , Gene Expression Regulation, Neoplastic , Gene Regulatory Networks , Humans , Middle Aged , Ovarian Neoplasms/mortality , Ovarian Neoplasms/pathology , Prognosis , RNA, Long Noncoding/immunology , Survival Analysis
9.
Oncogene ; 34(17): 2239-50, 2015 Apr 23.
Article in English | MEDLINE | ID: mdl-24931163

ABSTRACT

Recent clinical trials using rapalogues in tuberous sclerosis complex show regression in volume of typically vascularised tumours including angiomyolipomas and subependymal giant cell astrocytomas. By blocking mechanistic/mammalian target of rapamycin complex 1 (mTORC1) signalling, rapalogue efficacy is likely to occur, in part, through suppression of hypoxia-inducible factors (HIFs) and vascular endothelial growth factors (VEGFs). We show that rapamycin reduces HIF-1α protein levels, and to a lesser extent VEGF-A levels, in renal cystadenoma cells in a Tsc2+/- mouse model. We established that mTORC1 drives HIF-1α protein accumulation through enhanced transcription of HIF-1α mRNA, a process that is blocked by either inhibition or knockdown of signal transducer and activation of transcription 3 (STAT3). Furthermore, we demonstrated that STAT3 is directly phosphorylated by mTORC1 on Ser727 during hypoxia, promoting HIF-1α mRNA transcription. mTORC1 also regulates HIF-1α synthesis on a translational level via co-operative regulation of both initiation factor 4E-binding protein 1 (4E-BP1) and ribosomal protein S6 kinase-1 (S6K1), whereas HIF-1α degradation remains unaffected. We therefore proposed that mTORC1 drives HIF-1α synthesis in a multifaceted manner through 4E-BP1/eIF4E, S6K1 and STAT3. Interestingly, we observed a disconnect between HIF-1α protein levels and VEGF-A expression. Although both S6K1 and 4E-BP1 regulate HIF-1α translation, VEGF-A is primarily under the control of 4E-BP1/eIF4E. S6K1 inhibition reduces HIF-1α but not VEGF-A expression, suggesting that mTORC1 mediates VEGF-A expression via both HIF-1α-dependent and -independent mechanisms. Our work has important implications for the treatment of vascularised tumours, where mTORC1 acts as a central mediator of STAT3, HIF-1α, VEGF-A and angiogenesis via multiple signalling mechanisms.


Subject(s)
Carrier Proteins/metabolism , Cystadenocarcinoma/metabolism , Hypoxia-Inducible Factor 1, alpha Subunit/metabolism , Kidney Neoplasms/metabolism , Multiprotein Complexes/metabolism , Neoplasm Proteins/metabolism , Phosphoproteins/metabolism , Ribosomal Protein S6 Kinases, 90-kDa/metabolism , STAT3 Transcription Factor/metabolism , Signal Transduction , TOR Serine-Threonine Kinases/metabolism , Vascular Endothelial Growth Factor A/metabolism , Adaptor Proteins, Signal Transducing , Animals , Carrier Proteins/genetics , Cell Cycle Proteins , Cell Hypoxia/genetics , Cystadenocarcinoma/genetics , Cystadenocarcinoma/pathology , Eukaryotic Initiation Factors , Gene Expression Regulation, Neoplastic , HEK293 Cells , Humans , Hypoxia-Inducible Factor 1, alpha Subunit/genetics , Kidney Neoplasms/genetics , Kidney Neoplasms/pathology , Mechanistic Target of Rapamycin Complex 1 , Mice , Mice, Knockout , Multiprotein Complexes/genetics , Neoplasm Proteins/genetics , Phosphoproteins/genetics , Ribosomal Protein S6 Kinases, 90-kDa/genetics , STAT3 Transcription Factor/genetics , TOR Serine-Threonine Kinases/genetics , Vascular Endothelial Growth Factor A/genetics
10.
Methods ; 67(3): 344-53, 2014 Jun 01.
Article in English | MEDLINE | ID: mdl-24561168

ABSTRACT

In order to improve our understanding of cancer and develop multi-layered theoretical models for the underlying mechanism, it is essential to have enhanced understanding of the interactions between multiple levels of genomic data that contribute to tumor formation and progression. Although there exist recent approaches such as a graph-based framework that integrates multi-omics data including copy number alteration, methylation, gene expression, and miRNA data for cancer clinical outcome prediction, most of previous methods treat each genomic data as independent and the possible interplay between them is not explicitly incorporated to the model. However, cancer is dysregulated by multiple levels in the biological system through genomic, epigenomic, transcriptomic, and proteomic level. Thus, genomic features are likely to interact with other genomic features in the different genomic levels. In order to deepen our knowledge, it would be desirable to incorporate such inter-relationship information when integrating multi-omics data for cancer clinical outcome prediction. In this study, we propose a new graph-based framework that integrates not only multi-omics data but inter-relationship between them for better elucidating cancer clinical outcomes. In order to highlight the validity of the proposed framework, serous cystadenocarcinoma data from TCGA was adopted as a pilot task. The proposed model incorporating inter-relationship between different genomic features showed significantly improved performance compared to the model that does not consider inter-relationship when integrating multi-omics data. For the pair between miRNA and gene expression data, the model integrating miRNA, for example, gene expression, and inter-relationship between them with an AUC of 0.8476 (REI) outperformed the model combining miRNA and gene expression data with an AUC of 0.8404. Similar results were also obtained for other pairs between different levels of genomic data. Integration of different levels of data and inter-relationship between them can aid in extracting new biological knowledge by drawing an integrative conclusion from many pieces of information collected from diverse types of genomic data, eventually leading to more effective screening strategies and alternative therapies that may improve outcomes.


Subject(s)
Cystadenocarcinoma/genetics , Genomics/methods , Ovarian Neoplasms/genetics , Cystadenocarcinoma/diagnosis , Cystadenocarcinoma/therapy , Female , Gene Expression Profiling , Humans , Ovarian Neoplasms/diagnosis , Ovarian Neoplasms/therapy , Precision Medicine , Prognosis , Treatment Outcome
11.
Mod Pathol ; 27(1): 30-7, 2014 Jan.
Article in English | MEDLINE | ID: mdl-23807775

ABSTRACT

Mammary analog secretory carcinoma of salivary gland is a recently described entity with unique morphologic, clinical, and genetic characteristics, including the characteristic t(12;15)(p13;q25) with ETV6-NTRK3 translocation found in secretory carcinomas of the breast. Before their initial description, these salivary gland tumors were generally diagnosed as acinic cell carcinoma or adenocarcinoma. For the purpose of this study, all cases of salivary gland acinic cell carcinoma, cribriform cystadenocarcinoma, and adenocarcinoma, not otherwise specified (NOS), diagnosed over a 10-year period were retrieved from our surgical pathology files. There were a total of 11 cases diagnosed as acinic cell carcinoma, 10 cases of adenocarcinoma, NOS, and 6 cases of cribriform cystadenocarcinoma. All slides were reviewed by two pathologists (AP, CGF) and tumors that show morphologic features of mammary analog secretory carcinoma according to the recent literature were selected. This process narrowed down the initial number to six cases originally diagnosed as acinic cell carcinoma, three cases originally diagnosed as adenocarcinoma, NOS, and one case originally diagnosed as cribriform cystadenocarcinoma. The 10 cases were subjected to immunohistochemistry for S-100, mammaglobin, and ANO1, as well as fluorescence in situ hybridization analysis for t(12;15)(p13;q25) with ETV6-NTRK3 fusion rearrangement. The ETV6-NTRK3 gene rearrangement was detected in three tumors. These three tumors, initially diagnosed as acinic cell carcinomas, stained positive for S-100 and mammaglobin, and negative for ANO1 by immunohistochemistry. Two of the three patients were male (2/3). In summary, mammary analog secretory carcinoma is a newly described diagnostic entity that should be in the differential diagnosis of salivary gland tumors that morphologically mimic other neoplasms, mainly acinic cell carcinomas. They differ from conventional acinic cell tumors immunohistochemically and molecularly. Positivity for mammaglobin and S-100, and negativity for ANO1 are useful screening tools before confirmatory molecular studies.


Subject(s)
Breast Neoplasms/diagnosis , Carcinoma, Acinar Cell/diagnosis , Carcinoma/diagnosis , Cystadenocarcinoma/diagnosis , Salivary Gland Neoplasms/diagnosis , Adult , Aged , Aged, 80 and over , Anoctamin-1 , Biomarkers, Tumor/analysis , Biomarkers, Tumor/genetics , Biopsy , Breast Neoplasms/chemistry , Breast Neoplasms/classification , Breast Neoplasms/genetics , Breast Neoplasms/pathology , Carcinoma/chemistry , Carcinoma/classification , Carcinoma/genetics , Carcinoma/pathology , Carcinoma, Acinar Cell/chemistry , Carcinoma, Acinar Cell/classification , Carcinoma, Acinar Cell/genetics , Carcinoma, Acinar Cell/pathology , Chloride Channels/analysis , Chromosomes, Human, Pair 12 , Chromosomes, Human, Pair 15 , Cystadenocarcinoma/chemistry , Cystadenocarcinoma/classification , Cystadenocarcinoma/genetics , Cystadenocarcinoma/pathology , Diagnosis, Differential , Female , Gene Rearrangement , Humans , Immunohistochemistry , In Situ Hybridization, Fluorescence , Male , Middle Aged , Neoplasm Proteins/analysis , Oncogene Proteins, Fusion/genetics , Predictive Value of Tests , S100 Proteins/analysis , Salivary Gland Neoplasms/chemistry , Salivary Gland Neoplasms/classification , Salivary Gland Neoplasms/genetics , Salivary Gland Neoplasms/pathology , Secretoglobins/analysis , Translocation, Genetic
12.
Histopathology ; 63(2): 250-62, 2013 Aug.
Article in English | MEDLINE | ID: mdl-23738717

ABSTRACT

AIMS: Salivary duct carcinoma (SDC) often arises in pleomorphic adenoma (PA). Putative precursors, including low-grade cribriform cystadenocarcinoma (LGCCC) and ductal carcinoma in-situ (DCIS), are more controversial. Rearrangement of PLAG1 or HMGA2 is seen in 50-70% of PAs, but this has not been investigated in SDC. Using a large collection of SDCs from a single institution, we aimed to study these genes by fluorescence in-situ hybridization (FISH), and to correlate the presence of precursor lesions/intraductal proliferations with gene alterations. METHODS AND RESULTS: Forty-four SDCs were stained for smooth muscle actin, CK14, and p63, and examined with PLAG1 and HMGA2 FISH. Eight cases were SDC ex-PA; ten had a hyalinized nodule (HN), which is suspicious for PA; six arose in association with LGCCC; and twenty were 'de-novo' SDCs. Ten cases had PLAG1 rearrangement/amplification (22.7%) and eight had HMGA2 (18.2%) rearrangement/amplification. The positive cases were four SDC ex-PAs, eight SDCs with an HN, and five 'de-novo' SDCs. Twenty-three SDC ex-PAs were present in total (52.3%). All six SDC ex-LGCCCs were FISH-negative. Myoepithelial staining surrounded all LGCCCs, and demonstrated DCIS in 17 cases. Eleven DCIS lesions were in SDC ex-PAs or FISH-positive 'de-novo' SDCs. These cases represent 'cancerization' of ducts. Only six FISH-negative 'de-novo' SDCs showed DCIS. CONCLUSIONS: A large proportion of SDCs arise in PAs (with or without residual evidence of a PA). A small proportion of SDCs arise in LGCCCs. Cases showing DCIS often represent cancerization.


Subject(s)
DNA-Binding Proteins/genetics , Gene Rearrangement , HMGA2 Protein/genetics , Salivary Ducts , Salivary Gland Neoplasms/genetics , Salivary Gland Neoplasms/pathology , Actins/metabolism , Adenoma, Pleomorphic/genetics , Adenoma, Pleomorphic/metabolism , Adenoma, Pleomorphic/pathology , Adult , Aged , Aged, 80 and over , Carcinoma in Situ/genetics , Carcinoma in Situ/metabolism , Carcinoma in Situ/pathology , Carcinoma, Ductal/genetics , Carcinoma, Ductal/metabolism , Carcinoma, Ductal/pathology , Cystadenocarcinoma/genetics , Cystadenocarcinoma/metabolism , Cystadenocarcinoma/pathology , Female , Gene Amplification , Humans , Immunohistochemistry , In Situ Hybridization, Fluorescence , Keratin-14/metabolism , Male , Membrane Proteins/metabolism , Middle Aged , Salivary Gland Neoplasms/metabolism
13.
Hum Pathol ; 44(7): 1406-11, 2013 Jul.
Article in English | MEDLINE | ID: mdl-23427871

ABSTRACT

We identified 3 consult cases of tubulocystic renal cell carcinoma with poorly differentiated areas. Two lesions measuring 9.5 and 3.8 cm were described as partly solid and cystic. One case was grossly a 14.0-cm cyst with a granular lining. Microscopically, all had classic areas of circumscribed tubulocystic renal cell carcinoma occupying 30%, 80%, and 90% of the tumor; 2 cases had small components of papillary renal cell carcinoma, and 1 case had a central large cystic component. In 2 cases, proliferations of small tubules infiltrated away from the main mass with typical features of collecting duct carcinoma. In the third case, a focus of poorly differentiated carcinoma was seen adjacent to the tubulocystic renal cell carcinoma. In 2 cases, tumor invaded perirenal tissue. The third case was organ confined with vascular invasion. One patient died 9 months postoperatively with metastases to the abdominal wall and femur. The second case developed a recurrence in the renal bed 3 years postoperatively. The third patient was lost to follow-up. Fluorescence in situ hybridization studies results showed some features overlapping with papillary renal cell carcinoma in both the tubulocystic and collecting duct-like components and with 1 exception showed identical cytogenetic findings between the 2 components. Morphologically, in 2 cases, the collecting duct-like areas were also indistinguishable from collecting duct carcinoma suggesting a relationship between the 2 entities. This is the first series and only the second report of tubulocystic renal cell carcinoma with poorly differentiated components and documents the increased the risk of aggressive behavior above that of usual tubulocystic renal cell carcinoma.


Subject(s)
Carcinoma, Renal Cell/secondary , Cystadenocarcinoma/pathology , Kidney Neoplasms/pathology , Abdominal Neoplasms/secondary , Abdominal Wall/pathology , Aged , Bone Neoplasms/secondary , Carcinoma, Renal Cell/genetics , Carcinoma, Renal Cell/surgery , Chromosome Aberrations , Cystadenocarcinoma/genetics , DNA, Neoplasm/analysis , Fatal Outcome , Humans , In Situ Hybridization, Fluorescence , Kidney Neoplasms/genetics , Kidney Neoplasms/surgery , Kidney Tubules/pathology , Male , Middle Aged , Neoplasm Invasiveness , Neoplasm Recurrence, Local , Neoplasms, Multiple Primary
14.
Pancreatology ; 12(5): 417-20, 2012.
Article in English | MEDLINE | ID: mdl-23127529

ABSTRACT

BACKGROUND/AIMS: Analysis of cystic fluid may be useful in distinguishing between benign and malignant cysts which has significant impact on their management. The aim of our study was to assess the diagnostic utility of carcinoembryonic antigen (CEA) and K-ras gene mutation in pancreatic cysts fluid. METHODS: The study included 56 patients with pancreatic cystic fluid collected for analysis. The cysts were classified as benign (simple cysts, pseudocysts, serous cystadenoma) - 39 patients or premalignant/malignant (mucinous cystadenoma, IPMN, cystadenocarcinoma) - 17 patients. The patients history, CEA fluid concentrations and presence of K-ras mutation were analyzed. RESULTS: CEA were higher in patients with malignant cysts (mean levels 238 ± 12.5 ng/ml; range 32.8-4985 ng/ml) compared to benign lesions (mean levels 34.5 ± 3.7 ng/ml; range 3.9-693 ng/ml; p < 0.001). K-ras mutation correctly classified 11 of 17 patients with premalignant/malignant lesions. It was also detected in 1 patient with final diagnosis of benign cyst (the sensitivity 64.7% and the specificity 97.4%; p < 0.01). If CEA and molecular analysis were combined in that cysts with either CEA level>45 ng/ml or presence of K-ras mutation, than 16 of 17 premalignant/malignant cysts were correctly identified (94.1%). CONCLUSION: Molecular analysis of pancreatic cyst fluid adds diagnostic value to the preoperative diagnosis and should be considered when cyst cytologic examination is negative for malignancy.


Subject(s)
Cyst Fluid/chemistry , Genes, ras/genetics , Pancreatic Cyst/genetics , Adult , Aged , Carcinoembryonic Antigen/analysis , Cystadenocarcinoma/genetics , Cystadenocarcinoma, Mucinous/genetics , Cystadenoma, Mucinous/genetics , Cystadenoma, Serous/genetics , Female , Humans , Male , Middle Aged , Pancreas/chemistry , Pancreatic Neoplasms/genetics , Pancreatic Pseudocyst/genetics , Precancerous Conditions/genetics
16.
Am J Surg Pathol ; 34(5): 599-608, 2010 May.
Article in English | MEDLINE | ID: mdl-20410810

ABSTRACT

We present a series of 16 salivary gland tumors with histomorphologic and immunohistochemical features reminiscent of secretory carcinoma of the breast. This is a hitherto undescribed and distinctive salivary gland neoplasm, with features resembling both salivary acinic cell carcinoma (AciCC) and low-grade cystadenocarcinoma, and displaying strong similarities to breast secretory carcinoma. Microscopically, the tumors have a lobulated growth pattern and are composed of microcystic and glandular spaces with abundant eosinophilic homogenous or bubbly secretory material positive for periodic acid-Schiff, mucicarmine, MUC1, MUC4, and mammaglobin. The neoplasms also show strong vimentin, S-100 protein, and STAT5a positivity. For this tumor, we propose a designation mammary analogue secretory carcinoma of salivary glands (MASC). The 16 patients comprised 9 men and 7 women, with a mean age of 46 years (range 21 to 75). Thirteen cases occurred in the parotid gland, and one each in the minor salivary glands of the buccal mucosa, upper lip, and palate. The mean size of the tumors was 2.1 cm (range 0.7 to 5.5 cm). The duration of symptoms was recorded in 11 cases and ranged from 2 months to 30 years. Clinical follow-up was available in 13 cases, and ranged from 3 months to 10 years. Four patients suffered local recurrences. Two patients died, 1 of them owing to multiple local recurrences with extension to the temporal bone, and another owing to metastatic dissemination to cervical lymph nodes, pleura, pericardium, and lungs. We have shown a t(12;15) (p13;q25) ETV6-NTRK3 translocation in all but one case of MASC suitable for analysis. One case was not analyzable and another was not available for testing. This translocation was not found in any conventional salivary AciCC (12 cases), nor in other tumor types including pleomorphic adenoma (1 case) and low-grade cribriform cystadenocarcinoma (1 case), whereas ETV6-NTRK3 gene rearrangements were proven in all 3 tested cases of mammary secretory carcinoma. Thus, our results strongly support the concept that MASC and AciCC are different entities.


Subject(s)
Cystadenocarcinoma/genetics , Oncogene Proteins, Fusion/genetics , Salivary Gland Neoplasms/genetics , Adult , Aged , Biomarkers, Tumor/metabolism , Chromosomes, Human, Pair 12 , Chromosomes, Human, Pair 15 , Combined Modality Therapy , Cystadenocarcinoma/metabolism , Cystadenocarcinoma/pathology , Female , Gene Rearrangement , Humans , Immunohistochemistry , In Situ Hybridization, Fluorescence , Male , Middle Aged , Neoplasms, Multiple Primary , Oncogene Proteins, Fusion/metabolism , RNA, Neoplasm/analysis , Reverse Transcriptase Polymerase Chain Reaction , Salivary Gland Neoplasms/metabolism , Salivary Gland Neoplasms/pathology , Salivary Glands/surgery , Translocation, Genetic , Treatment Outcome , Young Adult
17.
Mod Pathol ; 23(5): 673-81, 2010 May.
Article in English | MEDLINE | ID: mdl-20228781

ABSTRACT

Ovarian carcinoma consists of a group of histologically heterogeneous diseases involving distinct tumorigenic pathways. High-grade papillary serous carcinoma of the ovary is commonly associated with p53 mutations. HMGA2, an oncofetal protein, is found to be overexpressed in ovarian cancer. To study the function of HMGA2 in ovarian cancer, it is important to know which subtypes of ovarian cancer are associated with HMGA2 overexpression. In this study, we collected six different types of ovarian cancer and examined HMGA2 expression by immunohistochemistry, along with HMGA1, p53 and Ki-67. We found that HMGA2 overexpression was significantly higher in high-grade papillary serous carcinoma (64%) and carcinosarcoma (60%) than in other types of ovarian cancers (7-23%). HMGA2 overexpression was moderately associated with dominant p53 mutations (R=0.51). In addition, the microRNA in situ analysis revealed that let-7b, the HMGA2-negative regulators, were significantly lost in high-grade serous carcinoma. Our findings suggest that HMGA2 is an important molecular change significantly related to high-grade papillary serous carcinoma and is less common in other histological types of ovarian cancer.


Subject(s)
Cystadenocarcinoma/metabolism , HMGA2 Protein/metabolism , Ovarian Neoplasms/metabolism , Adolescent , Adult , Aged , Aged, 80 and over , Biomarkers, Tumor/genetics , Biomarkers, Tumor/metabolism , Cystadenocarcinoma/genetics , Cystadenocarcinoma/pathology , Female , Gene Expression Regulation, Neoplastic , HMGA2 Protein/genetics , Humans , Immunohistochemistry , In Situ Hybridization , MicroRNAs/genetics , MicroRNAs/metabolism , Middle Aged , Ovarian Neoplasms/genetics , Ovarian Neoplasms/pathology , RNA, Messenger/genetics , RNA, Messenger/metabolism , Tumor Suppressor Protein p53/genetics , Tumor Suppressor Protein p53/metabolism
18.
Nan Fang Yi Ke Da Xue Xue Bao ; 29(4): 685-8, 2009 Apr.
Article in Chinese | MEDLINE | ID: mdl-19403395

ABSTRACT

OBJECTIVE: To explore the correlation of ZNF217 expression to the carcinogenesis and progression of human ovarian cancer. METHODS: Immunohistochemistry and real-time RT-PCR were used to detect ZNF217 expression in human ovarian cystadenocarcinoma, ovarian cystadenoma and normal ovary tissues. RESULTS: The expression levels of ZNF217 protein and mRNA in ovarian cystadenocarcinoma was significantly higher than those in matched ovarian cystadenoma and normal tissues (P<0.05). No significant difference was found in the expression between ovarian cystadenoma and normal ovarian tissues (P>0.05). The mRNA expression in the specimens was consistent with the protein expression of ZNF217 (P<0.05). CONCLUSION: ZNF217 gene expression is closely correlated to the occurrence and clinical stages of ovarian carcinomas, suggesting that ZNF217 can be an important candidate gene responsible for the occurrence and progression of ovarian carcinomas.


Subject(s)
Cystadenocarcinoma/genetics , Cystadenocarcinoma/pathology , Disease Progression , Gene Expression Regulation, Neoplastic , Ovarian Neoplasms/genetics , Ovarian Neoplasms/pathology , Trans-Activators/genetics , Female , Humans , Neoplasm Staging , Reverse Transcriptase Polymerase Chain Reaction , Time Factors
19.
Sichuan Da Xue Xue Bao Yi Xue Ban ; 40(1): 6-10, 2009 Jan.
Article in Chinese | MEDLINE | ID: mdl-19292033

ABSTRACT

OBJECTIVE: To investigate the effect of ARLTS1 (ADP-ribosylation factor-like tumor suppressor gene 1) on the growth and apoptosis of ovarian cystadenocarcinoma cell line SKOV3. METHODS: The recombinant plasmid pCMV-Tag 3B-ARLTS1 was constructed and transfected into SKOV3 cells by liposome protocol. The expression of ARLTS1 mRNA and its protein were examined by RT-PCR and Western blotting. Effects of ARLTS1 gene on growth and apoptosis of the transfected cells were evaluated by MTT assay and flow cytometry (FCM). The alterations of caspase-3 and bcl-2 protein levels were examined by Western blotting. RESULTS: The stable transfection of pCMV-Tag 3B-ARLTS1 in SKOV3 cells were obtained and verified by RT-PCR and Western blotting methods. After transfected with ARLTS1, more SKOV3 cells were observed in S phase by FCM compared with those in the other two groups (P is 0.035 and 0.011, respectively). The 36.7% apoptotic index of ARLTS1 transfected cell was significantly higher than that of the other two groups (P < 0.001). The growth of ARLTS1 transfected cells was dramatically inhibited compared with cells transfected with Vector (P < 0.05). Western blotting indicated a significantly decrease in caspase-3 and bcl-2 protein levels in cells transfected with ARLTS1 compared with SKOV3 cells (P is 0.021 and 0.013, respectively). CONCLUSION: ARLTS1 transfection can inhibit proliferation and induce apoptosis of SKOV3 cells in vitro and down-regulate the expression of caspase-3 and bcl-2. ARLTS1 gene may be a candidate tumor suppressor gene in ovarian cancer.


Subject(s)
ADP-Ribosylation Factors/genetics , Apoptosis/genetics , Ovarian Neoplasms/genetics , Ovarian Neoplasms/pathology , Transfection , ADP-Ribosylation Factors/metabolism , Caspase 3/metabolism , Cell Line, Tumor , Cell Proliferation , Cystadenocarcinoma/genetics , Cystadenocarcinoma/pathology , Female , Humans , Proto-Oncogene Proteins c-bcl-2/metabolism , RNA, Messenger/genetics , RNA, Messenger/metabolism
20.
Genes Chromosomes Cancer ; 48(2): 184-93, 2009 Feb.
Article in English | MEDLINE | ID: mdl-18973136

ABSTRACT

Alterations of chromosome bands 19p13 and 19q13 in the form of added extra material of unknown origin are among the most frequent cytogenetic changes in ovarian carcinomas. To investigate the chromosomal composition of the 19p+ and/or 19q+ markers, we selected for examination 26 ovarian carcinomas which by G-banding had one to four 19p+ and/or 19q+, in total 37 markers. These cases were then subjected to chromosomal microdissection with subsequent reverse painting, which gave informative results on 29 markers. The breakpoints on chromosome 19 were located in both the short (p; n = 15) and the long (q; n = 10) arms, as well as in the centromeric (n = 2) and pericentromeric (n = 6) region. The analysis showed that many chromosomes added material to chromosome 19, but the chromosome arms 11q, 21q, and 22q were particularly common donors. Homogeneously staining regions (hsr) were seen in only three markers, in all of them consisting of 19p material. Eighteen markers were derived from an unbalanced translocation involving chromosome 19. In five markers, chromosome 19 was rearranged with two chromosomes. The most complex marker showed chromosome 19 rearranged with three other chromosomes, i.e., X, 13, and 16. In five markers, all of the additional material stemmed from chromosome 19 itself. This is the first large chromosome microdissection/FISH study of chromosome 19 markers in ovarian carcinomas. A detailed map of the rearrangements should provide clues to the positions of oncogenes and potential fusion genes important in ovarian carcinogenesis.


Subject(s)
Chromosome Painting/methods , Chromosomes, Human, Pair 19/genetics , Gene Rearrangement , Ovarian Neoplasms/genetics , Adenocarcinoma, Clear Cell/genetics , Chromosome Banding , Chromosome Breakage , Chromosome Mapping , Cystadenocarcinoma/genetics , Female , Humans , Karyotyping , Microdissection , Ovary/metabolism , Translocation, Genetic/genetics
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