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1.
Sci Rep ; 14(1): 15696, 2024 Jul 08.
Article in English | MEDLINE | ID: mdl-38977909

ABSTRACT

As the largest organ in the human body, skeletal muscle is essential for breathing support, movement initiation, and maintenance homeostasis. It has been shown that programmed cell death (PCD), which includes autophagy, apoptosis, and necrosis, is essential for the development of skeletal muscle. A novel form of PCD called ferroptosis is still poorly understood in relation to skeletal muscle. In this study, we observed that the activation of ferroptosis significantly impeded the differentiation of C2C12 myoblasts into myotubes and concurrently suppressed the expression of OTUB1, a crucial deubiquitinating enzyme. OTUB1-silenced C2C12 mouse myoblasts were used to investigate the function of OTUB1 in ferroptosis. The results show that OTUB1 knockdown in vitro significantly increased C2C12 ferroptosis and inhibited myogenesis. Interestingly, the induction of ferroptosis resulting from OTUB1 knockdown was concomitant with the activation of autophagy. Furthermore, OTUB1 interacted with the P62 protein and stabilized its expression by deubiquitinating it, thereby inhibiting autophagy-dependent ferroptosis and promoting myogenesis. All of these findings demonstrate the critical role that OTUB1 plays in controlling ferroptosis, and we suggest that focusing on the OTUB1-P62 axis may be a useful tactic in the treatment and prevention of disorders involving the skeletal muscle.


Subject(s)
Autophagy , Cell Differentiation , Cysteine Endopeptidases , Ferroptosis , Muscle Development , Muscle Fibers, Skeletal , Myoblasts , Animals , Mice , Muscle Fibers, Skeletal/metabolism , Ferroptosis/genetics , Cysteine Endopeptidases/metabolism , Cysteine Endopeptidases/genetics , Myoblasts/metabolism , Myoblasts/cytology , Cell Line , Deubiquitinating Enzymes/metabolism , Deubiquitinating Enzymes/genetics , Ubiquitination , Humans , Sequestosome-1 Protein/metabolism , Sequestosome-1 Protein/genetics
2.
Mol Cancer ; 23(1): 116, 2024 May 31.
Article in English | MEDLINE | ID: mdl-38822351

ABSTRACT

BACKGROUND: Elevated evidence suggests that the SENPs family plays an important role in tumor progression. However, the role of SENPs in AML remains unclear. METHODS: We evaluated the expression pattern of SENP1 based on RNA sequencing data obtained from OHSU, TCGA, TARGET, and MILE datasets. Clinical samples were used to verify the expression of SENP1 in the AML cells. Lentiviral vectors shRNA and sgRNA were used to intervene in SENP1 expression in AML cells, and the effects of SENP1 on AML proliferation and anti-apoptosis were detected using in vitro and in vivo models. Chip-qPCR, MERIP-qPCR, CO-IP, RNA pulldown, and dual-luciferase reporter gene assays were used to explore the regulatory mechanisms of SNEP1 in AML. RESULTS: SENP1 was significantly upregulated in high-risk AML patients and closely related to poor prognosis. The AKT/mTOR signaling pathway is a key downstream pathway that mediates SENP1's regulation of AML proliferation and anti-apoptosis. Mechanistically, the CO-IP assay revealed binding between SENP1 and HDAC2. SUMO and Chip-qPCR assays suggested that SENP1 can desumoylate HDAC2, which enhances EGFR transcription and activates the AKT pathway. In addition, we found that IGF2BP3 expression was upregulated in high-risk AML patients and was positively correlated with SENP1 expression. MERIP-qPCR and RIP-qPCR showed that IGF2BP3 binds SENP1 3-UTR in an m6A manner, enhances SENP1 expression, and promotes AKT pathway conduction. CONCLUSIONS: Our findings reveal a distinct mechanism of SENP1-mediated HDAC2-AKT activation and establish the critical role of the IGF2BP3/SENP1signaling axis in AML development.


Subject(s)
Adenosine , Cell Proliferation , Cysteine Endopeptidases , Histone Deacetylase 2 , Leukemia, Myeloid, Acute , Proto-Oncogene Proteins c-akt , RNA-Binding Proteins , Sumoylation , Animals , Female , Humans , Male , Mice , Adenosine/analogs & derivatives , Adenosine/metabolism , Apoptosis , Biomarkers, Tumor/metabolism , Biomarkers, Tumor/genetics , Cell Line, Tumor , Cysteine Endopeptidases/metabolism , Cysteine Endopeptidases/genetics , Disease Progression , Gene Expression Regulation, Leukemic , Histone Deacetylase 2/metabolism , Histone Deacetylase 2/genetics , Leukemia, Myeloid, Acute/genetics , Leukemia, Myeloid, Acute/metabolism , Leukemia, Myeloid, Acute/pathology , Prognosis , Proto-Oncogene Proteins c-akt/metabolism , RNA-Binding Proteins/metabolism , RNA-Binding Proteins/genetics , Signal Transduction , Xenograft Model Antitumor Assays
3.
Sci Rep ; 14(1): 12876, 2024 06 05.
Article in English | MEDLINE | ID: mdl-38834612

ABSTRACT

This study investigates quercetin complexes as potential synergistic agents against the important respiratory pathogen Streptococcus pneumoniae. Six quercetin complexes (QCX1-6) were synthesized by reacting quercetin with various metal salts and boronic acids and characterized using FTIR spectroscopy. Their antibacterial activity alone and in synergism with antibiotics was evaluated against S. pneumoniae ATCC 49619 using disc diffusion screening, broth microdilution MIC determination, and checkerboard assays. Complexes QCX-3 and QCX-4 demonstrated synergy when combined with levofloxacin via fractional inhibitory concentration indices ≤ 0.5 as confirmed by time-kill kinetics. Molecular docking elucidated interactions of these combinations with virulence enzymes sortase A and sialidase. A biofilm inhibition assay found the synergistic combinations more potently reduced biofilm formation versus monotherapy. Additionally, gene-gene interaction networks, biological activity predictions and in-silico toxicity profiling provided insights into potential mechanisms of action and safety.


Subject(s)
Anti-Bacterial Agents , Biofilms , Microbial Sensitivity Tests , Molecular Docking Simulation , Quercetin , Streptococcus pneumoniae , Streptococcus pneumoniae/drug effects , Quercetin/pharmacology , Quercetin/chemistry , Anti-Bacterial Agents/pharmacology , Anti-Bacterial Agents/chemistry , Biofilms/drug effects , Drug Synergism , Bacterial Proteins/metabolism , Bacterial Proteins/genetics , Bacterial Proteins/chemistry , Bacterial Proteins/antagonists & inhibitors , Cysteine Endopeptidases/metabolism , Cysteine Endopeptidases/chemistry , Aminoacyltransferases/antagonists & inhibitors , Aminoacyltransferases/metabolism , Neuraminidase/antagonists & inhibitors , Neuraminidase/metabolism
4.
Appl Microbiol Biotechnol ; 108(1): 360, 2024 Jun 05.
Article in English | MEDLINE | ID: mdl-38836914

ABSTRACT

In the fight against hospital-acquired infections, the challenge posed by methicillin-resistant Staphylococcus aureus (MRSA) necessitates the development of novel treatment methods. This study focused on undermining the virulence of S. aureus, especially by targeting surface proteins crucial for bacterial adherence and evasion of the immune system. A primary aspect of our approach involves inhibiting sortase A (SrtA), a vital enzyme for attaching microbial surface components recognizing adhesive matrix molecules (MSCRAMMs) to the bacterial cell wall, thereby reducing the pathogenicity of S. aureus. Verbascoside, a phenylethanoid glycoside, was found to be an effective SrtA inhibitor in our research. Advanced fluorescence quenching and molecular docking studies revealed a specific interaction between verbascoside and SrtA, pinpointing the critical active sites involved in this interaction. This molecular interaction significantly impedes the SrtA-mediated attachment of MSCRAMMs, resulting in a substantial reduction in bacterial adhesion, invasion, and biofilm formation. The effectiveness of verbascoside has also been demonstrated in vivo, as shown by its considerable protective effects on pneumonia and Galleria mellonella (wax moth) infection models. These findings underscore the potential of verbascoside as a promising component in new antivirulence therapies for S. aureus infections. By targeting crucial virulence factors such as SrtA, agents such as verbascoside constitute a strategic and potent approach for tackling antibiotic resistance worldwide. KEY POINTS: • Verbascoside inhibits SrtA, reducing S. aureus adhesion and biofilm formation. • In vivo studies demonstrated the efficacy of verbascoside against S. aureus infections. • Targeting virulence factors such as SrtA offers new avenues against antibiotic resistance.


Subject(s)
Aminoacyltransferases , Anti-Bacterial Agents , Bacterial Adhesion , Bacterial Proteins , Biofilms , Cysteine Endopeptidases , Glucosides , Methicillin-Resistant Staphylococcus aureus , Molecular Docking Simulation , Phenols , Staphylococcal Infections , Bacterial Proteins/metabolism , Bacterial Proteins/antagonists & inhibitors , Aminoacyltransferases/antagonists & inhibitors , Aminoacyltransferases/metabolism , Cysteine Endopeptidases/metabolism , Methicillin-Resistant Staphylococcus aureus/drug effects , Methicillin-Resistant Staphylococcus aureus/pathogenicity , Glucosides/pharmacology , Animals , Staphylococcal Infections/drug therapy , Staphylococcal Infections/microbiology , Phenols/pharmacology , Bacterial Adhesion/drug effects , Biofilms/drug effects , Anti-Bacterial Agents/pharmacology , Moths/microbiology , Virulence/drug effects , Disease Models, Animal , Virulence Factors/metabolism , Enzyme Inhibitors/pharmacology , Polyphenols
5.
Molecules ; 29(11)2024 Jun 04.
Article in English | MEDLINE | ID: mdl-38893535

ABSTRACT

The aim of this study was to investigate the transition from non-covalent reversible over covalent reversible to covalent irreversible inhibition of cysteine proteases by making delicate structural changes to the warhead scaffold. To this end, dipeptidic rhodesain inhibitors with different N-terminal electrophilic arenes as warheads relying on the SNAr mechanism were synthesized and investigated. Strong structure-activity relationships of the inhibition potency, the degree of covalency, and the reversibility of binding on the arene substitution pattern were found. The studies were complemented and substantiated by molecular docking and quantum-mechanical calculations of model systems. Furthermore, the improvement in the membrane permeability of peptide esters in comparison to their corresponding carboxylic acids was exemplified.


Subject(s)
Cysteine Proteases , Cysteine Proteinase Inhibitors , Molecular Docking Simulation , Cysteine Proteinase Inhibitors/chemistry , Cysteine Proteinase Inhibitors/pharmacology , Cysteine Proteinase Inhibitors/metabolism , Structure-Activity Relationship , Cysteine Proteases/metabolism , Cysteine Proteases/chemistry , Cysteine Endopeptidases/metabolism , Cysteine Endopeptidases/chemistry , Molecular Structure
6.
J Neurosci ; 44(28)2024 Jul 10.
Article in English | MEDLINE | ID: mdl-38830763

ABSTRACT

Chronic sleep disruption (CSD), from insufficient or fragmented sleep and is an important risk factor for Alzheimer's disease (AD). Underlying mechanisms are not understood. CSD in mice results in degeneration of locus ceruleus neurons (LCn) and CA1 hippocampal neurons and increases hippocampal amyloid-ß42 (Aß42), entorhinal cortex (EC) tau phosphorylation (p-tau), and glial reactivity. LCn injury is increasingly implicated in AD pathogenesis. CSD increases NE turnover in LCn, and LCn norepinephrine (NE) metabolism activates asparagine endopeptidase (AEP), an enzyme known to cleave amyloid precursor protein (APP) and tau into neurotoxic fragments. We hypothesized that CSD would activate LCn AEP in an NE-dependent manner to induce LCn and hippocampal injury. Here, we studied LCn, hippocampal, and EC responses to CSD in mice deficient in NE [dopamine ß-hydroxylase (Dbh)-/-] and control male and female mice, using a model of chronic fragmentation of sleep (CFS). Sleep was equally fragmented in Dbh -/- and control male and female mice, yet only Dbh -/- mice conferred resistance to CFS loss of LCn, LCn p-tau, and LCn AEP upregulation and activation as evidenced by an increase in AEP-cleaved APP and tau fragments. Absence of NE also prevented a CFS increase in hippocampal AEP-APP and Aß42 but did not prevent CFS-increased AEP-tau and p-tau in the EC. Collectively, this work demonstrates AEP activation by CFS, establishes key roles for NE in both CFS degeneration of LCn neurons and CFS promotion of forebrain Aß accumulation, and, thereby, identifies a key molecular link between CSD and specific AD neural injuries.


Subject(s)
Amyloid beta-Peptides , Cysteine Endopeptidases , Hippocampus , Locus Coeruleus , Norepinephrine , Sleep Deprivation , Animals , Amyloid beta-Peptides/metabolism , Norepinephrine/metabolism , Mice , Hippocampus/metabolism , Hippocampus/pathology , Sleep Deprivation/metabolism , Sleep Deprivation/pathology , Male , Locus Coeruleus/metabolism , Locus Coeruleus/pathology , Cysteine Endopeptidases/metabolism , Cysteine Endopeptidases/genetics , Peptide Fragments/metabolism , Mice, Inbred C57BL , Mice, Knockout , Dopamine beta-Hydroxylase/metabolism , Dopamine beta-Hydroxylase/genetics , tau Proteins/metabolism , Female , Nerve Degeneration/pathology , Nerve Degeneration/metabolism , Nerve Degeneration/genetics
7.
Molecules ; 29(12)2024 Jun 11.
Article in English | MEDLINE | ID: mdl-38930828

ABSTRACT

The development of new compounds to treat Chagas disease is imperative due to the adverse effects of current drugs and their low efficacy in the chronic phase. This study aims to investigate nitroisoxazole derivatives that produce oxidative stress while modifying the compounds' lipophilicity, affecting their ability to fight trypanosomes. The results indicate that these compounds are more effective against the epimastigote form of T. cruzi, with a 52 ± 4% trypanocidal effect for compound 9. However, they are less effective against the trypomastigote form, with a 15 ± 3% trypanocidal effect. Additionally, compound 11 interacts with a higher number of amino acid residues within the active site of the enzyme cruzipain. Furthermore, it was also found that the presence of a nitro group allows for the generation of free radicals; likewise, the large size of the compound enables increased interaction with aminoacidic residues in the active site of cruzipain, contributing to trypanocidal activity. This activity depends on the size and lipophilicity of the compounds. The study recommends exploring new compounds based on the nitroisoxazole skeleton, with larger substituents and lipophilicity to enhance their trypanocidal activity.


Subject(s)
Isoxazoles , Trypanocidal Agents , Trypanosoma cruzi , Trypanosoma cruzi/drug effects , Trypanocidal Agents/pharmacology , Trypanocidal Agents/chemistry , Trypanocidal Agents/chemical synthesis , Isoxazoles/chemistry , Isoxazoles/pharmacology , Protozoan Proteins/metabolism , Protozoan Proteins/chemistry , Protozoan Proteins/antagonists & inhibitors , Structure-Activity Relationship , Chagas Disease/drug therapy , Chagas Disease/parasitology , Cysteine Endopeptidases/chemistry , Cysteine Endopeptidases/metabolism , Animals , Catalytic Domain , Molecular Structure
8.
Mar Drugs ; 22(6)2024 Jun 10.
Article in English | MEDLINE | ID: mdl-38921577

ABSTRACT

Sortase A (SrtA) is a cysteine transpeptidase that binds to the periplasmic membrane and plays a crucial role in attaching surface proteins, including staphylococcal protein A (SpA), to the peptidoglycan cell wall. Six pentacyclic polyketides (1-6) were isolated from the marine sponge Xestospongia sp., and their structures were elucidated using spectroscopic techniques and by comparing them to previously reported data. Among them, halenaquinol (2) was found to be the most potent SrtA inhibitor, with an IC50 of 13.94 µM (4.66 µg/mL). Semi-quantitative reverse transcription PCR data suggest that halenaquinol does not inhibit the transcription of srtA and spA, while Western blot analysis and immunofluorescence microscopy images suggest that it blocks the cell wall surface anchoring of SpA by inhibiting the activity of SrtA. The onset and magnitude of the inhibition of SpA anchoring on the cell wall surface in S. aureus that has been treated with halenaquinol at a value 8× that of the IC50 of SrtA are comparable to those for an srtA-deletion mutant. These findings contribute to the understanding of the mechanism by which marine-derived pentacyclic polyketides inhibit SrtA, highlighting their potential as anti-infective agents targeting S. aureus virulence.


Subject(s)
Aminoacyltransferases , Anti-Bacterial Agents , Bacterial Proteins , Cell Wall , Cysteine Endopeptidases , Porifera , Staphylococcus aureus , Aminoacyltransferases/antagonists & inhibitors , Aminoacyltransferases/metabolism , Cysteine Endopeptidases/metabolism , Staphylococcus aureus/drug effects , Cell Wall/drug effects , Cell Wall/metabolism , Bacterial Proteins/metabolism , Bacterial Proteins/antagonists & inhibitors , Animals , Porifera/microbiology , Anti-Bacterial Agents/pharmacology , Anti-Bacterial Agents/chemistry , Polyketides/pharmacology , Polyketides/chemistry
9.
Bioorg Med Chem ; 109: 117790, 2024 Jul 15.
Article in English | MEDLINE | ID: mdl-38906067

ABSTRACT

The immunoproteasome subunit LMP7 (ß5i)/LMP2 (ß1i) dual blockade has been reported to suppress B cell differentiation and activation, suggesting that the dual inhibition of LMP7/LMP2 is a promising approach for treating autoimmune diseases. In contrast, the inhibition of the constitutive proteasome subunit ß5c correlates with cytotoxicity against non-immune cells. Therefore, LMP7/LMP2 dual inhibitors with high selectivity over ß5c may be desirable for treating autoimmune diseases. In this study, we present the optimization and discovery of α-amido boronic acids using cryo-electron microscopy (cryo-EM). The exploitation of structural differences between the proteasome subunits led to the identification of a highly selective LMP7/LMP2 dual inhibitor 19. Molecular dynamics simulation based on cryo-EM structures of the proteasome subunits complexed with 19 explained the inhibitory activity profile. In mice immunized with 4-hydroxy-3-nitrophenylacetyl conjugated to ovalbumin, results indicate that 19 is orally bioavailable and shows promise as potential treatment for autoimmune diseases.


Subject(s)
Boronic Acids , Cryoelectron Microscopy , Proteasome Endopeptidase Complex , Proteasome Inhibitors , Proteasome Endopeptidase Complex/metabolism , Proteasome Endopeptidase Complex/chemistry , Animals , Proteasome Inhibitors/pharmacology , Proteasome Inhibitors/chemistry , Proteasome Inhibitors/chemical synthesis , Mice , Boronic Acids/chemistry , Boronic Acids/pharmacology , Boronic Acids/chemical synthesis , Humans , Structure-Activity Relationship , Cysteine Endopeptidases/metabolism , Molecular Structure , Molecular Dynamics Simulation , Drug Discovery
10.
Sci Rep ; 14(1): 13799, 2024 06 14.
Article in English | MEDLINE | ID: mdl-38877048

ABSTRACT

Cardiovascular diseases (CVDs), mainly caused by thrombosis complications, are the leading cause of mortality worldwide, making the development of alternative treatments highly desirable. In this study, the thrombolytic potential of green kiwifruit (Actinidia deliciosa cultivar Hayward) was assessed using in-vitro and in-silico approaches. The crude green kiwifruit extract demonstrated the ability to reduce blood clots significantly by 73.0 ± 1.12% (P < 0.01) within 6 h, with rapid degradation of Aα and Bß fibrin chains followed by the γ chain in fibrinolytic assays. Molecular docking revealed six favorable conformations for the kiwifruit enzyme actinidin (ADHact) and fibrin chains, supported by spontaneous binding energies and distances. Moreover, molecular dynamics simulation confirmed the binding stability of the complexes of these conformations, as indicated by the stable binding affinity, high number of hydrogen bonds, and consistent distances between the catalytic residue Cys25 of ADHact and the peptide bond. The better overall binding affinity of ADHact to fibrin chains Aα and Bß may contribute to their faster degradation, supporting the fibrinolytic results. In conclusion, this study demonstrated the thrombolytic potential of the green kiwifruit-derived enzyme and highlighted its potential role as a natural plant-based prophylactic and therapeutic agent for CVDs.


Subject(s)
Actinidia , Fibrinolytic Agents , Molecular Docking Simulation , Molecular Dynamics Simulation , Actinidia/chemistry , Fibrinolytic Agents/chemistry , Fibrinolytic Agents/pharmacology , Plant Extracts/chemistry , Plant Extracts/pharmacology , Fruit/chemistry , Fibrin/metabolism , Fibrin/chemistry , Animals , Humans , Computer Simulation , Cysteine Endopeptidases/chemistry , Cysteine Endopeptidases/metabolism
11.
Emerg Microbes Infect ; 13(1): 2368221, 2024 Dec.
Article in English | MEDLINE | ID: mdl-38932432

ABSTRACT

A positive-sense (+) single-stranded RNA (ssRNA) virus (e.g. enterovirus A71, EV-A71) depends on viral polypeptide translation for initiation of virus replication after entry. We reported that EV-A71 hijacks Hsp27 to induce hnRNP A1 cytosol redistribution to initiate viral protein translation, but the underlying mechanism is still elusive. Here, we show that phosphorylation-deficient Hsp27-3A (Hsp27S15/78/82A) and Hsp27S78A fail to translocate into the nucleus and induce hnRNP A1 cytosol redistribution, while Hsp27S15A and Hsp27S82A display similar effects to the wild type Hsp27. Furthermore, we demonstrate that the viral 2A protease (2Apro) activity is a key factor in regulating Hsp27/hnRNP A1 relocalization. Hsp27S78A dramatically decreases the IRES activity and viral replication, which are partially reduced by Hsp27S82A. However, Hsp27S15A displays the same activity as the wild-type Hsp27. Peptide S78 potently suppresses EV-A71 protein translation and reproduction through blockage of EV-A71-induced Hsp27 phosphorylation and Hsp27/hnRNP A1 relocalization. A point mutation (S78A) on S78 impairs its inhibitory functions on Hsp27/hnRNP A1 relocalization and viral replication. Taken together, we demonstrate the importance of Ser78 phosphorylation of Hsp27 regulated by virus infection in nuclear translocation, hnRNP A1 cytosol relocation, and viral replication, suggesting a new path (such as peptide S78) for target-based antiviral strategy.


Subject(s)
Enterovirus A, Human , HSP27 Heat-Shock Proteins , Heterogeneous Nuclear Ribonucleoprotein A1 , Virus Replication , Enterovirus A, Human/drug effects , Enterovirus A, Human/physiology , Enterovirus A, Human/genetics , Phosphorylation , Humans , Virus Replication/drug effects , Heterogeneous Nuclear Ribonucleoprotein A1/metabolism , Heterogeneous Nuclear Ribonucleoprotein A1/genetics , HSP27 Heat-Shock Proteins/metabolism , HSP27 Heat-Shock Proteins/genetics , Enterovirus Infections/virology , Enterovirus Infections/metabolism , Antiviral Agents/pharmacology , Viral Proteins/metabolism , Viral Proteins/genetics , Serine/metabolism , HeLa Cells , Protein Biosynthesis , Cysteine Endopeptidases/metabolism , Cysteine Endopeptidases/genetics , Molecular Chaperones/metabolism , Molecular Chaperones/genetics , Heat-Shock Proteins
12.
Mol Plant Pathol ; 25(6): e13487, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38877765

ABSTRACT

We had previously reported that a plum pox virus (PPV)-based chimera that had its P1-HCPro bi-cistron replaced by a modified one from potato virus Y (PVY) increased its virulence in some Nicotiana benthamiana plants, after mechanical passages. This correlated with the natural acquisition of amino acid substitutions in several proteins, including in HCPro at either position 352 (Ile→Thr) or 454 (Leu→Arg), or of mutations in non-coding regions. Thr in position 352 is not found among natural potyviruses, while Arg in 454 is a reversion to the native PVY HCPro amino acid. We show here that both mutations separately contributed to the increased virulence observed in the passaged chimeras that acquired them, and that Thr in position 352 is no intragenic suppressor to a Leu in position 454, because their combined effects were cumulative. We demonstrate that Arg in position 454 improved HCPro autocatalytic cleavage, while Thr in position 352 increased its accumulation and the silencing suppression of a reporter in agropatch assays. We assessed infection by four cloned chimera variants expressing HCPro with none of the two substitutions, one of them or both, in wild-type versus DCL2/4-silenced transgenic plants. We found that during infection, the transgenic context of altered small RNAs affected the accumulation of the four HCPro variants differently and hence, also infection virulence.


Subject(s)
Amino Acid Substitution , Nicotiana , Potyvirus , Viral Proteins , Virulence/genetics , Nicotiana/virology , Potyvirus/pathogenicity , Potyvirus/genetics , Viral Proteins/metabolism , Viral Proteins/genetics , Plant Diseases/virology , Chimera , Plum Pox Virus/pathogenicity , Plum Pox Virus/genetics , Cysteine Endopeptidases/metabolism , Cysteine Endopeptidases/genetics , Mutation/genetics
13.
PLoS Pathog ; 20(5): e1012279, 2024 May.
Article in English | MEDLINE | ID: mdl-38814988

ABSTRACT

The influenza A virus (IAV) consists of 8 single-stranded, negative-sense viral RNA (vRNA) segments. After infection, vRNA is transcribed, replicated, and wrapped by viral nucleoprotein (NP) to form viral ribonucleoprotein (vRNP). The transcription, replication, and nuclear export of the viral genome are regulated by the IAV protein, NS2, which is translated from spliced mRNA transcribed from viral NS vRNA. This splicing is inefficient, explaining why NS2 is present in low abundance after IAV infection. The levels of NS2 and its subsequent accumulation are thought to influence viral RNA replication and vRNP nuclear export. Here we show that NS2 is ubiquitinated at the K64 and K88 residues by K48-linked and K63-linked polyubiquitin (polyUb) chains, leading to the degradation of NS2 by the proteasome. Additionally, we show that a host deubiquitinase, OTUB1, can remove polyUb chains conjugated to NS2, thereby stabilizing NS2. Accordingly, knock down of OTUB1 by siRNA reduces the nuclear export of vRNP, and reduces the overall production of IAV. These results collectively demonstrate that the levels of NS2 in IAV-infected cells are regulated by a ubiquitination-deubiquitination system involving OTUB1 that is necessary for optimal IAV replication.


Subject(s)
Cysteine Endopeptidases , Influenza A virus , Viral Nonstructural Proteins , Virus Replication , Animals , Dogs , Humans , Cysteine Endopeptidases/metabolism , Cysteine Endopeptidases/genetics , Deubiquitinating Enzymes/metabolism , HEK293 Cells , Influenza A virus/metabolism , Influenza, Human/metabolism , Influenza, Human/virology , RNA, Viral/metabolism , RNA, Viral/genetics , Ubiquitination , Viral Nonstructural Proteins/metabolism , Viral Nonstructural Proteins/genetics , Virus Replication/physiology , Cell Line , Vero Cells , Chlorocebus aethiops
14.
PLoS One ; 19(5): e0302692, 2024.
Article in English | MEDLINE | ID: mdl-38722893

ABSTRACT

Tobacco vein necrosis (TVN) is a complex phenomenon regulated by different genetic determinants mapped in the HC-Pro protein (amino acids N330, K391 and E410) and in two regions of potato virus Y (PVY) genome, corresponding to the cytoplasmic inclusion (CI) protein and the nuclear inclusion protein a-protease (NIa-Pro), respectively. A new determinant of TVN was discovered in the MK isolate of PVY which, although carried the HC-Pro determinants associated to TVN, did not induce TVN. The HC-Pro open reading frame (ORF) of the necrotic infectious clone PVY N605 was replaced with that of the non-necrotic MK isolate, which differed only by one amino acid at position 392 (T392 instead of I392). The cDNA clone N605_MKHCPro inoculated in tobacco induced only weak mosaics at the systemic level, demostrating that the amino acid at position 392 is a new determinant for TVN. No significant difference in accumulation in tobacco was observed between N605 and N605_MKHCPro. Since phylogenetic analyses showed that the loss of necrosis in tobacco has occurred several times independently during PVY evolution, these repeated evolutions strongly suggest that tobacco necrosis is a costly trait in PVY.


Subject(s)
Nicotiana , Phylogeny , Plant Diseases , Potyvirus , Viral Proteins , Amino Acid Sequence , Cysteine Endopeptidases/genetics , Cysteine Endopeptidases/metabolism , Molecular Sequence Data , Necrosis , Nicotiana/virology , Open Reading Frames/genetics , Plant Diseases/virology , Point Mutation , Potyvirus/genetics , Potyvirus/pathogenicity , Viral Proteins/genetics , Viral Proteins/metabolism
15.
Eur J Pharmacol ; 975: 176659, 2024 Jul 15.
Article in English | MEDLINE | ID: mdl-38762158

ABSTRACT

Obstructive sleep apnea syndrome (OSAS), characterized by repeated narrow or collapse of the upper airway during sleep, resulting in periodic reductions or cessations in ventilation, consequent hypoxia, hypercapnia, increased sympathetic activity and sleep fragmentation, places a serious burden on society and health care. Intermittent hypoxia (IH), which cause central nervous system (CNS) inflammation, and ultimately lead to neuropathy, is thought to be a crucial contributor to cognitive impairment in OSAS. Wnt signaling pathway exerts an important role in the regulation of CNS disorders. Particularly, it may be involved in the regulation of neuroinflammation and cognitive dysfunction. However, its underlying mechanism remains poorly understood. Accumulating evidence demonstrated that Wnt signaling pathway may inhibited in a variety of neurological disorders. Recently studies revealed that SUMOylation was participated in the regulation of neuroinflammation. Members of Wnt/ß-catenin pathway may be targets of SUMOylation. In vitro and in vivo molecular biology experiments explored the regulatory mechanism of SUMOylation on Wnt/ß-catenin in IH-induced neuroinflammation and neuronal injury, which demonstrated that IH induced the SUMOylation of ß-catenin, microglia mediated inflammation and neuronal damage. Moreover, SENP1 regulated the de-SUMOylation of ß-catenin, triggered Wnt/ß-catenin pathway, and alleviated neuroinflammation and neuronal injury, thus improving IH-related mice cognitive dysfunction.


Subject(s)
Cognitive Dysfunction , Cysteine Endopeptidases , Hypoxia , Microglia , Sumoylation , Wnt Signaling Pathway , Animals , Microglia/metabolism , Microglia/pathology , Cognitive Dysfunction/metabolism , Cognitive Dysfunction/etiology , Mice , Cysteine Endopeptidases/metabolism , Hypoxia/complications , Hypoxia/metabolism , Male , beta Catenin/metabolism , Mice, Inbred C57BL , Neuroinflammatory Diseases/metabolism , Inflammation/metabolism , Inflammation/pathology , Sleep Apnea, Obstructive/complications , Sleep Apnea, Obstructive/metabolism , Sleep Apnea, Obstructive/physiopathology , Humans , Disease Models, Animal
16.
Proc Natl Acad Sci U S A ; 121(22): e2314619121, 2024 May 28.
Article in English | MEDLINE | ID: mdl-38776375

ABSTRACT

Humoral immunity depends on the germinal center (GC) reaction where B cells are tightly controlled for class-switch recombination and somatic hypermutation and finally generated into plasma and memory B cells. However, how protein SUMOylation regulates the process of the GC reaction remains largely unknown. Here, we show that the expression of SUMO-specific protease 1 (SENP1) is up-regulated in GC B cells. Selective ablation of SENP1 in GC B cells results in impaired GC dark and light zone organization and reduced IgG1-switched GC B cells, leading to diminished production of class-switched antibodies with high-affinity in response to a TD antigen challenge. Mechanistically, SENP1 directly binds to Paired box protein 5 (PAX5) to mediate PAX5 deSUMOylation, sustaining PAX5 protein stability to promote the transcription of activation-induced cytidine deaminase. In summary, our study uncovers SUMOylation as an important posttranslational mechanism regulating GC B cell response.


Subject(s)
B-Lymphocytes , Cysteine Endopeptidases , Germinal Center , PAX5 Transcription Factor , Sumoylation , Germinal Center/immunology , Germinal Center/metabolism , PAX5 Transcription Factor/metabolism , PAX5 Transcription Factor/genetics , Animals , B-Lymphocytes/immunology , B-Lymphocytes/metabolism , Cysteine Endopeptidases/metabolism , Cysteine Endopeptidases/genetics , Mice , Immunoglobulin Class Switching , Humans , Cytidine Deaminase/metabolism , Cytidine Deaminase/genetics , Immunity, Humoral , Mice, Inbred C57BL
17.
Technol Cancer Res Treat ; 23: 15330338241257490, 2024.
Article in English | MEDLINE | ID: mdl-38803001

ABSTRACT

Objectives: This study aimed to investigate the effect of specific small ubiquitin-like modifier (SUMO) proteases 1 (SENP1)-mediated deSUMOylation on the malignant behavior of glioma stem cells (GSCs) under hypoxia conditions and evaluate the clinical value of prevention in glioma patients. Introductions: Under hypoxic conditions, upregulated hypoxia-inducible factor 1α (HIF1α) expression in GSCs activates Wnt/ß-catenin signaling pathways, which provide rich nutritional support for glioblastoma (GBM). SENP1-mediated deSUMOylation stabilizes the expression of HIF1α and ß-catenin, leading to the occurrence of GSCs-initiated tumorigenesis. Targeting SENP1-mediated deSUMOylation may suppress the malignancy of GSCs and disrupt GBM progression. Methods: The expression of SENP1 in different World Health Organization grades was observed by immunohistochemistry and western blot. Lentivirus-packaged SENP1shRNA downregulated the expression of SENP1 in GSCs, and the downregulated results were verified by western blotting and polymerase chain reaction. The effects of LV-SENP1shRNA on the migration and proliferation of GSCs were detected by scratch and cloning experiments. The effect of LV-SENP1shRNA on the tumor formation ability of GSCs was observed in nude mice. Immunoprecipitation clarified the mechanism of SENP1 regulating the malignant behavior of GSCs under hypoxia. The correlation between the expression level of SENP1 and the survival of glioma patients was determined by statistical analysis. Results: SENP1 expression in GSCs derived from clinical samples was upregulated in GBM. SUMOylation was observed in GSCs in vitro, and deSUMOylation, accompanied by an increase in SENP1 expression, was induced by hypoxia. SENP1 expression was downregulated in GSCs with lentivirus-mediated stable transfection, which attenuated the proliferation and differentiation of GSCs, thus diminishing tumorigenesis. Mechanistically, HIF1α induced activation of Wnt/ß-catenin, which depended on SENP1-mediated deSUMOylation, promoting GSC-driven GBM growth under the hypoxia microenvironment. Conclusion: Our findings indicate that SENP1-mediated deSUMOylation as a feature of GSCs is essential for GBM maintenance, suggesting that targeting SENP1 against GSCs may effectively improve GBM therapeutic efficacy.


Subject(s)
Cell Proliferation , Cysteine Endopeptidases , Glioma , Neoplastic Stem Cells , Sumoylation , Humans , Animals , Cysteine Endopeptidases/metabolism , Cysteine Endopeptidases/genetics , Neoplastic Stem Cells/metabolism , Neoplastic Stem Cells/pathology , Mice , Glioma/pathology , Glioma/metabolism , Glioma/genetics , Hypoxia-Inducible Factor 1, alpha Subunit/metabolism , Hypoxia-Inducible Factor 1, alpha Subunit/genetics , Cell Line, Tumor , Gene Expression Regulation, Neoplastic , Brain Neoplasms/metabolism , Brain Neoplasms/pathology , Brain Neoplasms/genetics , Wnt Signaling Pathway , Female , Male , Cell Movement/genetics , Mice, Nude , Cell Hypoxia , Xenograft Model Antitumor Assays
18.
Int J Biol Macromol ; 271(Pt 1): 132505, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38768911

ABSTRACT

Proteases, essential regulators of plant stress responses, remain enigmatic in their precise functional roles. By employing activity-based probes for real-time monitoring, this study aimed to delve into protease activities in Chlamydomonas reinhardtii exposed to oxidative stress induced by hydrogen peroxide. However, our work revealed that the activity-based probes strongly labelled three non-proteolytic proteins-PsbO, PsbP, and PsbQ-integral components of photosystem II's oxygen-evolving complex. Subsequent biochemical assays and mass spectrometry experiments revealed the involvement of CrCEP1, a previously uncharacterized papain-like cysteine protease, as the catalyst of this labelling reaction. Further experiments with recombinant CrCEP1 and PsbO proteins replicated the reaction in vitro. Our data unveiled that endopeptidase CrCEP1 also has transpeptidase activity, ligating probes and peptides to the N-termini of Psb proteins, thereby expanding the repertoire of its enzymatic activities. The hitherto unknown transpeptidase activity of CrCEP1, working in conjunction with its proteolytic activity, unveils putative complex and versatile roles for proteases in cellular processes during stress responses.


Subject(s)
Chlamydomonas reinhardtii , Cysteine Proteases , Cysteine Proteases/metabolism , Cysteine Proteases/chemistry , Chlamydomonas reinhardtii/enzymology , Oxidative Stress , Photosystem II Protein Complex/metabolism , Photosystem II Protein Complex/chemistry , Plant Proteins/metabolism , Plant Proteins/chemistry , Hydrogen Peroxide/metabolism , Cysteine Endopeptidases/metabolism , Cysteine Endopeptidases/chemistry
19.
Chemistry ; 30(38): e202401103, 2024 Jul 05.
Article in English | MEDLINE | ID: mdl-38716707

ABSTRACT

This review covers the most recent advances in the development of inhibitors for the bacterial enzyme sortase A (SrtA). Sortase A (SrtA) is a critical virulence factor, present ubiquitously in Gram-positive bacteria of which many are pathogenic. Sortases are key enzymes regulating bacterial adherence to host cells, by anchoring extracellular matrix-binding proteins to the bacterial outer cell wall. By targeting virulence factors, effective treatment can be achieved, without inducing antibiotic resistance to the treatment. This is a potentially more sustainable, long-term approach to treating bacterial infections, including ones that display multiple resistance to current therapeutics. There are many promising approaches available for SrtA inhibition, some of which have the potential to advance into further clinical development, with peptidomimetic and in vivo active small molecules being among the most promising. There are currently no approved drugs on the market targeting SrtA, despite its promise, adding to the relevance of this review article, as it extends to the pharmaceutical industry additionally to academic researchers.


Subject(s)
Aminoacyltransferases , Anti-Bacterial Agents , Bacterial Proteins , Cysteine Endopeptidases , Peptidomimetics , Small Molecule Libraries , Aminoacyltransferases/antagonists & inhibitors , Aminoacyltransferases/metabolism , Cysteine Endopeptidases/metabolism , Cysteine Endopeptidases/chemistry , Peptidomimetics/chemistry , Peptidomimetics/pharmacology , Bacterial Proteins/antagonists & inhibitors , Bacterial Proteins/metabolism , Bacterial Proteins/chemistry , Anti-Bacterial Agents/chemistry , Anti-Bacterial Agents/pharmacology , Small Molecule Libraries/chemistry , Small Molecule Libraries/pharmacology , Small Molecule Libraries/therapeutic use , Humans , Enzyme Inhibitors/chemistry , Enzyme Inhibitors/pharmacology , Enzyme Inhibitors/therapeutic use , Gram-Positive Bacteria/drug effects
20.
Trends Biochem Sci ; 49(7): 596-610, 2024 Jul.
Article in English | MEDLINE | ID: mdl-38692993

ABSTRACT

Sortase enzymes are critical cysteine transpeptidases on the surface of bacteria that attach proteins to the cell wall and are involved in the construction of bacterial pili. Due to their ability to recognize specific substrates and covalently ligate a range of reaction partners, sortases are widely used in protein engineering applications via sortase-mediated ligation (SML) strategies. In this review, we discuss recent structural studies elucidating key aspects of sortase specificity and the catalytic mechanism. We also highlight select recent applications of SML, including examples where fundamental studies of sortase structure and function have informed the continued development of these enzymes as tools for protein engineering.


Subject(s)
Aminoacyltransferases , Bacterial Proteins , Cysteine Endopeptidases , Protein Engineering , Cysteine Endopeptidases/metabolism , Cysteine Endopeptidases/chemistry , Aminoacyltransferases/metabolism , Aminoacyltransferases/chemistry , Bacterial Proteins/metabolism , Bacterial Proteins/chemistry , Substrate Specificity , Models, Molecular
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