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1.
Biomed Res Int ; 2015: 847945, 2015.
Article in English | MEDLINE | ID: mdl-25705691

ABSTRACT

Very few studies have been conducted on alkaline adaptation of Gram-negative alkaliphiles. The reversed difference of H(+) concentration across the membrane will make energy production considerably difficult for Gram-negative as well as Gram-positive bacteria. Cells of the alkaliphilic Gram-negative bacterium Pseudomonas alcaliphila AL15-21(T) grown at pH 10 under low-aeration intensity have a soluble cytochrome c content that is 3.6-fold higher than that of the cells grown at pH 7 under high-aeration intensity. Cytochrome c-552 content was higher (64% in all soluble cytochromes c) than those of cytochrome c-554 and cytochrome c-551. In the cytochrome c-552-dificient mutant grown at pH 10 under low-aeration intensity showed a marked decrease in µ max⁡ [h(-1)] (40%) and maximum cell turbidity (25%) relative to those of the wild type. Considering the high electron-retaining abilities of the three soluble cytochromes c, the deteriorations in the growth of the cytochrome c-552-deficient mutant could be caused by the soluble cytochromes c acting as electron storages in the periplasmic space of the bacterium. These electron-retaining cytochromes c may play a role as electron and H(+) condenser, which facilitate terminal oxidation at high pH under air-limited conditions, which is difficult to respire owing to less oxygen and less H(+).


Subject(s)
Adaptation, Physiological/drug effects , Alkalies/pharmacology , Energy Metabolism , Pseudomonas/drug effects , Bacterial Proteins/biosynthesis , Cytochrome c Group/biosynthesis , Hydrogen-Ion Concentration , Oxidation-Reduction , Pseudomonas/metabolism , Pseudomonas/physiology
2.
PLoS One ; 8(11): e78466, 2013.
Article in English | MEDLINE | ID: mdl-24244312

ABSTRACT

The dissimilatory metal reducing bacterium Shewanella oneidensis MR-1, known for its capacity of reducing iron and manganese oxides, has great environmental impacts. The iron oxides reducing process is affected by the coexistence of alternative electron acceptors in the environment, while investigation into it is limited so far. In this work, the impact of dimethyl sulphoxide (DMSO), a ubiquitous chemical in marine environment, on the reduction of hydrous ferric oxide (HFO) by S. oneidensis MR-1 was investigated. Results show that DMSO promoted HFO reduction by both wild type and ΔdmsE, but had no effect on the HFO reduction by ΔdmsB, indicating that such a promotion was dependent on the DMSO respiration. With the DMSO dosing, the levels of extracellular flavins and omcA expression were significantly increased in WT and further increased in ΔdmsE. Bioelectrochemical analysis show that DMSO also promoted the extracellular electron transfer of WT and ΔdmsE. These results demonstrate that DMSO could stimulate the HFO reduction through metabolic and genetic regulation in S. oneidensis MR-1, rather than compete for electrons with HFO. This may provide a potential respiratory pathway to enhance the microbial electron flows for environmental and engineering applications.


Subject(s)
Cryoprotective Agents/pharmacology , Dimethyl Sulfoxide/pharmacology , Ferric Compounds/metabolism , Shewanella/metabolism , Bacterial Proteins/biosynthesis , Cytochrome c Group/biosynthesis , Gene Expression Regulation, Bacterial/drug effects , Gene Expression Regulation, Enzymologic/drug effects , Oxidation-Reduction/drug effects
3.
Environ Microbiol Rep ; 5(6): 904-10, 2013 Dec.
Article in English | MEDLINE | ID: mdl-24249299

ABSTRACT

Direct interspecies electron transfer (DIET) through biological electrical connections is an alternative to interspecies H2 transfer as a mechanism for electron exchange in syntrophic cultures. However, it has not previously been determined whether electrons received via DIET yield energy to support cell growth. In order to investigate this, co-cultures of Geobacter metallireducens, which can transfer electrons to wild-type G. sulfurreducens via DIET, were established with a citrate synthase-deficient G. sulfurreducens strain that can receive electrons for respiration through DIET only. In a medium with ethanol as the electron donor and fumarate as the electron acceptor, co-cultures with the citrate synthase-deficient G. sulfurreducens strain metabolized ethanol as fast as co-cultures with wild-type, but the acetate that G. metallireducens generated from ethanol oxidation accumulated. The lack of acetate metabolism resulted in less fumarate reduction and lower cell abundance of G. sulfurreducens. RNAseq analysis of transcript abundance was consistent with a lack of acetate metabolism in G. sulfurreducens and revealed gene expression levels for the uptake hydrogenase, formate dehydrogenase, the pilus-associated c-type cytochrome OmcS and pili consistent with electron transfer via DIET. These results suggest that electrons transferred via DIET can serve as the sole energy source to support anaerobic respiration.


Subject(s)
Citrate (si)-Synthase/genetics , Electron Transport , Energy Metabolism , Geobacter/metabolism , Acetates/metabolism , Anaerobiosis , Citrate (si)-Synthase/deficiency , Cytochrome c Group/biosynthesis , Cytochrome c Group/genetics , Electrons , Ethanol/chemistry , Fimbriae, Bacterial/genetics , Formate Dehydrogenases/biosynthesis , Formate Dehydrogenases/genetics , Fumarates/chemistry , Geobacter/genetics , Oxidation-Reduction
5.
Genetics ; 187(3): 793-802, 2011 Mar.
Article in English | MEDLINE | ID: mdl-21220358

ABSTRACT

In plastids, the conversion of energy in the form of light to ATP requires key electron shuttles, the c-type cytochromes, which are defined by the covalent attachment of heme to a CXXCH motif. Plastid c-type cytochrome biogenesis occurs in the thylakoid lumen and requires a system for transmembrane transfer of reductants. Previously, CCDA and CCS5/HCF164, found in all plastid-containing organisms, have been proposed as two components of the disulfide-reducing pathway. In this work, we identify a small novel protein, CCS4, as a third component in this pathway. CCS4 was genetically identified in the green alga Chlamydomonas reinhardtii on the basis of the rescue of the ccs4 mutant, which is blocked in the synthesis of holoforms of plastid c-type cytochromes, namely cytochromes f and c(6). Although CCS4 does not display sequence motifs suggestive of redox or heme-binding function, biochemical and genetic complementation experiments suggest a role in the disulfide-reducing pathway required for heme attachment to apoforms of cytochromes c. Exogenous thiols partially rescue the growth phenotype of the ccs4 mutant concomitant with recovery of holocytochrome f accumulation, as does expression of an ectopic copy of the CCDA gene, encoding a trans-thylakoid transporter of reducing equivalents. We suggest that CCS4 might function to stabilize CCDA or regulate its activity.


Subject(s)
Chlamydomonas reinhardtii/genetics , Chlamydomonas reinhardtii/metabolism , Cytochrome c Group/biosynthesis , Cytochrome c Group/metabolism , Cytochromes c/genetics , Cytochromes c/metabolism , Photosynthesis/genetics , Amino Acid Sequence , Chloroplasts/genetics , Chloroplasts/metabolism , Cytochrome c Group/genetics , Cytochromes f/genetics , Cytochromes f/metabolism , Disulfides/metabolism , Heme/genetics , Heme/metabolism , Molecular Sequence Data , Mutant Proteins/chemistry , Mutant Proteins/metabolism , Oxidation-Reduction , Plastids/genetics , Plastids/metabolism , Thylakoids/genetics , Thylakoids/metabolism
6.
J Bacteriol ; 189(12): 4410-7, 2007 Jun.
Article in English | MEDLINE | ID: mdl-17449618

ABSTRACT

Successful pathogens must be able to protect themselves against reactive nitrogen species generated either as part of host defense mechanisms or as products of their own metabolism. The regulatory protein NsrR (a member of the Rrf2 family of transcription factors) plays key roles in this stress response. Microarray analysis revealed that NsrR represses nine operons encoding 20 genes in Escherichia coli MG1655, including the hmpA, ytfE, and ygbA genes that were previously shown to be regulated by NsrR. Novel NsrR targets revealed by this study include hcp-hcr (which were predicted in a recent bioinformatic study to be NsrR regulated) and the well-studied nrfA promoter that directs the expression of the periplasmic respiratory nitrite reductase. Conversely, transcription from the ydbC promoter is strongly activated by NsrR. Regulation of the nrf operon by NsrR is consistent with the ability of the periplasmic nitrite reductase to reduce nitric oxide and hence protect against reactive nitrogen species. Gel retardation assays were used to show that both FNR and NarL bind to the hcp promoter. The expression of hcp and the contiguous gene hcr is not induced by hydroxylamine. As hmpA and ytfE encode a nitric oxide reductase and a mechanism to repair iron-sulfur centers damaged by nitric oxide, the demonstration that hcp-hcr, hmpA, and ytfE are the three transcripts most tightly regulated by NsrR highlights the possibility that the hybrid cluster protein, HCP, might also be part of a defense mechanism against reactive nitrogen stress.


Subject(s)
Cytochrome c Group/biosynthesis , Escherichia coli K12/genetics , Escherichia coli Proteins/biosynthesis , Gene Expression Regulation, Bacterial , Iron-Sulfur Proteins/biosynthesis , Reactive Nitrogen Species/metabolism , Regulon/genetics , Transcription Factors/physiology , Chimera , Cytochrome c Group/genetics , Cytochrome c Group/metabolism , DNA, Bacterial/genetics , DNA, Bacterial/metabolism , DNA-Binding Proteins/metabolism , Electrophoretic Mobility Shift Assay , Escherichia coli/genetics , Escherichia coli/metabolism , Escherichia coli Proteins/genetics , Escherichia coli Proteins/metabolism , Gene Deletion , Gene Expression Profiling , Genes, Regulator , Iron-Sulfur Proteins/genetics , Iron-Sulfur Proteins/metabolism , Oligonucleotide Array Sequence Analysis , Periplasmic Proteins/genetics , Promoter Regions, Genetic , Protein Binding , Transcription Factors/genetics , Transcription, Genetic
7.
Acc Chem Res ; 40(3): 171-8, 2007 Mar.
Article in English | MEDLINE | ID: mdl-17370988

ABSTRACT

Cytochromes are involved in a wide variety of redox reactions in living systems. Some of them contain multiple hemes such as Desulfovibrio cytochrome c3 and Shewanella small tetraheme cytochrome c. The significance of c-type tetraheme architectures was discussed. A cyclic heme architecture and its environment regulate the extremely low redox potentials of cytochrome c3 in addition to bis-imidazole coordination and heme exposure. Each heme in cytochrome c3 plays a different role in the electron transport to/from [NiFe] hydrogenase and the specific CO-binding. In contrast, the chain-like heme architecture in Shewanella small tetraheme cytochrome c and soluble fumarate reductase provides a pathway for directional electron transfer. Thus, the tetraheme architectures do not comprise simple heme assemblies but sophisticated devices.


Subject(s)
Cytochrome c Group/chemistry , Cytochromes c/chemistry , Heme/chemistry , Heme/physiology , Cytochrome c Group/biosynthesis , Cytochrome c Group/genetics , Cytochromes c/biosynthesis , Cytochromes c/genetics , Electron Transport , Escherichia coli/genetics , Molecular Conformation , Oxidation-Reduction , Plasmids/genetics , Protein Conformation , Shewanella/genetics
8.
Mol Microbiol ; 61(1): 219-31, 2006 Jul.
Article in English | MEDLINE | ID: mdl-16824107

ABSTRACT

Although organisms from all kingdoms have either the system I or II cytochrome c biogenesis pathway, it has remained a mystery as to why these two distinct pathways have developed. We have previously shown evidence that the system I pathway has a higher affinity for haem than system II for cytochrome c biogenesis. Here, we show the mechanism by which the system I pathway can utilize haem at low levels. The mechanism involves an ATP-binding cassette (ABC) transporter that is required for release of the periplasmic haem chaperone CcmE to the last step of cytochrome c assembly. This ABC transporter is composed of the ABC subunit CcmA, and two membrane proteins, CcmB and CcmC. In the absence of CcmA or CcmB, holo(haem)CcmE binds to CcmC in a stable dead-end complex, indicating high affinity binding of haem to CcmC. Expression of CcmA and CcmB facilitates formation of the CcmA2B1C1 complex and ATP-dependent release of holoCcmE. We propose that the CcmA2B1C1 complex represents a new subgroup within the ABC transporter superfamily that functions to release a chaperone.


Subject(s)
ATP-Binding Cassette Transporters/metabolism , Bacterial Outer Membrane Proteins/metabolism , Cytochrome c Group/biosynthesis , Heme/metabolism , Molecular Chaperones/metabolism , ATP-Binding Cassette Transporters/genetics , Apoproteins/metabolism , Bacterial Outer Membrane Proteins/genetics , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Biological Transport , Escherichia coli/genetics , Escherichia coli/metabolism , Escherichia coli Proteins/genetics , Escherichia coli Proteins/metabolism , Hemeproteins/biosynthesis , Hemeproteins/genetics , Hemeproteins/metabolism , Membrane Proteins/genetics , Membrane Proteins/metabolism , Models, Biological , Plasmids/genetics , Recombinant Fusion Proteins/metabolism
9.
Biochem Soc Trans ; 34(Pt 1): 146-9, 2006 Feb.
Article in English | MEDLINE | ID: mdl-16417506

ABSTRACT

c-Type cytochromes are a widespread class of proteins that play a vital role in the energy-conserving metabolism of prokaryotic and eukaryotic organisms. The key event in cytochrome c biogenesis is the covalent attachment of the haem cofactor to two (or rarely one) cysteine residues arranged in a haem c-binding motif such as CX(2-4)CH, CXXCK or X(3)CH. This reaction is catalysed by the membrane-bound enzyme CCHL (cytochrome c haem lyase). Different CCHLs have been described and some of them are dedicated to distinct haem c-binding motifs of cytochromes that are encoded in the vicinity of the respective CCHL gene. Various bacterial genomes contain multiple copies of CCHL-encoding genes, suggesting the presence of non-conventional or even as yet unrecognized haem c-binding motifs. This assumption is exemplified in the present study using the proteobacterium Wolinella succinogenes as a model organism whose genome encodes three CCHL isoenzymes. The discovery of a novel conserved multihaem cytochrome c (MccA) is described.


Subject(s)
Bacterial Proteins/genetics , Cytochrome c Group/biosynthesis , Heme/metabolism , Lyases/genetics , Amino Acid Motifs , Bacterial Proteins/metabolism , Isoenzymes/genetics , Isoenzymes/metabolism , Lyases/metabolism , Substrate Specificity , Wolinella/enzymology , Wolinella/genetics
10.
Biochem Soc Trans ; 34(Pt 1): 150-1, 2006 Feb.
Article in English | MEDLINE | ID: mdl-16417507

ABSTRACT

c-Type cytochromes are characterized by covalent attachment of haem to protein through thioether bonds between the vinyl groups of the haem and the thiols of a CXXCH motif. Proteins of this type play crucial roles in the biochemistry of the nitrogen cycle. Many Gram-negative bacteria use the Ccm (cytochrome c maturation) proteins for the post-translational haem attachment to their c-type cytochromes; in the present paper, we discuss the substrate specificity of the Ccm apparatus. The main conclusion is that the feature recognized and required in the apocytochrome is simply the two cysteines and the histidine of the haem-binding motif.


Subject(s)
Bacterial Proteins/metabolism , Cytochrome c Group/biosynthesis , Membrane Proteins/metabolism , Amino Acid Motifs , Bacterial Proteins/genetics , Heme/metabolism , Membrane Proteins/genetics , Substrate Specificity
11.
Protein Expr Purif ; 42(2): 227-35, 2005 Aug.
Article in English | MEDLINE | ID: mdl-15907384

ABSTRACT

Cytochrome caa3 from Bacillus subtilis is a member of the heme-copper oxidase family of integral membrane enzymes that includes mitochondrial cytochrome c oxidase. Subunit II of cytochrome caa3 has an extra 100 amino acids at its C-terminus, relative to its mitochondrial counterpart, and this extension encodes a heme C binding domain. Cytochrome caa3 has many of the properties of the complex formed between mitochondrial cytochrome c and mitochondrial cytochrome c oxidase. To examine more closely the interaction between cytochrome c and the oxidase we have cloned and expressed the Cu(A)-cytochrome c portion of subunit II from the cytochrome caa3 complex of B. subtilis. We are able to express about 2000 nmol, equivalent to 65 mg, of the Cu(A)-cytochrome c protein per litre of Escherichia coli culture. About 500 nmol is correctly targeted to the periplasmic space and we purify 50% of that by a combination of affinity chromatography and ammonium sulfate fractionation. The cytochrome c containing sub-domain is well-folded with a stable environment around the heme C center, as its mid-point potential and rates of reduction are indistinguishable from values for the cytochrome c domain of the holo-enzyme. However, the Cu(A) site lacks copper leading to an inherent instability in this sub-domain. Expression of B. subtilis cytochrome c, as exemplified by the Cu(A)-cytochrome c protein, can be achieved in E. coli, and we conclude that the cytochrome c and Cu(A) sub-domains behave independently despite their close physical and functional association.


Subject(s)
Bacillus subtilis/enzymology , Bacillus subtilis/genetics , Cytochrome c Group/genetics , Cytochrome c Group/isolation & purification , Cytochromes a3/genetics , Cytochromes a3/isolation & purification , Cytochromes a/genetics , Cytochromes a/isolation & purification , Cytochromes c/chemistry , Escherichia coli/genetics , Protein Subunits/chemistry , Cloning, Molecular , Cytochrome c Group/biosynthesis , Cytochrome c Group/chemistry , Cytochromes a/biosynthesis , Cytochromes a/chemistry , Cytochromes a3/biosynthesis , Cytochromes a3/chemistry , Protein Structure, Tertiary , Recombinant Proteins/biosynthesis , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/isolation & purification
12.
Biochemistry ; 44(17): 6471-81, 2005 May 03.
Article in English | MEDLINE | ID: mdl-15850381

ABSTRACT

The cyc1 gene encoding the soluble dihemic cytochrome c CYC(41) from Acidithiobacillus ferrooxidans, an acidophilic organism, has been cloned and expressed in Escherichia coli as the host organism. The cytochrome was successfully produced and folded only in fermentative conditions: this allowed us to determine the molecular basis of the heme insertion at extreme pH. Point mutations at two sequence positions (E121 and Y63) were introduced near the two hemes in order to assign individual redox potentials to the hemes and to identify the interaction sites with the redox partners, rusticyanin and cytochrome oxidase. Characterization of mutants E121A, Y63A, and Y63F CYC(41) with biochemical and biophysical techniques were carried out. Substitution of tyrosine 63 by phenylalanine alters the environment of heme B. This result indicates that heme B has the lower redox potential. Interaction studies with the two physiological partners indicate that CYC(41) functions as an electron wire between RCy and cytochrome oxidase. A specific glutamate residue (E121) located near heme A is directly involved in the interaction with RCy. A docking analysis of CYC(41), RCy, and cytochrome oxidase allowed us to propose a model for the complex in agreement with our experimental data.


Subject(s)
Acidithiobacillus/enzymology , Cytochrome c Group/chemistry , Cytochrome c Group/physiology , Heme/analogs & derivatives , Heme/chemistry , Oxidoreductases/chemistry , Oxidoreductases/physiology , Acidithiobacillus/genetics , Azurin/chemistry , Cytochrome c Group/biosynthesis , Cytochrome c Group/genetics , Electron Spin Resonance Spectroscopy , Electron Transport/genetics , Electron Transport Complex IV/chemistry , Enzyme Stability , Escherichia coli/enzymology , Escherichia coli/genetics , Heme/metabolism , Hydrogen-Ion Concentration , Mutagenesis, Site-Directed , Oxidation-Reduction , Oxidoreductases/biosynthesis , Oxidoreductases/genetics , Recombinant Proteins/biosynthesis , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Surface Plasmon Resonance , Tyrosine/genetics
13.
Biochem J ; 383(Pt. 3): 537-42, 2004 Nov 01.
Article in English | MEDLINE | ID: mdl-15500440

ABSTRACT

The c-type cytochromes are characterized by the covalent attachment of haem to the polypeptide via thioether bonds formed from haem vinyl groups and, normally, the thiols of two cysteines in a CXXCH motif. Intriguingly, the mitochondrial cytochromes c and c1 from two euglenids and the Trypanosomatidae contain only a single cysteine within the haem-binding motif (XXXCH). There are three known distinct pathways by which c-type cytochromes are matured post-translationally in different organisms. The absence of genes encoding any of these c-type cytochrome biogenesis machineries is established here by analysis of six trypanosomatid genomes, and correlates with the presence of single-cysteine cytochromes c and c1. In contrast, we have identified a comprehensive catalogue of proteins required for a typical mitochondrial oxidative phosphorylation apparatus. Neither spontaneous nor catalysed maturation of the single-cysteine Trypanosoma brucei cytochrome c occurred in Escherichia coli. However, a CXXCH variant was matured by the E. coli cytochrome c maturation machinery, confirming the proposed requirement of the latter for two cysteines in the haem-binding motif and indicating that T. brucei cytochrome c can accommodate a second cysteine in a CXXCH motif. The single-cysteine haem attachment conserved in cytochromes c and c1 of the trypanosomatids is suggested to be related to their cytochrome c maturation machinery, and the environment in the mitochondrial intermembrane space. Our genomic and biochemical studies provide very persuasive evidence that the trypanosomatid mitochondrial cytochromes c are matured by a novel biogenesis system.


Subject(s)
Cysteine/genetics , Cytochrome c Group/chemistry , Cytochrome c Group/genetics , Evolution, Molecular , Mitochondria/enzymology , Trypanosoma brucei brucei/enzymology , Amino Acid Motifs/genetics , Animals , Cytochrome c Group/biosynthesis , Genetic Variation/genetics , Mitochondrial Proteins/biosynthesis , Mitochondrial Proteins/chemistry , Mitochondrial Proteins/genetics , Recombinant Proteins/biosynthesis , Recombinant Proteins/genetics
14.
J Comp Neurol ; 475(1): 1-18, 2004 Jul 12.
Article in English | MEDLINE | ID: mdl-15176081

ABSTRACT

Aminoglycoside treatment induces caspase-dependent apoptotic death in inner ear sensory hair cells. The timing of apoptotic signaling in sensory hair cells following systemic aminoglycoside treatment has not been characterized in vivo. We administered a single subcutaneous injection of the aminoglycoside gentamicin (300 mg/kg) to 12-16-day-old chicks and used immunocytochemical techniques to document the following responses in affected hair cells: T-cell restricted intracellular antigen-related protein (TIAR) translocation from the nucleus to the cytoplasm, cytochrome c release from the mitochondria, caspase-3 activation, nuclear condensation, and an orderly progression of hair cell ejection from the proximal end of the basilar papilla. Hair cells in the proximal tip exhibited TIAR translocation from the nucleus and aggregation into punctate granules in the cytoplasm 12 hours after injection and the response progressed distally. Cytochrome c release from the mitochondria into the cytoplasm and caspase-3 activation were observed in affected hair cells immediately prior to and during ejection. Hair cell ejection occurred between 30 and 54 hours after injection, beginning in the proximal tip and progressing distally. Nuclear condensation accompanied ejection while the loss of: 1) membrane integrity; 2) phalloidin labeling of F-actin; and 3) TO-PRO-1 labeling of nuclear contents occurred within 48 hours following ejection. Our results present a timeline of aminoglycoside-induced inner ear sensory hair cell apoptotic death that includes an 18-hour window between the initial apoptotic response and the later stages of programmed death signaling that accompany ejection and a gradual breakdown of hair cells following ejection.


Subject(s)
Apoptosis/drug effects , Chickens/metabolism , Gentamicins/pharmacology , Hair Cells, Auditory, Inner/drug effects , Animals , Apoptosis/physiology , Biomarkers/analysis , Caspases/analysis , Caspases/biosynthesis , Cochlea/chemistry , Cochlea/drug effects , Cochlea/metabolism , Cytochrome c Group/analysis , Cytochrome c Group/biosynthesis , Hair Cells, Auditory, Inner/chemistry , Hair Cells, Auditory, Inner/metabolism , RNA-Binding Proteins/analysis , RNA-Binding Proteins/biosynthesis , Time Factors
15.
Biophys J ; 85(5): 3367-74, 2003 Nov.
Article in English | MEDLINE | ID: mdl-14581238

ABSTRACT

Tyrosine 43 is positioned parallel to the fifth heme axial ligand, His34, of heme 1 in the tetraheme cytochrome c(3). The replacement of tyrosine with leucine increased the redox potential of heme 1 by 44 and 35 mV at the first and last reduction steps, respectively; its effects on the other hemes are small. In contrast, the Y43F mutation hardly changed the potentials. It shows that the aromatic ring at this position contributes to lowering the redox potential of heme 1 locally, although this cannot be the major contribution to the extremely low redox potentials of cytochrome c(3). Furthermore, temperature-dependent line-width broadening in partially reduced samples established that the aromatic ring at position 43 participates in the control of the kinetics of intramolecular electron transfer. The rate of reduction of Y43L cytochrome c(3) by 5-deazariboflavin semiquinone under partially reduced conditions was significantly different from that of the wild type in the last stage of the reduction, supporting the involvement of Tyr43 in regulation of reduction kinetics. The mutation of Y43L, however, did not induce a significant change in the crystal structure.


Subject(s)
Cytochrome c Group/chemistry , Cytochrome c Group/radiation effects , Desulfovibrio vulgaris/chemistry , Desulfovibrio vulgaris/enzymology , Heme/chemistry , Models, Molecular , Tyrosine/chemistry , Amino Acid Substitution , Computer Simulation , Cytochrome c Group/biosynthesis , Cytochrome c Group/genetics , Enzyme Activation , Enzyme Stability , Hydrocarbons, Aromatic/chemistry , Lasers , Mutagenesis, Site-Directed , Oxidation-Reduction , Photolysis , Protein Conformation , Recombinant Proteins , Structure-Activity Relationship
16.
Ann Neurol ; 54(3): 287-96, 2003 Sep.
Article in English | MEDLINE | ID: mdl-12953261

ABSTRACT

Human immunodeficiency virus (HIV)-associated sensory neuropathy (HIV-SN) is the most common neurological complication of HIV infection. Currently, the pathogenesis of HIV-SN is unknown. Because there is no convincing evidence of neuronal infection, HIV neurotoxicity is likely to be effected either by secreted viral proteins such as the envelope glycoprotein gp120 or by neurotoxic cytokines released from infected/activated glial cells. We describe a model of gp120 toxicity to primary sensory neurons, in which gp120 induces neuritic degeneration and neuronal apoptosis. We show that Schwann cells, the cells that ensheath peripheral nerve axons, and which traditionally have been viewed as having a passive, supporting role, mediate this neurotoxicity. Ligation of the chemokine receptor CXCR4 on Schwann cells by gp120 resulted in the release of RANTES, which induced dorsal root ganglion neurons to produce tumor necrosis factor-alpha and subsequent TNFR1-mediated neurotoxicity in an autocrine fashion. This newly described Schwann cell-neuron interaction may be pathogenically relevant not only in HIV-SN but also in other peripheral neuropathies.


Subject(s)
HIV Envelope Protein gp120/toxicity , HIV-1 , Neurons, Afferent/cytology , Receptors, CXCR4/metabolism , Animals , Cells, Cultured , Chemokine CCL5/biosynthesis , Chemokine CXCL12 , Chemokines, CXC/metabolism , Cytochrome c Group/biosynthesis , Dose-Response Relationship, Drug , Enzyme-Linked Immunosorbent Assay , Ganglia, Spinal/metabolism , Immunohistochemistry , In Situ Nick-End Labeling , Models, Animal , Nerve Degeneration/metabolism , Nerve Degeneration/pathology , Nerve Degeneration/virology , Neurons, Afferent/drug effects , Neurons, Afferent/metabolism , Neurons, Afferent/pathology , Peripheral Nervous System Diseases/virology , Rats , Rats, Sprague-Dawley , Receptors, CXCR4/antagonists & inhibitors , Schwann Cells/metabolism , Tumor Necrosis Factor-alpha/biosynthesis
17.
Eur J Biochem ; 270(18): 3778-86, 2003 Sep.
Article in English | MEDLINE | ID: mdl-12950261

ABSTRACT

Exposure of mammalian cells to oxidant stress causes early (iron catalysed) lysosomal rupture followed by apoptosis or necrosis. Enhanced intracellular production of reactive oxygen species (ROS), presumably of mitochondrial origin, is also observed when cells are exposed to nonoxidant pro-apoptotic agonists of cell death. We hypothesized that ROS generation in this latter case might promote the apoptotic cascade and could arise from effects of released lysosomal materials on mitochondria. Indeed, in intact cells (J774 macrophages, HeLa cells and AG1518 fibroblasts) the lysosomotropic detergent O-methyl-serine dodecylamide hydrochloride (MSDH) causes lysosomal rupture, enhanced intracellular ROS production, and apoptosis. Furthermore, in mixtures of rat liver lysosomes and mitochondria, selective rupture of lysosomes by MSDH promotes mitochondrial ROS production and cytochrome c release, whereas MSDH has no direct effect on ROS generation by purifed mitochondria. Intracellular lysosomal rupture is associated with the release of (among other constituents) cathepsins and activation of phospholipase A2 (PLA2). We find that addition of purified cathepsins B or D, or of PLA2, causes substantial increases in ROS generation by purified mitochondria. Furthermore, PLA2 - but not cathepsins B or D - causes rupture of semipurified lysosomes, suggesting an amplification mechanism. Thus, initiation of the apoptotic cascade by nonoxidant agonists may involve early release of lysosomal constituents (such as cathepsins B and D) and activation of PLA2, leading to enhanced mitochondrial oxidant production, further lysosomal rupture and, finally, mitochondrial cytochrome c release. Nonoxidant agonists of apoptosis may, thus, act through oxidant mechanisms.


Subject(s)
Apoptosis/physiology , Cytochrome c Group/biosynthesis , Hydrogen Peroxide/metabolism , Lysosomes/enzymology , Mitochondria, Liver/metabolism , Serine/analogs & derivatives , Superoxides/metabolism , Amides/pharmacology , Animals , Apoptosis/drug effects , Cathepsins/biosynthesis , Cathepsins/pharmacology , Cell Line , Cytochrome c Group/metabolism , Enzyme Activation/drug effects , Enzyme Activation/physiology , Female , Fibroblasts/drug effects , Fibroblasts/metabolism , Fibroblasts/ultrastructure , HeLa Cells , Humans , Lysosomes/drug effects , Macrophages/metabolism , Microscopy, Fluorescence , Oxidative Stress/physiology , Phospholipases A/metabolism , Phospholipases A/pharmacology , Phospholipases A2 , Rats , Rats, Sprague-Dawley , Serine/pharmacology , Stress Fibers/drug effects
18.
J Bacteriol ; 185(15): 4564-71, 2003 Aug.
Article in English | MEDLINE | ID: mdl-12867466

ABSTRACT

The bacterium Shewanella frigidimarina can grow anaerobically by utilizing Fe(III) as a respiratory electron acceptor. This results in the synthesis of a number of periplasmic c-type cytochromes, which are absent when the organism is grown in the absence of added Fe(III). One cytochrome, IfcA, is synthesized when Fe(III) is present as the sole respiratory electron acceptor or when it is present in combination with oxygen, fumarate, or nitrate. The ifcA gene was thus selected for a study of iron-responsive gene regulation of respiratory proteins in S. frigidimarina. The monocistronic ifcA gene clusters with two other monocistronic genes, ifcO, encoding a putative outer membrane porin, and ifcR, encoding a putative transcriptional regulator of the LysR superfamily. Analysis of transcription of all three genes under a range of growth conditions in the wild type and an ifcR insertion mutant and analysis of a strain that constitutively expresses ifcR revealed that iron regulation is exerted at the level of ifcR transcription. In the presence of Fe(III) IfcR is synthesized and acts positively to regulate expression of ifcO and ifcA. Control of Fe(III) respiration by this novel regulatory system differs markedly from Fur-mediated regulation of iron assimilation, in which Fur serves as an Fe(II)-activated repressor.


Subject(s)
Bacterial Proteins/metabolism , Cytochrome c Group/biosynthesis , Ferric Compounds/metabolism , Gene Expression Regulation, Bacterial , Oxidoreductases/biosynthesis , Shewanella/enzymology , Transcription, Genetic , Bacterial Proteins/genetics , Base Sequence , Cytochrome c Group/genetics , Enzyme Induction , Iron/metabolism , Molecular Sequence Data , Oxidoreductases/genetics , Sequence Analysis, DNA , Shewanella/genetics , Shewanella/physiology
19.
J Bacteriol ; 185(11): 3361-72, 2003 Jun.
Article in English | MEDLINE | ID: mdl-12754234

ABSTRACT

The cytoplasmic membrane protein CcdA and its homologues in other species, such as DsbD of Escherichia coli, are thought to supply the reducing equivalents required for the biogenesis of c-type cytochromes that occurs in the periplasm of gram-negative bacteria. CcdA-null mutants of the facultative phototroph Rhodobacter capsulatus are unable to grow under photosynthetic conditions (Ps(-)) and do not produce any active cytochrome c oxidase (Nadi(-)) due to a pleiotropic cytochrome c deficiency. However, under photosynthetic or respiratory growth conditions, these mutants revert frequently to yield Ps(+) Nadi(+) colonies that produce c-type cytochromes despite the absence of CcdA. Complementation of a CcdA-null mutant for the Ps(+) growth phenotype was attempted by using a genomic library constructed with chromosomal DNA from a revertant. No complementation was observed, but plasmids that rescued a CcdA-null mutant for photosynthetic growth by homologous recombination were recovered. Analysis of one such plasmid revealed that the rescue ability was mediated by open reading frame 3149, encoding the dithiol:disulfide oxidoreductase DsbA. DNA sequence data revealed that the dsbA allele on the rescuing plasmid contained a frameshift mutation expected to produce a truncated, nonfunctional DsbA. Indeed, a dsbA ccdA double mutant was shown to be Ps(+) Nadi(+), establishing that in R. capsulatus the inactivation of dsbA suppresses the c-type cytochrome deficiency due to the absence of ccdA. Next, the ability of the wild-type dsbA allele to suppress the Ps(+) growth phenotype of the dsbA ccdA double mutant was exploited to isolate dsbA-independent ccdA revertants. Sequence analysis revealed that these revertants carried mutations in dsbB and that their Ps(+) phenotypes could be suppressed by the wild-type allele of dsbB. As with dsbA, a dsbB ccdA double mutant was also Ps(+) Nadi(+) and produced c-type cytochromes. Therefore, the absence of either DsbA or DsbB restores c-type cytochrome biogenesis in the absence of CcdA. Finally, it was also found that the DsbA-null and DsbB-null single mutants of R. capsulatus are Ps(+) and produce c-type cytochromes, unlike their E. coli counterparts, but are impaired for growth under respiratory conditions. This finding demonstrates that in R. capsulatus the dithiol:disulfide oxidoreductases DsbA and DsbB are not essential for cytochrome c biogenesis even though they are important for respiration under certain conditions.


Subject(s)
Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Cytochrome c Group/biosynthesis , Membrane Proteins/metabolism , Mutation , Protein Disulfide-Isomerases/metabolism , Rhodobacter capsulatus/enzymology , Toluene/analogs & derivatives , Amino Acid Sequence , Base Sequence , Cytochrome c Group/genetics , Disulfides/metabolism , Gene Expression Regulation, Bacterial , Membrane Proteins/genetics , Molecular Sequence Data , Oxidoreductases/metabolism , Photosynthesis , Protein Disulfide-Isomerases/genetics , Rhodobacter capsulatus/genetics , Rhodobacter capsulatus/growth & development , Sequence Analysis, DNA , Toluene/metabolism
20.
Protein Expr Purif ; 29(2): 244-51, 2003 Jun.
Article in English | MEDLINE | ID: mdl-12767816

ABSTRACT

The nirM gene encoding cytochrome c-551 from Pseudomonas stutzeri Zobell (PZ) has been expressed in Escherichia coli at levels higher than those previously reported but only under strict anaerobic growth conditions. Expression yields for wild-type cytochrome in this study typically reached 0.6 micromol per liter of saturated E. coli culture (5.5mg/L). Culture conditions investigated are compared to obtained c-551 expression levels; the results may lead to a greater understanding of the challenges encountered when expressing c-type hemoproteins in E. coli. The nirM gene was mutated to produce a histidine-47-alanine mutation of c-551 that been heterologously expressed in E. coli using optimum culture conditions and had its physiochemical properties compared to those of the wild-type protein. In PZ, the histidine-47 residue is part of a conserved hydrogen-bonding network located at the bottom of the heme crevice that also involves tryptophan-56 and a heme propionate. Ionization events within this network are experimentally demonstrated to modulate c-551 oxidation-reduction potential and its observed dependence on pH around neutrality. The redox potential of the mutant cytochrome still displays pH-dependence; however, the midpoint potential is approximately 25mV lower with respect to wild-type c-551 at neutral pH while the pK at which the heme propionate (HP-17) ionizes is lowered by 1.3 pH units. Temperature and chemical denaturant studies also show that loss of the hydrogen-bond-donating imidazole leads to a large decrease in c-551 tertiary stability.


Subject(s)
Bacterial Proteins/biosynthesis , Bacterial Proteins/genetics , Cytochrome c Group/biosynthesis , Cytochrome c Group/genetics , Escherichia coli/enzymology , Pseudomonas/enzymology , Alanine/genetics , Amino Acid Sequence , Amino Acid Substitution , Bacterial Proteins/chemistry , Bacterial Proteins/metabolism , Cytochrome c Group/chemistry , Cytochrome c Group/metabolism , Enzyme Stability , Escherichia coli/genetics , Guanidine/pharmacology , Histidine/genetics , Hot Temperature , Hydrogen Bonding , Hydrogen-Ion Concentration , Kinetics , Oxidation-Reduction , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/metabolism
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