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1.
Life Sci Alliance ; 7(9)2024 Sep.
Article in English | MEDLINE | ID: mdl-38955468

ABSTRACT

In addition to mitochondrial DNA, mitochondrial double-stranded RNA (mtdsRNA) is exported from mitochondria. However, specific channels for RNA transport have not been demonstrated. Here, we begin to characterize channel candidates for mtdsRNA export from the mitochondrial matrix to the cytosol. Down-regulation of SUV3 resulted in the accumulation of mtdsRNAs in the matrix, whereas down-regulation of PNPase resulted in the export of mtdsRNAs to the cytosol. Targeting experiments show that PNPase functions in both the intermembrane space and matrix. Strand-specific sequencing of the double-stranded RNA confirms the mitochondrial origin. Inhibiting or down-regulating outer membrane proteins VDAC1/2 and BAK/BAX or inner membrane proteins PHB1/2 strongly attenuated the export of mtdsRNAs to the cytosol. The cytosolic mtdsRNAs subsequently localized to large granules containing the stress protein TIA-1 and activated the type 1 interferon stress response pathway. Abundant mtdsRNAs were detected in a subset of non-small-cell lung cancer cell lines that were glycolytic, indicating relevance in cancer biology. Thus, we propose that mtdsRNA is a new damage-associated molecular pattern that is exported from mitochondria in a regulated manner.


Subject(s)
Cytosol , Mitochondria , Prohibitins , RNA, Double-Stranded , RNA, Mitochondrial , Humans , Cytosol/metabolism , Mitochondria/metabolism , RNA, Double-Stranded/metabolism , RNA, Mitochondrial/metabolism , RNA, Mitochondrial/genetics , Cell Line, Tumor , Repressor Proteins/metabolism , Repressor Proteins/genetics , RNA Transport , Exoribonucleases/metabolism , Exoribonucleases/genetics , Voltage-Dependent Anion Channel 1/metabolism , Voltage-Dependent Anion Channel 1/genetics , Carcinoma, Non-Small-Cell Lung/metabolism , Carcinoma, Non-Small-Cell Lung/genetics , Carcinoma, Non-Small-Cell Lung/pathology , Mitochondrial Proteins
2.
Nat Commun ; 15(1): 5808, 2024 Jul 10.
Article in English | MEDLINE | ID: mdl-38987546

ABSTRACT

Recently, targeted degradation has emerged as a powerful therapeutic modality. Relying on "event-driven" pharmacology, proteolysis targeting chimeras (PROTACs) can degrade targets and are superior to conventional inhibitors against undruggable proteins. Unfortunately, PROTAC discovery is limited by warhead scarcity and laborious optimization campaigns. To address these shortcomings, analogous protein-based heterobifunctional degraders, known as bioPROTACs, have been developed. Compared to small-molecule PROTACs, bioPROTACs have higher success rates and are subject to fewer design constraints. However, the membrane impermeability of proteins severely restricts bioPROTAC deployment as a generalized therapeutic modality. Here, we present an engineered bioPROTAC template able to complex with cationic and ionizable lipids via electrostatic interactions for cytosolic delivery. When delivered by biocompatible lipid nanoparticles, these modified bioPROTACs can rapidly degrade intracellular proteins, exhibiting near-complete elimination (up to 95% clearance) of targets within hours of treatment. Our bioPROTAC format can degrade proteins localized to various subcellular compartments including the mitochondria, nucleus, cytosol, and membrane. Moreover, substrate specificity can be easily reprogrammed, allowing modular design and targeting of clinically-relevant proteins such as Ras, Jnk, and Erk. In summary, this work introduces an inexpensive, flexible, and scalable platform for efficient intracellular degradation of proteins that may elude chemical inhibition.


Subject(s)
Lipids , Proteolysis , Humans , Proteolysis/drug effects , Lipids/chemistry , Nanoparticles/chemistry , Animals , Cytosol/metabolism , Drug Delivery Systems , Recombinant Proteins/metabolism , Mice , Liposomes
3.
Methods Mol Biol ; 2814: 133-147, 2024.
Article in English | MEDLINE | ID: mdl-38954203

ABSTRACT

Activation processes at the plasma membrane have been studied with life-cell imaging using GFP fused to a protein that binds to a component of the activation process. In this way, PIP3 formation has been monitored with CRAC-GFP, Ras-GTP with RBD-Raf-GFP, and Rap-GTP with Ral-GDS-GFP. The fluorescent sensors translocate from the cytoplasm to the plasma membrane upon activation of the process. Although this translocation assay can provide very impressive images and movies, the method is not very sensitive, and amount of GFP-sensor at the plasma membrane is not linear with the amount of activator. The fluorescence in pixels at the cell boundary is partly coming from the GFP-sensor that is bound to the activated membrane and partly from unbound GFP-sensor in the cytosolic volume of that boundary pixel. The variable and unknown amount of cytosol in boundary pixels causes the low sensitivity and nonlinearity of the GFP-translocation assay. Here we describe a method in which the GFP-sensor is co-expressed with cytosolic-RFP. For each boundary pixels, the RFP fluorescence is used to determine the amount of cytosol of that pixel and is subtracted from the GFP fluorescence of that pixel yielding the amount of GFP-sensor that is specifically associated with the plasma membrane in that pixel. This GRminusRD method using GFP-sensor/RFP is at least tenfold more sensitive, more reproducible, and linear with activator compared to GFP-sensor alone.


Subject(s)
Cell Membrane , Green Fluorescent Proteins , Cell Membrane/metabolism , Green Fluorescent Proteins/metabolism , Green Fluorescent Proteins/genetics , Humans , Luminescent Proteins/metabolism , Luminescent Proteins/genetics , Protein Transport , Microscopy, Fluorescence/methods , Cytosol/metabolism , Animals
4.
Cell Metab ; 36(7): 1433-1435, 2024 Jul 02.
Article in English | MEDLINE | ID: mdl-38959859

ABSTRACT

Small peptides have previously been reported to be encoded in mitochondrial rRNA and translated by cytosolic ribosomes. In this issue of Cell Metabolism, Hu et al. use mass spectrometry to identify a cytosolically translated protein, encoded instead in mitochondrial mRNA, that is surprisingly targeted back into the mitochondrial matrix.


Subject(s)
Mitochondria , RNA, Messenger , RNA, Messenger/metabolism , RNA, Messenger/genetics , Mitochondria/metabolism , Mitochondria/genetics , RNA, Mitochondrial/metabolism , RNA, Mitochondrial/genetics , Protein Biosynthesis , Mitochondrial Proteins/metabolism , Mitochondrial Proteins/genetics , Humans , Cytosol/metabolism , Mass Spectrometry
5.
J Pharm Biomed Anal ; 248: 116335, 2024 Sep 15.
Article in English | MEDLINE | ID: mdl-38972226

ABSTRACT

Synthetic cathinones are the second largest group of new psychoactive substances (NPS) monitored by the European Monitoring Centre for Drugs and Drug Addiction. Although 3-methylmethcathinone (3-MMC, C11H15NO) is legally banned in many countries, it is readily available for purchase online and on the street. Due to the scarcity of information regarding the pharmacokinetic and toxicological profile of 3-MMC, understanding its biotransformation pathways is crucial in determining its potential toxicity in humans and in the development of analytical methods for screening of human matrices. To gain more insight, Phase I and Phase II in vitro biotransformation of 3-MMC was investigated using human liver microsomes and human liver cytosol. Suspect and non-target screening approaches were employed to identify metabolites. To confirm in vitro results in an in vivo setting, human matrices (i.e., plasma, urine, saliva and hair) positive for 3-MMC (n=31) were screened. In total three biotransformation products were identified in vitro: C11H15NO2 (a hydroxylated derivate), C11H17NO (a keto-reduced derivate) and C10H13NO (an N-desmethyl derivate). All three were confirmed as human metabolites in respectively 16 %, 52 % and 42 % of the analysed human samples. In total, 61 % of the analysed samples were positive for at least one of the three metabolites. Interestingly, three urine samples were positive for all three metabolites. The presence of 3-MMC in saliva and hair indicates its potential applicability in specific settings, e.g., roadside testing or chronic consumption analysis. To our knowledge, C11H17NO was not detected before in vivo. Although some of these metabolites have been previously suggested in vitro or in a single post mortem case report, a wide in vivo confirmation including the screening of four different human matrices was performed for the first time. These metabolites could serve as potential human biomarkers to monitor human 3-MMC consumption effectively.


Subject(s)
Biotransformation , Cytosol , Hair , Methamphetamine , Microsomes, Liver , Humans , Microsomes, Liver/metabolism , Cytosol/metabolism , Methamphetamine/analogs & derivatives , Methamphetamine/metabolism , Methamphetamine/pharmacokinetics , Hair/chemistry , Hair/metabolism , Saliva/metabolism , Saliva/chemistry , Psychotropic Drugs/metabolism , Psychotropic Drugs/pharmacokinetics , Male , Adult , Tandem Mass Spectrometry/methods
6.
Physiol Plant ; 176(3): e14376, 2024.
Article in English | MEDLINE | ID: mdl-38837784

ABSTRACT

Variations in light intensity induce cytosol pH changes in photosynthetic tissues, providing a possible signal to adjust a variety of biochemical, physiological and developmental processes to the energy status of the cells. It was shown that these pH changes are partially due to the transport of protons in or out of the thylakoid lumen. However, the ion transporters in the chloroplast that transmit these pH changes to the cytosol are not known. KEA1 and KEA2 are K+/H+ antiporters in the chloroplast inner envelope that adjust stromal pH in light-to-dark transitions. We previously determined that stromal pH is higher in kea1kea2 mutant cells. In this study, we now show that KEA1 and KEA2 are required to attenuate cytosol pH variations upon sudden light intensity changes in leaf mesophyll cells, showing they are important components of the light-modulated pH signalling module. The kea1kea2 mutant mesophyll cells also have a considerably less negative membrane potential. Membrane potential is dependent on the activity of the plasma membrane proton ATPase and is regulated by secondary ion transporters, mainly potassium channels in the plasma membrane. We did not find significant differences in the activity of the plasma membrane proton pump but found a strongly increased membrane permeability to protons, especially potassium, of the double mutant plasma membranes. Our results indicate that chloroplast envelope K+/H+ antiporters not only affect chloroplast pH but also have a strong impact on cellular ion homeostasis and energization of the plasma membrane.


Subject(s)
Arabidopsis , Chloroplasts , Cytosol , Potassium-Hydrogen Antiporters , Hydrogen-Ion Concentration , Cytosol/metabolism , Chloroplasts/metabolism , Potassium-Hydrogen Antiporters/metabolism , Potassium-Hydrogen Antiporters/genetics , Arabidopsis/metabolism , Arabidopsis/genetics , Arabidopsis/radiation effects , Arabidopsis Proteins/metabolism , Arabidopsis Proteins/genetics , Light , Membrane Potentials , Potassium/metabolism , Mesophyll Cells/metabolism , Mutation/genetics , Plant Leaves/metabolism , Plant Leaves/genetics , Plant Leaves/radiation effects
7.
Sci Rep ; 14(1): 14900, 2024 06 28.
Article in English | MEDLINE | ID: mdl-38942903

ABSTRACT

Eukaryotic cells can synthesize formyl-methionine (fMet)-containing proteins not only in mitochondria but also in the cytosol to some extent. Our previous study revealed substantial upregulation of N-terminal (Nt)-fMet-containing proteins in the cytosol of SW480 colorectal cancer cells. However, the functional and pathophysiological implications remain unclear. Here, we demonstrated that removal of the Nt-formyl moiety of Nt-fMet-containing proteins (via expressing Escherichia coli PDF peptide deformylase) resulted in a dramatic increase in the proliferation of SW480 colorectal cancer cells. This proliferation coincided with the acquisition of cancer stem cell features, including reduced cell size, enhanced self-renewal capacity, and elevated levels of the cancer stem cell surface marker CD24 and pluripotent transcription factor SOX2. Furthermore, deformylation of Nt-fMet-containing proteins promoted the tumorigenicity of SW480 colorectal cancer cells in an in vivo xenograft mouse model. Taken together, these findings suggest that cytosolic deformylation has a tumor-enhancing effect, highlighting its therapeutic potential for cancer treatment.


Subject(s)
Amidohydrolases , Cell Proliferation , Cytosol , Neoplastic Stem Cells , Humans , Neoplastic Stem Cells/metabolism , Neoplastic Stem Cells/pathology , Animals , Cytosol/metabolism , Mice , Cell Line, Tumor , Amidohydrolases/metabolism , Colorectal Neoplasms/metabolism , Colorectal Neoplasms/pathology , CD24 Antigen/metabolism , SOXB1 Transcription Factors/metabolism , Disease Progression , Methionine/metabolism , Methionine/analogs & derivatives
8.
Sci Rep ; 14(1): 13437, 2024 06 11.
Article in English | MEDLINE | ID: mdl-38862601

ABSTRACT

The primary hurdles for small interference RNA (siRNA) in clinical use are targeted and cytosolic delivery. To overcome both challenges, we have established a novel platform based on phage display, called NNJA. In this approach, a lysosomal cathepsin substrate is engineered within the flexible loops of PIII, that is displaying a unique random sequence at its N-terminus. NNJA library selection targeting cell-expressed targets should yield specific peptides localized in the cytoplasm. That is because phage internalization and subsequent localization to lysosome, upon peptide binding to the cell expressed target, will result in cleavage of PIII, rendering phage non-infective. Such phage will be eliminated from the selected pool and only peptide-phage that escapes lysosomes will advance to the next round. Proof of concept studies with the NNJA library demonstrated cytosolic localization of selected peptide-phage and peptide-siRNA, confirmed through confocal microscopy. More importantly, conjugation of siHPRT to monomeric or multimeric NNJA peptides resulted in significant reduction in HPRT mRNA in various cell types without significant cytotoxicity. Sequence similarity and clustering analysis from NGS dataset provide insights into sequence composition facilitating cell penetration. NNJA platform offers a highly efficient peptide discovery engine for targeted delivery of oligonucleotides to cytosol.


Subject(s)
Cell-Penetrating Peptides , Peptide Library , RNA, Small Interfering , Cell-Penetrating Peptides/metabolism , Cell-Penetrating Peptides/chemistry , Humans , RNA, Small Interfering/genetics , RNA, Small Interfering/metabolism , Lysosomes/metabolism , Cell Surface Display Techniques/methods , Cytosol/metabolism
9.
Molecules ; 29(11)2024 May 27.
Article in English | MEDLINE | ID: mdl-38893395

ABSTRACT

High concentrations of acrolein (2-propenal) are found in polluted air and cigarette smoke, and may also be generated endogenously. Acrolein is also associated with the induction and progression of many diseases. The high reactivity of acrolein towards the thiol and amino groups of amino acids may cause damage to cell proteins. Acrolein may be responsible for the induction of oxidative stress in cells. We hypothesized that acrolein may contribute to the protein damage in erythrocytes, leading to the disruption of the structure of cell membranes. The lipid membrane fluidity, membrane cytoskeleton, and osmotic fragility were measured for erythrocytes incubated with acrolein for 24 h. The levels of thiol, amino, and carbonyl groups were determined in cell membrane and cytosol proteins. The level of non-enzymatic antioxidant potential (NEAC) and TBARS was also measured. The obtained research results showed that the exposure of erythrocytes to acrolein causes changes in the cell membrane and cytosol proteins. Acrolein stiffens the cell membrane of erythrocytes and increases their osmotic sensitivity. Moreover, it has been shown that erythrocytes treated with acrolein significantly reduce the non-enzymatic antioxidant potential of the cytosol compared to the control.


Subject(s)
Acrolein , Cytosol , Erythrocyte Membrane , Erythrocytes , Acrolein/pharmacology , Acrolein/toxicity , Acrolein/metabolism , Cytosol/metabolism , Cytosol/drug effects , Erythrocytes/drug effects , Erythrocytes/metabolism , Humans , Erythrocyte Membrane/drug effects , Erythrocyte Membrane/metabolism , Oxidative Stress/drug effects , Antioxidants/pharmacology , Antioxidants/metabolism , Membrane Proteins/metabolism , Cell Membrane/metabolism , Cell Membrane/drug effects , Membrane Fluidity/drug effects , Osmotic Fragility/drug effects
10.
Proc Natl Acad Sci U S A ; 121(26): e2322927121, 2024 Jun 25.
Article in English | MEDLINE | ID: mdl-38885386

ABSTRACT

RNA interference (RNAi) is more efficient in coleopteran insects than other insects. StaufenC (StauC), a coleopteran-specific double-stranded RNA (dsRNA)-binding protein, is required for efficient RNAi in coleopterans. We investigated the function of StauC in the intracellular transport of dsRNA into the cytosol, where dsRNA is digested by Dicer enzymes and recruited by Argonauts to RNA-induced silencing complexes. Confocal microscopy and cellular organelle fractionation studies have shown that dsRNA is trafficked through the endoplasmic reticulum (ER) in coleopteran Colorado potato beetle (CPB) cells. StauC is localized to the ER in CPB cells, and StauC-knockdown caused the accumulation of dsRNA in the ER and a decrease in the cytosol, suggesting that StauC plays a key role in the intracellular transport of dsRNA through the ER. Using immunoprecipitation, we showed that StauC is required for dsRNA interaction with ER proteins in the ER-associated protein degradation (ERAD) pathway, and these interactions are required for RNAi in CPB cells. These results suggest that StauC works with the ERAD pathway to transport dsRNA through the ER to the cytosol. This information could be used to develop dsRNA delivery methods aimed at improving RNAi.


Subject(s)
Coleoptera , Cytosol , Endoplasmic Reticulum-Associated Degradation , Endoplasmic Reticulum , RNA, Double-Stranded , RNA-Binding Proteins , Animals , Endoplasmic Reticulum/metabolism , RNA, Double-Stranded/metabolism , Cytosol/metabolism , Coleoptera/metabolism , Coleoptera/genetics , Endoplasmic Reticulum-Associated Degradation/physiology , RNA-Binding Proteins/metabolism , RNA-Binding Proteins/genetics , Insect Proteins/metabolism , Insect Proteins/genetics , RNA Interference , Biological Transport
11.
STAR Protoc ; 5(2): 103130, 2024 Jun 21.
Article in English | MEDLINE | ID: mdl-38870018

ABSTRACT

Zinc (Zn2+) plays roles in structure, catalysis, and signaling. The majority of cellular Zn2+ is bound by proteins, but a fraction of total Zn2+ exists in a labile form. Here, we present a protocol for measuring labile cytosolic Zn2+ using an in situ calibration of a genetically encoded Förster resonance energy transfer (FRET) sensor. We describe steps for producing buffered Zn2+ solutions for performing an imaging-based calibration and analyzing the imaging data generated to determine labile Zn2+ concentration in single cells. For complete details on the use and execution of this protocol, please refer to Rakshit and Holtzen et al.1.


Subject(s)
Cytosol , Fluorescence Resonance Energy Transfer , Zinc , Fluorescence Resonance Energy Transfer/methods , Zinc/metabolism , Zinc/analysis , Cytosol/metabolism , Cytosol/chemistry , Calibration , Humans , Biosensing Techniques/methods
12.
J Virol ; 98(7): e0035624, 2024 Jul 23.
Article in English | MEDLINE | ID: mdl-38837380

ABSTRACT

The controlled release of mitochondrial content into the cytosol has emerged as one of the key steps in mitochondrial signaling. In particular, the release of mitochondrial DNA (mtDNA) into the cytosol has been shown to activate interferon beta (IFN-ß) gene expression to execute the innate immune response. In this report, we show that human adenovirus type 5 (HAdV-C5) infection induces the release of mtDNA into the cytosol. The release of mtDNA is mediated by the viral minor capsid protein VI (pVI), which localizes to mitochondria. The presence of the mitochondrial membrane proteins Bak and Bax are needed for the mtDNA release, whereas the viral E1B-19K protein blocked pVI-mediated mtDNA release. Surprisingly, the pVI-mediated mtDNA release did not increase but inhibited the IFN-ß gene expression. Notably, the pVI expression caused mitochondrial leakage of the HSP60 protein. The latter prevented specific phosphorylation of the interferon regulatory factor 3 (IRF3) needed for IFN-ß gene expression. Overall, we assign a new mitochondria and IFN-ß signaling-modulating function to the HAdV-C5 minor capsid protein VI. IMPORTANCE: Human adenoviruses (HAdVs) are common pathogens causing various self-limiting diseases, including conjunctivitis and the common cold. HAdVs need to interfere with multiple cellular signaling pathways during the infection to gain control over the host cell. In this study, we identified human adenovirus type 5 (HAdV-C5) minor capsid protein VI as a factor modulating mitochondrial membrane integrity and mitochondrial signaling. We show that pVI-altered mitochondrial signaling impedes the cell's innate immune response, which may benefit HAdV growth. Overall, our study provides new detailed insights into the HAdV-mitochondria interactions and signaling. This knowledge is helpful when developing new anti-viral treatments against pathogenic HAdV infections and improving HAdV-based therapeutics.


Subject(s)
Adenoviruses, Human , Capsid Proteins , DNA, Mitochondrial , Interferon-beta , Mitochondria , Signal Transduction , Humans , Adenoviruses, Human/physiology , Adenoviruses, Human/genetics , Adenoviruses, Human/metabolism , Capsid Proteins/metabolism , Capsid Proteins/genetics , Mitochondria/metabolism , DNA, Mitochondrial/metabolism , DNA, Mitochondrial/genetics , Interferon-beta/metabolism , Interferon-beta/genetics , Immunity, Innate , Interferon Regulatory Factor-3/metabolism , Interferon Regulatory Factor-3/genetics , Adenovirus Infections, Human/virology , Adenovirus Infections, Human/metabolism , Mitochondrial Membranes/metabolism , HEK293 Cells , Phosphorylation , Cytosol/metabolism , Cytosol/virology
13.
Bioessays ; 46(8): e2400066, 2024 Aug.
Article in English | MEDLINE | ID: mdl-38837436

ABSTRACT

The Three Prime Repair Exonuclease 1 (TREX1) has been implicated in several pathologies characterized by chronic and inborn inflammation. Aberrant innate immunity caused by DNA sensing through the cGAS-STING pathway has been proposed to play a major role in the etiology of these interferonopathies. However, the molecular source of this DNA sensing and the possible involvement of TREX1 in genome (in)stability remains poorly understood. Recent findings reignite the debate about the cellular functions performed by TREX1 nuclease, notably in chromosome biology and stability. Here I put into perspective recent findings that suggest that TREX1 is at the crossroads of DNA damage response and inflammation in different pathological contexts.


Subject(s)
Exodeoxyribonucleases , Genomic Instability , Phosphoproteins , Exodeoxyribonucleases/metabolism , Exodeoxyribonucleases/genetics , Humans , Phosphoproteins/metabolism , Phosphoproteins/genetics , Animals , DNA Damage , Cytosol/metabolism , Immunity, Innate/genetics , Inflammation/genetics , DNA Repair/genetics
14.
Proc Natl Acad Sci U S A ; 121(27): e2403333121, 2024 Jul 02.
Article in English | MEDLINE | ID: mdl-38923985

ABSTRACT

The transient receptor potential melastatin (TRPM) tetrameric cation channels are involved in a wide range of biological functions, from temperature sensing and taste transduction to regulation of cardiac function, inflammatory pain, and insulin secretion. The structurally conserved TRPM cytoplasmic domains make up >70 % of the total protein. To investigate the mechanism by which the TRPM cytoplasmic domains contribute to gating, we employed electrophysiology and cryo-EM to study TRPM5-a channel that primarily relies on activation via intracellular Ca2+. Here, we show that activation of mammalian TRPM5 channels is strongly altered by Ca2+-dependent desensitization. Structures of rat TRPM5 identify a series of conformational transitions triggered by Ca2+ binding, whereby formation and dissolution of cytoplasmic interprotomer interfaces appear to control activation and desensitization of the channel. This study shows the importance of the cytoplasmic assembly in TRPM5 channel function and sets the stage for future investigations of other members of the TRPM family.


Subject(s)
Calcium , Ion Channel Gating , TRPM Cation Channels , TRPM Cation Channels/metabolism , TRPM Cation Channels/chemistry , Animals , Ion Channel Gating/physiology , Rats , Calcium/metabolism , Humans , Cryoelectron Microscopy , HEK293 Cells , Cytosol/metabolism , Protein Domains , Protein Conformation
15.
Neurochem Res ; 49(8): 2228-2248, 2024 Aug.
Article in English | MEDLINE | ID: mdl-38833090

ABSTRACT

Intermittent hypoxia (IH) is the predominant pathophysiological disturbance in obstructive sleep apnea (OSA), characterized by neuronal cell death and neurocognitive impairment. We focus on the accumulated mitochondrial DNA (mtDNA) in the cytosol, which acts as a damage-associated molecular pattern (DAMP) and activates the cyclic GMP-AMP synthase (cGAS)-stimulator of interferon genes (STING) pathway, a known trigger for immune responses and neuronal death in degenerative diseases. However, the specific role and mechanism of the mtDNA-cGAS-STING axis in IH-induced neural damage remain largely unexplored. Here, we investigated the involvement of PANoptosis, a novel type of programmed cell death linked to cytosolic mtDNA accumulation and the cGAS-STING pathway activation, in neuronal cell death induced by IH. Our study found that PANoptosis occurred in primary cultures of hippocampal neurons and HT22 cell lines exposed to IH. In addition, we discovered that during IH, mtDNA released into the cytoplasm via the mitochondrial permeability transition pore (mPTP) activates the cGAS-STING pathway, exacerbating PANoptosis-associated neuronal death. Pharmacologically inhibiting mPTP opening or depleting mtDNA significantly reduced cGAS-STING pathway activation and PANoptosis in HT22 cells under IH. Moreover, our findings indicated that the cGAS-STING pathway primarily promotes PANoptosis by modulating endoplasmic reticulum (ER) stress. Inhibiting or silencing the cGAS-STING pathway substantially reduced ER stress-mediated neuronal death and PANoptosis, while lentivirus-mediated STING overexpression exacerbated these effects. In summary, our study elucidates that cytosolic escape of mtDNA triggers cGAS-STING pathway-dependent neuronal PANoptosis in response to IH, mainly through regulating ER stress. The discovery of the novel mechanism provides theoretical support for the prevention and treatment of neuronal damage and cognitive impairment in patients with OSA.


Subject(s)
Cytosol , DNA, Mitochondrial , Membrane Proteins , Neurons , Nucleotidyltransferases , Signal Transduction , Nucleotidyltransferases/metabolism , Membrane Proteins/metabolism , DNA, Mitochondrial/metabolism , Animals , Neurons/metabolism , Cytosol/metabolism , Signal Transduction/physiology , Mice , Hypoxia/metabolism , Mice, Inbred C57BL , Cell Line , Male , Hippocampus/metabolism
16.
Mar Environ Res ; 199: 106566, 2024 Jul.
Article in English | MEDLINE | ID: mdl-38865871

ABSTRACT

The concentrations of Cd, Cu and Zn have been determined in the tissues and the cytosolic fraction of the common cockle, Cerastoderma edule, collected from sediments in the Tamar, Plym and Avon estuaries (South West, England). Metal concentrations in the tissues of C. edule from the Avon were lower than those from the Tamar and Plym, except for Cu in the digestive gland. Significant statistical relationships were only obtained between the total sedimentary metal concentrations and Cd in the body of C. edule and Cu in the digestive gland. The cytosolic fraction was extracted from each of the tissues and separated for protein analysis thereby allowing determination of the metal contents in high molecular weight (HMW) compounds, metallothionein-like proteins (MTLP) and very low molecular weight (VLMW) compounds. The digestive glands of C. edule from the Avon had relatively low concentrations of MTLP, whereas MTLP concentrations in the digestive gland of cockles from the Tamar and Plym were higher. The cytosolic fraction of C. edule had relatively low total Cd and Cu concentrations associated with MTLP, whereas Zn was preferentially associated with the HMW and the VLMW components. The results are relevant to metal distributions in C. edule and the role of cytosols in the management of metals by C. edule and other invertebrates.


Subject(s)
Cardiidae , Cytosol , Environmental Monitoring , Water Pollutants, Chemical , Animals , Cardiidae/metabolism , Cardiidae/chemistry , Cytosol/metabolism , Water Pollutants, Chemical/metabolism , Water Pollutants, Chemical/analysis , Metals/metabolism , Metals/analysis , Metallothionein/metabolism , England , Metals, Heavy/analysis , Metals, Heavy/metabolism
17.
Int J Mol Sci ; 25(12)2024 Jun 20.
Article in English | MEDLINE | ID: mdl-38928505

ABSTRACT

Nannochloropsis gaditana, a microalga known for its photosynthetic efficiency, serves as a cell factory, producing valuable biomolecules such as proteins, lipids, and pigments. These components make it an ideal candidate for biofuel production and pharmaceutical applications. In this study, we genetically engineered N. gaditana to overexpress the enzyme fructose-1,6-bisphosphatase (cyFBPase) using the Hsp promoter, aiming to enhance sugar metabolism and biomass accumulation. The modified algal strain, termed NgFBP, exhibited a 1.34-fold increase in cyFBPase activity under photoautotrophic conditions. This modification led to a doubling of biomass production and an increase in eicosapentaenoic acid (EPA) content in fatty acids to 20.78-23.08%. Additionally, the genetic alteration activated the pathways related to glycine, protoporphyrin, thioglucosides, pantothenic acid, CoA, and glycerophospholipids. This shift in carbon allocation towards chloroplast development significantly enhanced photosynthesis and growth. The outcomes of this study not only improve our understanding of photosynthesis and carbon allocation in N. gaditana but also suggest new biotechnological methods to optimize biomass yield and compound production in microalgae.


Subject(s)
Biomass , Fructose-Bisphosphatase , Metabolomics , Microalgae , Photosynthesis , Stramenopiles , Fructose-Bisphosphatase/metabolism , Fructose-Bisphosphatase/genetics , Stramenopiles/genetics , Stramenopiles/metabolism , Stramenopiles/growth & development , Stramenopiles/enzymology , Microalgae/metabolism , Microalgae/genetics , Microalgae/growth & development , Microalgae/enzymology , Metabolomics/methods , Cytosol/metabolism
18.
Cell Mol Neurobiol ; 44(1): 51, 2024 Jun 22.
Article in English | MEDLINE | ID: mdl-38907776

ABSTRACT

The circadian system is a conserved time-keeping machinery that regulates a wide range of processes such as sleep/wake, feeding/fasting, and activity/rest cycles to coordinate behavior and physiology. Circadian disruption can be a contributing factor in the development of metabolic diseases, inflammatory disorders, and higher risk of cancer. Glioblastoma (GBM) is a highly aggressive grade 4 brain tumor that is resistant to conventional therapies and has a poor prognosis after diagnosis, with a median survival of only 12-15 months. GBM cells kept in culture were shown to contain a functional circadian oscillator. In seeking more efficient therapies with lower side effects, we evaluated the pharmacological modulation of the circadian clock by targeting the cytosolic kinases glycogen synthase kinase-3 (GSK-3) and casein kinase 1 ε/δ (CK1ε/δ) with specific inhibitors (CHIR99021 and PF670462, respectively), the cryptochrome protein stabilizer (KL001), or circadian disruption after Per2 knockdown expression in GBM-derived cells. CHIR99021-treated cells had a significant effect on cell viability, clock protein expression, migration, and cell cycle distribution. Moreover, cultures exhibited higher levels of reactive oxygen species and alterations in lipid droplet content after GSK-3 inhibition compared to control cells. The combined treatment of CHIR99021 with temozolomide was found to improve the effect on cell viability compared to temozolomide therapy alone. Per2 disruption affected both GBM migration and cell cycle progression. Overall, our results suggest that pharmacological modulation or molecular clock disruption severely affects GBM cell biology.


Subject(s)
Brain Neoplasms , Glioblastoma , Glioblastoma/pathology , Glioblastoma/metabolism , Glioblastoma/drug therapy , Humans , Cell Line, Tumor , Brain Neoplasms/pathology , Brain Neoplasms/metabolism , Brain Neoplasms/drug therapy , Pyridines/pharmacology , Cell Survival/drug effects , Cytosol/metabolism , Cytosol/drug effects , Glycogen Synthase Kinase 3/metabolism , Pyrimidines/pharmacology , Cell Movement/drug effects , Circadian Clocks/drug effects , Circadian Clocks/physiology , CLOCK Proteins/metabolism , CLOCK Proteins/genetics , Period Circadian Proteins/metabolism , Period Circadian Proteins/genetics , Reactive Oxygen Species/metabolism
19.
Open Biol ; 14(6): 240033, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38919062

ABSTRACT

Aspergillus fumigatus is the predominant mould pathogen for humans. Adaption to host-imposed iron limitation has previously been demonstrated to be essential for its virulence. [2Fe-2S] clusters are crucial as cofactors of several metabolic pathways and mediate cytosolic/nuclear iron sensing in fungi including A. fumigatus. [2Fe-2S] cluster trafficking has been shown to involve BolA family proteins in both mitochondria and the cytosol/nucleus. Interestingly, both A. fumigatus homologues, termed Bol1 and Bol3, possess mitochondrial targeting sequences, suggesting the lack of cytosolic/nuclear versions. Here, we show by the combination of mutational, proteomic and fluorescence microscopic analyses that expression of the Bol3 encoding gene leads to dual localization of gene products to mitochondria and the cytosol/nucleus via alternative translation initiation downstream of the mitochondrial targeting sequence, which appears to be highly conserved in various Aspergillus species. Lack of either mitochondrial Bol1 or Bol3 was phenotypically inconspicuous while lack of cytosolic/nuclear Bol3 impaired growth during iron limitation but not iron sensing which indicates a particular importance of [2Fe-2S] cluster trafficking during iron limitation. Remarkably, cytosolic/nuclear Bol3 differs from the mitochondrial version only by N-terminal acetylation, a finding that was only possible by mutational hypothesis testing.


Subject(s)
Aspergillus fumigatus , Cytosol , Fungal Proteins , Iron , Mitochondria , Aspergillus fumigatus/metabolism , Aspergillus fumigatus/genetics , Fungal Proteins/metabolism , Fungal Proteins/genetics , Cytosol/metabolism , Mitochondria/metabolism , Iron/metabolism , Adaptation, Physiological , Cell Nucleus/metabolism , Protein Transport , Proteomics/methods , Iron-Sulfur Proteins/metabolism , Iron-Sulfur Proteins/genetics , Gene Expression Regulation, Fungal , Acetylation
20.
Plant Mol Biol ; 114(4): 72, 2024 Jun 14.
Article in English | MEDLINE | ID: mdl-38874897

ABSTRACT

The red and far-red light photoreceptor phytochrome B (phyB) transmits light signals following cytosol-to-nuclear translocation to regulate transcriptional networks therein. This necessitates changes in protein-protein interactions of phyB in the cytosol, about which little is presently known. Via introduction of a nucleus-excluding G767R mutation into the dominant, constitutively active phyBY276H (YHB) allele, we explore the functional consequences of expressing a cytosol-localized YHBG767R variant in transgenic Arabidopsis seedlings. We show that YHBG767R elicits selective constitutive photomorphogenic phenotypes in dark-grown phyABCDE null mutants, wild type and other phy-deficient genotypes. These responses include light-independent apical hook opening, cotyledon unfolding, seed germination and agravitropic hypocotyl growth with minimal suppression of hypocotyl elongation. Such phenotypes correlate with reduced PIF3 levels, which implicates cytosolic targeting of PIF3 turnover or PIF3 translational inhibition by YHBG767R. However, as expected for a cytoplasm-tethered phyB, YHBG767R elicits reduced light-mediated signaling activity compared with similarly expressed wild-type phyB in phyABCDE mutant backgrounds. YHBG767R also interferes with wild-type phyB light signaling, presumably by formation of cytosol-retained and/or otherwise inactivated heterodimers. Our results suggest that cytosolic interactions with PIFs play an important role in phyB signaling even under physiological conditions.


Subject(s)
Arabidopsis Proteins , Arabidopsis , Cytosol , Phytochrome B , Signal Transduction , Phytochrome B/metabolism , Phytochrome B/genetics , Arabidopsis/genetics , Arabidopsis/metabolism , Arabidopsis/growth & development , Arabidopsis/radiation effects , Cytosol/metabolism , Arabidopsis Proteins/genetics , Arabidopsis Proteins/metabolism , Basic Helix-Loop-Helix Transcription Factors/metabolism , Basic Helix-Loop-Helix Transcription Factors/genetics , Hypocotyl/growth & development , Hypocotyl/genetics , Hypocotyl/metabolism , Hypocotyl/radiation effects , Plants, Genetically Modified , Light , Mutation , Gene Expression Regulation, Plant , Seedlings/genetics , Seedlings/growth & development , Seedlings/radiation effects , Seedlings/metabolism , Phenotype
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