Your browser doesn't support javascript.
loading
Show: 20 | 50 | 100
Results 1 - 20 de 116
Filter
1.
Biomed Pharmacother ; 148: 112785, 2022 Apr.
Article in English | MEDLINE | ID: mdl-35272138

ABSTRACT

Juglone (5 - hydroxy - 1, 4 - naphthalene diketone) is a kind of natural naphthoquinone, present in the roots, leaves, nut-hulls, bark and wood of walnut trees. Recent studies have found that Juglone has special significance in the treatment of cancer, which plays a significant role in the resistance of cancer cell proliferation, induction of cancer cell apoptosis, induction of autophagy, anti-angiogenesis and inhibition of cancer cell migration and invasion, etc. Additionally, its derivatives also play a tumor suppressive effect. In conclusion, Juglone and its derivatives have been identified as effective anticancer drugs. This paper reviews action mechanisms of Juglone and its derivatives in cancer treatment.


Subject(s)
NIMA-Interacting Peptidylprolyl Isomerase/antagonists & inhibitors , Naphthoquinones/pharmacology , Neoplasms/pathology , Antineoplastic Agents/pharmacology , Apoptosis/drug effects , Autophagy/drug effects , Cell Movement/drug effects , Cell Proliferation/drug effects , DNA-Directed DNA Polymerase/drug effects , Humans , Naphthoquinones/chemistry , Neovascularization, Pathologic , Reactive Oxygen Species
2.
Antiviral Res ; 195: 105166, 2021 11.
Article in English | MEDLINE | ID: mdl-34419483

ABSTRACT

Acyclovir (ACV) and penciclovir and their prodrugs are recommended for therapy or prophylaxis of Herpes simplex virus 1 (HSV-1) infections. Their administration, however, can lead to the emergence of resistant strains with altered viral thymidine kinase (TK) function, especially in immunocompromised patients. Furthermore, amino acid (aa) changes of the viral deoxyribonucleic acid polymerase (POL) may contribute to resistance to the aforementioned nucleoside analogues. Given this, treatment with foscarnet (FOS) or cidofovir (CDV) may represent an important alternative. Both drugs directly affect POL activity. Several aa changes of POL, such as L49I, E70K, L359I, E421V, P829S, T1121M, and M1226I, have been observed in ACV-resistant clinical strains which also carried relevant aa changes in their TK. Their contribution to ACV, FOS, and CDV resistance is not fully understood. In this study, these seven aa changes with unknown significance for ACV, FOS and CDV resistance were introduced separately into the POL of a recombinant HSV-1 strain rHSV-1(17+)Lox, equipped with or without information for expression of green fluorescent protein (GFP). The GFP-expressing variants were tested for susceptibility to ACV, FOS and CDV. An rHSV-1(17+)Lox GFP strain with the S724N change conferring resistance to ACV and FOS was generated and included as a control. Only the S724N change was confirmed to induce ACV and FOS resistance, whereas the other changes did not contribute to resistance. The underlying nucleotide substitutions of the POL gene should be therefore considered as natural polymorphism. These data will improve sequence-based prediction of antiviral susceptibility.


Subject(s)
Antiviral Agents/pharmacology , DNA-Directed DNA Polymerase/drug effects , Herpes Simplex/drug therapy , Herpesvirus 1, Human/drug effects , Herpesvirus 1, Human/genetics , Acyclovir/pharmacology , Animals , Chlorocebus aethiops , Cidofovir/pharmacology , Drug Resistance, Viral/drug effects , Foscarnet/pharmacology , Guanine/pharmacology , Humans , Immunocompromised Host , Microbial Sensitivity Tests , Thymidine Kinase/drug effects , Vero Cells
3.
Genes (Basel) ; 12(8)2021 07 27.
Article in English | MEDLINE | ID: mdl-34440316

ABSTRACT

The emergence of precision medicine from the development of Poly (ADP-ribose) polymerase (PARP) inhibitors that preferentially kill cells defective in homologous recombination has sparked wide interest in identifying and characterizing additional DNA repair enzymes that are synthetic lethal with HR factors. DNA polymerase theta (Polθ) is a validated anti-cancer drug target that is synthetic lethal with HR factors and other DNA repair proteins and confers cellular resistance to various genotoxic cancer therapies. Since its initial characterization as a helicase-polymerase fusion protein in 2003, many exciting and unexpected activities of Polθ in microhomology-mediated end-joining (MMEJ) and translesion synthesis (TLS) have been discovered. Here, we provide a short review of Polθ's DNA repair activities and its potential as a drug target and highlight a recent report that reveals Polθ as a naturally occurring reverse transcriptase (RT) in mammalian cells.


Subject(s)
Antineoplastic Agents/pharmacology , DNA-Directed DNA Polymerase/drug effects , RNA-Directed DNA Polymerase/metabolism , Animals , DNA-Directed DNA Polymerase/metabolism , Drug Delivery Systems , Humans , DNA Polymerase theta
4.
Nat Commun ; 12(1): 3040, 2021 05 24.
Article in English | MEDLINE | ID: mdl-34031403

ABSTRACT

All herpesviruses encode a conserved DNA polymerase that is required for viral genome replication and serves as an important therapeutic target. Currently available herpesvirus therapies include nucleoside and non-nucleoside inhibitors (NNI) that target the DNA-bound state of herpesvirus polymerase and block replication. Here we report the ternary complex crystal structure of Herpes Simplex Virus 1 DNA polymerase bound to DNA and a 4-oxo-dihydroquinoline NNI, PNU-183792 (PNU), at 3.5 Å resolution. PNU bound at the polymerase active site, displacing the template strand and inducing a conformational shift of the fingers domain into an open state. These results demonstrate that PNU inhibits replication by blocking association of dNTP and stalling the enzyme in a catalytically incompetent conformation, ultimately acting as a nucleotide competing inhibitor (NCI). Sequence conservation of the NCI binding pocket further explains broad-spectrum activity while a direct interaction between PNU and residue V823 rationalizes why mutations at this position result in loss of inhibition.


Subject(s)
DNA-Directed DNA Polymerase/chemistry , DNA-Directed DNA Polymerase/drug effects , DNA-Directed DNA Polymerase/genetics , Herpesviridae/drug effects , Herpesviridae/enzymology , Antiviral Agents/pharmacology , Binding Sites , DNA-Directed DNA Polymerase/metabolism , Drug Resistance, Viral/drug effects , Exodeoxyribonucleases , Nucleotides , Quinolines/pharmacology , Viral Proteins , Virus Replication
5.
J Biol Chem ; 296: 100260, 2021.
Article in English | MEDLINE | ID: mdl-33814344

ABSTRACT

The concept of liquid-liquid phase separation (LLPS) has emerged as an intriguing mechanism for the organization of membraneless compartments in cells. The alcohol 1,6-hexanediol is widely used as a control to dissolve LLPS assemblies in phase separation studies in diverse fields. However, little is known about potential side effects of 1,6-hexanediol, which could compromise data interpretation and mislead the scientific debate. To examine this issue, we analyzed the effect of 1,6-hexanediol on the activities of various enzymes in vitro. Already at 1% volume concentration, 1,6-hexanediol strongly impaired kinases and phosphatases and partly blocked DNA polymerases, while it had no effect on DNase activity. At concentrations that are usually used to dissolve LLPS droplets (5-10%), both kinases and phosphatases were virtually inactive. Given the widespread function of protein phosphorylation in cells, our data argue for a careful review of 1,6-hexanediol in phase separation studies.


Subject(s)
Glycols/pharmacology , Organelles/chemistry , Phosphoric Monoester Hydrolases/antagonists & inhibitors , Phosphotransferases/antagonists & inhibitors , DNA-Directed DNA Polymerase/chemistry , DNA-Directed DNA Polymerase/drug effects , Glycols/chemistry , Organelles/genetics , Phosphoric Monoester Hydrolases/chemistry , Phosphorylation/drug effects , Phosphotransferases/chemistry , Protein Domains/genetics
6.
Nat Commun ; 12(1): 2455, 2021 04 28.
Article in English | MEDLINE | ID: mdl-33911081

ABSTRACT

The mutational mechanisms underlying recurrent deletions in clonal hematopoiesis are not entirely clear. In the current study we inspect the genomic regions around recurrent deletions in myeloid malignancies, and identify microhomology-based signatures in CALR, ASXL1 and SRSF2 loci. We demonstrate that these deletions are the result of double stand break repair by a PARP1 dependent microhomology-mediated end joining (MMEJ) pathway. Importantly, we provide evidence that these recurrent deletions originate in pre-leukemic stem cells. While DNA polymerase theta (POLQ) is considered a key component in MMEJ repair, we provide evidence that pre-leukemic MMEJ (preL-MMEJ) deletions can be generated in POLQ knockout cells. In contrast, aphidicolin (an inhibitor of replicative polymerases and replication) treatment resulted in a significant reduction in preL-MMEJ. Altogether, our data indicate an association between POLQ independent MMEJ and clonal hematopoiesis and elucidate mutational mechanisms involved in the very first steps of leukemia evolution.


Subject(s)
Clonal Hematopoiesis/genetics , DNA End-Joining Repair/genetics , DNA-Directed DNA Polymerase/genetics , Leukemia, Myeloid/genetics , Poly (ADP-Ribose) Polymerase-1/metabolism , Aphidicolin/pharmacology , Calreticulin/genetics , DNA Breaks, Double-Stranded , DNA-Directed DNA Polymerase/drug effects , Enzyme Inhibitors/pharmacology , Humans , Myeloid Progenitor Cells , Repressor Proteins/genetics , Sequence Deletion/genetics , Serine-Arginine Splicing Factors/genetics , DNA Polymerase theta
7.
Int J Mol Sci ; 21(21)2020 Nov 04.
Article in English | MEDLINE | ID: mdl-33158019

ABSTRACT

Polymerase eta (Polη) is a translesion synthesis DNA polymerase directly linked to cancer development. It can bypass several DNA lesions thereby rescuing DNA damage-stalled replication complexes. We previously presented evidence implicating Saccharomyces cerevisiae Polη in transcription elongation, and identified its specific RNA extension and translesion RNA synthetic activities. However, RNA synthesis by Polη proved rather inefficient under conditions optimal for DNA synthesis. Searching for factors that could enhance its RNA synthetic activity, we have identified the divalent cation of manganese. Here, we show that manganese triggers drastic changes in the activity of Polη. Kinetics experiments indicate that manganese increases the efficiency of ribonucleoside incorporation into RNA by ~400-2000-fold opposite undamaged DNA, and ~3000 and ~6000-fold opposite TT dimer and 8oxoG, respectively. Importantly, preference for the correct base is maintained with manganese during RNA synthesis. In contrast, activity is strongly impaired, and base discrimination is almost lost during DNA synthesis by Polη with manganese. Moreover, Polη shows strong preference for manganese during RNA synthesis even at a 25-fold excess magnesium concentration. Based on this, we suggest that a new regulatory mechanism, selective metal cofactor utilization, modulates the specificity of Polη helping it to perform distinct activities needed for its separate functions during replication and transcription.


Subject(s)
DNA-Directed DNA Polymerase/drug effects , DNA-Directed DNA Polymerase/metabolism , Metals/pharmacology , RNA/metabolism , Saccharomyces cerevisiae/enzymology , Catalysis/drug effects , DNA/metabolism , DNA Repair/drug effects , DNA Replication/drug effects , DNA-Directed RNA Polymerases/drug effects , DNA-Directed RNA Polymerases/metabolism , Enzyme Activation/drug effects , Heavy Ions , Kinetics , Metals/chemistry , Polymerization/drug effects , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/metabolism , Substrate Specificity/drug effects
8.
Article in English | MEDLINE | ID: mdl-32015044

ABSTRACT

Herein, we phenotypically and enzymatically characterize the theoretical mutation Q579I in helix K and the already described clinical mutation K805Q in helix P of cytomegalovirus DNA polymerase for susceptibility to foscarnet. Q579I and K805Q recombinant viruses were hypersusceptible to foscarnet (respective mean 50% effective concentrations [EC50] of 0.12- and 0.19-fold that of the wild type). Three-dimensional modeling analysis suggested that both mutations favor the closed conformation of the enzyme to which foscarnet binds with a higher affinity.


Subject(s)
Antiviral Agents/pharmacology , Cytomegalovirus/drug effects , Cytomegalovirus/genetics , DNA-Directed DNA Polymerase/genetics , Foscarnet/pharmacology , Cytomegalovirus Infections/drug therapy , DNA, Viral/genetics , DNA-Directed DNA Polymerase/drug effects , Drug Resistance, Viral/genetics , Humans , Models, Molecular , Mutation
9.
ACS Chem Biol ; 14(6): 1337-1351, 2019 06 21.
Article in English | MEDLINE | ID: mdl-31082191

ABSTRACT

Overexpression of human DNA polymerase kappa (hpol κ) in glioblastoma is associated with shorter survival time and resistance to the alkylating agent temozolomide (TMZ), making it an attractive target for the development of small-molecule inhibitors. We previously reported on the development and characterization of indole barbituric acid-derived (IBA) inhibitors of translesion DNA synthesis polymerases (TLS pols). We have now identified a potent and selective inhibitor of hpol κ based on the indole-aminoguanidine (IAG) chemical scaffold. The most promising IAG analogue, IAG-10, exhibited greater inhibitory action against hpol κ than any other human Y-family member, as well as pols from the A-, B-, and X-families. Inhibition of hpol κ by IAG analogues appears to proceed through a mechanism that is distinct from inhibition of hpol η based on changes in DNA binding affinity and nucleotide insertion kinetics. By way of comparison, both IAG and IBA analogues inhibited binary complex formation by hpol κ and ternary complex formation by hpol η. Decreasing the concentration of enzyme and DNA in the reaction mixture lowered the IC50 value of IAG-10 to submicromolar values, consistent with inhibition of binary complex formation for hpol κ. Chemical footprinting experiments revealed that IAG-10 binds to a cleft between the finger, little finger, and N-clasp domains on hpol κ and that this likely disrupts the interaction between the N-clasp and the TLS pol core. In cell culture, IAG-10 potentiated the antiproliferative activity and DNA damaging effects of TMZ in hpol κ-proficient cells but not in hpol κ-deficient cells, indicative of a target-dependent effect. Mutagenic replication across alkylation damage increased in hpol κ-proficient cells treated with IAG-10, while no change in mutation frequency was observed for hpol κ-deficient cells. In summary, we developed a potent and selective small-molecule inhibitor of hpol κ that takes advantage of structural features unique to this TLS enzyme to potentiate TMZ, a standard-of-care drug used in the treatment of malignant brain tumors. Furthermore, the IAG scaffold represents a new chemical space for the exploration of TLS pol inhibitors, which could prove useful as a strategy for improving patient response to genotoxic drugs.


Subject(s)
DNA-Directed DNA Polymerase/drug effects , Enzyme Inhibitors/pharmacology , Indoles/pharmacology , Alkylation , DNA Damage , Humans , Inhibitory Concentration 50
10.
Forensic Sci Int Genet ; 40: 182-191, 2019 05.
Article in English | MEDLINE | ID: mdl-30878722

ABSTRACT

Massively parallel sequencing holds great promise for new possibilities in the field of forensic genetics, enabling simultaneous analysis of multiple markers as well as offering enhanced short tandem repeat allele resolution. A challenge in forensic DNA analysis is that the samples often contain low amounts of DNA in a background that may interfere with downstream analysis. PCR inhibition mechanisms of some relevant molecules have been studied applying e.g. real-time PCR and digital PCR. However, a detailed understanding of the effects of inhibitory molecules on forensic MPS, including mechanisms and ways to relieve inhibition, is missing. In this study, the effects of two well-characterized PCR inhibitors, humic acid and hematin, have been studied using the ForenSeq DNA Signature Prep kit. Humic acid and hematin resulted in lowered read numbers as well as specific negative effects on certain markers. Quality control of libraries with Fragment analyzer showed that increasing amounts of inhibitors caused a lowered amplicon quantity and that the larger amplicons were more likely to drop out. Further, the inhibitor tolerance could be improved 5-10 times by addition of bovine serum albumin in the initial PCR. On the contrary to the samples with inhibitors, low-template samples resulted in lowered read numbers for all markers. This difference strengthened the conclusion that the inhibitors have a negative effect on the DNA polymerase activity in the initial PCR. Additionally, a common capillary gel electrophoresis-based STR kit was shown to handle at least 200 times more inhibitors than the ForenSeq DNA Signature Prep kit. This suggests that there is room for improvement of the PCR components to ensure analytical success for challenging samples, which is needed for a broad application of MPS for forensic STR analysis.


Subject(s)
DNA Fingerprinting , Hemin , High-Throughput Nucleotide Sequencing , Humic Substances , Polymerase Chain Reaction , DNA Fingerprinting/instrumentation , DNA-Directed DNA Polymerase/drug effects , Electrophoresis, Capillary , Heterozygote , Humans , Microsatellite Repeats
11.
Antiviral Res ; 158: 255-263, 2018 10.
Article in English | MEDLINE | ID: mdl-30153445

ABSTRACT

Human cytomegalovirus (HCMV) can cause severe disease in patients with compromised or immature immune systems. Currently approved pharmacotherapies for the treatment of systemic HCMV infections [ganciclovir (GCV), cidofovir (CDV), foscarnet] are limited by a high incidence of adverse effects and/or the development of drug resistance. Given that many of these drugs have the same viral target (HCMV-encoded DNA polymerase), cross-resistance is relatively common. The primary means to combat drug resistance is combination pharmacotherapy using therapeutics with different molecular mechanisms of action with the expectation that those combinations result in an additive or synergistic enhancement of effect; combinations that result in antagonism can, in many cases, be detrimental to the outcome of the patient. We therefore tested select combinations of approved (GCV, CDV, letermovir (LMV)) and experimental (brincidofovir (BCV), cyclopropavir (CPV), maribavir (MBV), BDCRB) drugs with the hypothesis that combinations of drugs with different and distinct molecular mechanisms of action will produce an additive and/or synergistic enhancement of antiviral effect against HCMV in vitro. Using MacSynergy II (a statistical package that measures enhancement or lessening of effect relative to zero/additive), select drug combination studies demonstrated combination indices ranging from 160 to 372 with 95% confidence intervals greater than zero indicating that these combinations elicit a synergistic enhancement of effect against HCMV in vitro. These data suggest that administration of a viral DNA polymerase inhibitor, MBV, and/or a viral terminase inhibitor in combination has the potential to address the resistance/cross-resistance problems associated with currently available therapeutics.


Subject(s)
Antiviral Agents/administration & dosage , Antiviral Agents/pharmacology , Antiviral Agents/therapeutic use , Cytomegalovirus Infections/drug therapy , Cytomegalovirus/drug effects , Benzimidazoles/pharmacology , Cell Line , Cidofovir/pharmacology , Cyclopropanes/pharmacology , Cytosine/analogs & derivatives , Cytosine/pharmacology , DNA-Directed DNA Polymerase/drug effects , Drug Antagonism , Drug Combinations , Drug Resistance, Viral/drug effects , Drug Resistance, Viral/genetics , Drug Synergism , Drug Therapy, Combination , Endodeoxyribonucleases/antagonists & inhibitors , Fibroblasts , Foscarnet/pharmacology , Ganciclovir/pharmacology , Guanine/analogs & derivatives , Guanine/pharmacology , Humans , Nucleic Acid Synthesis Inhibitors/pharmacology , Organophosphonates/pharmacology , Ribonucleosides/pharmacology , Viral Proteins/antagonists & inhibitors , Virus Replication/drug effects
12.
PLoS Pathog ; 14(5): e1007070, 2018 05.
Article in English | MEDLINE | ID: mdl-29813138

ABSTRACT

Late gene transcription in herpesviruses is dependent on viral DNA replication in cis but the mechanistic basis for this linkage remains unknown. DNA replication results in demethylated DNA, topological changes, removal of proteins and recruitment of proteins to promoters. One or more of these effects of DNA replication may facilitate late gene transcription. Using 5-azacytidine to promote demethylation of DNA, we demonstrate that late gene transcription cannot be rescued by DNA demethylation. Late gene transcription precedes significant increases in DNA copy number, indicating that increased template numbers also do not contribute to the linkage between replication and late gene transcription. By using serial, timed blockade of DNA replication and measurement of late gene mRNA accumulation, we demonstrate that late gene transcription requires ongoing DNA replication. Consistent with these findings, blocking DNA replication led to dissolution of DNA replication complexes which also contain RNA polymerase II and BGLF4, an EBV protein required for transcription of several late genes. These data indicate that ongoing DNA replication maintains integrity of a replication-transcription complex which is required for recruitment and retention of factors necessary for late gene transcription.


Subject(s)
DNA Replication/physiology , Gammaherpesvirinae/genetics , Transcription, Genetic/physiology , Virus Replication/physiology , Azacitidine/pharmacology , DNA Demethylation , DNA-Directed DNA Polymerase/drug effects , Enzyme Inhibitors/pharmacology , Gammaherpesvirinae/physiology , Gene Expression Regulation, Viral/drug effects , Genes, Immediate-Early , Kinetics , Nucleic Acid Synthesis Inhibitors/pharmacology , Phosphonoacetic Acid/pharmacology , Promoter Regions, Genetic/genetics
13.
PLoS One ; 13(1): e0190041, 2018.
Article in English | MEDLINE | ID: mdl-29293599

ABSTRACT

The full potential of the real-time reverse transcription polymerase chain reaction (RT-PCR) as a rapid and accurate diagnostic method is limited by DNA polymerase inhibitors as well as reverse transcriptase inhibitors which are ubiquitous in clinical samples. rTth polymerase has proven to be more resistant to DNA polymerase inhibitors present in clinical samples for DNA detection and also exhibits reverse transcriptase activity in the presence of Mn2+ ions. However, the capacity of rTth polymerase, which acts as DNA polymerase and reverse transcriptase, to detect RNA in the presence of various inhibitors has not been investigated in detail. Herein, the inhibitors originating from various clinical samples such as blood, urine, feces, bodily fluids, tissues and reagents used during nucleic acid extraction were employed to evaluate the capacity of rTth polymerase to detect RNA. The results show that the inhibitors have different inhibitory effects on the real-time RT-PCR reactions by rTth polymerase, and the inhibitory effects are concentration dependent. Additionally, the capacity of rTth polymerase to detect RNA in the presence of various inhibitors is better or at least comparable with its capacity to detect DNA in the presence of various inhibitors. As a consequence, RNA may be directly detected in the presence of co-purified inhibitors or even directly from crude clinical samples by rTth polymerase.


Subject(s)
DNA-Directed DNA Polymerase/metabolism , Enzyme Inhibitors/pharmacology , RNA/analysis , DNA-Directed DNA Polymerase/drug effects , RNA/genetics , Real-Time Polymerase Chain Reaction , Reverse Transcriptase Polymerase Chain Reaction
14.
Eur J Med Chem ; 130: 248-260, 2017 Apr 21.
Article in English | MEDLINE | ID: mdl-28254698

ABSTRACT

Using an HIV-1 Reverse Transcriptase (RT)-associated RNase H inhibition assay as lead, bioguided fractionation of the dichloromethane extract of the Ocimum sanctum leaves led to the isolation of five triterpenes (1-5) along with three 3-methoxy-4-hydroxy phenyl derivatives (6-8). The structure of this isolates were determined by 1D and 2D NMR experiments as well as ESI-MS. Tetradecyl ferulate (8) showed an interesting RNase H IC50 value of 12.4 µM and due to the synthetic accessibility of this secondary metabolite, a structure-activity relationship study was carried out. A series of esters and amides of ferulic and caffeic acids were synthesized and, among all, the most active was N-oleylcaffeamide displaying a strong inhibitory activity towards both RT-associated functions, ribonuclease H and DNA polymerase. Molecular modeling studies together with Yonetani-Theorell analysis, demonstrated that N-oleylcaffeamide is able to bind both two allosteric site located one close to the NNRTI binding pocket and the other close to RNase H catalytic site.


Subject(s)
Anti-HIV Agents/chemistry , Caffeic Acids/pharmacology , Coumaric Acids/pharmacology , HIV Reverse Transcriptase/antagonists & inhibitors , Amides/pharmacology , Anti-HIV Agents/pharmacology , Binding Sites , Coumaric Acids/chemistry , DNA-Directed DNA Polymerase/drug effects , Esters/pharmacology , Plant Extracts/chemistry , Ribonuclease H, Human Immunodeficiency Virus/antagonists & inhibitors , Structure-Activity Relationship , Triterpenes
15.
Biomed Chromatogr ; 31(6)2017 Jun.
Article in English | MEDLINE | ID: mdl-27859484

ABSTRACT

Investigation of novel plant-based agents might provide alternative antibiotics and thus fight antibiotic resistance. Here, we measured the ability of fruit and leaf extracts of Sorbus aucuparia (Sauc) and endemic Sorbus caucasica var. yaltirikii (Scau) to inhibit nonreplicative (Klenow Fragment-KF and Bacillus Large Fragment-BLF) and replicative (DnaE and PolC) bacterial DNA polymerases along with their antimicrobial, DPPH free radical scavenging activity (RSA), and chemical contents by total phenolic content and HPLC-DAD analysis. We found that leaf extracts had nearly 10-fold higher RSA and 5-fold greater TPC than the corresponding fruit extracts. All extracts had large amounts of chlorogenic acid (CGA) and rutin, while fruit extracts had large amounts of quercetin. Hydrolysis of fruit extracts revealed mainly caffeic acid from CGA (caffeoylquinic acid) and quercetin from rutin (quercetin-3-O-rutinoside), as well as CGA and derivatives of CGA and p-coumaric acid. Plant extracts of Sorbus species showed antimicrobial activity against Gram-negative microorganisms. Scau leaf extracts exhibited strong inhibition of KF activity. Sauc and Scau leaf extracts also strongly inhibited two replicative DNA polymerases. Thus, these species can be considered a potential source of novel antimicrobial agents specific for Gram-negative bacteria.


Subject(s)
Anti-Bacterial Agents/pharmacology , DNA-Directed DNA Polymerase/drug effects , Gram-Negative Bacteria/drug effects , Plant Extracts/pharmacology , Rosaceae/chemistry , Chromatography, High Pressure Liquid , Gram-Negative Bacteria/enzymology
16.
Methods Mol Biol ; 1119: 349-63, 2014.
Article in English | MEDLINE | ID: mdl-24639231

ABSTRACT

Human cytomegalovirus (HCMV) infection is responsible for severe, often even fatal, diseases in immunocompromised subjects and also represents the major cause of viral-associated congenital malformations in newborn children. The few drugs licensed for anti-HCMV therapy suffer from many drawbacks and none of them have been approved for the treatment of congenital infections. Furthermore, the emergence of drug-resistant viral strains represents a major concern for disease management. Thus, there is a strong need for new anti-HCMV drugs. Here we describe three different assays for the discovery of novel anti-HCMV compounds: two are in vitro assays, i.e., a fluorescence polarization (FP)-based assay and an enzyme-linked immunosorbent assay (ELISA), which are designed to search for compounds that act by disrupting the interactions between the HCMV DNA polymerase subunits, but in general can be employed to find inhibitors of any protein-protein interaction of interest; the third is a cell-based assay designed to identify inhibitors of the viral immediate-early 2 (IE2) protein activities.


Subject(s)
Antiviral Agents/administration & dosage , Cytomegalovirus Infections/drug therapy , Immediate-Early Proteins/antagonists & inhibitors , Molecular Biology/methods , Trans-Activators/antagonists & inhibitors , Antiviral Agents/chemistry , Antiviral Agents/pharmacology , Cytomegalovirus/drug effects , Cytomegalovirus/immunology , Cytomegalovirus/pathogenicity , Cytomegalovirus Infections/immunology , Cytomegalovirus Infections/virology , DNA-Directed DNA Polymerase/drug effects , DNA-Directed DNA Polymerase/genetics , Humans , Immediate-Early Proteins/genetics , Infant, Newborn , Protein Interaction Maps/drug effects , Trans-Activators/genetics , Virus Replication/drug effects
17.
PLoS One ; 8(7): e68347, 2013.
Article in English | MEDLINE | ID: mdl-23874596

ABSTRACT

T-705 (Favipiravir) is a broad-spectrum antiviral molecule currently in late stage clinical development for the treatment of influenza virus infection. Although it is believed that T-705 potency is mediated by its ribofuranosyl triphosphate (T-705 RTP) metabolite that could be mutagenic, the exact molecular interaction with the polymerase of influenza A virus (IAVpol) has not been elucidated. Here, we developed a biochemical assay to measure the kinetics of nucleotide incorporation by IAVpol in the elongation mode. In this assay, T-705 RTP was recognized by IAVpol as an efficient substrate for incorporation to the RNA both as a guanosine and an adenosine analog. Compared to natural GTP and ATP, the discrimination of T-705 RTP was about 19- and 30-fold, respectively. Although the single incorporation of the ribonucleotide monophosphate form of T-705 did not efficiently block RNA synthesis, two consecutive incorporation events prevented further primer extension. In comparison, 3'-deoxy GTP caused immediate chain termination but was incorporated less efficiently by the enzyme, with a discrimination of 4,900-fold relative to natural GTP. Collectively, these results provide the first detailed biochemical characterization to evaluate the substrate efficiency and the inhibition potency of nucleotide analogs against influenza virus polymerase. The combination of ambiguous base-pairing with low discrimination of T-705 RTP provides a mechanistic basis for the in vitro mutagenic effect of T-705 towards influenza virus.


Subject(s)
Amides/pharmacology , Antiviral Agents/pharmacology , Base Pair Mismatch , Base Pairing/drug effects , DNA-Directed DNA Polymerase/metabolism , Influenza A virus/enzymology , Pyrazines/pharmacology , Amides/metabolism , Animals , Antimetabolites/metabolism , Antimetabolites/pharmacology , Antiviral Agents/metabolism , Base Pair Mismatch/drug effects , Base Pair Mismatch/physiology , DNA-Directed DNA Polymerase/drug effects , Humans , Polyphosphates/metabolism , Polyphosphates/pharmacology , Pyrazines/metabolism , Ribavirin/analogs & derivatives , Ribavirin/pharmacology , Sf9 Cells , Spodoptera , Substrate Specificity
18.
Mol Cell Biochem ; 366(1-2): 239-49, 2012 Jul.
Article in English | MEDLINE | ID: mdl-22451019

ABSTRACT

The G protein-coupled oestrogen receptor GPER1, also known as GPR30, has been implicated in oestrogen signalling, but the physiological importance of GPER1 is not fully understood. The GPER1 agonist G-1 has become an important tool to assess GPER1-mediated cellular effects. Here, we report that this substance, besides acting via GPER1, affects the microtubule network in endothelial cells. Treatment with G-1 (3 µM) for 24 h reduced DNA synthesis by about 60 % in mouse microvascular endothelial bEnd.3 cells. Treatment with 3 µM G-1 prevented outgrowth of primary endothelial cells from mouse aortic explants embedded in Matrigel. Treatment with G-1 (0.3-3 µM) for 24 h disrupted bEnd.3 cell and HUVEC microtubule structure in a concentration-dependent manner as assessed by laser-scanning confocal immunofluorescence microscopy. G-1-induced (3 µM) disruption of microtubule was observed also after acute (3 and 6 h) treatment and in the presence of the protein synthesis inhibitor cycloheximide. Disruption of microtubules by 3 µM G-1 was observed in aortic smooth muscle cells obtained from both GPER1 knockout and wild-type mice, suggesting that G-1 influences microtubules through a mechanism independent of GPER1. G-1 dose dependently (10-50 µM) stimulated microtubule assembly in vitro. On the other hand, microtubules appeared normal in the presence of 10-50 µM G-1 as determined by electron microscopy. We suggest that G-1-promoted endothelial cell anti-proliferation is due in part to alteration of microtubule organization through a mechanism independent of GPER1. This G-1-promoted mechanism may be used to block unwanted endothelial cell proliferation and angiogenesis such as that observed in, e.g. cancer.


Subject(s)
Cyclopentanes/pharmacology , Endothelial Cells/metabolism , Microtubules/drug effects , Quinolines/pharmacology , Receptors, Estrogen/agonists , Receptors, G-Protein-Coupled/agonists , Tubulin Modulators/pharmacology , Animals , Aorta/cytology , Aorta/drug effects , Cell Proliferation , Cells, Cultured , DNA-Directed DNA Polymerase/drug effects , Endothelial Cells/drug effects , Endothelial Cells/physiology , Endothelial Cells/ultrastructure , Female , Gene Expression/drug effects , Humans , Kinetics , Mice , Mice, Inbred C57BL , Mice, Knockout , Microtubules/metabolism , Myocytes, Smooth Muscle/drug effects , Myocytes, Smooth Muscle/metabolism , Myocytes, Smooth Muscle/ultrastructure , Protein Multimerization/drug effects , Receptors, Estrogen/genetics , Receptors, Estrogen/metabolism , Receptors, G-Protein-Coupled/genetics , Receptors, G-Protein-Coupled/metabolism , Tissue Culture Techniques , Vascular Endothelial Growth Factor A/genetics , Vascular Endothelial Growth Factor A/metabolism , Vascular Endothelial Growth Factor Receptor-1/genetics , Vascular Endothelial Growth Factor Receptor-1/metabolism , Vascular Endothelial Growth Factor Receptor-2/genetics , Vascular Endothelial Growth Factor Receptor-2/metabolism
19.
IET Nanobiotechnol ; 5(1): 20-4, 2011 Mar.
Article in English | MEDLINE | ID: mdl-21241158

ABSTRACT

The interaction of gold nanoparticles with Pfu DNA polymerase has been investigated by a number of biological, optical and electronic spectroscopic techniques. Polymerase chain reaction was performed to show gold nanoparticles' biological effect. Ultraviolet-visible and circular dichroism spectra analysis were applied to character the structure of Pfu DNA polymerase after conjugation with gold nanoparticles. X-ray photoelectron spectroscopy was used to investigate the bond properties of the polymerase-gold nanoparticles complex. The authors demonstrate that gold nanoparticles do not affect the amplification efficiency of polymerase chain reaction using Pfu DNA polymerase, and Pfu DNA polymerase displays no significant changes of the secondary structure upon interaction with gold nanoparticles. The adsorption of Pfu DNA polymerase to gold nanoparticles is mainly through Au-NH(2) bond and electrostatic interaction. These findings may have important implications regarding the safety issue as gold nanoparticles are widely used in biomedical applications.


Subject(s)
DNA-Directed DNA Polymerase/chemistry , Gold/chemistry , Metal Nanoparticles/chemistry , Polymerase Chain Reaction/methods , Adsorption , Chlorides/chemistry , DNA-Directed DNA Polymerase/drug effects , Gold/pharmacology , Gold Compounds/chemistry , Models, Molecular , Spectrophotometry
20.
Proc Natl Acad Sci U S A ; 107(2): 882-7, 2010 Jan 12.
Article in English | MEDLINE | ID: mdl-20080770

ABSTRACT

The neuraminidase inhibitors oseltamivir and zanamivi are used to treat H5N1 influenza. However, oseltamivir-resistant H5N1 viruses have been isolated from oseltamivir-treated patients. Moreover, reassortment between H5N1 viruses and oseltamvir-resistant human H1N1 viruses currently circulating could create oseltamivir-resistant H5N1 viruses, rendering the oseltamivir stockpile obsolete. Therefore, there is a need for unique and effective antivirals to combat H5N1 influenza viruses. The investigational drug T-705 (favipiravir; 6-fluoro-3-hydroxy-2-pyrazinecarboxamide) has antiviral activity against seasonal influenza viruses and a mouse-adapted H5N1 influenza virus derived from a benign duck virus. However, its efficacy against highly pathogenic H5N1 viruses, which are substantially more virulent, remains unclear. Here, we demonstrate that T-705 effectively protects mice from lethal infection with oseltamivir-sensitive or -resistant highly pathogenic H5N1 viruses. Furthermore, our biochemical analysis suggests that T-705 ribofuranosyl triphosphate, an active form of T-705, acts like purines or purine nucleosides in human cells and does not inhibit human DNA synthesis. We conclude that T-705 shows promise as a therapeutic agent for the treatment of highly pathogenic H5N1 influenza patients.


Subject(s)
Amides/pharmacology , Antiviral Agents/pharmacology , Influenza A Virus, H5N1 Subtype/drug effects , Influenza, Human/drug therapy , Pyrazines/pharmacology , Aged , Animals , Cell Line , Child , DNA Replication/drug effects , DNA-Directed DNA Polymerase/drug effects , DNA-Directed DNA Polymerase/metabolism , Dogs , Drug Resistance, Viral , Humans , Influenza, Human/mortality , Kidney , Kinetics , Lung/drug effects , Oseltamivir/pharmacology , Ribavirin/pharmacology
SELECTION OF CITATIONS
SEARCH DETAIL
...