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1.
PLoS One ; 11(11): e0165056, 2016.
Article in English | MEDLINE | ID: mdl-27829037

ABSTRACT

Army ant colonies host a diverse community of arthropod symbionts. Among the best-studied symbiont communities are those of Neotropical army ants of the genus Eciton. It is clear, however, that even in these comparatively well studied systems, a large proportion of symbiont biodiversity remains unknown. Even more striking is our lack of knowledge regarding the nature and specificity of these host-symbiont interactions. Here we surveyed the diversity and host specificity of rove beetles of the genus Tetradonia Wasmann, 1894 (Staphylinidae: Aleocharinae). Systematic community sampling of 58 colonies of the six local Eciton species at La Selva Biological Station, Costa Rica, combined with an integrative taxonomic approach, allowed us to uncover species diversity, host specificity, and co-occurrence patterns of symbionts in unprecedented detail. We used an integrative taxonomic approach combining morphological and genetic analyses, to delineate species boundaries. Mitochondrial DNA barcodes were analyzed for 362 Tetradonia specimens, and additional nuclear markers for a subset of 88 specimens. All analyses supported the presence of five Tetradonia species, including two species new to science. Host specificity is highly variable across species, ranging from generalists such as T. laticeps, which parasitizes all six local Eciton species, to specialists such as T. lizonae, which primarily parasitizes a single species, E. hamatum. Here we provide a dichotomous key along with diagnostic molecular characters for identification of Tetradonia species at La Selva Biological Station. By reliably assessing biodiversity and providing tools for species identification, we hope to set the baseline for future studies of the ecological and evolutionary dynamics in these species-rich host-symbiont networks.


Subject(s)
Ants/parasitology , Biodiversity , Coleoptera/physiology , Symbiosis , Animals , Ants/classification , Aspartate Carbamoyltransferase/classification , Aspartate Carbamoyltransferase/genetics , Carbamoyl-Phosphate Synthase (Glutamine-Hydrolyzing)/classification , Carbamoyl-Phosphate Synthase (Glutamine-Hydrolyzing)/genetics , Coleoptera/classification , Coleoptera/genetics , Costa Rica , DNA Barcoding, Taxonomic/methods , DNA, Mitochondrial/chemistry , DNA, Mitochondrial/genetics , Dihydroorotase/classification , Dihydroorotase/genetics , Electron Transport Complex IV/classification , Electron Transport Complex IV/genetics , Host Specificity , Insect Proteins/classification , Insect Proteins/genetics , Phylogeny , Species Specificity
2.
Biochemistry ; 44(38): 12728-36, 2005 Sep 27.
Article in English | MEDLINE | ID: mdl-16171387

ABSTRACT

The amidohydrolase superfamily comprises hundreds of hydrolytic enzymes of the (beta/alpha)8 barrel fold with mono- or binuclear active-site metal centers, and a diverse spectrum of substrates and reactions. Promiscuous activities, or cross-reactivities, between different members of the same superfamily may provide important hints regarding evolutionary and mechanistic relationships. We examined three members: dihydroorotase (DHO), phosphotriesterase (PTE), and PTE-homology protein (PHP). Of particular interest are PTE, which is thought to have evolved within the last several decades, and PHP, an amidohydrolase superfamily member of unknown function, and the closest known homologue of PTE. We found a diverse and partially overlapping pattern of promiscuous activities in these enzymes, including a significant lactonase activity in PTE, esterase activities in both PTE and PHP, and a weak PTE activity in DHO. Directed evolution was applied to improve the promiscuous esterase activities of PTE and PHP. Remarkably, the most recurrent mutation increasing esterase activity in PTE, or PHP, maps to the same location in their superposed 3D structures. The evolved variants also exhibit newly acquired promiscuous activities that were not selected for, including very weak, yet measurable, paraoxonase activity in PHP. Our results illustrate the mechanistic, structural, and evolutionary links between these enzymes, and highlight the importance of studying laboratory evolution intermediates that might resemble node intermediates along the evolutionary pathways leading to the divergence of enzyme superfamilies.


Subject(s)
Amidohydrolases/chemistry , Amidohydrolases/metabolism , Dihydroorotase/metabolism , Escherichia coli Proteins/metabolism , Hydrolases/metabolism , Phosphoric Triester Hydrolases/metabolism , Amidohydrolases/classification , Dihydroorotase/chemistry , Dihydroorotase/classification , Directed Molecular Evolution , Escherichia coli Proteins/chemistry , Escherichia coli Proteins/classification , Esterases/chemistry , Esterases/metabolism , Evolution, Molecular , Hydrolases/chemistry , Hydrolases/classification , Hydrolysis , Mutation , Phosphoric Triester Hydrolases/chemistry , Phosphoric Triester Hydrolases/classification , Substrate Specificity
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