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1.
J Biol Chem ; 296: 100186, 2021.
Article in English | MEDLINE | ID: mdl-33310705

ABSTRACT

The substrates O2 and NO cooperatively activate the NO dioxygenase function of Escherichia coli flavohemoglobin. Steady-state and transient kinetic measurements support a structure-based mechanistic model in which O2 and NO movements and conserved amino acids at the E11, G8, E2, E7, B10, and F7 positions within the globin domain control activation. In the cooperative and allosteric mechanism, O2 migrates to the catalytic heme site via a long hydrophobic tunnel and displaces LeuE11 away from the ferric iron, which forces open a short tunnel to the catalytic site gated by the ValG8/IleE15 pair and LeuE11. NO permeates this tunnel and leverages upon the gating side chains triggering the CD loop to furl, which moves the E and F-helices and switches an electron transfer gate formed by LysF7, GlnE7, and water. This allows FADH2 to reduce the ferric iron, which forms the stable ferric-superoxide-TyrB10/GlnE7 complex. This complex reacts with internalized NO with a bimolecular rate constant of 1010 M-1 s-1 forming nitrate, which migrates to the CD loop and unfurls the spring-like structure. To restart the cycle, LeuE11 toggles back to the ferric iron. Actuating electron transfer with O2 and NO movements averts irreversible NO poisoning and reductive inactivation of the enzyme. Together, structure snapshots and kinetic constants provide glimpses of intermediate conformational states, time scales for motion, and associated energies.


Subject(s)
Dihydropteridine Reductase/metabolism , Escherichia coli Proteins/metabolism , Escherichia coli/metabolism , NADH, NADPH Oxidoreductases/metabolism , Oxygenases/metabolism , Allosteric Regulation , Dihydropteridine Reductase/chemistry , Escherichia coli/chemistry , Escherichia coli Infections/microbiology , Escherichia coli Proteins/chemistry , Humans , Models, Molecular , NADH, NADPH Oxidoreductases/chemistry , Nitric Oxide/metabolism , Oxygenases/chemistry , Protein Conformation
2.
Int J Biol Macromol ; 110: 567-572, 2018 Apr 15.
Article in English | MEDLINE | ID: mdl-29355631

ABSTRACT

Quinine dihydropteridinereductase (QDPR) is involved in the synthesis of tetradihydrobiopteridine (BH4) that serve as cofactor for many aromatic hydroxylases including induced nitric oxide synthase (NOS) leading to NO production. Increased activity of QDPR has been associated with decrease levels of TGF-ß, a cytokine that regulates the immune response and that elevated levels of NO has been associated with neurodegenerative diseases. Thus, expression of QDPR in astrocytes is essential to study the pathological changes observed in many neurodegenerative disorders. We have expressed QDPR in astrocytes and generated stably expressing clones that overexpresses QDPR. We further verified the specificity of QDPR expression using immunofluorescence and immunoblotting. To further confirm, we purified QDPR using Ni-NTA column and subjected the purified fraction to immunoblotting using anti-QDPR antibody and identified two major protein products of QDPR resolving at 25 and 17 kDa as reported in the literature. In order to further assess the significance of QDPR expression, we verified the expression of iNOS in QDPR over expressing cells. We show for the first time statistically significant up regulation of iNOS in QDPR overexpressing astrocytes. Increased expression of iNOS associated with astrocyte pathology seen in many neurodegenerative disorders may have implications in autoimmune neurodegenerative disorders.


Subject(s)
Astrocytes/enzymology , Dihydropteridine Reductase , Gene Expression Regulation, Enzymologic , Neurodegenerative Diseases/enzymology , Astrocytes/pathology , Dihydropteridine Reductase/biosynthesis , Dihydropteridine Reductase/chemistry , Dihydropteridine Reductase/genetics , Dihydropteridine Reductase/isolation & purification , Humans , Neurodegenerative Diseases/genetics , Neurodegenerative Diseases/pathology , Nitric Oxide Synthase Type II/biosynthesis , Nitric Oxide Synthase Type II/genetics
3.
Article in English | MEDLINE | ID: mdl-25899859

ABSTRACT

Tetrahydrobiopterin (BH4) is an essential cofactor of aromatic amino acid hydroxylases and nitric oxide synthase so that BH4 plays a key role in many biological processes. BH4 deficiency is associated with numerous metabolic syndromes and neuropsychological disorders. BH4 concentration in mammals is maintained through a de novo synthesis pathway and a regeneration pathway. Previous studies showed that the de novo pathway of BH4 is similar between insects and mammals. However, knowledge about the regeneration pathway of BH4 (RPB) is very limited in insects. Several mutants in the silkworm Bombyx mori have been approved to be associated with BH4 deficiency, which are good models to research on the RPB in insects. In this study, homologous genes encoding two enzymes, pterin-4a-carbinolamine dehydratase (PCD) and dihydropteridine reductase (DHPR) involving in RPB have been cloned and identified from B. mori. Enzymatic activity of DHPR was found in the fat body of wild type silkworm larvae. Together with the transcription profiles, it was indicated that BmPcd and BmDhpr might normally act in the RPB of B. mori and the expression of BmDhpr was activated in the brain and sexual glands while BmPcd was expressed in a wider special pattern when the de novo pathway of BH4 was lacked in lemon. Biochemical analyses showed that the recombinant BmDHPR exhibited high enzymatic activity and more suitable parameters to the coenzyme of NADH in vitro. The results in this report give new information about the RPB in B. mori and help in better understanding insect BH4 biosynthetic networks.


Subject(s)
Biopterins/analogs & derivatives , Bombyx/enzymology , Bombyx/physiology , Dihydropteridine Reductase/metabolism , Hydro-Lyases/metabolism , Larva/physiology , Amino Acid Sequence , Animals , Biopterins/metabolism , Bombyx/chemistry , Dihydropteridine Reductase/chemistry , Dihydropteridine Reductase/genetics , Enzyme Activation , Hydro-Lyases/chemistry , Hydro-Lyases/genetics , Metabolic Networks and Pathways , Molecular Sequence Data , RNA, Messenger/metabolism , Regeneration
4.
Biosens Bioelectron ; 42: 219-24, 2013 Apr 15.
Article in English | MEDLINE | ID: mdl-23208089

ABSTRACT

Escherichia coli flavohemoglobin (HMP), which contains one heme and one FAD as prosthetic groups and is capable of reducing O2 by its heme at the expense of NADH oxidized at its FAD site, was electrochemically studied at graphite (Gr) electrodes. Two signals were observed in voltammograms of HMP adsorbed on Gr, at -477 and -171 mV vs. Ag|AgCl, at pH 7.4, correlating with electrochemical responses from the FAD and heme domains, respectively. The electron transfer rate constant for ET reaction between FAD of HMP and the electrode was estimated to be 83 s⁻¹. Direct bioelectrocatalytic oxidation of NADH by HMP was not observed, presumably due to impeded substrate access to HMP orientated on Gr through the FAD-domain and/or partial denaturation of HMP. Bioelectrocatalysis was achieved when HMP was wired to Gr by the Os redox polymers, with the onset of NADH oxidation at the formal potential of the particular Os complex (+140 mV or -195 mV). Apparent Michaelis constants K(M)(app) and j(max) were determined, showing bioelectrocatalytic efficiency of NADH oxidation by HMP exceeding the one earlier shown with diaphorase, which makes HMP very attractive as a component of bioanalytical and bioenergetic devices.


Subject(s)
Dihydropteridine Reductase/chemistry , Escherichia coli Proteins/chemistry , Graphite/chemistry , Hemeproteins/chemistry , NADH, NADPH Oxidoreductases/chemistry , NAD/chemistry , Oxidation-Reduction , Catalysis , Electrochemistry/methods , Electrodes , Escherichia coli/chemistry
5.
Free Radic Biol Med ; 52(9): 1620-33, 2012 May 01.
Article in English | MEDLINE | ID: mdl-22343413

ABSTRACT

Nitric oxide (NO) is an inevitable product of life in an oxygen- and nitrogen-rich environment. This reactive diatomic molecule exhibits microbial cytotoxicity, in large part by facilitating nitrosative stress and inhibiting heme-containing proteins within the aerobic respiratory chain. Metabolism of NO is therefore essential for microbial life. In many bacteria, fungi, and protozoa, the evolutionarily ancient flavohemoglobin (flavoHb) converts NO and O(2) to inert nitrate (NO(3)(-)) and undergoes catalytic regeneration via flavin-dependent reduction. Since its identification, widespread efforts have characterized roles for flavoHb in microbial nitrosative stress protection. Subsequent genomic studies focused on flavoHb have elucidated the transcriptional machinery necessary for inducible NO protection, such as NsrR in Escherichia coli, as well as additional proteins that constitute a nitrosative stress protection program. As an alternative strategy, flavoHb has been heterologously employed in higher eukaryotic organisms such as plants and human tumors to probe the function(s) of endogenous NO signaling. Such an approach may also provide a therapeutic route to in vivo NO depletion. Here we focus on the molecular features of flavoHb, the hitherto characterized NO-sensitive transcriptional machinery responsible for its induction, the roles of flavoHb in resisting mammalian host defense systems, and heterologous applications of flavoHb in plant/mammalian systems (including human tumors), as well as unresolved questions surrounding this paradigmatic NO-consuming enzyme.


Subject(s)
Dihydropteridine Reductase/physiology , Escherichia coli Proteins/physiology , Hemeproteins/physiology , NADH, NADPH Oxidoreductases/physiology , Nitrosation , Oxidative Stress , Aerobiosis , Amino Acid Sequence , Anaerobiosis , Dihydropteridine Reductase/chemistry , Dihydropteridine Reductase/genetics , Escherichia coli Proteins/chemistry , Escherichia coli Proteins/genetics , Gene Expression Regulation, Bacterial , Hemeproteins/chemistry , Hemeproteins/genetics , Humans , Molecular Sequence Data , NADH, NADPH Oxidoreductases/chemistry , NADH, NADPH Oxidoreductases/genetics , Nitric Oxide/physiology , Protein Conformation , Sequence Homology, Amino Acid , Transcription, Genetic
6.
J Biol Chem ; 286(12): 10429-38, 2011 Mar 25.
Article in English | MEDLINE | ID: mdl-21239486

ABSTRACT

Leishmania parasites are pteridine auxotrophs that use an NADPH-dependent pteridine reductase 1 (PTR1) and NADH-dependent quinonoid dihydropteridine reductase (QDPR) to salvage and maintain intracellular pools of tetrahydrobiopterin (H(4)B). However, the African trypanosome lacks a credible candidate QDPR in its genome despite maintaining apparent QDPR activity. Here we provide evidence that the NADH-dependent activity previously reported by others is an assay artifact. Using an HPLC-based enzyme assay, we demonstrate that there is an NADPH-dependent QDPR activity associated with both TbPTR1 and LmPTR1. The kinetic properties of recombinant PTR1s are reported at physiological pH and ionic strength and compared with LmQDPR. Specificity constants (k(cat)/K(m)) for LmPTR1 are similar with dihydrobiopterin (H(2)B) and quinonoid dihydrobiopterin (qH(2)B) as substrates and about 20-fold lower than LmQDPR with qH(2)B. In contrast, TbPTR1 shows a 10-fold higher k(cat)/K(m) for H(2)B over qH(2)B. Analysis of Trypanosoma brucei isolated from infected rats revealed that H(4)B (430 nM, 98% of total biopterin) was the predominant intracellular pterin, consistent with a dual role in the salvage and regeneration of H(4)B. Gene knock-out experiments confirmed this: PTR1-nulls could only be obtained from lines overexpressing LmQDPR with H(4)B as a medium supplement. These cells grew normally with H(4)B, which spontaneously oxidizes to qH(2)B, but were unable to survive in the absence of pterin or with either biopterin or H(2)B in the medium. These findings establish that PTR1 has an essential and dual role in pterin metabolism in African trypanosomes and underline its potential as a drug target.


Subject(s)
Leishmania major/enzymology , Oxidoreductases/metabolism , Protozoan Proteins/metabolism , Trypanosoma cruzi/enzymology , Animals , Dihydropteridine Reductase/chemistry , Dihydropteridine Reductase/genetics , Dihydropteridine Reductase/metabolism , Gene Knockdown Techniques , Hydrogen-Ion Concentration , Kinetics , Leishmania major/genetics , Oxidoreductases/chemistry , Oxidoreductases/genetics , Protozoan Proteins/chemistry , Protozoan Proteins/genetics , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Species Specificity , Trypanosoma cruzi/genetics
7.
Biotechniques ; 50(1): 41-5, 2011 Jan.
Article in English | MEDLINE | ID: mdl-21231921

ABSTRACT

A wide range of mammalian signaling and stress pathways are mediated by nitric oxide (NO), which is synthesized in vivo by the nitric oxide synthase (NOS) family of enzymes. Experimental manipulations of NO are frequently achieved by either inhibition or activation of endogenous NOS or via providing exogenous NO sources. On the contrary, many microbes consume NO via flavohemoglobin (FlavoHb), a highly efficient NO-dioxygenase that protects from nitrosative stress. Here we report a novel resource for studying NO in mammalian cells by heterologously expressing Escherichia coli FlavoHb within a lentiviral delivery system. This technique boosts endogenous cellular consumption of NO, thus providing a simple and efficacious approach to studying mammalian NO biology that can be employed as both a primary experimental and confirmatory tool.


Subject(s)
Dihydropteridine Reductase/chemistry , Escherichia coli Proteins/chemistry , Hemeproteins/chemistry , NADH, NADPH Oxidoreductases/chemistry , Nitric Oxide/metabolism , Dihydropteridine Reductase/analysis , Dihydropteridine Reductase/genetics , Escherichia coli/genetics , Escherichia coli Proteins/analysis , Escherichia coli Proteins/genetics , Flavin-Adenine Dinucleotide/chemistry , HEK293 Cells , Hemeproteins/analysis , Hemeproteins/genetics , Humans , Lentivirus/genetics , NADH, NADPH Oxidoreductases/analysis , NADH, NADPH Oxidoreductases/genetics , Nitric Oxide/chemistry , Nitric Oxide Synthase Type II/genetics , Nitric Oxide Synthase Type II/metabolism , Oxidation-Reduction , Signal Transduction , Transfection/methods
8.
Proteomics ; 9(21): 4851-8, 2009 Nov.
Article in English | MEDLINE | ID: mdl-19743417

ABSTRACT

To identify the new targets for hypertension, we analyzed the protein expression profiles of aortic smooth muscle in spontaneously hypertensive rats (SHR) of various ages during the development of hypertension, as well as in age-matched normotensive Wistar-Kyoto (WKY) rats, using a proteomic analysis. The expressions of seven proteins were altered in SHR compared with WKY rats. Of these proteins, NADH dehydrogenase 1alpha, GSTomega1, peroxi-redoxin I and transgelin were upregulated in SHR compared with WKY rats. On the other hand, the expression of HSP27 and Ran protein decreased in SHR. The diminution of dihydrobiopterin reductase, an enzyme located in the regeneration pathways of tetrahydrobiopterin (BH4), was also prominent in SHR. The results from a PCR analysis revealed that the expression of BH4 biosynthesis enzymes - GTP cyclohydrolase-1 and sepiapterin reductase - decreased and increased, respectively, in SHR compared with WKY rats. The level of BH4 was less in aortic strips from SHR than from WKY rats. Moreover, treatment with BH4 inhibited aortic smooth muscle contraction induced by serotonin. These results suggest that the deficiency in BH4 regeneration produced by diminished dihydrobiopterin reductase expression is involved in vascular disorders in hypertensive rats.


Subject(s)
Aorta/enzymology , Dihydropteridine Reductase/metabolism , Hypertension/enzymology , Muscle, Smooth/enzymology , Amino Acid Sequence , Animals , Biomarkers/metabolism , Biopterins/analogs & derivatives , Biopterins/metabolism , Blood Pressure , Dihydropteridine Reductase/chemistry , Dihydropteridine Reductase/genetics , Gene Expression Regulation, Enzymologic , Hypertension/physiopathology , Male , Molecular Sequence Data , Proteomics , Rats , Rats, Inbred SHR , Rats, Inbred WKY
9.
Acta Crystallogr Sect F Struct Biol Cryst Commun ; 64(Pt 11): 1013-5, 2008 Nov 01.
Article in English | MEDLINE | ID: mdl-18997329

ABSTRACT

Dihydropteridine reductase from Dictyostelium discoideum (dicDHPR) can produce D-threo-BH(4) [6R-(1'R,2'R)-5,6,7,8-tetrahydrobiopterin], a stereoisomer of L-erythro-BH(4), in the last step of tetrahydrobiopterin (BH(4)) recycling. In this reaction, DHPR uses NADH as a cofactor to reduce quinonoid dihydrobiopterin back to BH(4). To date, the enzyme has been purified to homogeneity from many sources. In this report, the dicDHPR-NAD complex has been crystallized using the hanging-drop vapour-diffusion method with PEG 3350 as a precipitant. Rectangular-shaped crystals were obtained. Crystals grew to maximum dimensions of 0.4 x 0.6 x 0.1 mm. The crystal belonged to space group P2(1), with unit-cell parameters a = 49.81, b = 129.90, c = 78.76 A, beta = 100.00 degrees , and contained four molecules in the asymmetric unit, forming two closely interacting dicDHPR-NAD dimers. Diffraction data were collected to 2.16 A resolution using synchrotron radiation. The crystal structure has been determined using the molecular-replacement method.


Subject(s)
Dictyostelium/enzymology , Dihydropteridine Reductase/chemistry , Protozoan Proteins/chemistry , Animals , Crystallization/methods , Crystallography, X-Ray , Dihydropteridine Reductase/isolation & purification , Humans , Models, Molecular , Molecular Sequence Data , Molecular Structure , Protein Multimerization , Protein Structure, Quaternary , Protozoan Proteins/isolation & purification
10.
Environ Microbiol ; 10(11): 3174-83, 2008 Nov.
Article in English | MEDLINE | ID: mdl-18355323

ABSTRACT

The Rhodobacter capsulatus nprA gene codes for a putative nitroreductase. A recombinant His(6)-NprA protein was overproduced in Escherichia coli and purified by affinity chromatography. This protein contained FMN and showed nitroreductase activity with a wide range of nitroaromatic compounds, such as 2-nitrophenol, 2,4-dinitrophenol, 2,6-dinitrophenol, 2,4,6-trinitrophenol (picric acid), 2,4-dinitrobenzoate and 2,4-dinitrotoluene, and with the nitrofuran derivatives nitrofurazone and furazolidone. NADPH was the main electron donor and the ortho nitro group was preferably reduced to the corresponding amino derivative. The apparent K(m) values of NprA for NADPH, 2,4-dinitrophenol, picric acid and furazolidone were 40 microM, 78 microM, 72 microM and 83 microM, respectively, at pH and temperature optima (pH 6.5, 30 degrees C). Escherichia coli cells overproducing the NprA protein were much more sensitive to the prodrug 5-(aziridin-1-yl)-2,4-dinitrobenzamide (CB1954) used in cancer therapy than non-transformed cells. NprA showed the highest activity with the quinonoid form of 6,7-dimethyl-7,8-dihydropterine as substrate, so that NprA may be involved in the synthesis of tetrahydrobiopterin in R. capsulatus. Expression of a transcriptional nprA-lacZ gene fusion was induced by phenylalanine or tyrosine, but not by other amino acids like glutamate or alanine. Furthermore, both nitroreductase activity and phenylalanine assimilation were inhibited in vivo by ammonium. A mutant defective in the nprA gene showed better growth rate with Phe or Tyr as nitrogen source than the wild-type strain, although both strains showed similar growth in media with Glu or without added nitrogen. These results suggest that the NprA nitroreductase may act in vivo as a dihydropteridine reductase involved in aromatic amino acids metabolism.


Subject(s)
2,4-Dinitrophenol/metabolism , Bacterial Proteins/metabolism , Dihydropteridine Reductase/metabolism , Rhodobacter capsulatus/enzymology , Bacterial Proteins/genetics , Bacterial Proteins/isolation & purification , Cloning, Molecular , Coenzymes/analysis , Dihydropteridine Reductase/chemistry , Dihydropteridine Reductase/genetics , Dihydropteridine Reductase/isolation & purification , Escherichia coli/genetics , Flavin Mononucleotide/analysis , Gene Deletion , Gene Expression , Gene Expression Regulation, Bacterial , Gene Expression Regulation, Enzymologic , Hydrogen-Ion Concentration , Kinetics , NADP/metabolism , Recombinant Proteins/biosynthesis , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/isolation & purification , Rhodobacter capsulatus/genetics , Substrate Specificity , Temperature
11.
Methods Enzymol ; 436: 187-202, 2008.
Article in English | MEDLINE | ID: mdl-18237633

ABSTRACT

The key three-dimensional features of flavohemoglobins have been unveiled by X-ray crystallographic investigations carried out on the Alcaligenes eutrophus and Escherichia coli proteins. Flavohemoglobins are made of a globin domain fused with a ferredoxin reductase-like FAD binding module and display highly conserved sequences in the active sites of both the heme-binding domain and the flavin-binding domain. Structural studies are discussed and methodological approaches to the solution of the crystal structures and to the analysis of the relevant stereochemical properties of the active sites are presented. The understanding of the structural properties of flavohemoglobins serves as a guide for testing biological hypotheses and allows for a rational evaluation of structure-based alignments within the flavohemoglobin family.


Subject(s)
Bacterial Proteins/chemistry , Dihydropteridine Reductase/chemistry , Escherichia coli Proteins/chemistry , Hemeproteins/chemistry , NADH, NADPH Oxidoreductases/chemistry , Amino Acid Sequence , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Binding Sites , Crystallography, X-Ray , Cupriavidus necator/chemistry , Cupriavidus necator/genetics , Dihydropteridine Reductase/genetics , Dihydropteridine Reductase/metabolism , Escherichia coli/chemistry , Escherichia coli/genetics , Escherichia coli Proteins/genetics , Escherichia coli Proteins/metabolism , Flavin-Adenine Dinucleotide/metabolism , Heme/metabolism , Hemeproteins/genetics , Hemeproteins/metabolism , Models, Molecular , Molecular Sequence Data , NAD/metabolism , NADH, NADPH Oxidoreductases/genetics , NADH, NADPH Oxidoreductases/metabolism , Phospholipids/chemistry , Protein Folding , Protein Structure, Tertiary , Sequence Homology, Amino Acid , Species Specificity
12.
Methods Enzymol ; 436: 217-37, 2008.
Article in English | MEDLINE | ID: mdl-18237635

ABSTRACT

A variety of hemoglobins, including several microbial flavohemoglobins, enzymatically dioxygenate the free radical nitric oxide (*NO) to form nitrate. Many of these *NO dioxygenases have been shown to control *NO toxicity and signaling. Furthermore, *NO dioxygenation appears to be an ancient and intrinsic function for members of the hemoglobin superfamily found in Archaea, eukaryotes, and bacteria. Yet for many hemoglobins, a function remains to be elucidated. Methods for the assay and characterization of the *NO dioxygenase (EC 1.14.12.17) activity and function of flavohemoglobins are described. The methods may also be applied to the discovery and design of inhibitors for use as antibiotics or as modulators of *NO signaling.


Subject(s)
Bacterial Proteins/metabolism , Dihydropteridine Reductase/metabolism , Escherichia coli Proteins/metabolism , Hemeproteins/metabolism , NADH, NADPH Oxidoreductases/metabolism , Oxygenases/analysis , Oxygenases/metabolism , Bacterial Proteins/chemistry , Chemistry Techniques, Analytical/instrumentation , Chemistry Techniques, Analytical/methods , Dihydropteridine Reductase/chemistry , Equipment Design , Escherichia coli Proteins/chemistry , Flavin-Adenine Dinucleotide/analysis , Flavin-Adenine Dinucleotide/chemistry , Heme/analysis , Heme/chemistry , Hemeproteins/chemistry , Hemoglobins/chemistry , Hemoglobins/metabolism , Indicators and Reagents , Methemoglobin/chemistry , Methemoglobin/metabolism , NADH, NADPH Oxidoreductases/chemistry , Nitrates/analysis , Nitric Oxide/antagonists & inhibitors , Nitric Oxide/metabolism , Nitrites/analysis , Oxidation-Reduction , Oxygenases/antagonists & inhibitors , Oxygenases/chemistry
13.
Methods Enzymol ; 436: 239-53, 2008.
Article in English | MEDLINE | ID: mdl-18237636

ABSTRACT

Many bacterial globins have been demonstrated to interact with membrane lipids, and several hypotheses in support of a functional role for membrane localization have been set forth. Bacterial globins have been suggested to facilitate oxygen diffusion to terminal oxidases, to protect oxidases from nitric oxide or eventually to preserve the integrity of the membrane lipids through peroxide-reducing activities as a response to oxidative/nitrosative stress. In this framework, methodological approaches to the study of globin-membrane interactions need to be analyzed in depth in order to single out the relevant features of these interactions and to clearly distinguish the specific membrane and lipid binding process from trivial effects related to the possible partitioning of the lipid side chains to the hydrophobic heme pocket or to the presence of partially folded, insoluble protein aggregates within membranous pellets. Methods for qualitative lipid analysis, liposome-protein binding studies, and analysis of protein insertion into lipid monolayer are thus described with the aim of providing rapid and efficient screening of specific globin-membrane interactions.


Subject(s)
Globins/chemistry , Lipids/chemistry , Membranes/chemistry , Bacterial Proteins/chemistry , Chromatography, Gel , Dihydropteridine Reductase/chemistry , Escherichia coli/chemistry , Escherichia coli Proteins/chemistry , Esterification , Gas Chromatography-Mass Spectrometry , Hemeproteins/chemistry , Hemoglobins/chemistry , Kinetics , Liposomes , Membrane Lipids/chemistry , NADH, NADPH Oxidoreductases/chemistry , Protein Binding , Spectrophotometry , Truncated Hemoglobins/chemistry
14.
J Mol Biol ; 376(3): 879-97, 2008 Feb 22.
Article in English | MEDLINE | ID: mdl-18187151

ABSTRACT

Despite the widespread presence of the globin fold in most living organisms, only eukaryotic globins have been employed as model proteins in folding/stability studies so far. This work introduces the first thermodynamic and kinetic characterization of a prokaryotic globin, that is, the apo form of the heme-binding domain of flavohemoglobin (apoHmpH) from Escherichia coli. This bacterial globin has a widely different sequence but nearly identical structure to its eukaryotic analogues. We show that apoHmpH is a well-folded monomeric protein with moderate stability at room temperature [apparent Delta G degrees (UN(w))=-3.1+/-0.3 kcal mol(-1); m(UN)=-1.7 kcal mol(-1) M(-1)] and predominant alpha-helical structure. Remarkably, apoHmpH is the fastest-folding globin known to date, as it refolds about 4- to 16-fold more rapidly than its eukaryotic analogues (e.g., sperm whale apomyoglobin and soybean apoleghemoglobin), populating a compact kinetic intermediate (beta(I)=0.9+/-0.2) with significant helical content. Additionally, the single Trp120 (located in the native H helix) becomes locked into a fully native-like environment within 6 ms, suggesting that this residue and its closest spatial neighbors complete their folding at ultrafast (submillisecond) speed. In summary, apoHmpH is a bacterial globin that shares the general folding scheme (i.e., a rapid burst phase followed by slower rate-determining phases) of its eukaryotic analogues but displays an overall faster folding and a kinetic intermediate with some fully native-like traits. This study supports the view that the general folding features of bacterial and eukaryotic globins are preserved through evolution while kinetic details differ.


Subject(s)
Dihydropteridine Reductase/chemistry , Dihydropteridine Reductase/metabolism , Escherichia coli Proteins/chemistry , Escherichia coli Proteins/metabolism , Globins/chemistry , Globins/metabolism , Hemeproteins/chemistry , Hemeproteins/metabolism , NADH, NADPH Oxidoreductases/chemistry , NADH, NADPH Oxidoreductases/metabolism , Amino Acid Sequence , Animals , Escherichia coli/chemistry , Escherichia coli/metabolism , Evolution, Molecular , Kinetics , Models, Molecular , Molecular Sequence Data , Protein Folding , Thermodynamics
15.
Biochemistry ; 45(13): 4069-76, 2006 Apr 04.
Article in English | MEDLINE | ID: mdl-16566580

ABSTRACT

The interaction of the recombinant hemoglobin from Vitreoscilla sp. (VHb) with the bacterial membrane of Escherichia coli cells has been investigated by measuring the propensity of VHb to interact with monolayers formed by natural bacterial phosholipids. The measurements showed that the protein is capable of penetrating the monolayers, possibly establishing interactions with the hydrophobic acyl chains. VHb is also capable of binding reversibly phospholipids and free fatty acids in solution with a strong selectivity toward cyclopropanated acyl chain species. Lipid binding occurs within the distal heme pocket as demonstrated by a sharp UV-vis spectral change corresponding to a five-coordinate to six-coordinate transition of the heme-iron ferric derivative. Oxygen binding properties are affected by the presence of the lipid component within the active site. In particular, the oxygen affinity is decreased by more than 20-fold in the presence of cyclopropanated phospholipids. The kinetic counterpart of the decrease in oxygen affinity is manifest in a 10-fold decrease in the ligand combination kinetics. Accordingly, the CO and NO combination kinetics were also significantly affected by the presence of the bound lipid within the active site. These studies indicate that the current functional hypotheses about VHb should take into account the association of the protein within the cytoplasmic membrane as well as the presence of a phospholipid within the active site. These data suggest a possible lipid-induced regulation of oxygen affinity as the basis of VHb functioning.


Subject(s)
Bacterial Proteins/chemistry , Hemoglobins/chemistry , Membrane Lipids/chemistry , Binding Sites , Carbon Monoxide/chemistry , Dihydropteridine Reductase/chemistry , Escherichia coli/metabolism , Escherichia coli Proteins/chemistry , Hemeproteins/chemistry , Kinetics , NADH, NADPH Oxidoreductases/chemistry , Nitric Oxide/chemistry , Oxygen/chemistry , Oxygen/metabolism , Spectrophotometry, Ultraviolet , Surface Properties/drug effects , Truncated Hemoglobins
16.
J Inorg Biochem ; 99(1): 247-66, 2005 Jan.
Article in English | MEDLINE | ID: mdl-15598505

ABSTRACT

Microbial flavohemoglobins (flavoHbs) and hemoglobins (Hbs) show large *NO dioxygenation rate constants ranging from 745 to 2900 microM(-1) s(-1) suggesting a primal *NO dioxygenase (NOD) (EC 1.14.12.17) function for the ancient Hb superfamily. Indeed, modern O2-transporting and storing mammalian red blood cell Hb and related muscle myoglobin (Mb) show vestigial *NO dioxygenation activity with rate constants of 34-89 microM(-1) s(-1). In support of a NOD function, microbial flavoHbs and Hbs catalyze O2-dependent cellular *NO metabolism, protect cells from *NO poisoning, and are induced by *NO exposures. Red blood cell Hb, myocyte Mb, and flavoHb-like activities metabolize *NO in the vascular lumen, muscle, and other mammalian cells, respectively, decreasing *NO signalling and toxicity. HbFe(III)-OO*, HbFe(III)-OONO and protein-caged [HbFe(III)-O**NO2] are proposed intermediates in a reaction mechanism that combines both O-atoms of O2 with *NO to form nitrate and HbFe(III). A conserved Hb heme pocket structure facilitates the dioxygenation reaction and efficient turnover is achieved through the univalent reduction of HbFe(III) by associated reductases. High affinity flavoHb and Hb heme ligands, and other inhibitors, may find application as antibiotics and antitumor agents that enhance the toxicity of immune cell-derived *NO or as vasorelaxants that increase *NO signalling.


Subject(s)
Dihydropteridine Reductase/metabolism , Escherichia coli Proteins/metabolism , Hemeproteins/metabolism , Hemoglobins/metabolism , Myoglobin/metabolism , NADH, NADPH Oxidoreductases/metabolism , Oxidoreductases/metabolism , Oxygenases/metabolism , Amino Acid Sequence , Animals , Dihydropteridine Reductase/chemistry , Escherichia coli Proteins/chemistry , Hemeproteins/chemistry , Hemoglobins/chemistry , Models, Molecular , Molecular Sequence Data , Molecular Structure , Myoglobin/chemistry , NADH, NADPH Oxidoreductases/chemistry , Nitric Oxide/chemistry , Nitric Oxide/metabolism , Oxygenases/antagonists & inhibitors , Protein Structure, Tertiary , Sequence Homology, Amino Acid , Signal Transduction/physiology
17.
Biophys J ; 86(6): 3882-92, 2004 Jun.
Article in English | MEDLINE | ID: mdl-15189885

ABSTRACT

Escherichia coli flavohemoglobin is endowed with the notable property of binding specifically unsaturated and/or cyclopropanated fatty acids both as free acids or incorporated into a phospholipid molecule. Unsaturated or cyclopropanated fatty acid binding to the ferric heme results in a spectral change observed in the visible absorption, resonance Raman, extended x-ray absorption fine spectroscopy (EXAFS), and x-ray absorption near edge spectroscopy (XANES) spectra. Resonance Raman spectra, measured on the flavohemoglobin heme domain, demonstrate that the lipid (linoleic acid or total lipid extracts)-induced spectral signals correspond to a transition from a five-coordinated (typical of the ligand-free protein) to a hexacoordinated, high spin heme iron. EXAFS and XANES measurements have been carried out both on the lipid-free and on the lipid-bound protein to assign the nature of ligand in the sixth coordination position of the ferric heme iron. EXAFS data analysis is consistent with the presence of a couple of atoms in the sixth coordination position at 2.7 A in the lipid-bound derivative (bonding interaction), whereas a contribution at 3.54 A (nonbonding interaction) can be singled out in the lipid-free protein. This last contribution is assigned to the CD1 carbon atoms of the distal LeuE11, in full agreement with crystallographic data on the lipid-free protein at 1.6 A resolution obtained in the present work. Thus, the contributions at 2.7 A distance from the heme iron are assigned to a couple of carbon atoms of the lipid acyl chain, possibly corresponding to the unsaturated carbons of the linoleic acid.


Subject(s)
Dihydropteridine Reductase/chemistry , Escherichia coli Proteins/chemistry , Fatty Acids/chemistry , Heme/chemistry , Hemeproteins/chemistry , Iron/chemistry , Lipids/chemistry , NADH, NADPH Oxidoreductases/chemistry , Cloning, Molecular , Crystallization , Escherichia coli/chemistry , Models, Molecular , Spectrum Analysis
18.
J Invest Dermatol ; 122(2): 307-13, 2004 Feb.
Article in English | MEDLINE | ID: mdl-15009710

ABSTRACT

To date there is ample evidence that patients with vitiligo accumulate millimolar concentrations of hydrogen peroxide (H2O2) in their epidermis as well as in their blood lymphocytes/monocytes. Several enzymes are affected by this H2O2 including catalase, glutathione peroxidase, and 4 alpha-carbinolamine dehydratase. The latter enzyme disrupts the recycling of the essential cofactor (6R)-L-erythro-5,6,7,8-tetrahydrobiopterin (6BH4) for the aromatic amino acid hydroxylases as well as the nitric oxide synthases. In this report we have elucidated the influence of H2O2 on dihydropteridine reductase (DHPR), the last enzyme in the 6BH4-recycling process. Here we show for the first time that concentrations of less than 30 microM H2O2 increase DHPR activities, whereas levels greater than 30 microM H2O2 deactivate the enzyme based on the oxidation of Met146 and Met151 in the sequence, consequently leading to disruption of the NADH-dependent enzyme active site. This oxidation was confirmed by Fourier transform-Raman spectroscopy yielding the expected SO band at 1025 cm-1 characteristic of methionine sulfoxide. Hence these results unmasked a novel regulatory mechanism for DHPR enzyme activity. Moreover, we also demonstrated that DHPR activities in whole blood of patients with vitiligo are significantly decreased in untreated patients, whereas activities are normalized after removal of epidermal H2O2 with a topical pseudocatalase (PC-KUS). Taken together, these new data add more evidence to a systemic involvement of H2O2 in the pathomechanism of vitiligo.


Subject(s)
Biopterins/analogs & derivatives , Biopterins/metabolism , Dihydropteridine Reductase/metabolism , Hydrogen Peroxide/metabolism , Vitiligo/metabolism , Adolescent , Adult , Aged , Binding Sites/drug effects , Computer Simulation , Dihydropteridine Reductase/chemistry , Dihydropteridine Reductase/genetics , Female , Gene Expression Regulation, Enzymologic , Humans , Hydrogen Peroxide/pharmacology , Male , Methionine/metabolism , Middle Aged , Models, Biological , Oxidants/metabolism , Oxidants/pharmacology , Oxidation-Reduction , Oxidative Stress/drug effects , Oxidative Stress/physiology , Protein Structure, Tertiary , RNA, Messenger/analysis
20.
J Biol Chem ; 278(37): 34975-82, 2003 Sep 12.
Article in English | MEDLINE | ID: mdl-12826671

ABSTRACT

Escherichia coli possesses a two-domain flavohemoglobin, Hmp, implicated in nitric oxide (NO) detoxification. To determine the contribution of each domain of Hmp toward NO detoxification, we genetically engineered the Hmp protein and separately expressed the heme (HD) and the flavin (FD) domains in a defined hmp mutant. Expression of each domain was confirmed by Western blot analysis. CO-difference spectra showed that the HD of Hmp can bind CO, but the CO adduct showed a slightly blue-shifted peak. Overexpression of the HD resulted in an improvement of growth to a similar extent to that observed with the Vitreoscilla hemeonly globin Vgb, whereas the FD alone did not improve growth. Viability of the hmp mutant in the presence of lethal concentrations of sodium nitroprusside was increased (to 30% survival after 2 h in 5 mM sodium nitroprusside) by overexpressing Vgb or the HD. However, maximal protection was provided only by holo-Hmp (75% survival under the same conditions). Cellular respiration of the hmp mutant was instantaneously inhibited in the presence of 13.5 microM NO but remained insensitive to NO inhibition when these cells overexpressed Hmp. When HD or FD was expressed separately, no significant protection was observed. By contrast, overexpression of Vgb provided partial protection from NO respiratory inhibition. Our results suggest that, despite the homology between the HD from Hmp and Vgb (45% identity), their roles seem to be quite distinct.


Subject(s)
Dihydropteridine Reductase/physiology , Escherichia coli Proteins/physiology , Escherichia coli/metabolism , Heme/metabolism , Hemeproteins/physiology , NADH, NADPH Oxidoreductases/physiology , Nitric Oxide/pharmacology , Nitroprusside/pharmacology , Oxygen Consumption/drug effects , Amino Acid Sequence , Binding Sites , Carbon Monoxide/metabolism , Cell-Free System , Dihydropteridine Reductase/chemistry , Escherichia coli/drug effects , Escherichia coli/genetics , Escherichia coli Proteins/chemistry , Genotype , Hemeproteins/chemistry , Kinetics , Molecular Sequence Data , NADH, NADPH Oxidoreductases/chemistry , Peptide Fragments/physiology , Sequence Alignment , Sequence Homology, Amino Acid
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