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1.
Nat Commun ; 15(1): 5157, 2024 Jun 17.
Article in English | MEDLINE | ID: mdl-38886340

ABSTRACT

The eukaryotic asparagine (N)-linked glycan is pre-assembled as a fourteen-sugar oligosaccharide on a lipid carrier in the endoplasmic reticulum (ER). Seven sugars are first added to dolichol pyrophosphate (PP-Dol) on the cytoplasmic face of the ER, generating Man5GlcNAc2-PP-Dol (M5GN2-PP-Dol). M5GN2-PP-Dol is then flipped across the bilayer into the lumen by an ER translocator. Genetic studies identified Rft1 as the M5GN2-PP-Dol flippase in vivo but are at odds with biochemical data suggesting Rft1 is dispensable for flipping in vitro. Thus, the question of whether Rft1 plays a direct or an indirect role during M5GN2-PP-Dol translocation has been controversial for over two decades. We describe a completely reconstituted in vitro assay for M5GN2-PP-Dol translocation and demonstrate that purified Rft1 catalyzes the translocation of M5GN2-PP-Dol across the lipid bilayer. These data, combined with in vitro results demonstrating substrate selectivity and rft1∆ phenotypes, confirm the molecular identity of Rft1 as the M5GN2-PP-Dol ER flippase.


Subject(s)
Endoplasmic Reticulum , Endoplasmic Reticulum/metabolism , Saccharomyces cerevisiae Proteins/metabolism , Saccharomyces cerevisiae Proteins/genetics , Saccharomyces cerevisiae/metabolism , Saccharomyces cerevisiae/genetics , Biological Transport , Oligosaccharides/metabolism , Dolichol Phosphates/metabolism , Dolichol Phosphates/genetics , Lipid Bilayers/metabolism , Phospholipid Transfer Proteins/metabolism , Phospholipid Transfer Proteins/genetics , Intracellular Membranes/metabolism , Lipopolysaccharides
2.
Sheng Wu Gong Cheng Xue Bao ; 40(6): 1833-1844, 2024 Jun 25.
Article in Chinese | MEDLINE | ID: mdl-38914494

ABSTRACT

Protein folding and quality control processes primarily occur in the endoplasmic reticulum (ER). ER-resident molecular chaperones play a crucial role in guiding nascent polypeptides towards their correct tertiary structures. Some of these chaperones specifically recognize glucosylated N-glycan moieties on peptide. It is of great significance to study the N-glycan biosynthetic pathway and glycoprotein quality control system by analyzing the sugar donor of ER luminal glucosyltransferases, known as dolichol phosphate glucose (Dol-P-Glc), or its analogues in vitro. In this study, we investigated a range of dolichol analogues to synthesize lipid phosphate glucose, which served as substrates for dolichyl-phosphate ß-glucosyltransferase E (Alg5E) derived from Trichomonas vaginalis. The results demonstrated that the recombinant Alg5E, expressed in Escherichia coli, exhibited strong catalytic activity and the ability to recognize lipid phosphate glucose with varying chain lengths. Interestingly, the enzyme's catalytic reaction was found to be faster with longer carbon chains in the substrate. Additionally, Alg5E showed a preference for branched chain methyl groups in the lipid structure. Furthermore, our study confirmed the importance of divalent metal ions in the binding of the crucial DXD motif, which is essential for the enzyme's catalytic function. These findings lay the groundwork for future research on glucosyltransferases Alg6, Alg8, and Alg10 in the synthesis pathway of dolichol-linked oligosaccharide (DLO).


Subject(s)
Glucosyltransferases , Glucosyltransferases/metabolism , Glucosyltransferases/genetics , Substrate Specificity , Escherichia coli/genetics , Escherichia coli/metabolism , Trichomonas vaginalis/enzymology , Trichomonas vaginalis/genetics , Recombinant Proteins/metabolism , Recombinant Proteins/genetics , Recombinant Proteins/chemistry , Dolichol Phosphates/metabolism , Endoplasmic Reticulum/metabolism , Endoplasmic Reticulum/enzymology
3.
J Biol Chem ; 299(2): 102911, 2023 02.
Article in English | MEDLINE | ID: mdl-36642187

ABSTRACT

The attachment of a sugar to a hydrophobic lipid carrier is the first step in the biosynthesis of many glycoconjugates. In the halophilic archaeon Haloarcula hispanica, HAH_1206, renamed AepG, is a predicted glycosyltransferase belonging to the CAZy Group 2 family that shares a conserved amino acid sequence with dolichol phosphate mannose synthases. In this study, the function of AepG was investigated by genetic and biochemical approaches. We found that aepG deletion led to the disappearance of dolichol phosphate-glucuronic acid. Our biochemical assays revealed that recombinant cellulose-binding, domain-tagged AepG could catalyze the formation of dolichol phosphate-glucuronic acid in time- and dose-dependent manners. Based on the in vivo and in vitro analyses, AepG was confirmed to be a dolichol phosphate glucuronosyltransferase involved in the synthesis of the acidic exopolysaccharide produced by H. hispanica. Furthermore, lack of aepG resulted in hindered growth and cell aggregation in high salt medium, indicating that AepG is vital for the adaptation of H. hispanica to a high salt environment. In conclusion, AepG is the first dolichol phosphate glucuronosyltransferase identified in any of the three domains of life and, moreover, offers a starting point for further investigation into the diverse pathways used for extracellular polysaccharide biosynthesis in archaea.


Subject(s)
Haloarcula , Amino Acid Sequence , Dolichol Phosphates/metabolism , Haloarcula/metabolism , Transferases/metabolism , Polysaccharides/metabolism
4.
Anal Chem ; 95(6): 3210-3217, 2023 02 14.
Article in English | MEDLINE | ID: mdl-36716239

ABSTRACT

Dolichyl monophosphates (DolPs) are essential lipids in glycosylation pathways that are highly conserved across almost all domains of life. The availability of DolP is critical for all glycosylation processes, as these lipids serve as membrane-anchored building blocks used by various types of glycosyltransferases to generate complex post-translational modifications of proteins and lipids. The analysis of DolP species by reverse-phase liquid chromatography-mass spectrometry (RPLC-MS) remains a challenge due to their very low abundance and wide range of lipophilicities. Until now, a method for the simultaneous qualitative and quantitative assessment of DolP species from biological membranes has been lacking. Here, we describe a novel approach based on simple sample preparation, rapid and efficient trimethylsilyl diazomethane-dependent phosphate methylation, and RPLC-MS analysis for quantification of DolP species with different isoprene chain lengths. We used this workflow to selectively quantify DolP species from lipid extracts derived of Saccharomyces cerevisiae, HeLa, and human skin fibroblasts from steroid 5-α-reductase 3- congenital disorders of glycosylation (SRD5A3-CDG) patients and healthy controls. Integration of this workflow with global lipidomics analyses will be a powerful tool to expand our understanding of the role of DolPs in pathophysiological alterations of metabolic pathways downstream of HMG-CoA reductase, associated with CDGs, hypercholesterolemia, neurodegeneration, and cancer.


Subject(s)
Chromatography, Reverse-Phase , Phosphates , Humans , Methylation , Phosphates/metabolism , Mass Spectrometry , Protein Processing, Post-Translational , Dolichol Phosphates/metabolism , Saccharomyces cerevisiae/metabolism
5.
Glycobiology ; 31(12): 1645-1654, 2021 12 30.
Article in English | MEDLINE | ID: mdl-34314490

ABSTRACT

Although Halobacterium salinarum provided the first example of N-glycosylation outside the Eukarya, much regarding such post-translational modification in this halophilic archaea remains either unclear or unknown. The composition of an N-linked glycan decorating both the S-layer glycoprotein and archaellins offers one such example. Originally described some 40 years ago, reports from that time on have presented conflicted findings regarding the composition of this glycan, as well as differences between the protein-bound glycan and that version of the glycan attached to the lipid upon which it is assembled. To clarify these points, liquid chromatography-electrospray ionization mass spectrometry was employed here to revisit the composition of this glycan both when attached to selected asparagine residues of target proteins and when bound to the lipid dolichol phosphate upon which the glycan is assembled. Such efforts revealed the N-linked glycan as corresponding to a tetrasaccharide comprising a hexose, a sulfated hexuronic acid, a hexuronic acid and a second sulfated hexuronic acid. When attached to dolichol phosphate but not to proteins, the same tetrasaccharide is methylated on the final sugar. Moreover, in the absence of the oligosaccharyltransferase AglB, there is an accumulation of the dolichol phosphate-linked methylated and disulfated tetrasaccharide. Knowing the composition of this glycan at both the lipid- and protein-bound stages, together with the availability of gene deletion approaches for manipulating Hbt. salinarum, will allow delineation of the N-glycosylation pathway in this organism.


Subject(s)
Dolichol Phosphates , Haloferax volcanii , Dolichol Phosphates/chemistry , Dolichol Phosphates/metabolism , Dolichols , Glycoproteins/metabolism , Glycosylation , Halobacterium salinarum/metabolism , Haloferax volcanii/chemistry , Phosphates/metabolism , Spectrometry, Mass, Electrospray Ionization
6.
Int J Mol Sci ; 21(23)2020 Nov 25.
Article in English | MEDLINE | ID: mdl-33255655

ABSTRACT

In a wide range of organisms, dolichyl phosphate mannose (DPM) synthase is a complex of tree proteins Dpm1, Dpm2, and Dpm3. However, in the yeast Saccharomyces cerevisiae, it is believed to be a single Dpm1 protein. The function of Dpm3 is performed in S. cerevisiae by the C-terminal transmembrane domain of the catalytic subunit Dpm1. Until present, the regulatory Dpm2 protein has not been found in S. cerevisiae. In this study, we show that, in fact, the Yil102c-A protein interacts directly with Dpm1 in S. cerevisiae and influences its DPM synthase activity. Deletion of the YIL102c-A gene is lethal, and this phenotype is reversed by the dpm2 gene from Trichoderma reesei. Functional analysis of Yil102c-A revealed that it also interacts with glucosylphosphatidylinositol-N-acetylglucosaminyl transferase (GPI-GnT), similar to DPM2 in human cells. Taken together, these results show that Yil102c-A is a functional homolog of DPMII from T. reesei and DPM2 from humans.


Subject(s)
Fungal Proteins/genetics , Mannosyltransferases/genetics , Saccharomyces cerevisiae/genetics , Amino Acid Sequence/genetics , Dolichol Phosphates/metabolism , Fungal Proteins/metabolism , Glycosylation , Humans , Mannose/metabolism , Mannosyltransferases/metabolism , Saccharomyces cerevisiae/metabolism , Sequence Homology, Amino Acid , Trichoderma/genetics
7.
Nature ; 579(7799): 443-447, 2020 03.
Article in English | MEDLINE | ID: mdl-32103179

ABSTRACT

In eukaryotic protein N-glycosylation, a series of glycosyltransferases catalyse the biosynthesis of a dolichylpyrophosphate-linked oligosaccharide before its transfer onto acceptor proteins1. The final seven steps occur in the lumen of the endoplasmic reticulum (ER) and require dolichylphosphate-activated mannose and glucose as donor substrates2. The responsible enzymes-ALG3, ALG9, ALG12, ALG6, ALG8 and ALG10-are glycosyltransferases of the C-superfamily (GT-Cs), which are loosely defined as containing membrane-spanning helices and processing an isoprenoid-linked carbohydrate donor substrate3,4. Here we present the cryo-electron microscopy structure of yeast ALG6 at 3.0 Å resolution, which reveals a previously undescribed transmembrane protein fold. Comparison with reported GT-C structures suggests that GT-C enzymes contain a modular architecture with a conserved module and a variable module, each with distinct functional roles. We used synthetic analogues of dolichylphosphate-linked and dolichylpyrophosphate-linked sugars and enzymatic glycan extension to generate donor and acceptor substrates using purified enzymes of the ALG pathway to recapitulate the activity of ALG6 in vitro. A second cryo-electron microscopy structure of ALG6 bound to an analogue of dolichylphosphate-glucose at 3.9 Å resolution revealed the active site of the enzyme. Functional analysis of ALG6 variants identified a catalytic aspartate residue that probably acts as a general base. This residue is conserved in the GT-C superfamily. Our results define the architecture of ER-luminal GT-C enzymes and provide a structural basis for understanding their catalytic mechanisms.


Subject(s)
Cryoelectron Microscopy , Endoplasmic Reticulum/enzymology , Glycosyltransferases/genetics , Glycosyltransferases/metabolism , Membrane Proteins/genetics , Membrane Proteins/metabolism , Saccharomyces cerevisiae Proteins/genetics , Saccharomyces cerevisiae Proteins/metabolism , Saccharomyces cerevisiae/enzymology , Biocatalysis , Catalytic Domain , Conserved Sequence , Dolichol Monophosphate Mannose/metabolism , Dolichol Phosphates/metabolism , Glucose/analogs & derivatives , Glucose/metabolism , Glycosyltransferases/deficiency , In Vitro Techniques , Lipids , Membrane Proteins/deficiency , Models, Molecular , Mutation , Polyisoprenyl Phosphate Monosaccharides/chemistry , Polyisoprenyl Phosphate Monosaccharides/metabolism , Protein Binding , Saccharomyces cerevisiae/genetics , Substrate Specificity
8.
Ukr Biochem J ; 89(1): 59-70, 2017.
Article in English | MEDLINE | ID: mdl-29236390

ABSTRACT

To verify the idea that extracellular free oligosaccharides might be able to reflect the functional status of the endoplasmic reticulum (ER) and lysosomal-endosomal system, HPLC-profiles of serum-derived free oligosaccharides (FOS) in human healthy aging, acute myeloproliferative neoplasms, and cardiovascular pathologies were compared with intracellular glycans. After plasma deproteinization and FOS purification the oligosaccharides were labelled with anthranilic acid, separated into the neutral and charged with QAE Sephadex (Q25-120) chromatography and analysed using high-performance liquid chromatography (HPLC). The charged FOS were digested with a sialidase and compared with free oligosaccharides from transferrin for structural decoding. HPLC-profiles of serum-derived FOS revealed mild delay of the dolichol phosphate cycle in ER, moderate intensification of ER-associated degradation (ERAD) and degradation in endosomal-lysosomal system with aging; an inhibition of the dolichol phosphate cycle, intensification of ERAD and increasing of lysosomal exocytosis in acute myeloproliferative neoplasms; intensification of ERAD and glycocojugate degradation with endosomal-lysosomal system in cardiovascular diseases. As serum free oligosaccharides are able to reflect specifically perturbations in ER and endosomal-lysosomal system under wide range of stressors they can serve as extracellular markers of functionality of these organelles.


Subject(s)
Cardiovascular Diseases/blood , Dolichol Phosphates/blood , Endoplasmic Reticulum-Associated Degradation , Glycoconjugates/blood , Healthy Aging/blood , Myeloproliferative Disorders/blood , Oligosaccharides/blood , Biomarkers/blood , Biomarkers/chemistry , Carbohydrate Sequence , Cardiovascular Diseases/diagnosis , Case-Control Studies , Endoplasmic Reticulum/metabolism , Endosomes/metabolism , Glycosylation , Humans , Lysosomes/metabolism , Myeloproliferative Disorders/diagnosis , Oligosaccharides/chemistry , Staining and Labeling/methods , ortho-Aminobenzoates/chemistry
9.
DNA Cell Biol ; 36(12): 1142-1150, 2017 Dec.
Article in English | MEDLINE | ID: mdl-29058484

ABSTRACT

Members of the reticulon protein family are predominantly distributed within the endoplasmic reticulum. The neurite outgrowth inhibitor (Nogo) has three subtypes, including Nogo-A (200 kDa), Nogo-B (55 kDa), and Nogo-C (25 kDa). Nogo-A and Nogo-C are potent Nogos that are predominantly expressed in the central nervous system. Nogo-B, the splice variant of reticulon-4, is expressed widely in multiple human organ systems, including the liver, lung, kidney, blood vessels, and inflammatory cells. Moreover, the Nogo-B receptor (NgBR) can interact with Nogo-B and can independently affect nervous system regeneration, the chemotaxis of endothelial cells, proliferation, and apoptosis. In recent years, it has been demonstrated that NgBR plays an important role in human pathophysiological processes, including lipid metabolism, angiogenesis, N-glycosylation, cell apoptosis, chemoresistance in human hepatocellular carcinoma, and epithelial-mesenchymal transition. The pathophysiologic effects of NgBR have garnered increased attention, and the detection and enhancement of NgBR expression may be a novel approach to monitor the development and to improve the prognosis of relevant human clinical diseases.


Subject(s)
Lipid Metabolism , Nogo Proteins/metabolism , Receptors, Cell Surface/metabolism , Animals , Apoptosis , Carrier Proteins/metabolism , Cell Proliferation , Dolichol Phosphates/metabolism , Glycoproteins/metabolism , Glycosylation , Humans , Lipid Metabolism Disorders/metabolism , Neoplasms/metabolism , Neoplasms/pathology , Neovascularization, Physiologic , Niemann-Pick Disease, Type C/metabolism , Nogo Receptors/metabolism , Signal Transduction , Vascular Endothelial Growth Factor A/metabolism , Vesicular Transport Proteins
10.
Bioconjug Chem ; 28(9): 2461-2470, 2017 09 20.
Article in English | MEDLINE | ID: mdl-28809486

ABSTRACT

N-glycosylation, the covalent attachment of glycans to select protein target Asn residues, is a post-translational modification performed by all three domains of life. In the halophilic archaea Haloferax volcanii, in which understanding of this universal protein-processing event is relatively well-advanced, genes encoding the components of the archaeal glycosylation (Agl) pathway responsible for the assembly and attachment of an N-linked pentasaccharide have been identified. As elsewhere, the N-linked glycan is assembled on phosphodolichol carriers before transfer to target Asn residues. However, as little is presently known of the Hfx. volcanii Agl pathway at the protein level, the seemingly unique ability of Archaea to use dolichol phosphate (DolP) as the glycan lipid carrier, rather than dolichol pyrophosphate used by eukaryotes, remains poorly understood. With this in mind, a chemoenzymatic approach was taken to biochemically study AglG, one of the five glycosyltransferases of the pathway. Accordingly, a novel regio- and stereoselective reduction of naturally isolated polyprenol gave facile access to S-dolichol via asymmetric transfer hydrogenation under very mild conditions. This compound was used to generate glucose-charged DolP, a precursor of the N-linked pentasaccharide, as well as DolP-glucose-glucuronic acid and DolP-glucuronic acid. AglG, purified from Hfx. volcanii membranes in hypersaline conditions, like those encountered in situ, was subsequently combined with uridine diphosphate (UDP)-glucuronic acid and DolP-glucose to yield DolP-glucose-glucuronic acid. The in vitro system for the study of AglG activity developed here represents the first such tool for studying halophilic glycosyltransferases and will allow for a detailed understanding of archaeal N-glycosylation.


Subject(s)
Archaeal Proteins/metabolism , Dolichol Phosphates/metabolism , Glycosyltransferases/metabolism , Haloferax volcanii/metabolism , Polysaccharides/metabolism , Glycosylation , Oligosaccharides/metabolism , Protein Processing, Post-Translational
11.
Biochim Biophys Acta Mol Cell Biol Lipids ; 1862(6): 589-599, 2017 Jun.
Article in English | MEDLINE | ID: mdl-28330764

ABSTRACT

N-glycosylation, a post-translational modification whereby glycans are covalently linked to select Asn residues of target proteins, occurs in all three domains of life. Across evolution, the N-linked glycans are initially assembled on phosphorylated cytoplasmically-oriented polyisoprenoids, with polyprenol (mainly C55 undecaprenol) fulfilling this role in Bacteria and dolichol assuming this function in Eukarya and Archaea. The eukaryal and archaeal versions of dolichol can, however, be distinguished on the basis of their length, degree of saturation and by other traits. As is true for many facets of their biology, Archaea, best known in their capacity as extremophiles, present unique approaches for synthesizing phosphodolichols. At the same time, general insight into the assembly and processing of glycan-bearing phosphodolichols has come from studies of the archaeal enzymes responsible. In this review, these and other aspects of archaeal phosphodolichol biology are addressed.


Subject(s)
Archaea/metabolism , Dolichol Phosphates/metabolism , Archaea/genetics , Carbohydrates/genetics , Dolichol Phosphates/genetics , Glycosylation
12.
Eur J Med Chem ; 125: 952-964, 2017 Jan 05.
Article in English | MEDLINE | ID: mdl-27769035

ABSTRACT

Citronellyl- and solanesyl-based dolichol linked oligosaccharide (DLO) analogs were synthesized and tested along with undecaprenyl compounds for their ability to inhibit the release of [3H]OSP from [3H]DLO by mammalian liver DLO diphosphatase activity. Solanesyl (C45) and undecaprenyl (C55) compounds were 50-500 fold more potent than their citronellyl (C10)-based counterparts, indicating that the alkyl chain length is important for activity. The relative potency of the compounds within the citronellyl series was different to that of the solanesyl series with citronellyl diphosphate being 2 and 3 fold more potent than citronellyl-PP-GlcNAc2 and citronellyl-PP-GlcNAc, respectively; whereas solanesyl-PP-GlcNAc and solanesyl-PP-GlcNAc2 were 4 and 8 fold more potent, respectively, than solanesyl diphosphate. Undecaprenyl-PP-GlcNAc and bacterial Lipid II were 8 fold more potent than undecaprenyl diphosphate at inhibiting the DLODP assay. Therefore, at least for the more hydrophobic compounds, diphosphodiesters are more potent inhibitors of the DLODP assay than diphosphomonoesters. These results suggest that DLO rather than dolichyl diphosphate might be a preferred substrate for the DLODP activity.


Subject(s)
Dolichols/chemistry , Oligosaccharides/chemistry , Animals , Dolichol Phosphates , Humans , Liver/enzymology , Monoterpenes , Phosphoric Diester Hydrolases/metabolism , Phosphoric Monoester Hydrolases/metabolism , Polyisoprenyl Phosphate Sugars , Polyisoprenyl Phosphates , Substrate Specificity
13.
Biochim Biophys Acta ; 1861(11): 1705-1718, 2016 Nov.
Article in English | MEDLINE | ID: mdl-27524515

ABSTRACT

The endoplasmic reticulum (ER) has numerous biological functions including protein synthesis, protein folding, and lipid synthesis. The CAX4 gene encodes dolichyl pyrophosphate (Dol-PP) phosphatase, which is involved in protein N-glycosylation. In cax4Δ cells, the N-glycosylation of the vacuolar carboxypeptidase (CPY) was severely affected, and expression of the ER chaperone Kar2p was elevated, which resulted in UPR activation as an adaptive response. The cax4Δ cell growth was reduced, and this could be attributed to the formation of clumped aggregates, high vesiculation of the intracellular membrane, and plasma membrane alterations were depicted using DiOC6 fluorescence. In the cax4 deletion strain, the transcription factors INO2 and INO4 were upregulated, and the negative regulator OPI1 was concomitantly down regulated, which led to the derepression of the phospholipid genes CHO2, OPI3, PSD1, and PSD2 and resulted in increased phospholipid levels. However, the TAG, SE, and LD levels were significantly reduced, and FFA, sterol, and DAG levels were increased. These findings could be attributed to the derepression of the TAG and SE lipases TGL3, TGL4, TGL5, YEH1, and YEH2 and the repression of LRO1, DGA1, ARE1, and ARE2 in cax4Δ cells. Interestingly, the overexpression of SEC59 or CAX4 in cax4Δ cells prevented the ER stress and growth defect, and restored normal level of phospholipids, neutral lipids, and LDs. The current study revealed the disruption of N-glycosylation-induced ER stress, altered lipid homeostasis accounts for pleiotropic phenotype. Thus, CAX4 regulates membrane biogenesis by coordinating lipid homeostasis with protein quality control.


Subject(s)
Dolichol Phosphates/metabolism , Homeostasis , Lipid Metabolism , Pyrophosphatases/metabolism , Saccharomyces cerevisiae Proteins/metabolism , Saccharomyces cerevisiae/enzymology , Blotting, Western , Cathepsin A/metabolism , Cell Membrane/metabolism , Endoplasmic Reticulum Stress , Fluorescence , Gene Expression Regulation, Fungal , Genes, Fungal , Genetic Complementation Test , Glycosylation , Green Fluorescent Proteins/metabolism , Lipid Droplets/metabolism , Lipid Metabolism/genetics , Mutation/genetics , Phenotype , Phospholipids/metabolism , Phosphotransferases (Alcohol Group Acceptor)/metabolism , RNA, Messenger/genetics , RNA, Messenger/metabolism , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/growth & development , Time Factors , Unfolded Protein Response
14.
FEBS Lett ; 590(18): 3168-78, 2016 09.
Article in English | MEDLINE | ID: mdl-27490243

ABSTRACT

N-glycosylation is a post-translational modification that occurs across evolution. In the thermoacidophilic archaea Sulfolobus acidocaldarius, glycoproteins are modified by an N-linked tribranched hexasaccharide reminiscent of the N-glycans assembled in Eukarya. Previously, hexose-bearing dolichol phosphate was detected in a S. acidocaldarius Bligh-Dyer lipid extract. Here, we used a specialized protocol for extracting lipid-linked oligosaccharides to detect a dolichol pyrophosphate bearing the intact hexasaccharide, as well as its biosynthetic intermediates. Furthermore, evidence for N-glycosylation of two S. acidocaldarius proteins by the same hexasaccharide and its derivatives was collected. These findings thus provide novel insight into archaeal N-glycosylation.


Subject(s)
Archaeal Proteins/metabolism , Dolichol Phosphates/metabolism , Protein Processing, Post-Translational , Sulfolobus acidocaldarius/metabolism , Dolichol Phosphates/chemistry , Glycosylation
15.
J Lipid Res ; 57(8): 1477-91, 2016 08.
Article in English | MEDLINE | ID: mdl-27281477

ABSTRACT

We reported an oligosaccharide diphosphodolichol (DLO) diphosphatase (DLODP) that generates dolichyl-phosphate and oligosaccharyl phosphates (OSPs) from DLO in vitro. This enzyme could underlie cytoplasmic OSP generation and promote dolichyl-phosphate recycling from truncated endoplasmic reticulum (ER)-generated DLO intermediates. However, during subcellular fractionation, DLODP distribution is closer to that of a Golgi apparatus (GA) marker than those of ER markers. Here, we examined the effect of brefeldin A (BFA), which fuses the GA with the ER on OSP metabolism. In order to increase the steady state level of truncated DLO while allowing formation of mature DLO (Glc3Man9GlcNAc2-PP-dolichol), dolichyl-P-mannose Man7GlcNAc2-PP-dolichol mannosyltransferase was partially downregulated in HepG2 cells. We show that BFA provokes GA endomannosidase trimming of Glc3Man9GlcNAc2-PP-dolichol to yield a Man8GlcNAc2-PP-dolichol structure that does not give rise to cytoplasmic Man8GlcNAc2-P. BFA also strikingly increased OSP derived from mature DLO within the endomembrane system without affecting levels of Man7GlcNAc2-PP-dolichol or cytoplasmic Man7GlcNAc2-P. The BFA-provoked increase in endomembrane-situated OSP is sensitive to nocodazole, and BFA causes partial redistribution of DLODP activity from GA- to ER-containing regions of density gradients. These findings are consistent with BFA-provoked microtubule-dependent GA-to-ER transport of a previously reported DLODP that acts to generate a novel endomembrane-situated OSP population.


Subject(s)
Brefeldin A/pharmacology , Dolichols/analogs & derivatives , Endoplasmic Reticulum/metabolism , Golgi Apparatus/metabolism , Intracellular Membranes/metabolism , Oligosaccharides/metabolism , Animals , CHO Cells , Cricetulus , Dolichol Phosphates/metabolism , Dolichols/metabolism , Endoplasmic Reticulum/drug effects , Golgi Apparatus/drug effects , Hep G2 Cells , Humans , Phosphates/metabolism
16.
J Lipid Res ; 57(6): 1029-42, 2016 06.
Article in English | MEDLINE | ID: mdl-27037250

ABSTRACT

Oligosaccharyl phosphates (OSPs) are hydrolyzed from oligosaccharide-diphosphodolichol (DLO) during protein N-glycosylation by an uncharacterized process. An OSP-generating activity has been reported in vitro, and here we asked if its biochemical characteristics are compatible with a role in endoplasmic reticulum (ER)-situated DLO regulation. We demonstrate a Co(2+)-dependent DLO diphosphatase (DLODP) activity that splits DLO into dolichyl phosphate and OSP. DLODP has a pH optimum of 5.5 and is inhibited by vanadate but not by NaF. Polyprenyl diphosphates inhibit [(3)H]OSP release from [(3)H]DLO, the length of their alkyl chains correlating positively with inhibition potency. The diphosphodiester GlcNAc2-PP-solanesol is hydrolyzed to yield GlcNAc2-P and inhibits [(3)H]OSP release from [(3)H]DLO more effectively than the diphosphomonoester solanesyl diphosphate. During subcellular fractionation of liver homogenates, DLODP codistributes with microsomal markers, and density gradient centrifugation revealed that the distribution of DLODP is closer to that of Golgi apparatus-situated UDP-galactose glycoprotein galactosyltransferase than those of dolichyl-P-dependent glycosyltransferases required for DLO biosynthesis in the ER. Therefore, a DLODP activity showing selectivity toward lipophilic diphosphodiesters such as DLO, and possessing properties distinct from other lipid phosphatases, is identified. Separate subcellular locations for DLODP action and DLO biosynthesis may be required to prevent uncontrolled DLO destruction.


Subject(s)
Dolichols/metabolism , Oligosaccharides/metabolism , Pyrophosphatases/metabolism , Dolichol Phosphates/chemistry , Dolichol Phosphates/metabolism , Dolichols/chemistry , Endoplasmic Reticulum/chemistry , Endoplasmic Reticulum/metabolism , Glycosylation , Golgi Apparatus/chemistry , Golgi Apparatus/metabolism , Hep G2 Cells , Humans , Liver/chemistry , Liver/metabolism , Oligosaccharides/chemistry , Polyisoprenyl Phosphates/chemistry , Polyisoprenyl Phosphates/metabolism , Pyrophosphatases/chemistry
17.
PLoS One ; 10(6): e0130482, 2015.
Article in English | MEDLINE | ID: mdl-26098850

ABSTRACT

In all three domains of life, N-glycosylation begins with the assembly of glycans on phosphorylated polyisoprenoid carriers. Like eukaryotes, archaea also utilize phosphorylated dolichol for this role, yet whereas the assembled oligosaccharide is transferred to target proteins from dolichol pyrophosphate in eukaryotes, archaeal N-linked glycans characterized to date are derived from a dolichol monophosphate carrier, apart from a single example. In this study, glycan-charged dolichol phosphate from the hyperthermophile Pyrococcus furiosus was identified and structurally characterized. Normal and reverse phase liquid chromatography-electrospray ionization mass spectrometry revealed the existence of dolichol phosphate charged with the heptasaccharide recently described in in vitro studies of N-glycosylation on this species. As with other described archaeal dolichol phosphates, the α- and ω-terminal isoprene subunits of the P. furiosus lipid are saturated, in contrast to eukaryal phosphodolichols that present only a saturated α-position isoprene subunit. Interestingly, an additional 1-4 of the 12-14 isoprene subunits comprising P. furiosus dolichol phosphate are saturated, making this lipid not only the longest archaeal dolichol phosphate described to date but also the most highly saturated.


Subject(s)
Archaea/metabolism , Dolichol Phosphates/metabolism , Dolichols/metabolism , Phosphate Transport Proteins/metabolism , Polysaccharides/metabolism , Pyrococcus furiosus/metabolism , Butadienes/metabolism , Glycosylation , Hemiterpenes/metabolism , Oligosaccharides/metabolism , Pentanes/metabolism
18.
Plant J ; 81(2): 292-303, 2015 Jan.
Article in English | MEDLINE | ID: mdl-25406445

ABSTRACT

Dolichol phosphate (Dol-P) serves as a carrier of complex polysaccharides during protein glycosylation. Dol-P is synthesized by the phosphorylation of dolichol or the monodephosphorylation of dolichol pyrophosphate (Dol-PP); however, the enzymes that catalyze these reactions remain unidentified in Arabidopsis thaliana. We performed a genome-wide search for cytidylyltransferase motif-containing proteins in Arabidopsis, and found that At3g45040 encodes a protein homologous with Sec59p, a dolichol kinase (DOK) in Saccharomyces cerevisiae. At3g45040, designated AtDOK1, complemented defects in the growth and N-linked glycosylation of the S. cerevisiae sec59 mutant, suggesting that AtDOK1 encodes a functional DOK. To characterize the physiological roles of AtDOK1 in planta, we isolated two independent lines of T-DNA-tagged AtDOK1 mutants, dok1-1 and dok1-2. The heterozygous plants showed developmental defects in male and female gametophytes, including an aberrant pollen structure, low pollen viability, and short siliques. Additionally, the mutations had incomplete penetrance. These results suggest that AtDOK1 is a functional DOK required for reproductive processes in Arabidopsis.


Subject(s)
Arabidopsis/enzymology , Phosphotransferases (Alcohol Group Acceptor)/metabolism , Arabidopsis/genetics , Dolichol Phosphates/metabolism , Phosphotransferases (Alcohol Group Acceptor)/genetics , Reproduction/physiology
19.
J Cell Biochem ; 115(4): 754-62, 2014 Apr.
Article in English | MEDLINE | ID: mdl-24243557

ABSTRACT

Deficiency in N-linked protein glycosylation is a long-known characteristic of alcoholic liver disease and congenital disorders of glycosylation. Previous investigations of ethanol-induced glycosylation deficiency demonstrated perturbations in the early steps of substrate synthesis and in the final steps of capping N-linked glycans in the Golgi. The significance of the biosynthesis of N-glycan precursors in the endoplasmic reticulum, however, has not yet been addressed in alcoholic liver disease. Ethanol-metabolizing hepatoma cells were treated with increasing concentrations of ethanol. Transcript analysis of genes involved in the biosynthesis of N-glycans, activity assays of related enzymes, dolichol-phosphate quantification, and analysis of dolichol-linked oligosaccharides were performed. Upon treatment of cells with ethanol, we found a decrease in the final N-glycan precursor Dol-PP-GlcNAc(2) Man(9) Glc(3) and in C95- and C100-dolichol-phosphate levels. Transcript analysis of genes involved in N-glycosylation showed a 17% decrease in expression levels of DPM1, a subunit of the dolichol-phosphate-mannose synthase, and an 8% increase in RPN2, a subunit of the oligosaccharyl transferase. Ethanol treatment decreases the biosynthesis of dolichol-phosphate. Consequently, the formation of N-glycan precursors is affected, resulting in an aberrant precursor assembly. Messenger RNA levels of genes involved in N-glycan biosynthesis are slightly affected by ethanol treatment, indicating that the assembly of N-glycan precursors is not regulated at the transcriptional level. This study confirms that ethanol impairs N-linked glycosylation by affecting dolichol biosynthesis leading to impaired dolichol-linked oligosaccharide assembly. Together our data help to explain the underglycosylation phenotype observed in alcoholic liver disease and congenital disorders of glycosylation.


Subject(s)
Dolichols/biosynthesis , Ethanol/pharmacology , Glycosylation/drug effects , Hepatocytes/drug effects , Hepatocytes/metabolism , Alcohol Dehydrogenase/genetics , Alcohol Dehydrogenase/metabolism , Carbohydrate Conformation , Cells, Cultured , Cytochrome P-450 CYP2E1/genetics , Cytochrome P-450 CYP2E1/metabolism , Dolichol Phosphates/metabolism , Dolichols/metabolism , Gene Expression Regulation/drug effects , Hexosyltransferases , Humans , Inactivation, Metabolic , Mannosyltransferases/metabolism , Oligosaccharides/chemistry , Oligosaccharides/metabolism , Polysaccharides/metabolism , Proteasome Endopeptidase Complex/metabolism , Transferrin/metabolism
20.
Int J Dev Neurosci ; 31(8): 828-35, 2013 Dec.
Article in English | MEDLINE | ID: mdl-24161469

ABSTRACT

It has been commonly recognized that accumulated amyloid-ß (Aß) in the brain plays a crucial role in the pathogenesis of Alzheimer's disease (AD). Since the deficiency of the P-glycoprotein (P-gp) at the blood-brain barrier (BBB) in AD may aggravate Aß deposition and the P-gp reversal agents display lower selectivity of the action, to selectively restore activity of the efflux pump is eagerly required. This study was designed to investigate the influence of dolichyl-phosphate (dolichyl-P) on the P-gp at the BBB. The results revealed that treatment with dolichyl-P increased transendothelial transfer of Rhodamine123 (Rh123) and Aß42 from the apical compartment to the basolateral compartment but reduced that from the basolateral compartment to the apical compartment in the co-culture of rat brain microvessel endothelial cells (rBMECs) and astrocytes, down regulated P-gp expression in rBMECs and significantly elevated content of Rh123 in rat cortex and hippocampus tissues. The present results implied that accumulated dolichyl-P in the brain may exert an important role in the depression of the P-gp at the BBB, which may suggest valuable clues to promote function of the pump at the BBB in AD.


Subject(s)
ATP Binding Cassette Transporter, Subfamily B, Member 1/metabolism , Blood-Brain Barrier/drug effects , Blood-Brain Barrier/metabolism , Dolichol Phosphates/pharmacology , Amyloid beta-Peptides/pharmacology , Analysis of Variance , Animals , Astrocytes/drug effects , Astrocytes/physiology , Blood-Brain Barrier/cytology , Cell Survival , Cells, Cultured , Cerebral Cortex/cytology , Chromatography, High Pressure Liquid , Claudin-5/metabolism , Coculture Techniques , Electric Impedance , Endothelial Cells/drug effects , Endothelial Cells/metabolism , Glial Fibrillary Acidic Protein/metabolism , Male , Peptide Fragments/pharmacology , Rats , Rats, Wistar
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