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1.
J Lipid Res ; 57(8): 1477-91, 2016 08.
Article in English | MEDLINE | ID: mdl-27281477

ABSTRACT

We reported an oligosaccharide diphosphodolichol (DLO) diphosphatase (DLODP) that generates dolichyl-phosphate and oligosaccharyl phosphates (OSPs) from DLO in vitro. This enzyme could underlie cytoplasmic OSP generation and promote dolichyl-phosphate recycling from truncated endoplasmic reticulum (ER)-generated DLO intermediates. However, during subcellular fractionation, DLODP distribution is closer to that of a Golgi apparatus (GA) marker than those of ER markers. Here, we examined the effect of brefeldin A (BFA), which fuses the GA with the ER on OSP metabolism. In order to increase the steady state level of truncated DLO while allowing formation of mature DLO (Glc3Man9GlcNAc2-PP-dolichol), dolichyl-P-mannose Man7GlcNAc2-PP-dolichol mannosyltransferase was partially downregulated in HepG2 cells. We show that BFA provokes GA endomannosidase trimming of Glc3Man9GlcNAc2-PP-dolichol to yield a Man8GlcNAc2-PP-dolichol structure that does not give rise to cytoplasmic Man8GlcNAc2-P. BFA also strikingly increased OSP derived from mature DLO within the endomembrane system without affecting levels of Man7GlcNAc2-PP-dolichol or cytoplasmic Man7GlcNAc2-P. The BFA-provoked increase in endomembrane-situated OSP is sensitive to nocodazole, and BFA causes partial redistribution of DLODP activity from GA- to ER-containing regions of density gradients. These findings are consistent with BFA-provoked microtubule-dependent GA-to-ER transport of a previously reported DLODP that acts to generate a novel endomembrane-situated OSP population.


Subject(s)
Brefeldin A/pharmacology , Dolichols/analogs & derivatives , Endoplasmic Reticulum/metabolism , Golgi Apparatus/metabolism , Intracellular Membranes/metabolism , Oligosaccharides/metabolism , Animals , CHO Cells , Cricetulus , Dolichol Phosphates/metabolism , Dolichols/metabolism , Endoplasmic Reticulum/drug effects , Golgi Apparatus/drug effects , Hep G2 Cells , Humans , Phosphates/metabolism
2.
Orphanet J Rare Dis ; 11(1): 84, 2016 06 24.
Article in English | MEDLINE | ID: mdl-27343064

ABSTRACT

BACKGROUND: Type I congenital disorders of glycosylation (CDG-I) are mostly complex multisystemic diseases associated with hypoglycosylated serum glycoproteins. A subgroup harbour mutations in genes necessary for the biosynthesis of the dolichol-linked oligosaccharide (DLO) precursor that is essential for protein N-glycosylation. Here, our objective was to identify the molecular origins of disease in such a CDG-Ix patient presenting with axial hypotonia, peripheral hypertonia, enlarged liver, micropenis, cryptorchidism and sensorineural deafness associated with hypo glycosylated serum glycoproteins. RESULTS: Targeted sequencing of DNA revealed a splice site mutation in intron 5 and a non-sense mutation in exon 4 of the dehydrodolichol diphosphate synthase gene (DHDDS). Skin biopsy fibroblasts derived from the patient revealed ~20 % residual DHDDS mRNA, ~35 % residual DHDDS activity, reduced dolichol-phosphate, truncated DLO and N-glycans, and an increased ratio of [2-(3)H]mannose labeled glycoprotein to [2-(3)H]mannose labeled DLO. Predicted truncated DHDDS transcripts did not complement rer2-deficient yeast. SiRNA-mediated down-regulation of DHDDS in human hepatocellular carcinoma HepG2 cells largely mirrored the biochemical phenotype of cells from the patient. The patient also harboured the homozygous ALG6(F304S) variant, which does not cause CDG but has been reported to be more frequent in PMM2-CDG patients with severe/fatal disease than in those with moderate presentations. WES did not reveal other strong candidate causal genes. CONCLUSIONS: We describe a patient presenting with severe multisystem disease associated with DHDDS deficiency. As retinitis pigmentosa is the only clinical sign in previously reported cases, this report broadens the spectrum of phenotypes associated with this condition.


Subject(s)
Alkyl and Aryl Transferases/metabolism , Congenital Disorders of Glycosylation/enzymology , Chromatography, Thin Layer , Congenital Disorders of Glycosylation/blood , Congenital Disorders of Glycosylation/metabolism , Dolichols/analogs & derivatives , Dolichols/metabolism , Exons/genetics , Glycoproteins/blood , Glycoproteins/chemistry , Glycoproteins/metabolism , Glycosylation , Hep G2 Cells , Humans , Infant, Newborn , Male , Mutation , Oligosaccharides/metabolism , Polysaccharides/metabolism , RNA, Small Interfering/genetics , Skin/metabolism
3.
Biochem Biophys Res Commun ; 453(2): 277-81, 2014 Oct 17.
Article in English | MEDLINE | ID: mdl-24866245

ABSTRACT

Polyisoprenoid alcohols from the livers of temperate sea fish (skipjack tuna, chub mackerel, red sea bream and rainbow trout) were analyzed by using 2D-TLC, electrospray ionization (ESI) mass spectrometry and NMR methods. Dolichols (Dols) were detected in all the fish livers, and they were composed of 19-22 isoprene units with Dol-20 as the predominant prenolog. In addition, Dol-like family compounds were found by using 2D-TLC on skipjack tuna samples. These compounds were found to have a larger molecular mass than the Dol family by 16 mass units. NMR analysis indicated that the Dol-like compounds were consistent with the terminal epoxide structure of Dols (the ω-oxirane derivatives of Dols). ESI analysis also revealed the occurrence of dehydro molecules in both Dols and epoxy Dols (Dol-like) fractions. The occurrence of epoxy Dols in fish is discussed in context with the biosynthesis of Dols, which is responsible for forming Dol phosphate, which lead to Dol-PP-oligosaccharide.


Subject(s)
Dolichols/analogs & derivatives , Liver/metabolism , Tuna/metabolism , Animals , Chromatography, Thin Layer , Dolichols/biosynthesis , Dolichols/chemistry , Epoxy Compounds/chemistry , Epoxy Compounds/metabolism , Magnetic Resonance Spectroscopy , Male , Metabolic Networks and Pathways , Oncorhynchus mykiss/metabolism , Perciformes/metabolism , Sea Bream/metabolism , Spectrometry, Mass, Electrospray Ionization
4.
J Am Chem Soc ; 136(2): 566-9, 2014 Jan 15.
Article in English | MEDLINE | ID: mdl-24377322

ABSTRACT

The lipid carrier specificity of the protein N-glycosylation enzyme C. jejuni PglB was tested using a logical, synthetic array of natural and unnatural C10, C20, C30, and C40 polyisoprenol sugar pyrophosphates, including those bearing repeating cis-prenyl units. Unusual, short, synthetically accessible C20 prenols (nerylnerol 1d and geranylnerol 1e) were shown to be effective lipid carriers for PglB sugar substrates. Kinetic analyses for PglB revealed clear K(M)-only modulation with lipid chain length, thereby implicating successful in vitro application at appropriate concentrations. This was confirmed by optimized, efficient in vitro synthesis allowing >90% of Asn-linked ß-N-GlcNAc-ylated peptide and proteins. This reveals a simple, flexible biocatalytic method for glycoconjugate synthesis using PglB N-glycosylation machinery and varied chemically synthesized glycosylation donor precursors.


Subject(s)
Campylobacter jejuni/enzymology , Dolichols/metabolism , Glycoconjugates/biosynthesis , Hexosyltransferases/metabolism , Membrane Proteins/metabolism , Peptides/metabolism , Protein Engineering , Bacterial Proteins/chemistry , Bacterial Proteins/metabolism , Biocatalysis , Dolichols/analogs & derivatives , Dolichols/chemistry , Glycoconjugates/chemistry , Glycoconjugates/metabolism , Glycosylation , Hexosyltransferases/chemistry , Kinetics , Membrane Proteins/chemistry , Models, Molecular , Peptides/chemistry , Substrate Specificity
5.
Curr Drug Targets ; 15(4): 374-409, 2014 Apr.
Article in English | MEDLINE | ID: mdl-23848395

ABSTRACT

Because of mutation and natural selection, development of drug resistance to the existing antimalarial is the major problem in malaria treatment. This problem has created an urgent need of novel antimalarial drug targets as well as lead compounds. The important characteristic of malaria is that it shows the phenomenon of balanced polymorphisms. Several traits have been selected in response to disease pressure. Therefore such factors must be explored to understand the pathogenesis of malaria infection in human host. Apicoplast, hub of metabolism is present in Plasmodium falciparum (causative agent of falciparum malaria) having similarities with plant plastid. Among several pathways in apicoplast, Dolichol metabolic pathway is one of the most important pathway and has been known to play role in parasite survival in the human host. In P.falciparum, a phosphorylated derivative of Dolichol participates in biosynthesis of glycoproteins. Several proteins of this pathway play role in post translational modifications of proteins involved in the signal transduction pathways, regulation of DNA replication and cell cycle. This pathway can be used as antimalarial drug target. This report has explored progress towards the study of proteins and inhibitors of Dolichol metabolic pathway. For more comprehensive analysis, the host genetic factors and drug-protein interaction have been covered.


Subject(s)
Antimalarials/pharmacology , Apicoplasts/metabolism , Dolichols/analogs & derivatives , Malaria, Falciparum/drug therapy , Plasmodium falciparum/metabolism , Protozoan Proteins/genetics , Cell Cycle/drug effects , DNA Replication/drug effects , Dolichols/genetics , Dolichols/metabolism , Drug Design , Genes, Protozoan , Genetic Variation , Humans , Malaria, Falciparum/metabolism , Malaria, Falciparum/pathology , Phosphorylation , Plasmodium falciparum/drug effects , Plasmodium falciparum/pathogenicity , Polymorphism, Single Nucleotide , Protozoan Proteins/chemistry , Protozoan Proteins/metabolism , Signal Transduction/drug effects
6.
Glycobiology ; 22(3): 389-99, 2012 Mar.
Article in English | MEDLINE | ID: mdl-22038479

ABSTRACT

Oligomannosidic (OM) N-glycans occur as a mixture of isomers, which at early stages of glycosidase trimming also comprise structures with one to three glucose residues. A complementary set of isomers is generated during the biosynthesis of the lipid-linked precursor. Here, we demonstrate the remarkable capacity of liquid chromatography (LC) with porous graphitic carbon and mass spectrometric detection for the determination of OM isomers. Protein-linked N-glycans were released enzymatically from samples with known isomer composition such as kidney bean proteins and ribonuclease B. Lipid-linked oligosaccharides were obtained by a direct mild acid hydrolysis of microsomes thus avoiding biphasic partitioning. A parallel analysis of pyridylaminated glycans by amide-silica and reversed-phase high-performance LC, the application of branch-specific α-mannosidases and work with ALG mutant plants led to the assignment of the relative retention times of the isomers occurring during the degradation of the Glc(3)Man(9)GlcNAc(2) precursor oligosaccharide to Man(5)GlcNAc(2) and beyond. A tightly woven net of evidence supports these assignments. Noteworthy, this isomer assignment happens in the course of a comprehensive analysis of all types of a sample's N-glycans.


Subject(s)
Dolichols/analogs & derivatives , Membrane Glycoproteins/chemistry , Oligosaccharides/chemistry , Arabidopsis , Arabidopsis Proteins/chemistry , Carbohydrate Conformation , Carbohydrate Sequence , Cells, Cultured , Chromatography, Liquid/methods , Dolichols/chemistry , Fungal Proteins/chemistry , Graphite/chemistry , Humans , Mannosidases/chemistry , Membrane Glycoproteins/metabolism , Molecular Sequence Data , Oligosaccharides/isolation & purification , Oligosaccharides/metabolism , Phaseolus , Pichia , Plant Leaves/chemistry , Porosity , Primary Cell Culture , Spectrometry, Mass, Electrospray Ionization , Terminology as Topic
7.
Am J Hum Genet ; 88(2): 201-6, 2011 Feb 11.
Article in English | MEDLINE | ID: mdl-21295283

ABSTRACT

Increasingly, mutations in genes causing Mendelian disease will be supported by individual and small families only; however, exome sequencing studies have thus far focused on syndromic phenotypes characterized by low locus heterogeneity. In contrast, retinitis pigmentosa (RP) is caused by >50 known genes, which still explain only half of the clinical cases. In a single, one-generation, nonsyndromic RP family, we have identified a gene, dehydrodolichol diphosphate synthase (DHDDS), demonstrating the power of combining whole-exome sequencing with rapid in vivo studies. DHDDS is a highly conserved essential enzyme for dolichol synthesis, permitting global N-linked glycosylation. Zebrafish studies showed virtually identical photoreceptor defects as observed with N-linked glycosylation-interfering mutations in the light-sensing protein rhodopsin. The identified Lys42Glu variant likely arose from an ancestral founder, because eight of the nine identified alleles in 27,174 control chromosomes were of confirmed Ashkenazi Jewish ethnicity. These findings demonstrate the power of exome sequencing linked to functional studies when faced with challenging study designs and, importantly, link RP to the pathways of N-linked glycosylation, which promise new avenues for therapeutic interventions.


Subject(s)
Alkyl and Aryl Transferases/genetics , Exons/genetics , Genetic Variation/genetics , Mutation/genetics , Retinitis Pigmentosa/genetics , Rhodopsin/genetics , Animals , Dolichols/analogs & derivatives , Dolichols/metabolism , Female , Genes, Dominant , Glycosylation , Humans , Male , Pedigree , Phenotype , Polymerase Chain Reaction , Sequence Analysis, DNA , Zebrafish/genetics , Zebrafish/growth & development , Zebrafish Proteins/antagonists & inhibitors , Zebrafish Proteins/genetics , Zebrafish Proteins/metabolism
8.
Glycobiology ; 19(8): 910-7, 2009 Aug.
Article in English | MEDLINE | ID: mdl-19451548

ABSTRACT

We describe an ALG9-defective (congenital disorders of glycosylation type IL) patient who is homozygous for the p.Y286C (c.860A>G) mutation. This patient presented with psychomotor retardation, axial hypotonia, epilepsy, failure to thrive, inverted nipples, hepatomegaly, and pericardial effusion. Due to the ALG9 deficiency, the cells of this patient accumulated the lipid-linked oligosaccharides Man(6)GlcNAc(2)-PP-dolichol and Man(8)GlcNAc(2)-PP-dolichol. It is known that the oligosaccharide structure has a profound effect on protein glycosylation. Therefore, we investigated the influence of these truncated oligosaccharide structures on the protein transfer efficiency, the quality control of newly synthesized glycoproteins, and the eventual degradation of the truncated glycoproteins formed in this patient. We demonstrated that lipid-linked Man(6)GlcNAc(2) and Man(8)GlcNAc(2) are transferred onto proteins with the same efficiency. In addition, glycoproteins bearing these Man(6)GlcNAc(2) and Man(8)GlcNAc(2) structures efficiently entered in the glucosylation/deglucosylation cycle of the quality control system to assist in protein folding. We also showed that in comparison with control cells, patient's cells degraded misfolded glycoproteins at an increasing rate. The Man(8)GlcNAc(2) isomer C on the patient's glycoproteins was found to promote the degradation of misfolded glycoproteins.


Subject(s)
Carbohydrate Metabolism, Inborn Errors/metabolism , Dolichols/analogs & derivatives , Glycoproteins/metabolism , Mannans/metabolism , Mannosyltransferases/genetics , Membrane Proteins/genetics , Carbohydrate Metabolism, Inborn Errors/genetics , Dolichols/metabolism , Female , Glycosylation , Humans , Infant , Protein Folding
9.
J Biol Chem ; 284(18): 11900-12, 2009 May 01.
Article in English | MEDLINE | ID: mdl-19282279

ABSTRACT

N-Linked glycosylation involves the ordered, stepwise synthesis of the unique lipid-linked oligosaccharide precursor Glc(3)Man(9) GlcNAc(2)-PP-Dol on the endoplasmic reticulum (ER), catalyzed by a series of glycosyltransferases. Here we characterize Alg2 as a bifunctional enzyme that is required for both the transfer of the alpha1,3- and the alpha1,6-mannose-linked residue from GDP-mannose to Man(1)GlcNAc(2)-PP-Dol forming the Man(3)GlcNAc(2)-PP-Dol intermediate on the cytosolic side of the ER. Alg2 has a calculated mass of 58 kDa and is predicted to contain four transmembrane-spanning helices, two at the N terminus and two at the C terminus. Contradictory to topology predictions, we prove that only the two N-terminal domains fulfill this criterion, whereas the C-terminal hydrophobic sequences contribute to ER localization in a nontransmembrane manner. Surprisingly, none of the four domains is essential for transferase activity because truncated Alg2 variants can exert their function as long as Alg2 is associated with the ER by either its N- or C-terminal hydrophobic regions. By site-directed mutagenesis we demonstrate that an EX(7)E motif, conserved in a variety of glycosyltransferases, is not important for Alg2 function in vivo and in vitro. Instead, we identify a conserved lysine residue, Lys(230), as being essential for activity, which could be involved in the binding of the phosphate of the glycosyl donor.


Subject(s)
Cell Membrane/enzymology , Mannosyltransferases/metabolism , Membrane Lipids/metabolism , Membrane Proteins/metabolism , Oligosaccharides/biosynthesis , Saccharomyces cerevisiae Proteins/metabolism , Saccharomyces cerevisiae/enzymology , Amino Acid Motifs/physiology , Cell Membrane/genetics , Cytosol/metabolism , Dolichols/analogs & derivatives , Dolichols/genetics , Dolichols/metabolism , Endoplasmic Reticulum/enzymology , Endoplasmic Reticulum/metabolism , Glycosylation , Guanosine Diphosphate Mannose/genetics , Guanosine Diphosphate Mannose/metabolism , Hydrophobic and Hydrophilic Interactions , Mannosyltransferases/genetics , Membrane Lipids/genetics , Membrane Proteins/genetics , Mutagenesis, Site-Directed/methods , Oligosaccharides/genetics , Oligosaccharides/metabolism , Protein Binding/physiology , Protein Structure, Tertiary , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae Proteins/genetics
10.
Nature ; 454(7204): E3-4; discussion E4-5, 2008 Jul 31.
Article in English | MEDLINE | ID: mdl-18668045

ABSTRACT

Protein N-glycosylation requires flipping of the glycolipid Man(5)GlcNAc(2)-diphosphate dolichol (Man(5)GlcNAc(2)-PP-Dol) across the endoplasmic reticulum (ER). Helenius et al. report genetic evidence suggesting that Rft1, an essential ER membrane protein in yeast, is required directly to translocate Man(5)GlcNAc(2)-PP-Dol. We now show that a specific ER protein(s), but not Rft1, is required to flip Man(5)GlcNAc(2)-PP-Dol in reconstituted vesicles. Rft1 may have a critical accessory role in translocating Man(5)GlcNAc(2)-PP-Dol in vivo, but the Man(5)GlcNAc(2)-PP-Dol flippase itself remains to be identified.


Subject(s)
Dolichols/analogs & derivatives , Mannans/metabolism , Membrane Glycoproteins/metabolism , Phospholipid Transfer Proteins/metabolism , Saccharomyces cerevisiae Proteins/metabolism , Saccharomyces cerevisiae/metabolism , Dolichols/metabolism , Membrane Transport Proteins , Reproducibility of Results , Saccharomyces cerevisiae/cytology
11.
Biochemistry ; 46(50): 14342-8, 2007 Dec 18.
Article in English | MEDLINE | ID: mdl-18034500

ABSTRACT

Campylobacter jejuni contains a general N-linked glycosylation pathway in which a heptasaccharide is sequentially assembled onto a polyisoprenyl diphosphate carrier and subsequently transferred to the asparagine side chain of an acceptor protein. The enzymes in the pathway function at a membrane interface and have in common amphiphilic membrane-bound polyisoprenyl-linked substrates. Herein, we examine the potential role of the polyisoprene component of the substrates by investigating the relative substrate efficiencies of polyisoprene-modified analogues in individual steps of the pathway. Chemically defined substrates for PglC, PglJ, and PglB are prepared via semisynthetic approaches. The substrates included polyisoprenols of varying length, double bond geometry, and degree of saturation for probing the role of the hydrophobic polyisoprene in substrate specificity. Kinetic analysis reveals that all three enzymes exhibit distinct preferences for the polyisoprenyl carrier whereby cis-double bond geometry and alpha-unsaturation of the native substrate are important features, while the precise polyisoprene length may be less critical. These findings suggest that the polyisoprenyl carrier plays a specific role in the function of these enzymes beyond a purely physical role as a membrane anchor. These studies underscore the potential of the C. jejuni N-linked glycosylation pathway as a system for investigating the biochemical and biophysical roles of polyisoprenyl carriers common to prokaryotic and eukaryotic glycosylation.


Subject(s)
Bacterial Proteins/metabolism , Campylobacter jejuni/metabolism , Dolichols/metabolism , Glycosyltransferases/metabolism , Signal Transduction , Carbohydrate Sequence , Dolichols/analogs & derivatives , Glycosylation , Models, Biological , Molecular Sequence Data , Molecular Structure , Polysaccharides/metabolism , Substrate Specificity
12.
J Cell Biol ; 177(1): 29-37, 2007 Apr 09.
Article in English | MEDLINE | ID: mdl-17403929

ABSTRACT

The dolichol-linked oligosaccharide Glc3Man9GlcNAc2-PP-Dol is the in vivo donor substrate synthesized by most eukaryotes for asparagine-linked glycosylation. However, many protist organisms assemble dolichol-linked oligosaccharides that lack glucose residues. We have compared donor substrate utilization by the oligosaccharyltransferase (OST) from Trypanosoma cruzi, Entamoeba histolytica, Trichomonas vaginalis, Cryptococcus neoformans, and Saccharomyces cerevisiae using structurally homogeneous dolichol-linked oligosaccharides as well as a heterogeneous dolichol-linked oligosaccharide library. Our results demonstrate that the OST from diverse organisms utilizes the in vivo oligo saccharide donor in preference to certain larger and/or smaller oligosaccharide donors. Steady-state enzyme kinetic experiments reveal that the binding affinity of the tripeptide acceptor for the protist OST complex is influenced by the structure of the oligosaccharide donor. This rudimentary donor substrate selection mechanism has been refined in fungi and vertebrate organisms by the addition of a second, regulatory dolichol-linked oligosaccharide binding site, the presence of which correlates with acquisition of the SWP1/ribophorin II subunit of the OST complex.


Subject(s)
Dolichols/analogs & derivatives , Fungal Proteins/metabolism , Hexosyltransferases/metabolism , Membrane Proteins/metabolism , Oligosaccharides/metabolism , Protozoan Proteins/metabolism , Animals , Binding Sites , Cryptococcus neoformans/enzymology , Dolichols/metabolism , Entamoeba histolytica/enzymology , Kinetics , Mannose/metabolism , Saccharomyces cerevisiae/enzymology , Substrate Specificity , Trichomonas vaginalis/enzymology , Trypanosoma cruzi/enzymology
14.
Curr Protein Pept Sci ; 6(5): 399-411, 2005 Oct.
Article in English | MEDLINE | ID: mdl-16248792

ABSTRACT

The glycosyl carrier lipids, dolichylphosphate (C(95)-P) and undecapreylphosphate (C(55)-P) are key molecular players in the synthesis and translocation of complex glycoconjugates across cell membranes. The molecular mechanism of how these processes occur remains a mystery. Failure to completely catalyze C(95)-P-mediated N-linked protein glycosylation is lethal, as are defects in the C(55)-P-mediated synthesis of bacterial cell surface polymers. Our recent NMR studies have sought to understand the role these "super-lipids" play in biosynthetic and translocation pathways, which are of critical importance to problems in human biology and molecular medicine. The PIs can alter membrane structure by inducing in the lamellar phospholipids (PL) bilayer a non-lamellar or hexagonal (Hex(II)) structure. Membrane proteins that bind PIs contain a transmembrane binding motif, designated a PI recognition sequence (PIRS). Herein we review our recent combination of (1)H- and (31)P NMR spectroscopy and energy minimized molecular modeling studies that have determined the preferred orientation of PIs in model phospholipids membranes. They also show that the addition of a PIRS peptide to nonlamellar membranes induced by the PIs can reverse the Hex(II) phase back to a lamellar structure. Our molecular modeling calculations have also shown that as many as five PIRS peptides can bind to a single PI molecule. These findings lead to the hypothesis that the PI-induced Hex(II) structure may have the potential of forming a membrane channel that could facilitate glycoconjugate translocation processes. This is an alternate hypothesis to the possible existence of hypothetical "flippases" to accomplish movement of hydrophilic sugar chains across hydrophobic membranes.


Subject(s)
Cell Membrane/chemistry , Dolichols/analogs & derivatives , Dolichols/chemistry , Magnetic Resonance Spectroscopy/methods , Peptides/chemistry , Phospholipids/chemistry , Humans , Models, Molecular
15.
J Biol Chem ; 275(6): 4267-77, 2000 Feb 11.
Article in English | MEDLINE | ID: mdl-10660594

ABSTRACT

N-Glycans in nearly all eukaryotes are derived by transfer of a precursor Glc(3)Man(9)GlcNAc(2) from dolichol (Dol) to consensus Asn residues in nascent proteins in the endoplasmic reticulum. The Saccharomyces cerevisiae alg (asparagine-linked glycosylation) mutants fail to synthesize oligosaccharide-lipid properly, and the alg9 mutant, accumulates Man(6)GlcNAc(2)-PP-Dol. High-field (1)H NMR and methylation analyses of Man(6)GlcNAc(2) released with peptide-N-glycosidase F from invertase secreted by Deltaalg9 yeast showed its structure to be Manalpha1,2Manalpha1,2Manalpha1, 3(Manalpha1,3Manalpha1,6)-Manbeta1,4GlcNAcbeta1, 4GlcNAcalpha/beta, confirming the addition of the alpha1,3-linked Man to Man(5)GlcNAc(2)-PP-Dol prior to the addition of the final upper-arm alpha1,6-linked Man. This Man(6)GlcNAc(2) is the endoglycosidase H-sensitive product of the Alg3p step. The Deltaalg9 Hex(7-10)GlcNAc(2) elongation intermediates were released from invertase and similarly analyzed. When compared with alg3 sec18 and wild-type core mannans, Deltaalg9 N-glycans reveal a regulatory role for the Alg3p-dependent alpha1,3-linked Man in subsequent oligosaccharide-lipid and glycoprotein glycan maturation. The presence of this Man appears to provide structural information potentiating the downstream action of the endoplasmic reticulum glucosyltransferases Alg6p, Alg8p and Alg10p, glucosidases Gls1p and Gls2p, and the Golgi Och1p outerchain alpha1,6-Man branch-initiating mannosyltransferase.


Subject(s)
Dolichols/analogs & derivatives , Fungal Proteins/metabolism , Mannans/metabolism , Mannosyltransferases , Membrane Proteins/metabolism , Polyisoprenyl Phosphate Oligosaccharides/metabolism , Polysaccharides/genetics , Saccharomyces cerevisiae Proteins , Saccharomyces cerevisiae/metabolism , Amidohydrolases/metabolism , Carbohydrate Conformation , Carbohydrate Sequence , Chromatography, High Pressure Liquid , Dolichols/metabolism , Endoplasmic Reticulum/enzymology , Glycoproteins/chemistry , Glycoside Hydrolases/chemistry , Glycoside Hydrolases/metabolism , Glycosyltransferases/metabolism , Lipopolysaccharides , Magnetic Resonance Spectroscopy , Mannans/chemistry , Mannosides/chemistry , Molecular Sequence Data , Peptide-N4-(N-acetyl-beta-glucosaminyl) Asparagine Amidase , Saccharomyces cerevisiae/genetics , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , beta-Fructofuranosidase
16.
J Biol Chem ; 274(48): 34072-82, 1999 Nov 26.
Article in English | MEDLINE | ID: mdl-10567375

ABSTRACT

The assembly of the core oligosaccharide region of asparagine-linked glycoproteins proceeds by means of the dolichol pathway. The first step of this pathway, the reaction of dolichol phosphate with UDP-GlcNAc to form N-acetylglucosaminylpyrophosphoryldolichol (GlcNAc-P-P-dolichol), is under investigation as a possible site of metabolic regulation. This report describes feedback inhibition of this reaction by the second intermediate of the pathway, N-acetylglucosaminyl-N-acetylglucosaminylpyrophosphoryldolichol (GlcNAc-GlcNAc-P-P-dolichol), and product inhibition by GlcNAc-P-P-dolichol itself. These influences were revealed when the reactions were carried out in the presence of showdomycin, a nucleoside antibiotic, present at concentrations that block the de novo formation of GlcNAc-GlcNAc-P-P-dolichol but not that of GlcNAc-P-P-dolichol. The apparent K(i) values for GlcNAc-P-P-dolichol and GlcNAc-GlcNAc-P-P-dolichol under basal conditions were 4.4 and 2.8 microM, respectively. Inhibition was also observed under conditions where mannosyl-P-dolichol (Man-P-dol) stimulated the biosynthesis of GlcNAc-P-P-dolichol; the apparent K(i) values for GlcNAc-P-P-dolichol and GlcNAc-GlcNAc-P-P-dolichol were 2.2 and 11 microM, respectively. Kinetic analysis of the types of inhibition indicated competitive inhibition by GlcNAc-P-P-dolichol toward the substrate UDP-GlcNAc and non-competitive inhibition toward dolichol phosphate. Inhibition by GlcNAc-GlcNAc-P-P-dolichol was uncompetitive toward UDP-GlcNAc and competitive toward dolichol phosphate. A model is presented for the kinetic mechanism of the synthesis of GlcNAc-P-P-dolichol. GlcNAc-P-P-dolichol also exerts a stimulatory effect on the biosynthesis of Man-P-dol, i.e. a reciprocal relationship to that previously observed between these two intermediates of the dolichol pathway. This network of inhibitory and stimulatory influences may be aspects of metabolic control of the pathway and thus of glycoprotein biosynthesis in general.


Subject(s)
Polyisoprenyl Phosphate Monosaccharides/antagonists & inhibitors , Polyisoprenyl Phosphate Monosaccharides/metabolism , Acetylglucosamine/biosynthesis , Acids/pharmacology , Animals , Chick Embryo , Dolichol Phosphates/antagonists & inhibitors , Dolichol Phosphates/metabolism , Dolichols/analogs & derivatives , Dolichols/biosynthesis , Hydrolysis/drug effects , Kinetics , Lipids/biosynthesis , Microsomes/drug effects , Microsomes/metabolism , Polyisoprenyl Phosphate Monosaccharides/chemistry , Polyisoprenyl Phosphate Oligosaccharides/antagonists & inhibitors , Polyisoprenyl Phosphate Oligosaccharides/chemistry , Polyisoprenyl Phosphate Oligosaccharides/metabolism , Retina/drug effects , Retina/embryology , Retina/metabolism , Showdomycin/pharmacology , Transferases (Other Substituted Phosphate Groups)/metabolism , Tritium , Uridine Diphosphate N-Acetylglucosamine/antagonists & inhibitors , Uridine Diphosphate N-Acetylglucosamine/metabolism , Uridine Monophosphate/metabolism
17.
Pediatr Res ; 46(3): 345-50, 1999 Sep.
Article in English | MEDLINE | ID: mdl-10473053

ABSTRACT

Fibroblasts were cultured to determine the involvement of peroxisomes in cholesterol and dolichol synthesis. For this purpose, the behavior of cells from patients with Zellweger syndrome, with X-linked adrenoleukodystrophy, and from nondiseased control subjects was studied. Cells both after pretreatment with mevinolin and without pretreatment were incubated in a medium containing [3H]-mevalonate. In fibroblasts from patients with peroxisomal defects, the cholesterol content and mevalonate incorporation into cholesterol were decreased by 10-20% in comparison with control cells. Mevinolin pretreatment decreased the incorporation rate of [3H]-mevalonate into cholesterol but increased the labeling of ubiquinone and dolichol both in diseased and control cells. Squalene synthase activity was unchanged, whereas the activity of farnesyl-pyrophosphate synthase was increased in the diseased states. The results show that in patients with peroxisomal deficiency neither the amount nor the rate of synthesis of cholesterol and dolichol is reduced to any greater extent.


Subject(s)
Adrenoleukodystrophy/metabolism , Dolichols/analogs & derivatives , Fibroblasts/metabolism , Lipid Metabolism , Mevalonic Acid/metabolism , Zellweger Syndrome/metabolism , Adrenoleukodystrophy/genetics , Cells, Cultured , Cholesterol/biosynthesis , Dolichols/biosynthesis , Genetic Linkage , Humans , Infant , Tritium , X Chromosome
18.
Biochem J ; 341 ( Pt 3): 629-37, 1999 Aug 01.
Article in English | MEDLINE | ID: mdl-10417326

ABSTRACT

N-glycosylation of proteins is required for the intra-erythrocytic schizogony of Plasmodium falciparum. In eukaryotic cells, this process involves the transfer of oligosaccharides from a dolichyl pyrophosphate derivative to asparagine residues. We have identified dolichol, dolichyl phosphate and dolichyl pyrophosphate species of 11 and 12 isoprenoid residues by metabolic labelling with [(3)H]farnesyl pyrophosphate, [(3)H]geranylgeranyl pyrophosphate and [(14)C]acetate in the different intra-erythrocytic stages of P. falciparum. This is the first demonstration of short-chain dolichols in the phylum Apicomplexa. The results demonstrate the presence of an active isoprenoid pathway in the intra-erythrocytic stages of P. falciparum. Parasites treated with mevastatin, a 3-hydroxy-3-methylglutaryl-CoA reductase inhibitor, show depressed biosynthesis of dolichol, dolichyl phosphate and isoprenoid pyrophosphate. This effect is observed in all intra-erythrocytic stages of the parasite life cycle, but is most pronounced in the ring stage. N-linked glycosylation of proteins was inhibited in the ring and young-trophozoite stages after mevastatin treatment of parasite cultures. Therefore the isoprenoid pathway may represent a different approach to the development of new anti-malarial drugs.


Subject(s)
Dolichols/metabolism , Erythrocytes/parasitology , Plasmodium falciparum/metabolism , Animals , Dolichols/analogs & derivatives , Glycoproteins/antagonists & inhibitors , Glycoproteins/biosynthesis , Lovastatin/analogs & derivatives , Lovastatin/pharmacology , Plasmodium falciparum/drug effects , Plasmodium falciparum/growth & development
19.
J Biol Chem ; 272(11): 6868-75, 1997 Mar 14.
Article in English | MEDLINE | ID: mdl-9054372

ABSTRACT

Carbohydrate-deficient glycoprotein (CDG) syndrome type I is a congenital disorder that involves the underglycosylation of N-glycosylated glycoproteins (Yamashita, K., Ideo, H., Ohkura, T., Fukushima, K., Yuasa, I., Ohno, K., and Takeshita, K. (1993) J. Biol. Chem. 268, 5783-5789). In an effort to further elucidate the biochemical basis of CDG syndrome type I in our patients, we investigated the defect in the multi-step pathway for biosynthesis of lipid-linked oligosaccharides (LLO) by the metabolic labeling method using [3H]glucosamine, [3H]mannose, and [3H]mevalonate. The LLO levels in synchronized cultures of fibroblasts from these patients were severalfold lower than those in control fibroblasts in the S phase, and the oligosaccharides released from LLO showed the same structural composition, Glc1 approximately 3.Man9.GlcNAc.GlcNAc, in the case of both the patients and controls. The amount of [3H]mannose incorporated into mannose 6-phosphate, mannose 1-phosphate, and GDP-mannose was greater in fibroblasts from these patients than in the control fibroblasts in the G1 period, although the ratios of these acidic mannose derivatives as indicated by the relative levels of radioactivity were the same for the two types of fibroblasts. Furthermore, upon metabolic labeling with [3H]mevalonate, the level of [3H]dehydrodolichol in fibroblasts from these patients increased in the S phase, and the levels of [3H]dolichol and [3H]dolichol-PP oligosaccharides concomitantly decreased, although the chain length distribution of the respective dolichols and dehydrodolichols was the same in the two types of fibroblasts. These results indicate that the conversion of dehydrodolichol to dolichol is partially defective in our patients and that the resulting loss of dolichol leads directly to underglycosylation.


Subject(s)
Congenital Disorders of Glycosylation/metabolism , Dolichols/analogs & derivatives , Oligosaccharides/metabolism , Cells, Cultured , Congenital Disorders of Glycosylation/etiology , Congenital Disorders of Glycosylation/pathology , Dolichols/deficiency , Fibroblasts/metabolism , Humans
20.
J Biol Chem ; 271(16): 9560-6, 1996 Apr 19.
Article in English | MEDLINE | ID: mdl-8621629

ABSTRACT

Two new polyprenyl products in addition to dehydrodolichol and dolichol were detected by two-plate silica gel thin layer chromatography of nonpolar products formed from [1-14C]isopentenyl diphosphate and farnesyl diphosphate in the reaction with a crude 1,000 x g supernatant of yeast homogenates in the presence of NADPH. The new products were indistinguishable from authentic dehydrodolichal and dolichal. Analyses of the time-dependent and pH-dependent formation of the four products including dehydrodolichal and dolichal suggested that the biosynthetic pathway from dehydrodolichol leading to dolichal is different from that to dolichol. In double-labeled experiments with a combination of -l-14C-isopentenyl diphosphate and a [4B-3H]NADPH-generating system, the ratio of 3H- and 14C-derived radioactivities found in dolichal was six times higher than that in dolichol. A small amount of 3H-labeled dehydrodolichol was also detected. Considering the fact that dolichol is synthesized from dehydrodolichol (Sagami, H., Kurisaki, A., and Ogura, K. (1993) J. Biol. Chem. 268, 10109-10113), we propose that dehydrodolichol is a common branch point intermediate in the biosynthetic pathways leading to dolichal and dolichol and that dehydrodolichal is an intermediate in the pathway from dehydrodolichol to dolichal.


Subject(s)
Dolichols/analogs & derivatives , Dolichols/metabolism , Hemiterpenes , Organophosphorus Compounds/metabolism , Saccharomyces cerevisiae/metabolism , Carbon Radioisotopes , Chromatography, Thin Layer , Detergents/pharmacology , Dolichols/isolation & purification , Kinetics , NADP/metabolism , Radioisotope Dilution Technique , Saccharomyces cerevisiae/growth & development , Tritium
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