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1.
J Helminthol ; 98: e47, 2024 Jun 03.
Article in English | MEDLINE | ID: mdl-38828707

ABSTRACT

Relative to the numerous studies focused on mammalian schistosomes, fewer include avian schistosomatids particularly in the southern hemisphere. This is changing and current research emerging from the Neotropics shows a remarkable diversity of endemic taxa. To contribute to this effort, nine ducks (Spatula cyanoptera, S.versicolor, Netta peposaca), 12 swans (Cygnus melancoryphus) and 1,400 Physa spp. snails from Chile and Argentina were collected for adults and larval schistosomatids, respectively. Isolated schistosomatids were preserved for morphological and molecular analyses (28S and COI genes). Four different schistosomatid taxa were retrieved from birds: Trichobilharzia sp. in N. peposaca and S. cyanoptera that formed a clade; S.cyanoptera and S. versicolor hosted Trichobilharzia querquedulae; Cygnus melancoryphus hosted the nasal schistosomatid, Nasusbilharzia melancorhypha; and one visceral, Schistosomatidae gen. sp., which formed a clade with furcocercariae from Argentina and Chile from previous work. Of the physid snails, only one from Argentina had schistosomatid furcocercariae that based on molecular analyses grouped with T. querquedulae. This study represents the first description of adult schistosomatids from Chile as well as the elucidation of the life cycles of N.melancorhypha and T. querquedulae in Chile and Neotropics, respectively. Without well-preserved adults, the putative new genus Schistosomatidae gen. sp. could not be described, but its life cycle involves Chilina spp. and C. melancoryphus. Scanning electron microscopy of T. querquedulae revealed additional, undescribed morphological traits, highlighting its diagnostic importance. Authors stress the need for additional surveys of avian schistosomatids from the Neotropics to better understand their evolutionary history.


Subject(s)
Life Cycle Stages , Phylogeny , Schistosomatidae , Animals , Schistosomatidae/genetics , Schistosomatidae/classification , Schistosomatidae/isolation & purification , Schistosomatidae/growth & development , Schistosomatidae/anatomy & histology , Chile , Argentina , Birds/parasitology , Bird Diseases/parasitology , RNA, Ribosomal, 28S/genetics , Snails/parasitology , South America , Electron Transport Complex IV/genetics
2.
Parasit Vectors ; 17(1): 249, 2024 Jun 06.
Article in English | MEDLINE | ID: mdl-38845044

ABSTRACT

BACKGROUND: Multiple species of the genera Cytauxzoon and Hepatozoon can infect wild felines, but the diversity of these and other apicomplexan parasites in Eurasian lynx is scarcely known. The aim of this study was to detect Cytauxzoon and Hepatozoon species with molecular methods in Eurasian lynxes and their ticks in northwestern China. METHODS: DNA was extracted from the heart, liver, spleen, lung, and kidney samples of three Eurasian lynxes as well as from their five ixodid ticks. These DNA samples were screened with polymerase chain reactions (PCRs) for Cytauxzoon with the partial cytochrome b gene (CytB), cytochrome c oxidase subunit I gene (COI), and small subunit ribosomal RNA gene (18S rRNA), and Hepatozoon with three different fragments of small subunit ribosomal RNA gene (18S rRNA). PCR products were sequenced, aligned, and phylogenetically analyzed. RESULTS: One adult female of Eurasian lynx (#1, adult female) was co-infected with Cytauxzoon manul and Hepatozoon felis genotype I, while an adult male lynx (#2) was infected with C. manul. Interestingly, H. felis genotype I was both detected in a male cub (#3) and two out of five infesting Hyalomma asiaticum ticks. CONCLUSIONS: For the first time, Cytauxzoon manul is reported here from Eurasian lynx. In addition, H. felis has not been known to occur in this host species in China and Central Asia. Thus, the findings of this study extend our knowledge on the geographical distribution and host range of these haemoprotozoan parasites. Moreover, this is also the first evidence of C. manul and H. felis co-infection in Eurasian lynx.


Subject(s)
Lynx , Phylogeny , Piroplasmida , Protozoan Infections, Animal , RNA, Ribosomal, 18S , Animals , Lynx/parasitology , China , Female , Male , Protozoan Infections, Animal/parasitology , Protozoan Infections, Animal/epidemiology , Piroplasmida/genetics , Piroplasmida/isolation & purification , Piroplasmida/classification , RNA, Ribosomal, 18S/genetics , DNA, Protozoan/genetics , Coccidiosis/veterinary , Coccidiosis/parasitology , Coccidiosis/epidemiology , Ixodidae/parasitology , Ixodidae/classification , Ixodidae/genetics , Polymerase Chain Reaction , Electron Transport Complex IV/genetics
3.
J Biosci ; 492024.
Article in English | MEDLINE | ID: mdl-38726822

ABSTRACT

Fish of the genus Hypselobarbus (Bleeker 1860) are widely dispersed in the rivers of the Western Ghats in India and endemic to southern Indian peninsular freshwaters. These are small- to medium-sized fishes of the family Cyprinidae. Although fish with deformed bodies or body parts are rare in natural waters, this article deals with four abnormal specimens of Hypselobarbus curmuca (Hamilton 1807) collected from the rivers Tunga, Bhadra, and Kali during 2022. The abnormalities observed in four different individuals are pughead deformity, pelvic fin deformity, pectoral fin deformity, and enlarged scales. The morphological comparison of normal individuals of Hypselobarbus curmuca (Hamilton 1807) with abnormal specimens revealed variation. Using the MT-COI gene, species identity was confirmed and the mean genetic divergence between the normal and abnormal specimens was estimated to be less than 1%.


Subject(s)
Cyprinidae , Rivers , Animals , India/epidemiology , Cyprinidae/genetics , Phylogeny , Electron Transport Complex IV/genetics , Genetic Variation , Animal Fins/anatomy & histology , Animal Fins/abnormalities , Fish Proteins/genetics
4.
J Parasitol ; 110(3): 186-194, 2024 May 01.
Article in English | MEDLINE | ID: mdl-38700436

ABSTRACT

Leech specimens of the genus Pontobdella (Hirudinida: Piscicolidae) were found off the coast of the state of Oaxaca (Pacific) as well as in Veracruz and Tabasco (Gulf of Mexico), Mexico. Based on the specimens collected in Oaxaca, a redescription of Pontobdella californiana is provided, with emphasis on the differences in the reproductive organs with the original description of the species. In addition, leech cocoons assigned to P. californiana were found attached to items hauled by gillnets and studied using scanning electron microscopy and molecular approaches. Samples of Pontobdella macrothela were found in both Pacific and Atlantic oceans, representing new geographic records. The phylogenetic position of P. californiana is investigated for the first time, and with the addition of Mexican samples of both species, the phylogenetic relationships within Pontobdella are reinvestigated. Parsimony and maximum-likelihood phylogenetic analysis were based on mitochondrial (cytochrome oxidase subunit I [COI] and 12S rRNA) and nuclear (18S rRNA and 28S rRNA) DNA sequences. Based on our results, we confirm the monophyly of Pontobdella and the pantropical distribution of P. macrothela with a new record in the Tropical Eastern Pacific.


Subject(s)
Leeches , Microscopy, Electron, Scanning , Phylogeny , Animals , Leeches/classification , Leeches/genetics , Leeches/anatomy & histology , Mexico , Microscopy, Electron, Scanning/veterinary , Pacific Ocean , Atlantic Ocean , DNA, Ribosomal/chemistry , RNA, Ribosomal, 28S/genetics , Fish Diseases/parasitology , Gulf of Mexico/epidemiology , Electron Transport Complex IV/genetics , Ectoparasitic Infestations/parasitology , Ectoparasitic Infestations/veterinary , RNA, Ribosomal, 18S/genetics , Molecular Sequence Data , Sequence Alignment/veterinary , Likelihood Functions , Fishes/parasitology
5.
Microb Ecol ; 87(1): 64, 2024 May 01.
Article in English | MEDLINE | ID: mdl-38691215

ABSTRACT

Mosquitoes are a complex nuisance around the world and tropical countries bear the brunt of the burden of mosquito-borne diseases. Rwanda has had success in reducing malaria and some arboviral diseases over the last few years, but still faces challenges to elimination. By building our understanding of in situ mosquito communities in Rwanda at a disturbed, human-occupied site and at a natural, preserved site, we can build our understanding of natural mosquito microbiomes toward the goal of implementing novel microbial control methods. Here, we examined the composition of collected mosquitoes and their microbiomes at two diverse sites using Cytochrome c Oxidase I sequencing and 16S V4 high-throughput sequencing. The majority (36 of 40 species) of mosquitoes captured and characterized in this study are the first-known record of their species for Rwanda but have been characterized in other nations in East Africa. We found significant differences among mosquito genera and among species, but not between mosquito sexes or catch method. Bacteria of interest for arbovirus control, Asaia, Serratia, and Wolbachia, were found in abundance at both sites and varied greatly by species.


Subject(s)
Bacteria , Culicidae , Microbiota , Wolbachia , Rwanda , Animals , Culicidae/microbiology , Wolbachia/genetics , Wolbachia/isolation & purification , Wolbachia/classification , Bacteria/classification , Bacteria/genetics , Bacteria/isolation & purification , Mosquito Vectors/microbiology , Female , Male , RNA, Ribosomal, 16S/genetics , Serratia/genetics , Serratia/isolation & purification , Serratia/classification , Electron Transport Complex IV/genetics , High-Throughput Nucleotide Sequencing
6.
Nat Commun ; 15(1): 3731, 2024 May 03.
Article in English | MEDLINE | ID: mdl-38702306

ABSTRACT

Molecular recognition of proteins is key to their biological functions and processes such as protein-protein interactions (PPIs). The large binding interface involved and an often relatively flat binding surface make the development of selective protein-binding materials extremely challenging. A general method is reported in this work to construct protein-binding polymeric nanoparticles from cross-linked surfactant micelles. Preparation involves first dynamic covalent chemistry that encodes signature surface lysines on a protein template. A double molecular imprinting procedure fixes the binding groups on the nanoparticle for these lysine groups, meanwhile creating a binding interface complementary to the protein in size, shape, and distribution of acidic groups on the surface. These water-soluble nanoparticles possess excellent specificities for target proteins and sufficient affinities to inhibit natural PPIs such as those between cytochrome c (Cytc) and cytochrome c oxidase (CcO). With the ability to enter cells through a combination of energy-dependent and -independent pathways, they intervene apoptosis by inhibiting the PPI between Cytc and the apoptotic protease activating factor-1 (APAF1). Generality of the preparation and the excellent molecular recognition of the materials have the potential to make them powerful tools to probe protein functions in vitro and in cellulo.


Subject(s)
Cytochromes c , Electron Transport Complex IV , Nanoparticles , Polymers , Nanoparticles/chemistry , Cytochromes c/metabolism , Cytochromes c/chemistry , Humans , Polymers/chemistry , Polymers/metabolism , Electron Transport Complex IV/metabolism , Electron Transport Complex IV/chemistry , Molecular Imprinting/methods , Protein Binding , Apoptosis , Micelles , HeLa Cells , Animals
7.
Environ Int ; 188: 108780, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38821017

ABSTRACT

Both fine particulate matter (PM2.5) and high-fat diet (HFD) can cause changes in glucose and lipid metabolisms; however, the mechanism of their combined effects on glucose and lipid metabolisms is still unclear. This study aimed to investigate the effects of PM2.5 and HFD co-exposure on glucose and lipid metabolisms and mitochondrial DNA methylation in Wistar rats. PM2.5 and HFD co-treatment led to an increase in fasting blood glucose levels, an alteration in glucose tolerance, and a decrease in high density lipoprotein cholesterol (HDL-C) levels in Wistar rats. In the homeostasis model assessment (HOMA), HOMA-insulin resistance (HOMA-IR) increased and HOMA-insulin sensitivity (HOMA-IS) and HOMA-ß cell function (HOMA-ß) decreased in rats co-exposed to PM2.5 and HFD. Additionally, superoxide dismutase (SOD) and malondialdehyde (MDA) levels were increased, and interleukin-6 (IL-6) and interleukin-10 (IL-10) mRNA expressions were upregulated in the brown adipose tissue following PM2.5 and HFD co-exposure. Bisulfite pyrosequencing was used to detect the methylation levels of mitochondrially-encoded genes (MT-COX1, MT-COX2 and MT-COX3), and MT-COX3 was hypermethylated in the PM2.5 and HFD co-exposure group. Moreover, MT-COX3-Pos.2 mediated 36.41 % (95 % CI: -27.42, -0.75) of the total effect of PM2.5 and HFD exposure on HOMA-ß. Our study suggests that PM2.5 and HFD co-exposure led to changes in glucose and lipid metabolisms in rats, which may be related to oxidative stress and inflammatory responses, followed by mitochondrial stress leading to MT-COX3 hypermethylation. Moreover, MT-COX3-Pos.2 was found for the first time as a mediator in the impact of co-exposure to PM2.5 and HFD on ß-cell function. It could serve as a potential biomarker, offering fresh insights into the prevention and treatment of metabolic diseases.


Subject(s)
Diet, High-Fat , Lipid Metabolism , Particulate Matter , Rats, Wistar , Animals , Particulate Matter/toxicity , Male , Rats , Lipid Metabolism/drug effects , DNA Methylation/drug effects , Insulin Resistance , Glucose/metabolism , Electron Transport Complex IV/metabolism , Oxidative Stress/drug effects , Air Pollutants/toxicity , Blood Glucose
8.
Parasit Vectors ; 17(1): 216, 2024 May 11.
Article in English | MEDLINE | ID: mdl-38734639

ABSTRACT

BACKGROUND: Mosquitoes pose a risk to human health worldwide, and correct species identification and detection of cryptic species are the most important keys for surveillance and control of mosquito vectors. In addition to traditional identification based on morphology, DNA barcoding has recently been widely used as a complementary tool for reliable identification of mosquito species. The main objective of this study was to create a reference DNA barcode library for the Croatian mosquito fauna, which should contribute to more accurate and faster identification of species, including cryptic species, and recognition of relevant vector species. METHODS: Sampling was carried out in three biogeographical regions of Croatia over six years (2017-2022). The mosquitoes were morphologically identified; molecular identification was based on the standard barcoding region of the mitochondrial COI gene and the nuclear ITS2 region, the latter to identify species within the Anopheles maculipennis complex. The BIN-RESL algorithm assigned the COI sequences to the corresponding BINs (Barcode Index Number clusters) in BOLD, i.e. to putative MOTUs (Molecular Operational Taxonomic Units). The bPTP and ASAP species delimitation methods were applied to the genus datasets in order to verify/confirm the assignment of specimens to specific MOTUs. RESULTS: A total of 405 mosquito specimens belonging to six genera and 30 morphospecies were collected and processed. Species delimitation methods assigned the samples to 31 (BIN-RESL), 30 (bPTP) and 28 (ASAP) MOTUs, with most delimited MOTUs matching the morphological identification. Some species of the genera Culex, Aedes and Anopheles were assigned to the same MOTUs, especially species that are difficult to distinguish morphologically and/or represent species complexes. In total, COI barcode sequences for 34 mosquito species and ITS2 sequences for three species of the genus Anopheles were added to the mosquito sequence database for Croatia, including one individual from the Intrudens Group, which represents a new record for the Croatian mosquito fauna. CONCLUSION: We present the results of the first comprehensive study combining morphological and molecular identification of most mosquito species present in Croatia, including several invasive and vector species. With the exception of some closely related species, this study confirmed that DNA barcoding based on COI provides a reliable basis for the identification of mosquito species in Croatia.


Subject(s)
Culicidae , DNA Barcoding, Taxonomic , Electron Transport Complex IV , Mosquito Vectors , Animals , Croatia , Mosquito Vectors/genetics , Mosquito Vectors/classification , Mosquito Vectors/anatomy & histology , Culicidae/classification , Culicidae/genetics , Electron Transport Complex IV/genetics , Anopheles/genetics , Anopheles/classification , Phylogeny , Gene Library
9.
Parasit Vectors ; 17(1): 229, 2024 May 16.
Article in English | MEDLINE | ID: mdl-38755689

ABSTRACT

BACKGROUND: This study examined population genetics of Aedes aegypti in El Salvador and Honduras, two adjacent countries in Central America. Aedes aegypti is associated with yellow fever, dengue, chikungunya, and Zika. Each year, thousands of cases of dengue are typically reported in El Salvador and Honduras. METHODS: In El Salvador, collections were obtained from five Departments. In Honduras, samples were obtained from six municipalities in four Departments. Mitochondrial DNA cytochrome oxidase I (COI) was sequenced, and consensus sequences were combined with available sequences from El Salvador to determine haplotype number, haplotype diversity, nucleotide diversity, and Tajima's D. A haplotype network was produced to examine the relationship between genotypes. RESULTS: In El Salvador, there were 17 haplotypes, while in Honduras there were 4 haplotypes. In both El Salvador and Honduras, Haplotype 1 is most abundant and widespread. In El Salvador, haplotype H2 was also widespread in 10 of 11 sampled municipalities, but it was not present in Honduras. The capital of El Salvador (San Salvador) and the eastern region of ES had the highest haplotype diversity of regions sampled. CONCLUSIONS: Haplotype 1 and H2 each belong to different phylogenetic lineages of Ae. aegypti. The most geographically widespread haplotype (H1) may have been present the longest and could be a remnant from previous eradication programs. These data may contribute to future control programs for Ae. aegypti in the two countries.


Subject(s)
Aedes , Genetic Variation , Haplotypes , Mosquito Vectors , Animals , Honduras , Aedes/genetics , Aedes/classification , El Salvador , Mosquito Vectors/genetics , Mosquito Vectors/classification , Mosquito Control , Electron Transport Complex IV/genetics , Phylogeny , DNA, Mitochondrial/genetics , Genotype
10.
Vet Parasitol Reg Stud Reports ; 51: 101030, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38772646

ABSTRACT

Spirometra mansoni is a diphyllobothroid cestode and one of the causing agents of sparganosis, a zoonotic foodborne and waterborne infection in humans. This parasite has an indirect life cycle with domestic and wild canids or felids as definitive hosts. The last report of S. mansoni in Costa Rica was done in 2004 by morphological assessment of worms, whereas molecular evidence of this species was obtained recently in the Americas. Herein, we present seven cases of spirometrosis in four dogs, three cats and a coyote from different regions of Costa Rica occurring in a time span of a year. Dog cases presented vomiting, hyporexia, lethargy and diarrhea, whereas cats were mostly asymptomatic. Moreover, the coyote was found with Spirometra sp. proglottids incidentally. Cytochrome oxidase subunit 1 (cox1) sequences of eggs or proglottids derived from all cases were analyzed with a Bayesian Inference phylogenetic tree and a haplotype network. These analyses showed the clustering of S. mansoni from Costa Rica with other sequences derived from Asia and America. Moreover, cox1 sequences clustered in two separate haplotypes, suggesting the high genetic diversity of the species. The present cases represent the first molecular evidence of the parasite in Central America; thus, extending its known range in the American continent.


Subject(s)
Animals, Wild , Cat Diseases , Dog Diseases , Phylogeny , Spirometra , Animals , Cats/parasitology , Dogs , Female , Male , Animals, Wild/parasitology , Cat Diseases/parasitology , Cat Diseases/epidemiology , Cestode Infections/veterinary , Cestode Infections/parasitology , Cestode Infections/epidemiology , Costa Rica/epidemiology , Coyotes/parasitology , Dog Diseases/parasitology , Dog Diseases/epidemiology , Electron Transport Complex IV/analysis , Electron Transport Complex IV/genetics , Spirometra/genetics , Spirometra/isolation & purification
11.
Invertebr Syst ; 382024 Feb.
Article in English | MEDLINE | ID: mdl-38744495

ABSTRACT

Ninetinae is a group of small to tiny short-legged spiders largely restricted to arid habitats. Among daddy-long-legs spiders (Pholcidae) this is by far the least diverse subfamily but this may partly be a result of inadequate collecting, poor representation in collections or scientific neglect. We build on a large recent collection of the ninetine genus Papiamenta Huber, 2000 from the Leeward Antilles and use cytochrome oxidase 1 (COI ) sequences, extensive scanning electron microscopy data, transmission electron microscopy data and karyotyping to analyse this geographically isolated and poorly known island genus. COI sequences support the split between the two morphologically distinct species on Curaçao but genetic distances between these are surprisingly low (7.4-9.8%; mean 8.6%). The type species P. levii (Gertsch, 1982) may include more than one species but COI and morphology suggest conflicting clade limits. A third species, P. bonay Huber sp. nov. is newly described from Bonaire. Our data on sperm ultrastructure and karyology are puzzling as these suggest different phylogenetic affinities of Papiamenta to other genera. Males transfer sperm as individual sperm (cleistosperm), agreeing with the putative closest relatives as suggested by molecular data, the North American genera Pholcophora and Tolteca . The sex chromosome system (X 1 X 2 X 3 Y ) of P. levii , however, is as in the South American Ninetinae genera Gertschiola and Nerudia but different from the putative closest relatives. ZooBank: urn:lsid:zoobank.org:pub:7A6A2E84-3A61-4637-AF6F-0E31A9FA79A8.


Subject(s)
Phylogeny , Spiders , Animals , Spiders/genetics , Spiders/classification , Male , Electron Transport Complex IV/genetics , Species Specificity , Female , Microscopy, Electron, Scanning , Microscopy, Electron, Transmission
12.
Invertebr Syst ; 382024 Feb.
Article in English | MEDLINE | ID: mdl-38744496

ABSTRACT

A fine-scale phylogenetic and phylogeographic analysis of Peripatopsis lawrencei s.l. was conducted with both mitochondrial and nuclear DNA sequence data, using both external morphology and scanning electron microscopy of taxonomically important characters. A total of 119 sequences were used for the mitochondrial cytochrome c oxidase subunit I (COI ) whereas a single representative specimen from each locality was sequenced for the nuclear 18S rRNA locus. Phylogenetic analyses were conducted on the total COI data set and the combined COI + 18S rRNA data set using a Bayesian analysis and maximum likelihood analyses. For the combined DNA sequence data set, a divergence time estimation was further undertaken in BEAST and specimens placed in a phylogenetic framework including all the described Peripatopsis species from South Africa. In addition, a phylogeographic study was conducted exclusively on P. lawrencei s.s. (clade A) using an analysis of molecular variance and haplotype network. Phylogenetic results indicated that, at the Oubos sample locality, two highly distinct genetic lineages were present (clades A and B), whereas a divergence time estimation suggests a Miocene cladogenesis of the novel Oubos lineage. Marked phylogeographic structure was observed for P. lawrencei s.s. (restricted to clade A) across the distribution range with limited maternal dispersal. Morphologically, the two sympatric lineages at Oubos A and B differed in leg pair number, ventral colour and dorsal scale rank counts, as evident from scanning electron microscopy. Our results support the recognition of a distinct species that occurs in sympatry with P. lawrencei s.s. The new species, P. aereus sp. nov. (clade B) is described and the implication for fine-scale taxonomic studies on saproxylic taxa is discussed. ZooBank: urn:lsid:zoobank.org:pub:AB6E0BDA-7B5F-4FD3-A863-BA7C814E278C.


Subject(s)
Biodiversity , Invertebrates , Phylogeny , Animals , Electron Transport Complex IV/genetics , Phylogeography , RNA, Ribosomal, 18S/genetics , South Africa , Invertebrates/genetics
13.
Invertebr Syst ; 382024 Mar.
Article in English | MEDLINE | ID: mdl-38744499

ABSTRACT

Mastigusa is a genus of small palearctic spiders that has recently been moved to the family Cybaeidae after the first inclusion of the genus in a phylogenetic matrix. Three species are currently recognised: M. arietina , M. lucifuga and M. macrophthalma . The status and delimitation, though, has always been problematic due to inconsistency in the characters used to discriminate between these, leading to great confusion in identity and distribution. We present a detailed morphological redescription of the genus and a taxonomic revision of the included species by the combined use of morphological data and molecular species-delimitation techniques based on the mitochondrial COI gene. The status of the three currently described species has been reevaluated and Mastigusa diversa was revalidated based on material from the Iberian Peninsula, North Africa and the United Kingdom. The distribution of Mastigusa species is updated based on novel taxonomic considerations, and comments on the natural history and ecological differences observed in the species are provided. ZooBank: urn:lsid:zoobank.org:pub:AAD3FAED-440F-4295-B458-455B1D913F81.


Subject(s)
Phylogeny , Spiders , Animals , Female , Male , Electron Transport Complex IV/genetics , Genitalia/anatomy & histology , Spiders/classification , Spiders/anatomy & histology , Spiders/genetics
14.
PLoS One ; 19(5): e0298412, 2024.
Article in English | MEDLINE | ID: mdl-38781219

ABSTRACT

The equine South African pointy vector mosquito, Aedes caballus, poses a significant threat to human health due to its capacity for transmitting arboviruses. Despite favorable climate for its existence in southeast Iran, previous records of this species in the area have indicated very low abundance. This comprehensive field and laboratory study aimed to assess its current adult population status in this region, utilizing a combination of ecological, morphological and molecular techniques. Four distinct types of traps were strategically placed in three fixed and two variable mosquito sampling sites in the southern strip of Sistan and Baluchistan Province. Subsequently, DNA was extracted from trapped mosquitoes and subjected to PCR amplification using the molecular markers COI, ITS2, and ANT. In total, 1734 adult Ae. caballus specimens were collected from rural areas, with the majority being captured by CO2-baited bednet traps. A notable increase in the abundance of this species was observed following rainfall in February. The genetic analysis revealed multiple haplotypes based on COI and ITS2 sequences, with COI gene divergence at 0.89%, and ITS2 sequence divergence at 1.6%. This suggests that previous challenges in morphological identification may have led to misidentifications, with many adults previously classified as Ae. vexans potentially being Ae. caballus. The findings of this study hold significant implications for public health authorities, providing valuable insights for integrated and targeted vector control and disease management efforts.


Subject(s)
Aedes , Mosquito Vectors , Animals , Iran , Mosquito Vectors/genetics , Mosquito Vectors/anatomy & histology , Aedes/genetics , Aedes/classification , Aedes/anatomy & histology , Horses/genetics , Phylogeny , Haplotypes , Female , Electron Transport Complex IV/genetics
15.
Database (Oxford) ; 20242024 May 27.
Article in English | MEDLINE | ID: mdl-38803273

ABSTRACT

Fish, being a crucial component of aquatic ecosystems, holds significant importance from both economic and ecological perspectives. However, the identification of fish at the species level remains challenging, and there is a lack of a taxonomically complete and comprehensive reference sequence database for fish. Therefore, we developed CoSFISH, an online fish database. Currently, the database contains 21 535 cytochrome oxidase I sequences and 1074 18S rRNA sequences of 21 589 species, belonging to 8 classes and 90 orders. We additionally incorporate online analysis tools to aid users in comparing, aligning and analyzing sequences, as well as designing primers. Users can upload their own data for analysis, in addition to using the data stored in the database directly. CoSFISH offers an extensive fish database and incorporates online analysis tools, making it a valuable resource for the study of fish diversity, phylogenetics and biological evolution. Database URL:  http://210.22.121.250:8888/CoSFISH/home/indexPage.


Subject(s)
DNA Barcoding, Taxonomic , Electron Transport Complex IV , Fishes , RNA, Ribosomal, 18S , Animals , Fishes/genetics , Fishes/classification , RNA, Ribosomal, 18S/genetics , Electron Transport Complex IV/genetics , DNA Barcoding, Taxonomic/methods , Databases, Genetic , Phylogeny , Databases, Nucleic Acid
16.
Sci Rep ; 14(1): 12366, 2024 05 29.
Article in English | MEDLINE | ID: mdl-38811606

ABSTRACT

The loss of biodiversity in marine populations is one of the consequences of the increased events of extreme environmental conditions in the oceans, which can condition the persistence of populations to future scenarios of climate change. Therefore, it is extremely necessary to explore and monitor the genetic diversity of natural populations. In the Southeast Pacific Ocean (SEPO), specifically on the coast of Chile, the presence of the copepod Acartia tonsa has been indicated solely using morphological evidence, due to the absence of genetic information. In the present work, the genetic diversity, population structure and phylogenetic position within the genus Acartia, of populations identified morphologically as A. tonsa, was evaluated by amplification of the mitochondrial cytochrome c oxidase subunit I and nuclear marker 18 s. Our results showed that the populations identified as A. tonsa correspond to a new monophyletic group endemic to SEPO (GMYC = 1.00; PTP = 0.95). The populations showed moderate to high genetic diversity with an incipient structuring between populations and biogeographic zones. Our results suggest that despite the homogenizing effect of the Humboldt Current, isolation by distance and contrasting environmental conditions at different geographic scales have an important influence on the genetic diversity of zooplankton in the SEPO region.


Subject(s)
Copepoda , Genetic Variation , Phylogeny , Animals , Copepoda/genetics , Copepoda/classification , Pacific Ocean , Electron Transport Complex IV/genetics , Chile , Biodiversity , Zooplankton/genetics , Zooplankton/classification
17.
Genes (Basel) ; 15(5)2024 May 19.
Article in English | MEDLINE | ID: mdl-38790273

ABSTRACT

Crassostrea ariakensis (Fujita, 1913) is one of the most important economic and ecological oysters that is naturally distributed along the coast of Asia, separated by the Yangtze River estuary. They are usually compared as different populations, while there is no consensus on whether C. ariakensis in northern and southern areas should be considered as two species or subspecies. Here, we analyzed morphological characteristics, COI, 16s rRNA, mitogenome sequences, and species delimitation analysis (ASAP and PTP) to resolve the intraspecific taxonomic status of the C. ariakensis. Phylogenetic and ASAP analysis highlight that C. ariakensis was divided into N-type and S-type. PTP was unable to differentiate between the two types of C. ariakensis. The divergence time of N-type and S-type C. ariakinsis is estimated to be 1.6 Mya, using the relaxed uncorrelated lognormal clock method. Additionally, significant morphological differences exist between the two groups in terms of the adductor muscle scar color. Despite these differences, the COI (0.6%) and 16S rRNA (0.6%) genetic distance differences between N-type and S-type C. ariakensis has not yet reached the interspecific level. These results suggest that N-type and S-type C. ariakensis should be treated as different subspecies and renamed as C. ariakensis ariakensis subsp. nov and C. ariakensis meridioyangtzensis subsp. nov.


Subject(s)
Crassostrea , Phylogeny , RNA, Ribosomal, 16S , Animals , Crassostrea/genetics , Crassostrea/classification , RNA, Ribosomal, 16S/genetics , Asia , Genome, Mitochondrial , Electron Transport Complex IV/genetics
18.
Sci Rep ; 14(1): 10930, 2024 05 13.
Article in English | MEDLINE | ID: mdl-38740928

ABSTRACT

The Scutellaris Group of Aedes comprises 47 mosquito species, including Aedes albopictus. While Ae. albopictus is widely distributed, the other species are mostly found in the Asia-Pacific region. Evolutionary history researches of Aedes species within the Scutellaris Group have mainly focused on Ae. albopictus, a species that raises significant public health concerns, neglecting the other species. In this study, we aimed to assess genetic diversity and estimate speciation times of several species within the Scutellaris Group. Mosquitoes were therefore collected from various Asia-Pacific countries. Their mitochondrial cytochrome c oxidase subunit 1 (cox1) and subunit 3 (cox3) sequences were analyzed alongside those of other Scutellaris Group species available in the GenBank database. To estimate the divergence time, we analyzed 1849 cox1 gene sequences from 21 species, using three species (Aedes aegypti, Aedes notoscriptus and Aedes vigilax) as outgroups. We found that most of the speciation dates occurred during the Paleogene and the Neogene periods. A separation between the Scutellaris Subgroup and the Albopictus Subgroup occurred approximately 64-61 million years ago (MYA). We also identified a split between species found in Asia/Micronesia and those collected in Melanesia/Polynesia approximately 36-35 MYA. Our findings suggest that the speciation of Aedes species within the Scutellaris Group may be driven by diversity in mammalian hosts, climate and environmental changes, and geological dynamics rather than human migration.


Subject(s)
Aedes , Electron Transport Complex IV , Genetic Speciation , Mitochondria , Phylogeny , Animals , Aedes/genetics , Aedes/classification , Electron Transport Complex IV/genetics , Mitochondria/genetics , Genetic Variation , DNA, Mitochondrial/genetics , Evolution, Molecular , Asia
19.
Sci Rep ; 14(1): 10242, 2024 05 03.
Article in English | MEDLINE | ID: mdl-38702415

ABSTRACT

Cerebral infra-slow oscillation (ISO) is a source of vasomotion in endogenic (E; 0.005-0.02 Hz), neurogenic (N; 0.02-0.04 Hz), and myogenic (M; 0.04-0.2 Hz) frequency bands. In this study, we quantified changes in prefrontal concentrations of oxygenated hemoglobin (Δ[HbO]) and redox-state cytochrome c oxidase (Δ[CCO]) as hemodynamic and metabolic activity metrics, and electroencephalogram (EEG) powers as electrophysiological activity, using concurrent measurements of 2-channel broadband near-infrared spectroscopy and EEG on the forehead of 22 healthy participants at rest. After preprocessing, the multi-modality signals were analyzed using generalized partial directed coherence to construct unilateral neurophysiological networks among the three neurophysiological metrics (with simplified symbols of HbO, CCO, and EEG) in each E/N/M frequency band. The links in these networks represent neurovascular, neurometabolic, and metabolicvascular coupling (NVC, NMC, and MVC). The results illustrate that the demand for oxygen by neuronal activity and metabolism (EEG and CCO) drives the hemodynamic supply (HbO) in all E/N/M bands in the resting prefrontal cortex. Furthermore, to investigate the effect of transcranial photobiomodulation (tPBM), we performed a sham-controlled study by delivering an 800-nm laser beam to the left and right prefrontal cortex of the same participants. After performing the same data processing and statistical analysis, we obtained novel and important findings: tPBM delivered on either side of the prefrontal cortex triggered the alteration or reversal of directed network couplings among the three neurophysiological entities (i.e., HbO, CCO, and EEG frequency-specific powers) in the physiological network in the E and N bands, demonstrating that during the post-tPBM period, both metabolism and hemodynamic supply drive electrophysiological activity in directed network coupling of the prefrontal cortex (PFC). Overall, this study revealed that tPBM facilitates significant modulation of the directionality of neurophysiological networks in electrophysiological, metabolic, and hemodynamic activities.


Subject(s)
Electroencephalography , Prefrontal Cortex , Spectroscopy, Near-Infrared , Humans , Prefrontal Cortex/physiology , Prefrontal Cortex/metabolism , Male , Adult , Female , Spectroscopy, Near-Infrared/methods , Low-Level Light Therapy/methods , Young Adult , Rest/physiology , Oxyhemoglobins/metabolism , Electron Transport Complex IV/metabolism , Hemodynamics/physiology , Nerve Net/physiology , Nerve Net/metabolism
20.
Anat Histol Embryol ; 53(3): e13054, 2024 May.
Article in English | MEDLINE | ID: mdl-38735037

ABSTRACT

Identifying and analysing distinct blood cells is crucial for the diagnosis and treatment of diseases in the field of biomedicine. The present study was undertaken to study the cytomorphological and cytochemical characteristics of the blood cells of Zoar, a non-descript indigenous breed of chicken extensively reared under backyard poultry farming in Mizoram, India. For this study, 2 mL of blood samples were aseptically collected from the wings veins of 12 chickens and were processed for light microscopic study under standard protocols. The matured erythrocytes were elliptical, while the immature erythrocytes appeared oval. The heterophils were positive for SBB (SBB), Periodic Acid Schiff (PAS), acid phosphatase, alkaline phosphatase and Arylsulphatase while the eosinophils were positive for SBB, PAS, alkaline phosphatase, cytochrome oxidase and peroxidase. The basophils of were positive for toluidine blue while the thrombocytes were positive for PAS. These cytochemical and cytoenzymatic staining properties plays a very important role in diagnosis, differentiation, and classification of leukaemias.


Subject(s)
Chickens , Eosinophils , Erythrocytes , Animals , Chickens/anatomy & histology , India , Erythrocytes/cytology , Eosinophils/cytology , Blood Cells/cytology , Blood Platelets/cytology , Alkaline Phosphatase/blood , Basophils/cytology , Acid Phosphatase/blood , Electron Transport Complex IV/analysis
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